Citrus Sinensis ID: 018565
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LEL5 | 350 | 3'-hydroxy-N-methyl-(S)-c | N/A | no | 0.937 | 0.948 | 0.399 | 3e-73 | |
| Q9LEL6 | 347 | (RS)-norcoclaurine 6-O-me | N/A | no | 0.963 | 0.982 | 0.393 | 1e-72 | |
| B0EXJ8 | 355 | Tabersonine 16-O-methyltr | N/A | no | 0.949 | 0.946 | 0.383 | 5e-64 | |
| Q6VMW0 | 366 | 8-hydroxyquercetin 8-O-me | N/A | no | 0.966 | 0.934 | 0.387 | 2e-63 | |
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.949 | 0.941 | 0.353 | 2e-61 | |
| Q8GSN1 | 348 | Myricetin O-methyltransfe | N/A | no | 0.957 | 0.974 | 0.345 | 4e-60 | |
| Q93WU3 | 356 | Chavicol O-methyltransfer | N/A | no | 0.946 | 0.941 | 0.345 | 4e-58 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.926 | 0.911 | 0.388 | 5e-58 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.937 | 0.943 | 0.346 | 4e-56 | |
| Q93WU2 | 357 | Eugenol O-methyltransfera | N/A | no | 0.991 | 0.983 | 0.333 | 1e-55 |
| >sp|Q9LEL5|4OMT_COPJA 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1 | Back alignment and function desciption |
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Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 212/343 (61%), Gaps = 11/343 (3%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQR 71
A+ +WK ++GF + V++CAVELGI + ++ P+ L +LAS L CD L R
Sbjct: 14 AQAHVWKIIYGFADSLVLRCAVELGIVDIIDNNNQPMALADLASKLPVSDVNCDN--LYR 71
Query: 72 IMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLG 131
I+R+L+ ++ + + G + P++ L R+ + +M IL + + PWHS+
Sbjct: 72 ILRYLVKMEILRVEKSDDGQKKYALEPIATLLSRNAKRSMVPMILGMTQKDFMTPWHSMK 131
Query: 132 TRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIE 191
+ NGT AF+KA G +W Y S+L N+ MA +TRL ++I G ++F GI+
Sbjct: 132 DGLSDNGT-AFEKAMGMTIWEYLEGHPDQSQLFNEGMAGETRLLTSSLISGSRDMFQGID 190
Query: 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAA 251
+LVD+GG +GTT++ ++ AFP I+ FDLPHV+ + +E +GGDMF VP A A
Sbjct: 191 SLVDVGGGNGTTVKAISDAFPHIKCTLFDLPHVIANSYDLPNIERIGGDMFKSVPSAQAI 250
Query: 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM 311
I+K +LHDW D++ IKILK C+ A+ KD GKVIIV+ ++E+ D++ S RL+LD+ M
Sbjct: 251 ILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEES--DHELSSTRLILDIDM 308
Query: 312 MAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+ +T GKER+ + W+ +++ AGFS I I A+QS+IE FP
Sbjct: 309 LVNTG-GKERTKEVWEKIVKSAGFSGCKIRHIAAIQSVIEVFP 350
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Catalyzes the transfer of the methyl group to the 4'-hydroxyl group of 3'-hydroxy-N-methylcoclaurine to form reticuline. Coptis japonica (taxid: 3442) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 6 |
| >sp|Q9LEL6|6OMT_COPJA (RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1 | Back alignment and function description |
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Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 214/348 (61%), Gaps = 7/348 (2%)
Query: 10 MKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDP--- 66
+KK+ ++ ++W +++GF V+KCAV+L +A + G+ +TL+EL+S L P
Sbjct: 3 VKKDNLSSQAKLWNFIYGFAESLVLKCAVQLDLANIIHNSGTSMTLSELSSRLPSQPVNE 62
Query: 67 SLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAP 126
L R+MR+L+H+K F + + G + + P ++ L++ + M IL + +AP
Sbjct: 63 DALYRVMRYLVHMKLFTKA-SIDGELRYGLAPPAKYLVKGWDKCMVGSILAITDKDFMAP 121
Query: 127 WHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEV 186
WH L + +AF+KA G ++W Y A ++L N+AMA D+RL M A+++ C +
Sbjct: 122 WHYLKDGLSGESGTAFEKALGTNIWGYMAEHPEKNQLFNEAMANDSRLIMSALVKECGNI 181
Query: 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVP 246
F+GI TLVD+GG GT +R + AFP I+ +DLPHV+ + V V GDMF +P
Sbjct: 182 FNGITTLVDVGGGTGTAVRNIANAFPHIKCTVYDLPHVIADSPGYSEVHCVAGDMFKFIP 241
Query: 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLM 306
+ADA ++K +LHDW D ECI+ILK CKEA+ GKVIIV+ ++ ++ + +RL
Sbjct: 242 KADAIMMKCILHDWDDKECIEILKRCKEAVPVKGGKVIIVDIVLNVQS--EHPYTKMRLT 299
Query: 307 LDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
LD+ MM +T GKER+ +EW ++ AG+ + IT I AVQS+IEA+P
Sbjct: 300 LDLDMMLNTG-GKERTEEEWKKLIHDAGYKGHKITQITAVQSVIEAYP 346
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Catalyzes the transfer of the S-methyl group of S-adenosyl-L-methionine (AdoMet) to the 6-hydroxyl group of norcoclaurine to form coclaurine. Coptis japonica (taxid: 3442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 8 |
| >sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1 | Back alignment and function description |
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Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 202/347 (58%), Gaps = 11/347 (3%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL--KCDPS---LLQR 71
A+ +IW F A +KCAV+LGI + ++ G PITL+EL +AL PS + R
Sbjct: 11 AQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHPSKAPFIYR 70
Query: 72 IMRFLIHLKFFKEVPT-SQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSL 130
+MR L F E + + TP SR L++ N+ +L + PV L W SL
Sbjct: 71 LMRVLAKNGFCSEEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQLKAWESL 130
Query: 131 G--TRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFD 188
+ + ++AF+ AHGK+ W Y++ H++ N+AMA D++L + +I +F+
Sbjct: 131 SDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLIGEYKFLFE 190
Query: 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEA 248
G+ +LVDIGG GT + + K FP+++ FDLPHVV E VE V GDMF+ +P A
Sbjct: 191 GLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAGDMFEKIPSA 250
Query: 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD 308
+A +KW+LHDW D++C+KILK+CK+AI GKVII++ ++ D D+ K+ + +D
Sbjct: 251 NAIFLKWILHDWNDEDCVKILKSCKKAIPAKGGKVIIIDMVMYSDKKDDHLVKT-QTSMD 309
Query: 309 MVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI-TSIHAVQSLIEAFP 354
M M+ + KER KEW ++ ++AGFS Y I + +SLIE +P
Sbjct: 310 MAMLVNF-AAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
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16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1 | Back alignment and function description |
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Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/359 (38%), Positives = 203/359 (56%), Gaps = 17/359 (4%)
Query: 11 KKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL---KCDPS 67
K+E +A+ +W +++ + N +KCA++LGI +A+ + G+PITL++LA AL K
Sbjct: 10 KQELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSH 69
Query: 68 LLQRIMRFLIHLKFF---------KEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLE 118
L R+MR L+H FF + + A+ TP SR L+R ++A F L
Sbjct: 70 GLFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAM 129
Query: 119 SSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRA 178
S PV WH L + +AFD +G YA AD + L N+AMACD
Sbjct: 130 SDPVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSI 189
Query: 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVG 238
+ C E+FDG+E++VD+GG G T + + AFP + DLP+VV + + V
Sbjct: 190 LTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSFVS 249
Query: 239 GDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKG---KVIIVEAIIEEDDG 295
GDMFD +P ADA +K++LHDW D+EC+KILK CKEAI++ K+I+VE I+ ED+
Sbjct: 250 GDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVE-IVMEDEK 308
Query: 296 VDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
++ +L DM M+A GKERS KEW + AGF+ Y IT + ++S+IE FP
Sbjct: 309 ETHEATETKLFFDMQMLAIIT-GKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
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8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether. Mentha piperita (taxid: 34256) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function description |
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Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/345 (35%), Positives = 184/345 (53%), Gaps = 9/345 (2%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQ---RIM 73
A+ +W ++F F +KCA++LGI + + G P+TL EL + L P Q R+M
Sbjct: 15 AQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPVHPKRSQCVYRLM 74
Query: 74 RFLIHLKFFKEVPTSQGSM--AFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLG 131
R L+H F QG + T SR L+ ++ +L P++ PWH L
Sbjct: 75 RILVHSGFLAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRPLVLAMLDPILTKPWHYLS 134
Query: 132 TRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIE 191
+ + F A+ + W YA + + N+AMA D RL +++ VF G+
Sbjct: 135 AWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLKEGQGVFAGLN 194
Query: 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAA 251
+LVD+GG G + + AFP + DL HVV + + + GDMF+ +P ADA
Sbjct: 195 SLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNLNYFAGDMFEAIPPADAI 254
Query: 252 IIKWVLHDWGDDECIKILKNCKEAIT--KDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM 309
++KW+LHDW ++EC+KILK C+EAI ++ GKVII++ I+ ++ G D K +L DM
Sbjct: 255 LLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQG-DYKSTETQLFFDM 313
Query: 310 VMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
MM G+ER EW+ + AGFS Y IT I ++SLIE +P
Sbjct: 314 TMMIFA-PGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 0 |
| >sp|Q8GSN1|MOMT_CATRO Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1 | Back alignment and function description |
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Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 207/353 (58%), Gaps = 14/353 (3%)
Query: 9 MMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS- 67
+ E +A+ + VF FT+M+ +KCAV+LGI +A+ G P+ L++L ++L +PS
Sbjct: 3 LQSSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSK 62
Query: 68 --LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLA 125
+ R+MR L+ +F E + + TP +R L+++ N + +L + L
Sbjct: 63 APYIYRLMRILVAAGYFSE----EEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELK 118
Query: 126 PWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPE 185
W+++ +AF+ AHGK+ W + A D + K + MA D+ L + +I
Sbjct: 119 AWNAMSEWFQNEDLTAFETAHGKNFWDFGAEDK-YGKNFDGVMAADSILVSKMLIPEFNY 177
Query: 186 VFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGV 245
+F+G+++LVD+GG GT + + K+FP ++ FDLPHVV E +E VGGDMF+ +
Sbjct: 178 LFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDMFEKI 237
Query: 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDK--GKVIIVEAIIEEDDGVDNKFKSV 303
P A+A ++KW+LHDW D+EC+K+LK C++AI + + GKVI++E ++ + +N+ ++V
Sbjct: 238 PSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENE-EAV 296
Query: 304 RLML--DMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+ + D+ MM KER+ +EW + R+AGFS Y I + +S IE +P
Sbjct: 297 KAQISSDIDMMVFFT-AKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
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Methylates myricetin and dihydromyricetin at 2 sites. Inactive towards 16-hydroxytabersonine, the phenylpropanoids 5-hydroxyferulate, caffeate and their CoA-esters, flavones and flavonones possessing 2 or 3 B-ring hydroxyl groups. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 9 |
| >sp|Q93WU3|CVMT1_OCIBA Chavicol O-methyltransferase OS=Ocimum basilicum GN=CVOMT1 PE=1 SV=1 | Back alignment and function description |
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Score = 225 bits (574), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 196/342 (57%), Gaps = 7/342 (2%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCD---PSLLQRIM 73
A+ +W +++ F N +KCA++LGI + + + P+TL++L A+ + QR+M
Sbjct: 18 AQAHVWNHMYAFANSMSLKCAIQLGIPDILHKHDHPMTLSQLLKAIPINKEKSQSFQRLM 77
Query: 74 RFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTR 133
R L++ FF E ++ + + TP SR L++ +A + + P PWH +
Sbjct: 78 RALVNSNFFIEENSNNQEVCYWLTPASRLLLKGAPLTVAPLVQVVLDPTFTNPWHYMSEW 137
Query: 134 VL-ANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIET 192
N + F+ A+G W A + + ++AM+CD+RL + + V DGI T
Sbjct: 138 FKHENHATQFEAANGCTFWEKLANKPSMGRFFDEAMSCDSRLVAHVLTKDYKHVIDGIRT 197
Query: 193 LVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAI 252
LVD+GG +GT + + +A P ++ DLPHVV E + ++GGDMF +P ADA +
Sbjct: 198 LVDVGGGNGTMAKAIVEAVPTMKCTVLDLPHVVAGLESTDKLSYIGGDMFQSIPSADAIL 257
Query: 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM 312
+K+++HDW D+E +KILK CK+A+ GKVII++ ++ + VD + +L DM MM
Sbjct: 258 LKFIIHDWDDEEGLKILKRCKDAVGIG-GKVIIIDVVVGVNHDVDEVLED-QLHFDMAMM 315
Query: 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
++ N KER++ EW+ ++ AGF+ Y +T V+SLIEA+P
Sbjct: 316 SYFN-AKERTMNEWEKLISAAGFTSYKLTPAFGVRSLIEAYP 356
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Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of chavicol to methylchavicol. Can also convert eugenol to methyleugenol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 201/355 (56%), Gaps = 27/355 (7%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS---LLQRIM 73
A++ ++K+V+ F + +K A+ELGIA+A+ G P+TL EL+S+LK PS +L R +
Sbjct: 16 AQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLPELSSSLKLHPSKVNILYRFL 75
Query: 74 RFLIHLKFFKE--VPTSQGS--MAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPW-- 127
R L H FF + V +++G A+ TP S+ L+ +++ + P L W
Sbjct: 76 RLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGALHPSSLDMWGV 135
Query: 128 -----HSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEG 182
H + L F+ A G++ W + D+ + DAMA D+RL AI E
Sbjct: 136 SKKWFHEDKEQTL------FECATGENYWDFLNKDSDSLSMFQDAMAADSRLFKLAIQEN 189
Query: 183 CPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMF 242
VF+G+E+LVD+ G G + + +AFP I+ FD P VV + VGGDMF
Sbjct: 190 -KHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVGGDMF 248
Query: 243 DGVPEADAAIIKWVLHDWGDDECIKILKNCKEAIT---KDKGKVIIVEAIIEEDDGVDNK 299
VP ADA ++KWVLHDW D+ +KILKN KEAI+ KD GKVII++ I+E+ D
Sbjct: 249 KSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKD-GKVIIIDISIDENSD-DRG 306
Query: 300 FKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
++L D+VM+ GKER+ KEW+ ++ AGFSRY IT I +SLIE +P
Sbjct: 307 LTELQLEYDVVMLT-MFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 196/343 (57%), Gaps = 11/343 (3%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLL---QRIM 73
A+ ++K+++ F + +K AVE+ I ++ G PI+L+ L S L+ S + +R+M
Sbjct: 16 AQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLM 75
Query: 74 RFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTR 133
R+L H FF+ + + S A T S L+R + +A + P + +H L
Sbjct: 76 RYLAHNGFFEIITKEEESYAL--TVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKW 133
Query: 134 VLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETL 193
+ + F G W + + ++ NDAMA D++L A+ C VFDG+E++
Sbjct: 134 IYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLAL-RDCDFVFDGLESI 192
Query: 194 VDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAII 253
VD+GG GTT + + + FP+++ I FD P VV + + +VGGDMF +P ADA ++
Sbjct: 193 VDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLL 252
Query: 254 KWVLHDWGDDECIKILKNCKEAITKD--KGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM 311
K++LH+W D +C++ILK CKEA+T D +GKV I++ +I+E +N+ ++L++D V
Sbjct: 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKD-ENQVTQIKLLMD-VN 310
Query: 312 MAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
MA N GKER+ +EW + +AGF Y I+ + SLIE +P
Sbjct: 311 MACLN-GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 197/360 (54%), Gaps = 9/360 (2%)
Query: 1 MEETKVQVMMKKEED-DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELA 59
M KV + + E+ A+V +W +++ F N +KCA++LGI + + + G P+TL++L
Sbjct: 1 MALQKVDISLSTEQLLQAQVHVWNHMYAFANSMSLKCAIQLGIPDILHKHGRPMTLSQLL 60
Query: 60 SALKCD---PSLLQRIMRFLIHLKFFKEVPTSQGS-MAFQQTPLSRRLMRHGENNMAAFI 115
++ + QR+MR L++ FF E S + + TP S L++ + +
Sbjct: 61 QSIPINKEKTQCFQRLMRALVNSNFFIEENNSNNQEVCYWLTPASCLLLKEAPLTVTPLV 120
Query: 116 LLESSPVMLAPWHSLGTRVL-ANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRL 174
+ P PWH + + F+ A+G W A + + + ++AM+CD+RL
Sbjct: 121 QVVLDPTFTNPWHHMSEWFTHEKHATQFEAANGCTFWEKLANEPSKGRFFDEAMSCDSRL 180
Query: 175 AMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGV 234
+ V +GI TLVD+GG +GT + + +A P I+ DLPHVV E +
Sbjct: 181 IAHVFTKDYKHVIEGIRTLVDVGGGNGTMAKAIVEAMPTIKCTVIDLPHVVAGLESTDNL 240
Query: 235 EHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294
++GGDMF +P ADA ++K ++HDW D E +KILK CK+A+ GKVII++ ++ +
Sbjct: 241 NYIGGDMFQSIPSADAILLKSIIHDWDDVEGLKILKKCKDAVVMG-GKVIIIDVVVGVNH 299
Query: 295 GVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+D + +L DM MM + N KER++ EW+ ++ AGF Y +T V+SLIEA+P
Sbjct: 300 DIDEVLED-QLHFDMAMMCYFN-AKERTMSEWEKLIYDAGFKSYKLTPAFGVRSLIEAYP 357
|
Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | ||||||
| 255577844 | 345 | o-methyltransferase, putative [Ricinus c | 0.937 | 0.962 | 0.659 | 1e-129 | |
| 225428137 | 353 | PREDICTED: (RS)-norcoclaurine 6-O-methyl | 0.988 | 0.991 | 0.663 | 1e-129 | |
| 224103125 | 354 | flavonoid o-methyltransferase predicted | 0.994 | 0.994 | 0.637 | 1e-128 | |
| 357462673 | 361 | O-methyltransferase [Medicago truncatula | 0.937 | 0.919 | 0.657 | 1e-128 | |
| 224103121 | 356 | flavonoid o-methyltransferase predicted | 0.949 | 0.943 | 0.643 | 1e-127 | |
| 225428135 | 359 | PREDICTED: (RS)-norcoclaurine 6-O-methyl | 0.949 | 0.935 | 0.640 | 1e-127 | |
| 297744546 | 400 | unnamed protein product [Vitis vinifera] | 0.949 | 0.84 | 0.584 | 1e-122 | |
| 255577852 | 353 | o-methyltransferase, putative [Ricinus c | 0.994 | 0.997 | 0.605 | 1e-119 | |
| 356540083 | 366 | PREDICTED: 3'-hydroxy-N-methyl-(S)-cocla | 0.988 | 0.956 | 0.588 | 1e-117 | |
| 255642459 | 366 | unknown [Glycine max] | 0.988 | 0.956 | 0.586 | 1e-117 |
| >gi|255577844|ref|XP_002529795.1| o-methyltransferase, putative [Ricinus communis] gi|223530706|gb|EEF32577.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/335 (65%), Positives = 267/335 (79%), Gaps = 3/335 (0%)
Query: 21 IWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLK 80
+WKYVFGFTNMAVVKCA+ELGIA+A+E + P+TL+EL+S L C PS L RIMRFL+H
Sbjct: 13 MWKYVFGFTNMAVVKCAIELGIADAIENRKEPVTLSELSSTLGCAPSSLYRIMRFLMHQN 72
Query: 81 FFKEVPTSQG-SMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGT 139
FKE+PT QG S+ + TPLSRRL+ GE+NMAAF+LLESSPVMLAPWH L RV NG
Sbjct: 73 IFKEIPTHQGTSIGYVHTPLSRRLLGRGEDNMAAFLLLESSPVMLAPWHFLSARVQQNGR 132
Query: 140 SAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGN 199
+AF+ HG DVW YAAA+ HSKLI+DAMAC+ R A+ IIE CP+VFDGI+TLVD+GG
Sbjct: 133 AAFEAVHGDDVWKYAAANPGHSKLIDDAMACNARTAVTTIIEQCPKVFDGIKTLVDVGGG 192
Query: 200 DGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHD 259
+GT LR L KAFP I+GINFDL HVV +A +C+ V ++GGDMF+ VP+ADAA + WVLHD
Sbjct: 193 NGTALRMLVKAFPWIQGINFDLHHVVSIAHECNNVTYIGGDMFESVPKADAAFLMWVLHD 252
Query: 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGK 319
W DD+CI+ILK CKEA+T+ GKVIIVEA+I E D+K + VRLMLDMVMMAHTN GK
Sbjct: 253 WNDDDCIQILKKCKEAVTEGNGKVIIVEAVIGEAK--DDKLEYVRLMLDMVMMAHTNTGK 310
Query: 320 ERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
ER+ KEW YVL++AGF + I I AVQS+IEAFP
Sbjct: 311 ERTSKEWGYVLQKAGFRSHTIKPIGAVQSVIEAFP 345
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428137|ref|XP_002281120.1| PREDICTED: (RS)-norcoclaurine 6-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/351 (66%), Positives = 280/351 (79%), Gaps = 1/351 (0%)
Query: 5 KVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKC 64
KV +M+KEE +A+VE+WKY+FGF MAVVKC +ELGIA+ +E PITL+ L+S+L C
Sbjct: 3 KVVKIMEKEEAEAEVEMWKYIFGFVEMAVVKCGIELGIADVIESHAGPITLSSLSSSLGC 62
Query: 65 DPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVML 124
PS L RIMRFL++ + FKEV TSQG +QQTPLSRRLM EN MAA +LLESSPVML
Sbjct: 63 SPSGLYRIMRFLVNRRIFKEVATSQGDTGYQQTPLSRRLMTRSENGMAALLLLESSPVML 122
Query: 125 APWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCP 184
APWH L R+L G + FD AHG+DVW YAA+ AHSKLINDAMACD R+A+ AI+ GCP
Sbjct: 123 APWHGLSARLLGKGNATFDAAHGQDVWGYAASHPAHSKLINDAMACDARMAVSAIVNGCP 182
Query: 185 EVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG 244
EVFDG+ TLVD+GG DGT LRTL KA P IRGINFDLPHVV A KC+GVE+ GDMFD
Sbjct: 183 EVFDGVSTLVDVGGGDGTALRTLIKARPLIRGINFDLPHVVSSAPKCNGVEYASGDMFDT 242
Query: 245 VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGV-DNKFKSV 303
VP+ADAA + WVLHDWGD+ECI+IL+ C++AI DKGKVIIVEA+I+E++ DN K V
Sbjct: 243 VPKADAAFLMWVLHDWGDEECIQILEKCRQAIPGDKGKVIIVEAVIQENEKEGDNNLKDV 302
Query: 304 RLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
LMLDMVMMAHT GKER+LKEWDYVL++AGF+RY + I AV+S+IEA+P
Sbjct: 303 GLMLDMVMMAHTTTGKERTLKEWDYVLKKAGFNRYTVKPIRAVKSVIEAYP 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103125|ref|XP_002312934.1| flavonoid o-methyltransferase predicted protein [Populus trichocarpa] gi|222849342|gb|EEE86889.1| flavonoid o-methyltransferase predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/356 (63%), Positives = 274/356 (76%), Gaps = 4/356 (1%)
Query: 1 MEETKVQVMMKKEED-DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEE-KGSPITLNEL 58
ME T MK+EED A VEIWKYV GF+ +AVVKCA+ELGIAEA+E +G+P+ L+EL
Sbjct: 1 MERTSRDSKMKEEEDVQAGVEIWKYVLGFSGIAVVKCAIELGIAEAIENHEGTPMALSEL 60
Query: 59 ASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLE 118
+S L C P L RIMRFL+H FFKE PT QG+ + TPLSRRL+R GE++MA FILLE
Sbjct: 61 SSTLGCVPFSLDRIMRFLVHHHFFKEEPTIQGTAGYVHTPLSRRLLRQGEDSMADFILLE 120
Query: 119 SSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRA 178
SSPVMLAPWH L +RV NGT+AF+ A+G D+W YAAA+ A ++LINDAMACD RLA+ A
Sbjct: 121 SSPVMLAPWHHLSSRVRINGTAAFEAAYGGDIWKYAAANPAFNRLINDAMACDARLAVSA 180
Query: 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVG 238
IIE CP++FDG++TLVD+GG +GT L KAFP I GINFDLPHVV VA +C GV+ VG
Sbjct: 181 IIESCPKLFDGLKTLVDVGGGNGTALGKFVKAFPWIEGINFDLPHVVSVAAECEGVKQVG 240
Query: 239 GDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN 298
GDMFD VP+ADA I VL DW +D+C++ILK CKEAI KDKGKVIIVE +I E+ +
Sbjct: 241 GDMFDSVPKADAVFIMKVLQDWNNDDCVRILKKCKEAIPKDKGKVIIVETVIGEEK--QD 298
Query: 299 KFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
F+ VR M DM MMA TN GKER+ +EWD VL++AGFS YNI I AVQS+IEAFP
Sbjct: 299 SFEFVRFMKDMAMMAFTNSGKERTSEEWDCVLKEAGFSSYNIIPIRAVQSVIEAFP 354
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462673|ref|XP_003601618.1| O-methyltransferase [Medicago truncatula] gi|355490666|gb|AES71869.1| O-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/333 (65%), Positives = 269/333 (80%), Gaps = 1/333 (0%)
Query: 21 IWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLK 80
IWKY+FGF +AVVKCA+ELGIAEA+E+ P++L EL+S LKCD S + RIMRFL+H K
Sbjct: 27 IWKYIFGFVELAVVKCAIELGIAEAIEKHKKPMSLLELSSTLKCDSSYVNRIMRFLVHRK 86
Query: 81 FFKEVPTSQGSM-AFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGT 139
FK + T+ ++ QTPLSRRL+R+GE++M A +LLESSPVM+APW SL RVL NG
Sbjct: 87 IFKTMNTNHDDYPSYVQTPLSRRLIRNGEHSMVAILLLESSPVMVAPWLSLSDRVLVNGN 146
Query: 140 SAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGN 199
+F+K HG+DVW YAA++ HS LINDAMACD ++ + AI+EGC EVFDG+ +LVD+GG
Sbjct: 147 PSFEKVHGEDVWHYAASNLDHSNLINDAMACDAKVVVPAIVEGCSEVFDGVGSLVDVGGG 206
Query: 200 DGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHD 259
+GTT+ L KAFPRIRGINFDLPHV+ VA K GVEHV GDMF VP+ADAAIIKWVLHD
Sbjct: 207 NGTTMSILAKAFPRIRGINFDLPHVIDVAPKYDGVEHVAGDMFTSVPKADAAIIKWVLHD 266
Query: 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGK 319
WGD+ECI+ILKNC+EAI K+ GKVIIVEA+IEE +G NK+K V LMLDMVMMAHTN GK
Sbjct: 267 WGDEECIQILKNCREAIPKENGKVIIVEAVIEEGEGKHNKYKDVGLMLDMVMMAHTNIGK 326
Query: 320 ERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEA 352
ER+LKEW+YV++ AGF + SI+AVQS+I A
Sbjct: 327 ERTLKEWEYVIKMAGFKALIVKSINAVQSVIVA 359
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103121|ref|XP_002312933.1| flavonoid o-methyltransferase predicted protein [Populus trichocarpa] gi|222849341|gb|EEE86888.1| flavonoid o-methyltransferase predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/339 (64%), Positives = 269/339 (79%), Gaps = 3/339 (0%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFL 76
AKVEIWKY+FGFTNMAVVKCA+ELGIA+A+E P+TL+EL+S+L C PS L RIMRFL
Sbjct: 20 AKVEIWKYIFGFTNMAVVKCAIELGIADAIENNEGPMTLSELSSSLGCAPSSLYRIMRFL 79
Query: 77 IHLKFFKEVPTSQ-GSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVL 135
+H FKE P+SQ G+ + QT LSRRL++ GE +M +LLESS VM+APWH+L +RVL
Sbjct: 80 VHHNIFKEKPSSQLGTTVYVQTALSRRLLKKGEKSMVDLLLLESSHVMMAPWHNLSSRVL 139
Query: 136 ANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVD 195
+ S F+ AHG D+W YA A+ HSKLI+DAMACD +L + I+EG PEVFDG++TLVD
Sbjct: 140 NDNNSPFEGAHGDDIWKYALANPVHSKLIDDAMACDAKLVVPEIVEGFPEVFDGVKTLVD 199
Query: 196 IGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKW 255
+GG +GTTL+ L KAFP I+GINFDLPHVV VA + GV+HVGGD F+ VP+ADAA + W
Sbjct: 200 VGGGNGTTLQMLVKAFPWIQGINFDLPHVVSVASESEGVKHVGGDFFESVPKADAAFLMW 259
Query: 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315
VLHDW D+ECI+ILKNCKEAI DKGKVIIVEA++ E+ G +K + VRLMLDMVMM+HT
Sbjct: 260 VLHDWNDEECIQILKNCKEAIQSDKGKVIIVEAVVGEEKG--DKLEFVRLMLDMVMMSHT 317
Query: 316 NKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+ GKER+ KEW YVL++AGFS Y I I AVQS+I A P
Sbjct: 318 DAGKERTSKEWGYVLKEAGFSSYTIKPIRAVQSVIVASP 356
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428135|ref|XP_002281110.1| PREDICTED: (RS)-norcoclaurine 6-O-methyltransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/339 (64%), Positives = 260/339 (76%), Gaps = 3/339 (0%)
Query: 19 VEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIH 78
+E+WKY++GF MA VKC +ELGIA+ +E G PITL+ L+S+L C PS L RIMRFL+
Sbjct: 21 IEMWKYIYGFAEMAAVKCGIELGIADVMESHGGPITLSALSSSLGCPPSGLNRIMRFLVS 80
Query: 79 LKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANG 138
+ FKEV TSQG +QQTP+SR LM G + MAAF+LLESSPVMLAPWH L RVL G
Sbjct: 81 RRIFKEVATSQGDTGYQQTPMSRCLMTSGGDGMAAFVLLESSPVMLAPWHGLSARVLGKG 140
Query: 139 TSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGG 198
S F+ AHG D+W YAA + HSKLINDAMA + R + A++ CPEVFDG+ TLVD+GG
Sbjct: 141 NSTFEAAHGDDIWGYAAKNPDHSKLINDAMASNARRVVPAMVNDCPEVFDGVSTLVDVGG 200
Query: 199 NDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLH 258
+GT LRTL KA P IRGINFDLPHVV A KC+ VEHVGG+MFD VP+ADA I VLH
Sbjct: 201 GNGTALRTLVKACPWIRGINFDLPHVVATAPKCNDVEHVGGNMFDSVPKADAVFIMKVLH 260
Query: 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD--GVDNKFKSVRLMLDMVMMAHTN 316
DWGD++CIKIL+ C+EAI +DKGKV+IVEA+IE+ D G D K K V+LM+DMVMMAHT
Sbjct: 261 DWGDEKCIKILEKCREAIPEDKGKVVIVEAVIEDGDPQGDDQKLKDVKLMVDMVMMAHTT 320
Query: 317 KGKERSLKEWDYVLRQAGFSRYNITSI-HAVQSLIEAFP 354
GKER+ KEWDYVL AGFSRY I I + VQS+IEA+P
Sbjct: 321 TGKERTFKEWDYVLLNAGFSRYTIKPIRNIVQSIIEAYP 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744546|emb|CBI37808.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/373 (58%), Positives = 261/373 (69%), Gaps = 37/373 (9%)
Query: 19 VEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIH 78
+E+WKY++GF MA VKC +ELGIA+ +E G PITL+ L+S+L C PS L RIMRFL+
Sbjct: 28 IEMWKYIYGFAEMAAVKCGIELGIADVMESHGGPITLSALSSSLGCPPSGLNRIMRFLVS 87
Query: 79 LKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANG 138
+ FKEV TSQG +QQTP+SR LM G + MAAF+LLESSPVMLAPWH L RVL G
Sbjct: 88 RRIFKEVATSQGDTGYQQTPMSRCLMTSGGDGMAAFVLLESSPVMLAPWHGLSARVLGKG 147
Query: 139 TSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGG 198
S F+ AHG D+W YAA + HSKLINDAMA + R + A++ CPEVFDG+ TLVD+GG
Sbjct: 148 NSTFEAAHGDDIWGYAAKNPDHSKLINDAMASNARRVVPAMVNDCPEVFDGVSTLVDVGG 207
Query: 199 NDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAII----- 253
+GT LRTL KA P IRGINFDLPHVV A KC+ VEHVGG+MFD VP+ADA I
Sbjct: 208 GNGTALRTLVKACPWIRGINFDLPHVVATAPKCNDVEHVGGNMFDSVPKADAVFIMKVLH 267
Query: 254 KW-----------------------------VLHDWGDDECIKILKNCKEAITKDKGKVI 284
W VLHDWGD++CIKIL+ C+EAI +DKGKV+
Sbjct: 268 DWGDEKCIKILEKCREAIPEDKGKVVIVEAKVLHDWGDEKCIKILEKCREAIPEDKGKVV 327
Query: 285 IVEAIIEEDD--GVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITS 342
IVEA+IE+ D G D K K V+LM+DMVMMAHT GKER+ KEWDYVL AGFSRY I
Sbjct: 328 IVEAVIEDGDPQGDDQKLKDVKLMVDMVMMAHTTTGKERTFKEWDYVLLNAGFSRYTIKP 387
Query: 343 I-HAVQSLIEAFP 354
I + VQS+IEA+P
Sbjct: 388 IRNIVQSIIEAYP 400
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577852|ref|XP_002529799.1| o-methyltransferase, putative [Ricinus communis] gi|223530710|gb|EEF32581.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/355 (60%), Positives = 273/355 (76%), Gaps = 3/355 (0%)
Query: 1 MEETK-VQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELA 59
ME+T+ ++ EE++A VEIW YV GF+ +A VKCA+ELG+A+ +E +P+TL EL+
Sbjct: 1 MEDTRRSDSTIRDEEEEADVEIWNYVLGFSKIAAVKCAIELGLADVIESNEAPLTLFELS 60
Query: 60 SALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLES 119
S L C PS L RIMRFL+H K FKE PTSQG+ + QTPLSRRL+R GEN+MA FIL+ES
Sbjct: 61 STLGCAPSSLYRIMRFLVHQKIFKEKPTSQGTTGYVQTPLSRRLLRQGENSMADFILMES 120
Query: 120 SPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAI 179
SP MLAPW L V N SAF+++HG+ +W + A+ AHSKL NDAMACD R+ + +I
Sbjct: 121 SPDMLAPWQCLSNCVRGNVHSAFEESHGQHLWKHTEANPAHSKLFNDAMACDARIIVPSI 180
Query: 180 IEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGG 239
IE CPEVF+G++++VD+GG +GTTL L KA P I+GINFDLPHVV VA +C GV+HVGG
Sbjct: 181 IEVCPEVFNGVKSVVDVGGGNGTTLGLLVKACPWIQGINFDLPHVVSVALECDGVKHVGG 240
Query: 240 DMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNK 299
DMFD VP+ADAA + WVLHDW DDECI+ILK CKEA+ +D GKVIIVEA+I E D+K
Sbjct: 241 DMFDSVPQADAAFLMWVLHDWNDDECIQILKKCKEAVPEDNGKVIIVEAVIGE--AKDDK 298
Query: 300 FKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
F+ VRLMLD+V+MAHTN GKE + KEW+ V+++AGF + I I AVQS+IEA P
Sbjct: 299 FEYVRLMLDIVIMAHTNTGKETTSKEWESVIQKAGFRSHTIKPIGAVQSIIEAVP 353
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540083|ref|XP_003538520.1| PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/360 (58%), Positives = 276/360 (76%), Gaps = 10/360 (2%)
Query: 1 MEETKVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELAS 60
M T+ + ++EE++A+++IWKY+FGF +AV+KCA+ELGIAEA+E+ GSP+TL+E++S
Sbjct: 9 MSSTRWEKEEEEEEEEAQMDIWKYIFGFVELAVIKCAIELGIAEAIEKHGSPMTLSEISS 68
Query: 61 ALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESS 120
+L CD S L+RIMRFL+ K FK S+G + Q+ LSRRLMR+GE++MA+F+LLESS
Sbjct: 69 SLGCDTSHLKRIMRFLVQRKIFKGDGCSRG---YSQSALSRRLMRNGEHSMASFLLLESS 125
Query: 121 PVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAII 180
PVMLAPWHSL RV+ANG +F KAHG+DVW YAAA+ HS LIN+AMACD +L M II
Sbjct: 126 PVMLAPWHSLSARVMANGNPSFAKAHGEDVWRYAAANLDHSNLINEAMACDAKLVMPIII 185
Query: 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAE-KCHGVEHVGG 239
+ C E F G+++LVD+GG +GT +R L KA P IR INFDLPHV+ + + GV+HV G
Sbjct: 186 QSCSEAFHGLKSLVDVGGGNGTAMRILAKACPSIRPINFDLPHVIALCDGDGDGVQHVSG 245
Query: 240 DMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAI--TKDKGKVIIVEAIIEEDDGV- 296
DMF VP+ADAA + WVLHDW D+ECI+ILK C+EAI +K+ G+VIIVEA+IE +
Sbjct: 246 DMFLSVPKADAAFLMWVLHDWSDEECIQILKKCREAISNSKENGRVIIVEAVIEGEGEGE 305
Query: 297 ---DNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAF 353
+ K V LMLDMVMMAHTN GKER+LKEW+YV++ AGFS Y + IHAVQS+I AF
Sbjct: 306 GGKHDGLKDVGLMLDMVMMAHTNFGKERTLKEWEYVIKMAGFSSYTVKPIHAVQSVIMAF 365
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255642459|gb|ACU21493.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/360 (58%), Positives = 276/360 (76%), Gaps = 10/360 (2%)
Query: 1 MEETKVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELAS 60
M T+ + ++EE++A+++IWKY+FGF +AV+KCA+ELGIAEA+E+ GSP+TL+E++S
Sbjct: 9 MSSTRWEKEEEEEEEEAQMDIWKYIFGFVELAVIKCAIELGIAEAIEKHGSPMTLSEISS 68
Query: 61 ALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESS 120
+L CD S L+RIMRFL+ K FK S+G + Q+ LSRRLMR+GE++MA+F+LLESS
Sbjct: 69 SLGCDTSHLKRIMRFLVQRKIFKGDGCSRG---YSQSALSRRLMRNGEHSMASFLLLESS 125
Query: 121 PVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAII 180
PVMLAPWHSL RV+ANG +F KAHG+DVW YAAA+ HS LIN+AMACD +L M II
Sbjct: 126 PVMLAPWHSLSARVMANGNPSFAKAHGEDVWRYAAANLDHSNLINEAMACDAKLVMPIII 185
Query: 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAE-KCHGVEHVGG 239
+ C E F G+++LVD+GG +GT +R L KA P IR INFDLPHV+ + + GV+HV G
Sbjct: 186 QSCSEAFHGLKSLVDVGGGNGTAMRILAKACPSIRPINFDLPHVIALCDGDGDGVQHVSG 245
Query: 240 DMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAI--TKDKGKVIIVEAIIEEDDGV- 296
DMF VP+ADAA + WVLHDW D+ECI+IL+ C+EAI +K+ G+VIIVEA+IE +
Sbjct: 246 DMFLSVPKADAAFLMWVLHDWSDEECIQILRKCREAISNSKENGRVIIVEAVIEGEGEGE 305
Query: 297 ---DNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAF 353
+ K V LMLDMVMMAHTN GKER+LKEW+YV++ AGFS Y + IHAVQS+I AF
Sbjct: 306 GGKHDGLKDVGLMLDMVMMAHTNFGKERTLKEWEYVIKMAGFSSYTVKPIHAVQSVIMAF 365
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 354 | ||||||
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.991 | 0.918 | 0.513 | 3e-92 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.593 | 0.646 | 0.527 | 1e-84 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.977 | 0.945 | 0.368 | 6.4e-60 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.971 | 0.969 | 0.363 | 1.4e-57 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.960 | 0.977 | 0.338 | 1.3e-54 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.957 | 0.928 | 0.362 | 1e-52 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.946 | 0.912 | 0.371 | 2.7e-52 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.932 | 0.924 | 0.333 | 1.1e-48 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.887 | 0.865 | 0.327 | 1.6e-45 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.646 | 0.612 | 0.358 | 5.9e-44 |
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 189/368 (51%), Positives = 243/368 (66%)
Query: 1 MEETKVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGS--PITLNEL 58
ME+ K +V+ EE A ++IWKYVFGF ++A KCA++L I EA+E S P+TL EL
Sbjct: 15 MEDNKRKVL--DEEAKASLDIWKYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLAEL 72
Query: 59 ASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG-SMAFQQTPLSRRLM--RHGENNMAAFI 115
+SA+ PS L+RIMRFL+H FKE+PT G + + TPLSRRLM R ++A F+
Sbjct: 73 SSAVSASPSHLRRIMRFLVHQGIFKEIPTKDGLATGYVNTPLSRRLMITRRDGKSLAPFV 132
Query: 116 LLESSPVMLAPWHSLGTRVLA--NGTSA--FDKAHGKDVWSYAAADAAHSKLINDAMACD 171
L E++P MLAPW L + V + NG++ FD HGKDVWS+A + S +IN+AMACD
Sbjct: 133 LFETTPEMLAPWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACD 192
Query: 172 TRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKC 231
R + + C +FDG+ T+VD+GG G T+ L K FP I+G NFDLPHV+ VAE
Sbjct: 193 ARRVVPRVAGACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVL 252
Query: 232 HGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKXXXXXXXXX 291
GVE+V GDMFD +P DA IKWVLHDWGD +CIKILKNCKEA+ + GK
Sbjct: 253 DGVENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPNIGKVLIVESVIG 312
Query: 292 XXXXXX------NKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHA 345
K + VRLMLDMVMMAHT+ GKER+LKEWD+VL++AGF+RY + I
Sbjct: 313 ENKKTMIVDERDEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDD 372
Query: 346 VQSLIEAF 353
VQSLI A+
Sbjct: 373 VQSLIIAY 380
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 114/216 (52%), Positives = 145/216 (67%)
Query: 144 KAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTT 203
K HGKD+W++A + HS+LIN+AMACD R + + C +FDG+ T+VD+GG G T
Sbjct: 108 KLHGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGET 167
Query: 204 LRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDD 263
+ L K FP I+G NFDLPHV+ VA+ GVE+V GDMFD +P +DA IIKWVLHDWGD
Sbjct: 168 MGILVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDK 227
Query: 264 ECIKILKNCKEAITKDKGKXXXXX------XXXXXXXXXXNKFKSVRLMLDMVMMAHTNK 317
+CIKILKNCKEA+ + GK +K + VRL LDMVMM HT+
Sbjct: 228 DCIKILKNCKEAVLPNIGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTST 287
Query: 318 GKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAF 353
GKER+LKEWD+VL +AGF+RY + VQSLI A+
Sbjct: 288 GKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
|
|
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 133/361 (36%), Positives = 197/361 (54%)
Query: 8 VMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS 67
+ K+E +A+ +W +++ + N +KCA++LGI +A+ + G+PITL++LA AL + +
Sbjct: 7 ISSKQELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKA 66
Query: 68 L---LQRIMRFLIHLKFFKEVPTS---QGSM------AFQQTPLSRRLMRHGENNMAAFI 115
L R+MR L+H FF +V +G A+ TP SR L+R ++A F
Sbjct: 67 KSHGLFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFA 126
Query: 116 LLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLA 175
L S PV WH L + +AFD +G YA AD + L N+AMACD
Sbjct: 127 LAMSDPVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFV 186
Query: 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVE 235
+ C E+FDG+E++VD+GG G T + + AFP + DLP+VV + +
Sbjct: 187 NSILTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLS 246
Query: 236 HVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKG--KXXXXXXXXXXX 293
V GDMFD +P ADA +K++LHDW D+EC+KILK CKEAI++ +
Sbjct: 247 FVSGDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMED 306
Query: 294 XXXXNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAF 353
++ +L DM M+A GKERS KEW + AGF+ Y IT + ++S+IE F
Sbjct: 307 EKETHEATETKLFFDMQMLAIIT-GKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVF 365
Query: 354 P 354
P
Sbjct: 366 P 366
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 129/355 (36%), Positives = 196/355 (55%)
Query: 9 MMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL--KCDP 66
+ +E A+ +IW F A +KCAV+LGI + ++ G PITL+EL +AL P
Sbjct: 3 VQSEEFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPVHP 62
Query: 67 S---LLQRIMRFLIHLKFFKEVPTS-QGSMAFQQTPLSRRLMRHGENNMAAFILLESSPV 122
S + R+MR L F E + + TP SR L++ N+ +L + PV
Sbjct: 63 SKAPFIYRLMRVLAKNGFCSEEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPV 122
Query: 123 MLAPWHSLGT--RVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAII 180
L W SL + + ++AF+ AHGK+ W Y++ H++ N+AMA D++L + +I
Sbjct: 123 QLKAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLI 182
Query: 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGD 240
+F+G+ +LVDIGG GT + + K FP+++ FDLPHVV E VE V GD
Sbjct: 183 GEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAGD 242
Query: 241 MFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKXXXXXXXXXXXXXXXNKF 300
MF+ +P A+A +KW+LHDW D++C+KILK+CK+AI GK +
Sbjct: 243 MFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKGGKVIIIDMVMYSDKKDDHLV 302
Query: 301 KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI-TSIHAVQSLIEAFP 354
K+ + +DM M+ + KER KEW ++ ++AGFS Y I + +SLIE +P
Sbjct: 303 KT-QTSMDMAMLVNF-AAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 119/352 (33%), Positives = 196/352 (55%)
Query: 9 MMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS- 67
+ E +A+ + VF FT+M+ +KCAV+LGI +A+ G P+ L++L ++L +PS
Sbjct: 3 LQSSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSK 62
Query: 68 --LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLA 125
+ R+MR L+ +F E + + TP +R L+++ N + +L + L
Sbjct: 63 APYIYRLMRILVAAGYFSE----EEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELK 118
Query: 126 PWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPE 185
W+++ +AF+ AHGK+ W + A D + K + MA D+ L + +I
Sbjct: 119 AWNAMSEWFQNEDLTAFETAHGKNFWDFGAEDK-YGKNFDGVMAADSILVSKMLIPEFNY 177
Query: 186 VFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGV 245
+F+G+++LVD+GG GT + + K+FP ++ FDLPHVV E +E VGGDMF+ +
Sbjct: 178 LFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDMFEKI 237
Query: 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAIT-KDKGKXXXXXXXXXXXXXXXNKFKSVR 304
P A+A ++KW+LHDW D+EC+K+LK C++AI K+KG ++V+
Sbjct: 238 PSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENEEAVK 297
Query: 305 LML--DMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+ D+ MM KER+ +EW + R+AGFS Y I + +S IE +P
Sbjct: 298 AQISSDIDMMVFFT-AKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 129/356 (36%), Positives = 188/356 (52%)
Query: 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS---LL 69
E A++ ++K+V+ F + +K A+ELGIA+ + G PITL ELA+AL PS +L
Sbjct: 13 ELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELATALNLRPSKIGVL 72
Query: 70 QRIMRFLIHLKFFKEVPTSQGSMAFQQT-----PLSRRLMRHGENNMAAFILLESSPVML 124
R +R L H FF + S+G A ++T P S+ L++ +A + P L
Sbjct: 73 HRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGALHPSSL 132
Query: 125 APWHSLGTRVLANGT--SAFDKAHGKDVWSYAAADAAHSKL--INDAMACDTRLAMRAII 180
W S L + + F+ A G+ W + + L +AMA D+ + A+
Sbjct: 133 DMWRSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSHMFKLALK 192
Query: 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGD 240
E C VF+G+ +LVD+ G G + + +AFP ++ FD P VV + VGGD
Sbjct: 193 E-CKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENLNFVGGD 251
Query: 241 MFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKXXXXXXXXXXXXXXXN-- 298
MF VP ADA ++KWVLHDW D+ +KILKNCKEAI+ +GK +
Sbjct: 252 MFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAIS-GRGKEGKVIIIDISIDETSDDR 310
Query: 299 KFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+ ++L D+VM+ N GKER KEW+ ++ AGFS Y IT I +SLIE FP
Sbjct: 311 ELTELKLDYDLVMLTMFN-GKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 132/355 (37%), Positives = 189/355 (53%)
Query: 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS---LLQRIM 73
A++ ++K+V+ F + +K A+ELGIA+ + G PITL ELASALK PS +L R +
Sbjct: 16 AQIHLYKHVYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHPSKVGILYRFL 75
Query: 74 RFLIHLKFFKE--VPTSQGS-------MAFQQTPLSRRLMRHGENNMAAFILLESSPVML 124
R L H FF + VP+ G A+ TP S+ L++ +A+ + P L
Sbjct: 76 RLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALHPSSL 135
Query: 125 APWHSLGTRVLANGT-SAFDKAHGKDVWSYAAADAAHSKL--INDAMACDTRLAMRAIIE 181
W S + + F+ A G+ W + D+ L +AMA D+++ A+ E
Sbjct: 136 DMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQMFKLALKE 195
Query: 182 GCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDM 241
C VF+G+E+LVD+GG G + + + FP ++ FD P VV ++ VGGDM
Sbjct: 196 -CRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFVGGDM 254
Query: 242 FDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKXXXXXXXXXXXXXXXNKFK 301
F +P ADA ++KWVLHDW D+ +KILKN KEAI+ KGK +
Sbjct: 255 FKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAIS-GKGKEGKVIIIDISIDEASGDRE 313
Query: 302 SVRLMLD--MVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
L LD +VM+ N GKER KEW+ ++ AGFS Y IT I +SLIE FP
Sbjct: 314 LTELQLDYDLVMLTMFN-GKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 114/342 (33%), Positives = 185/342 (54%)
Query: 21 IWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSL---LQRIMRFLI 77
++++++ F + +K VEL I + G PIT++EL S LK + +QRIMR++
Sbjct: 20 LYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVPQTKAGNVQRIMRYMA 79
Query: 78 HLKFFKEV---PTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRV 134
H FF+ V + + A+ T S L++ E +A + P + +H L +
Sbjct: 80 HNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGSYHQLKKWI 139
Query: 135 LANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLV 194
+ F + G W + + ++K NDAMA D+++ A+ + C F+G+E++V
Sbjct: 140 YEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMINLALRD-CNSGFEGVESIV 198
Query: 195 DIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIK 254
D+GG GTT + + FP ++ I FD P VV + + +VGGDMF VP+ADA ++K
Sbjct: 199 DVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVPKADAVLLK 258
Query: 255 WVLHDWGDDECIKILKNCKEAITKD--KGKXXXXXXXXXXXXXXXNKFKSVRLMLDMVMM 312
W+LH+W D++C +IL+ CKEA++ D KGK ++ +L++D V M
Sbjct: 259 WILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDE-HEITGTKLLMD-VNM 316
Query: 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
A N GKERS +EW + +AGF Y I+ + SLIE +P
Sbjct: 317 ACLN-GKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 107/327 (32%), Positives = 176/327 (53%)
Query: 34 VKCAVELGIAEAVEEKGSPITLNELASALKCD----PSLLQRIMRFLIHLKFF----KEV 85
+K A+EL + E + + GSP++ E+AS L P +L RI+R L +++
Sbjct: 36 LKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKL 95
Query: 86 PTSQGSMAFQQTPLSRRLMRHGEN-NMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDK 144
+ P+ + L ++ + ++AA L+ V++ W+ L +L G F+K
Sbjct: 96 SGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIP-FNK 154
Query: 145 AHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTL 204
A+G + Y D +K+ N+ M+ + + M+ I+E + F+G+ +LVD+GG G TL
Sbjct: 155 AYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETY-KGFEGLTSLVDVGGGIGATL 213
Query: 205 RTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDE 264
+ + +P ++GINFDLPHV+ A G+EHVGGDMF VP+ DA +KW+ HDW D+
Sbjct: 214 KMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEH 273
Query: 265 CIKILKNCKEAITKDKGKXXXXXXXXXXXXXXXNKFKSVRLMLDMVMMAHTNKGKERSLK 324
C+K LKNC E++ +D GK K V + +D +M+AH GKER+ K
Sbjct: 274 CVKFLKNCYESLPED-GKVILAECILPETPDSSLSTKQV-VHVDCIMLAHNPGGKERTEK 331
Query: 325 EWDYVLRQAGFSRYNITSIHAVQSLIE 351
E++ + + +GF + +LIE
Sbjct: 332 EFEALAKASGFKGIKVVCDAFGVNLIE 358
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 84/234 (35%), Positives = 122/234 (52%)
Query: 124 LAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGC 183
L W A G F +G +W D A + L N+AMA D+ M+ +++
Sbjct: 143 LTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFLMQILLKEF 202
Query: 184 PEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCH--GVEHVGGDM 241
EVF GI++LVD+ G G + AFP ++ DLPHVV A V+ VGGDM
Sbjct: 203 SEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDM 262
Query: 242 FDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAI-TKDKGKXXXXXXXXXXXXXXXNKF 300
F+ +P A+ ++KW+LHDW +DECIKILKNCK+AI ++D G K
Sbjct: 263 FESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKL 322
Query: 301 KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+++ D+ +M G ER +EW + +AGF Y I I ++S+IE +P
Sbjct: 323 LETQVIYDLHLMKIG--GVERDEQEWKKIFLEAGFKDYKIMPILGLRSIIELYP 374
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 354 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 3e-83 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 4e-10 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 5e-07 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 3e-83
Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 90 GSMAFQQTPLSRRLMR-HGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGK 148
G + TP S+ L++ ++A +L+ + P +L W L V G F++A G
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVR-EGGPPFERAFGM 61
Query: 149 DVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLT 208
+ Y AD +++ N AMA +RL M+ I+E F G+ +LVD+GG G +
Sbjct: 62 PFFEYLGADPEFNRVFNRAMAAHSRLVMKKILE-TAFDFSGLSSLVDVGGGTGALAAAIV 120
Query: 209 KAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKI 268
+A+P I+GI FDLPHV+ A VE VGGD F+ VPEADA ++KWVLHDW D++C+KI
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKI 180
Query: 269 LKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327
LK C EA+ GKVI+VE ++ ED D+ V L+ D+ M+ N GKER+ KEW
Sbjct: 181 LKRCYEALPPG-GKVIVVEMVLPEDPD-DDLETEVLLL-DLNMLVL-NGGKERTEKEWR 235
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-10
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 33 VVKCAVELGIAEAVEEKGSPITLNELASALKC----DPSLLQRIMRFL 76
V+KCA+ELGI + + + G P++ +ELAS L P +L R++R L
Sbjct: 2 VLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLL 49
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 5e-07
Identities = 45/277 (16%), Positives = 104/277 (37%), Gaps = 40/277 (14%)
Query: 33 VVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM 92
+K A+EL + + E P L LA+ P R+ L L+ + + +
Sbjct: 6 CMKAAIELDLFSHMAE--GPKDLATLAADTGSVPP---RLEMLLETLRQMRVI-NLEDG- 58
Query: 93 AFQQTPLSRRLM----RHGENNMAAFI-----LLESSPVMLAPWHSLGTRVLANGTSAFD 143
+ T + + + + L + + L+ ++ + G +
Sbjct: 59 KWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLS--QAVRGQKNFKGQVPYP 116
Query: 144 KAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTT 203
+D + +++K + + +L G++ ++D+GG G
Sbjct: 117 PVTREDNLYFEEIHRSNAKFAIQLLLEEAKLD-------------GVKKMIDVGGGIGDI 163
Query: 204 LRTLTKAFPRIRGINFDLPHVV-----CVAEK--CHGVEHVGGDMF-DGVPEADAAIIKW 255
+ K FP + +LP + AEK + + D++ + PEADA +
Sbjct: 164 SAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 223
Query: 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292
+L+ + + K +A+ G+++I++ +I++
Sbjct: 224 ILYSANEQLSTIMCKKAFDAMRSG-GRLLILDMVIDD 259
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.78 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.76 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.75 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.75 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.75 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.7 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.69 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.67 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.67 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.67 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.66 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.66 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.65 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.65 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.65 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.63 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.6 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.57 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.57 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.56 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.55 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.53 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.51 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.51 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.5 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.48 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.47 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.47 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.47 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.47 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.47 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.46 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.46 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.46 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.46 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.46 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.45 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.44 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.43 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.43 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.41 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.39 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.38 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.37 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.36 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.35 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.34 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.33 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.32 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.31 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.3 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.3 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.3 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.29 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.26 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.25 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.23 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.2 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.2 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.2 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.18 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.18 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.17 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.16 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.16 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.13 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.12 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.12 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.11 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.11 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.1 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.08 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.07 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.06 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.06 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.06 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.05 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.05 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.02 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.02 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.02 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.02 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.01 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.01 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.99 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.96 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.96 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.95 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.94 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.92 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.92 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.91 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.91 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.9 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.9 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.89 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.88 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.85 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.85 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.83 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.81 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.8 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.8 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.76 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.75 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.75 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.73 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.72 | |
| PLN02366 | 308 | spermidine synthase | 98.71 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.71 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.71 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.71 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.7 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.68 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.66 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.65 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.65 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.64 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.64 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.64 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.63 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.62 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.62 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.61 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.58 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.56 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.55 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.53 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.5 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.48 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.47 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.46 | |
| PLN02476 | 278 | O-methyltransferase | 98.46 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.43 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.43 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.41 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.41 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.4 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.39 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.38 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.38 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.37 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.34 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.34 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.3 | |
| PLN02823 | 336 | spermine synthase | 98.25 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.25 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.23 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.19 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.17 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.17 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.14 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.13 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.13 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.1 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.09 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.09 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.07 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.06 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.01 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.01 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.98 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.96 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.96 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.95 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.94 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.91 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.88 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.88 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.83 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.83 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.81 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.78 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.76 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.76 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.75 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.75 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 97.68 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.63 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.54 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.51 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.47 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.46 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.44 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.43 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.42 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.41 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 97.39 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.38 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.36 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.34 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.32 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.3 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 97.27 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 97.26 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.26 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.25 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.24 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.21 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.17 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 97.16 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 97.15 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.13 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.12 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.12 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.11 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.09 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.05 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.05 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 97.03 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.01 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.99 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.96 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.94 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.91 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 96.9 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.89 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.87 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.87 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.84 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 96.82 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 96.82 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.78 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.76 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.73 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.72 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 96.68 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 96.67 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 96.64 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 96.62 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 96.62 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.61 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.6 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 96.6 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.58 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 96.58 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 96.54 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.54 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.46 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.45 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.45 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.42 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 96.36 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 96.17 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 96.14 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.03 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 96.03 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 95.95 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.94 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 95.89 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.88 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.86 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 95.85 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 95.82 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 95.82 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.81 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 95.79 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 95.77 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 95.75 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.67 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 95.63 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 95.62 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 95.62 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.59 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 95.45 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 95.39 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.36 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.32 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 95.27 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 95.26 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 95.22 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 95.12 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 95.09 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 95.08 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 95.07 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 95.04 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 95.03 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 94.99 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.99 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 94.96 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 94.91 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.89 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 94.88 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 94.81 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 94.81 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 94.81 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 94.79 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.75 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.73 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 94.72 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.68 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 94.66 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 94.65 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.61 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 94.59 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.53 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.52 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 94.52 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 94.47 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 94.45 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 94.45 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 94.43 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 94.38 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.35 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 94.32 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 94.16 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 94.13 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 93.96 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 93.83 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.79 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.75 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.65 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.62 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 93.54 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 93.37 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 93.33 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 93.15 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.1 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.09 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 92.87 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 92.81 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 92.79 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 92.78 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 92.75 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 92.66 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 92.44 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 92.38 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 92.19 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 92.16 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 92.15 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 92.07 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 92.06 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 92.05 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 91.83 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.78 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 91.73 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 91.52 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 91.47 | |
| PF02319 | 71 | E2F_TDP: E2F/DP family winged-helix DNA-binding do | 91.31 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 91.14 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 91.02 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 90.81 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 90.6 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 90.51 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 90.47 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 90.43 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 90.35 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 90.27 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 90.21 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 89.96 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 89.73 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 89.61 | |
| COG3413 | 215 | Predicted DNA binding protein [General function pr | 89.47 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 89.44 | |
| PF01475 | 120 | FUR: Ferric uptake regulator family; InterPro: IPR | 89.37 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.36 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 89.25 | |
| PF12324 | 77 | HTH_15: Helix-turn-helix domain of alkylmercury ly | 89.07 | |
| PF05584 | 72 | Sulfolobus_pRN: Sulfolobus plasmid regulatory prot | 88.61 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 88.59 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 88.48 | |
| PRK09775 | 442 | putative DNA-binding transcriptional regulator; Pr | 88.28 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 88.27 | |
| PRK05638 | 442 | threonine synthase; Validated | 88.24 | |
| PF13404 | 42 | HTH_AsnC-type: AsnC-type helix-turn-helix domain; | 88.19 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 88.14 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 87.85 | |
| PF08784 | 102 | RPA_C: Replication protein A C terminal; InterPro: | 87.82 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 87.79 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 87.58 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 87.57 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 87.39 | |
| PF05732 | 165 | RepL: Firmicute plasmid replication protein (RepL) | 87.33 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 87.27 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 87.2 | |
| PF08221 | 62 | HTH_9: RNA polymerase III subunit RPC82 helix-turn | 87.17 | |
| TIGR02147 | 271 | Fsuc_second hypothetical protein, TIGR02147. This | 87.07 | |
| PF14338 | 92 | Mrr_N: Mrr N-terminal domain | 87.06 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 86.8 | |
| PRK00215 | 205 | LexA repressor; Validated | 86.68 | |
| PRK11886 | 319 | bifunctional biotin--[acetyl-CoA-carboxylase] synt | 86.25 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 86.24 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 85.75 | |
| COG1510 | 177 | Predicted transcriptional regulators [Transcriptio | 85.48 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 85.47 | |
| PRK09462 | 148 | fur ferric uptake regulator; Provisional | 84.89 | |
| PRK12423 | 202 | LexA repressor; Provisional | 84.68 | |
| PRK10906 | 252 | DNA-binding transcriptional repressor GlpR; Provis | 84.43 | |
| PRK10411 | 240 | DNA-binding transcriptional activator FucR; Provis | 84.17 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 83.94 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 83.65 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 83.33 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 83.23 | |
| PF09821 | 120 | AAA_assoc_C: C-terminal AAA-associated domain; Int | 83.18 | |
| PF13518 | 52 | HTH_28: Helix-turn-helix domain | 83.08 | |
| PF06969 | 66 | HemN_C: HemN C-terminal domain; InterPro: IPR01072 | 82.69 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 82.64 | |
| PRK10046 | 225 | dpiA two-component response regulator DpiA; Provis | 82.62 | |
| PRK10434 | 256 | srlR DNA-bindng transcriptional repressor SrlR; Pr | 82.26 | |
| PRK09802 | 269 | DNA-binding transcriptional regulator AgaR; Provis | 82.22 | |
| PF00165 | 42 | HTH_AraC: Bacterial regulatory helix-turn-helix pr | 82.21 | |
| COG1654 | 79 | BirA Biotin operon repressor [Transcription] | 82.21 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 82.12 | |
| TIGR02787 | 251 | codY_Gpos GTP-sensing transcriptional pleiotropic | 82.02 | |
| PF13384 | 50 | HTH_23: Homeodomain-like domain; PDB: 2X48_C. | 81.98 | |
| COG0735 | 145 | Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani | 81.98 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 81.9 | |
| PF09904 | 90 | HTH_43: Winged helix-turn helix; InterPro: IPR0171 | 81.84 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 81.71 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 81.49 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 81.36 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 81.26 | |
| PF02796 | 45 | HTH_7: Helix-turn-helix domain of resolvase; Inter | 81.12 | |
| TIGR03879 | 73 | near_KaiC_dom probable regulatory domain. This mod | 81.07 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 81.06 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 80.99 | |
| COG1349 | 253 | GlpR Transcriptional regulators of sugar metabolis | 80.83 | |
| PF05331 | 114 | DUF742: Protein of unknown function (DUF742); Inte | 80.48 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 80.47 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 80.14 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 80.03 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=308.74 Aligned_cols=333 Identities=38% Similarity=0.667 Sum_probs=287.7
Q ss_pred cchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcC-----CCcccHHHHHHHHhccCceeeccCC
Q 018565 14 EDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALK-----CDPSLLQRIMRFLIHLKFFKEVPTS 88 (354)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g-----~~~~~l~~lL~~L~~~g~l~~~~~~ 88 (354)
..+...+++++++++...+++++|+||||||.|.++++ ..|||..+. .+|..+.|+||.|++.++++..-..
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~~---p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~ 79 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAGS---PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG 79 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCCC---HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence 34566789999999999999999999999999998422 666666665 4677999999999999999888631
Q ss_pred CCCceEecCcccchhhc-CCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHH
Q 018565 89 QGSMAFQQTPLSRRLMR-HGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDA 167 (354)
Q Consensus 89 ~~~~~y~~t~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (354)
++ .|++++.++++.+ .+..++..++...++...++.|.++.+++..++ .+|..++|...++|...+......|+++
T Consensus 80 -~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~s 156 (342)
T KOG3178|consen 80 -GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGS 156 (342)
T ss_pred -ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHH
Confidence 12 7999999986554 344589998888878889999999999999987 4888899988899999888888899999
Q ss_pred hhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccC-CCeEEeecCCCCCCC
Q 018565 168 MACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKC-HGVEHVGGDMFDGVP 246 (354)
Q Consensus 168 m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~d~~~~~~ 246 (354)
|...+....+.+++.+. +++.....||+|||.|..+..++..||++.++.+|+|.+++.+... +.|+.+.+|+|++.|
T Consensus 157 m~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P 235 (342)
T KOG3178|consen 157 MSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTP 235 (342)
T ss_pred HHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCC
Confidence 99888887777887776 4778899999999999999999999999999999999999998875 779999999999999
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
..|+|++.++||||+|+++.++|+++++.|+| +|+|++.|.+.++...-+.........+|+.|+.++.+|+.|+.+|+
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~-~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~ 314 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPP-GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEF 314 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCC-CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHH
Confidence 99999999999999999999999999999999 99999999988852220111122346678899988788999999999
Q ss_pred HHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 327 DYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+.++.++||....+.-.+..+++|+++|
T Consensus 315 q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 315 QALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HhcchhhcCceeEEEeccCccchheeCC
Confidence 9999999999999999999999999986
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=297.90 Aligned_cols=289 Identities=16% Similarity=0.321 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCC
Q 018565 29 TNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHG 107 (354)
Q Consensus 29 ~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~ 107 (354)
....+|++|+++||||.|.+ +|.|++|||+++|++++.+++||++|+++|+|++.+ ++|++|+.++ ++.+++
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~-----~~y~~t~~~~~~l~~~~ 74 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-----GKWSLTEFADYMFSPTP 74 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecC-----CcEecchhHHhhccCCc
Confidence 35789999999999999987 799999999999999999999999999999999876 8999999997 554444
Q ss_pred Cc---chHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhh-hchhhhHHHHHhcC
Q 018565 108 EN---NMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMA-CDTRLAMRAIIEGC 183 (354)
Q Consensus 108 ~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~~~~~~ 183 (354)
+. ++.++..+.. ......|.+|+++++++. +|...++ +....++. ..|...|. .......+.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~~~--~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 145 (306)
T TIGR02716 75 KEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQK--NFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQLLLEEA 145 (306)
T ss_pred cchhhhcCchHHHHH-HHHHHHHHhHHHHhcCCc--ccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHHHHHHc
Confidence 32 1122333221 123457899999998542 3332221 11111122 22333443 33333455666767
Q ss_pred CCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEecc
Q 018565 184 PEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKW 255 (354)
Q Consensus 184 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~ 255 (354)
+ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|+++ ++|++|+|++++
T Consensus 146 ~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~ 223 (306)
T TIGR02716 146 K--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 223 (306)
T ss_pred C--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEh
Confidence 6 77889999999999999999999999999999999988887753 4789999999997 677899999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHh-hccc-CCcccCCHHHHHHHHHHc
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM-MAHT-NKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~g~~~t~~e~~~ll~~a 333 (354)
++|+|+++.+.++|++++++|+| ||+++|.|.+.++... .. + ....+..+ .... .-...++.++|.++|+++
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~p-gG~l~i~d~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRS-GGRLLILDMVIDDPEN-PN-F---DYLSHYILGAGMPFSVLGFKEQARYKEILESL 297 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCC-ch-h---hHHHHHHHHcccccccccCCCHHHHHHHHHHc
Confidence 99999999899999999999999 9999999988765433 21 1 11111111 0000 111234589999999999
Q ss_pred CCceeEEE
Q 018565 334 GFSRYNIT 341 (354)
Q Consensus 334 Gf~~~~~~ 341 (354)
||+.++++
T Consensus 298 Gf~~v~~~ 305 (306)
T TIGR02716 298 GYKDVTMV 305 (306)
T ss_pred CCCeeEec
Confidence 99988754
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=286.59 Aligned_cols=235 Identities=34% Similarity=0.644 Sum_probs=204.0
Q ss_pred CceEecCcccchhhcCCC-cchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhh
Q 018565 91 SMAFQQTPLSRRLMRHGE-NNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMA 169 (354)
Q Consensus 91 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 169 (354)
+++|+||+.|+.|..+++ .++..++.+...+..+..|.+|++++++++ ++|...+|.++|+++.++++....|+.+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 489999999986666554 578888887667889999999999999998 689999999999999999999999999999
Q ss_pred hchhhhH-HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCCCcc
Q 018565 170 CDTRLAM-RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEA 248 (354)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~ 248 (354)
..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.|||++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 9888777 77888888 78889999999999999999999999999999999999999988999999999999988889
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCC--ceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDK--GKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~g--G~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
|+|+++++||+|+++++.++|++++++|+| | |+|+|+|.+.++... .+........+|++|+.. .+|+.||.+||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~p-g~~g~llI~e~~~~~~~~-~~~~~~~~~~~dl~ml~~-~~G~~rt~~e~ 236 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKP-GKDGRLLIIEMVLPDDRT-GPPSAEMDALFDLNMLVL-TGGKERTEEEW 236 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEE-CTTEEEEEEEEEECSSSS-SHHHHHHHHHHHHHHHHH-HSSS-EEHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCC-CCCCeEEEEeeccCCCCC-CchHHHHHHHHHHHHHHh-cCCCCcCHHHH
Confidence 999999999999999999999999999999 8 999999999998876 532221225789999998 66999999999
Q ss_pred HHHHH
Q 018565 327 DYVLR 331 (354)
Q Consensus 327 ~~ll~ 331 (354)
++||+
T Consensus 237 ~~ll~ 241 (241)
T PF00891_consen 237 EALLK 241 (241)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=142.84 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=119.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCc--ceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPE--ADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~--~D~i~~~~~l 257 (354)
.++.+|||||||||.++..+++..+..+++++|+ +.|++.+++ ...++|+.+|+.+ |+|+ ||+|.++..|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 4689999999999999999999999999999999 999999886 1239999999999 9884 9999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH-hh---ccc-C-C-----------ccc
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV-MM---AHT-N-K-----------GKE 320 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~-~-~-----------g~~ 320 (354)
+++++. .++|++++|+||| ||++++.|...+.... .. .....+.+. .+ ... . + -..
T Consensus 130 rnv~d~--~~aL~E~~RVlKp-gG~~~vle~~~p~~~~-~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 130 RNVTDI--DKALKEMYRVLKP-GGRLLVLEFSKPDNPV-LR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred hcCCCH--HHHHHHHHHhhcC-CeEEEEEEcCCCCchh-hH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhC
Confidence 999865 4899999999999 9999999998876644 21 111111111 10 000 0 1 133
Q ss_pred CCHHHHHHHHHHcCCceeEEEEcCCc
Q 018565 321 RSLKEWDYVLRQAGFSRYNITSIHAV 346 (354)
Q Consensus 321 ~t~~e~~~ll~~aGf~~~~~~~~~~~ 346 (354)
.+.+++.++++++||+.+....+..+
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~~~~G 228 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYENLTFG 228 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEeeeee
Confidence 47899999999999999886666443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-19 Score=155.09 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=119.6
Q ss_pred CCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA--FPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~~ 256 (354)
.+..+|||||||+|..+..++++ +|+.+++++|+ +++++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 35679999999999999999987 47899999999 899988764 3478999999998 6778999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc-----------------ccCCcc
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA-----------------HTNKGK 319 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~g~ 319 (354)
+|++++++...++++++++|+| ||.+++.|.+.+++.. .. .....++... ....-.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~d~~~~~~~~-~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP-NGVLVLSEKFRFEDTK-IN-----HLLIDLHHQFKRANGYSELEISQKRTALENVMR 204 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC-CeEEEEeecccCCCHh-HH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC
Confidence 9999988888999999999999 9999999987655433 11 0111111100 001124
Q ss_pred cCCHHHHHHHHHHcCCceeEEEEcCCceeEEEE
Q 018565 320 ERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEA 352 (354)
Q Consensus 320 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~ 352 (354)
..|.+++.++++++||+.+++.........+.+
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~ 237 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVELWFQCFNFGSLVA 237 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhe
Confidence 568999999999999998765444343443333
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.1e-17 Score=143.78 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=118.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-CCC--cceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD-GVP--EADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~i~ 252 (354)
..+..+|||||||+|.++..+++++ |+.+++++|+ ++|++.+++ ..+++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998874 6779999999 899988753 2479999999988 765 399999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-H-hh-c-cc----------CCc
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-V-MM-A-HT----------NKG 318 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-~-~~-~-~~----------~~g 318 (354)
+..++|++++. .++|++++++||| ||+++++|...++... ..+. ....... . .. . .. .-.
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp-GG~l~i~d~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP-GSRVSILDFNKSTQPF-TTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc-CcEEEEEECCCCCcHH-HHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 99999998865 5889999999999 9999999987654322 1100 0000000 0 00 0 00 002
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEe
Q 018565 319 KERSLKEWDYVLRQAGFSRYNITSIHAV-QSLIEAF 353 (354)
Q Consensus 319 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~ 353 (354)
..++.+++.++++++||+.++...+.+. ..+..+.
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 3568999999999999999998887654 4455543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-17 Score=144.91 Aligned_cols=155 Identities=13% Similarity=0.228 Sum_probs=119.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~ 248 (354)
..++..+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .+++++..+|+.+ +++ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 45566666 7788999999999999999888765 679999999 888887764 4679999999987 665 49
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|++..+++|++.++...+|++++++||| ||++++.+........ . .. .... .... ......+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP-GG~lvi~d~~~~~~~~-~---~~--~~~~--~~~~-~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP-NGILLITDYCADKIEN-W---DE--EFKA--YIKK-RKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC-CcEEEEEEeccccccC-c---HH--HHHH--HHHh-cCCCCCCHHHHHH
Confidence 999999988888866778999999999999 9999999886654322 1 10 1100 1111 1123458999999
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
+|+++||+.++...+.
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999988764
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-18 Score=149.16 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=113.9
Q ss_pred CCCceEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTK--AFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~~ 256 (354)
.+..+|||||||+|..+..+++ .+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4668999999999999999888 468999999999 999988865 3489999999988 6777999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH-hhc------------ccCCcccCCH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV-MMA------------HTNKGKERSL 323 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~-~~~------------~~~~g~~~t~ 323 (354)
+|++++++..+++++++++||| ||.+++.|.+..+... ..+.. ...+.+.. ... ....-...|.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp-GG~l~l~e~~~~~~~~-~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP-GGALVLSEKFSFEDAK-VGELL-FNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC-CCEEEEEEecCCCcch-hHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999888888999999999999 9999999977655443 11100 00000000 000 0001123489
Q ss_pred HHHHHHHHHcCCceeEEE
Q 018565 324 KEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~ 341 (354)
++..++|+++||+.++++
T Consensus 212 ~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 212 ETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHcCchhHHHH
Confidence 999999999999876543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=150.39 Aligned_cols=157 Identities=20% Similarity=0.311 Sum_probs=81.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCc--ceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPE--ADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~--~D~i~~~~ 255 (354)
..++.+|||+|||+|..+..++++. |+.+++++|+ +.|++.+++ ..+|+++.+|..+ |+++ ||+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999874 6789999999 999999875 3589999999999 7764 99999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh--------cccCC----------
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM--------AHTNK---------- 317 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~---------- 317 (354)
.+|++++. .+.|++++|+||| ||+++|+|...|.... . ...+.+.+. ....+
T Consensus 125 glrn~~d~--~~~l~E~~RVLkP-GG~l~ile~~~p~~~~----~---~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~S 194 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKP-GGRLVILEFSKPRNPL----L---RALYKFYFKYILPLIGRLLSGDREAYRYLPES 194 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEE-EEEEEEEEEEB-SSHH----H---HHHHHH--------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCC-CeEEEEeeccCCCCch----h---hceeeeeecccccccccccccccccccccccc
Confidence 99999875 4789999999999 9999999998876432 1 111111110 00011
Q ss_pred -cccCCHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEe
Q 018565 318 -GKERSLKEWDYVLRQAGFSRYNITSIHAV-QSLIEAF 353 (354)
Q Consensus 318 -g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~ 353 (354)
....+.+++.++++++||+.++..++... ..+..+.
T Consensus 195 i~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 195 IRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp --------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccC
Confidence 12336899999999999999998887544 4444443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=139.06 Aligned_cols=167 Identities=19% Similarity=0.287 Sum_probs=122.3
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-- 246 (354)
.++..+. ..++.+|||+|||+|.++..+++.. |..+++++|+ +++++.+++ .+++++..+|+.+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 4444455 5677899999999999999999875 6789999999 888877664 3579999999987 554
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhh-hhccH----------------
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVR-LMLDM---------------- 309 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~-~~~~l---------------- 309 (354)
.||+|++..++|++++. .++|+++.++|+| ||.+++.+...+.... +.... ..+..
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~-gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP-GGKVVCLETSQPTIPG----FKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc-CeEEEEEECCCCCChH----HHHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 49999999999988765 4899999999999 9999998865433211 10000 00000
Q ss_pred HhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEeC
Q 018565 310 VMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH-AVQSLIEAFP 354 (354)
Q Consensus 310 ~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 354 (354)
..+.. .....++.+++.++|+++||+.+++.+.. +...++.++|
T Consensus 187 ~~~~~-~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQE-STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00000 11234578999999999999999999986 5666777775
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-16 Score=143.05 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=110.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
.++.+|||||||+|..+..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 679999999 888876653 3579999999988 655 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-ch-hhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KF-KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
+||+++. .+++++++++||| ||+++|.+........ .. .. ......++...... ......+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp-GG~lvi~~~~~~~~~~-~~~~l~~~~~~~~~~i~~~~-~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP-GGRIIIVTWCHRDLEP-GETSLKPDEQKLLDKICAAY-YLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC-CcEEEEEEeccccccc-ccccCCHHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHCC
Confidence 9998865 4899999999999 9999998875432211 10 00 00001111100011 1112347999999999999
Q ss_pred CceeEEEEcC
Q 018565 335 FSRYNITSIH 344 (354)
Q Consensus 335 f~~~~~~~~~ 344 (354)
|..+++..+.
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999987764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8e-16 Score=136.99 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=110.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-C-CCcceEEEe
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-G-VPEADAAII 253 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~-~~~~D~i~~ 253 (354)
..+++.+. ..++.+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45566666 56778999999999999999999999999999999 899998875 568999999876 2 235999999
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhh----hhccH-HhhcccCCcccCCHHHHHH
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVR----LMLDM-VMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~----~~~~l-~~~~~~~~g~~~t~~e~~~ 328 (354)
+.++|++++. .+++++++++||| ||++++....... .. ........ .+... .......+....+.+++.+
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~-~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP-GSWIAVQVPGNFD-AP-SHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC-CcEEEEEcCCCcC-Ch-hHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 9999998765 5889999999999 9999886422111 01 00000000 00000 0000101223458999999
Q ss_pred HHHHcCCceeE
Q 018565 329 VLRQAGFSRYN 339 (354)
Q Consensus 329 ll~~aGf~~~~ 339 (354)
+|+++||++..
T Consensus 171 ~l~~aGf~v~~ 181 (255)
T PRK14103 171 LLTDAGCKVDA 181 (255)
T ss_pred HHHhCCCeEEE
Confidence 99999998543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.5e-16 Score=140.50 Aligned_cols=141 Identities=22% Similarity=0.266 Sum_probs=111.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCC--cceEEEeccccccC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDW 260 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~ 260 (354)
.+..+|||||||+|..+..+++..+..+++++|. +++++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999888889999999 888888765 4578999999987 554 49999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
++.+ ++|++++++|+| ||++++.+...+.... .....+..+ ...+.+|+.++|+++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP-GG~LvIi~~~~p~~~~-------~r~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI-GGKACLIGPVHPTFWL-------SRFFADVWM-------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC-CcEEEEEEecCcchhH-------HHHhhhhhc-------cCCCHHHHHHHHHHCCCeEEEE
Confidence 8764 789999999999 9999988765432111 011111111 2357999999999999999998
Q ss_pred EEcCC
Q 018565 341 TSIHA 345 (354)
Q Consensus 341 ~~~~~ 345 (354)
..+..
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 87643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-15 Score=129.56 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=121.5
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~- 246 (354)
.++..+. ..+..+|||+|||+|.++..+++.+| +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+
T Consensus 42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3344444 34568999999999999999999987 789999999 777777654 2568999999987 433
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-----HhhcccCC---
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-----VMMAHTNK--- 317 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~--- 317 (354)
.||+|++.+++|++++. ..+|+++.++|+| ||.+++++...+.... .......+.. ..... .+
T Consensus 120 ~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~-gG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~ 191 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDI--DKALREMYRVLKP-GGRLVILEFSKPTNPP----LKKAYDFYLFKVLPLIGKLI-SKNAE 191 (239)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHhccC-CcEEEEEEecCCCchH----HHHHHHHHHHhhhHHHHHHH-cCCcH
Confidence 49999999999998764 5889999999999 9999999876654321 0000000000 00000 00
Q ss_pred ---------cccCCHHHHHHHHHHcCCceeEEEEcC-CceeEEEEeC
Q 018565 318 ---------GKERSLKEWDYVLRQAGFSRYNITSIH-AVQSLIEAFP 354 (354)
Q Consensus 318 ---------g~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 354 (354)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 134578999999999999999999874 5678888875
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=138.16 Aligned_cols=144 Identities=17% Similarity=0.177 Sum_probs=105.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-------cCCCeEEeecCCCC-CCC-cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-------KCHGVEHVGGDMFD-GVP-EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh 258 (354)
.+.+|||||||+|.++..+++..+. .++++|. +.++..++ ...++++..+|+.+ +.+ .||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998765 5999998 55554322 13579999999887 554 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
|..+. ..+|+++++.|+| ||.+++.+.+.+.... ....+ ...+.. +. ..-..+|.+++.++|+++||+.+
T Consensus 201 H~~dp--~~~L~~l~~~Lkp-GG~lvl~~~~i~~~~~-~~l~p-~~~y~~--~~---~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVP-GGELVLETLVIDGDEN-TVLVP-GDRYAK--MR---NVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred ccCCH--HHHHHHHHHhcCC-CcEEEEEEEEecCCCc-cccCc-hhHHhc--Cc---cceeCCCHHHHHHHHHHcCCceE
Confidence 97765 4789999999999 9999887766655433 11000 000000 00 11124689999999999999999
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
++...
T Consensus 271 ~~~~~ 275 (322)
T PRK15068 271 RIVDV 275 (322)
T ss_pred EEEeC
Confidence 98765
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-16 Score=136.91 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=113.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~ 247 (354)
.+.+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.++
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 356677777 8899999999999999999999998 789999999 666665543 57899999998873348
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc-HHhhcccCCcccCCHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD-MVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~~~t~~e~ 326 (354)
||.|++..++.|++.+....+++++.++||| ||++++.......... . .......+ +....+ ++|..++.+++
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp-gG~~~lq~i~~~~~~~-~---~~~~~~~~~i~kyiF-Pgg~lps~~~~ 201 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKP-GGRLVLQTITHRDPPY-H---AERRSSSDFIRKYIF-PGGYLPSLSEI 201 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSET-TEEEEEEEEEE--HHH-H---HCTTCCCHHHHHHTS-TTS---BHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCC-CcEEEEEecccccccc-h---hhcCCCceEEEEeeC-CCCCCCCHHHH
Confidence 9999999999999988889999999999999 9999987776654322 1 00000001 222334 78888999999
Q ss_pred HHHHHHcCCceeEEEEcC
Q 018565 327 DYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~ 344 (354)
...++++||++.++..++
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999999887764
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=125.56 Aligned_cols=158 Identities=11% Similarity=0.056 Sum_probs=125.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc----c--CCCe-EEeecCCCCC---CC--------cceEEE
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE----K--CHGV-EHVGGDMFDG---VP--------EADAAI 252 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~~v-~~~~~d~~~~---~~--------~~D~i~ 252 (354)
+|||||||||..+..+++.+|+++..--|. ++.....+ . .+++ ..+..|+.++ .+ .||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999999988887 33322221 1 1222 2234455542 22 489999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ 332 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~ 332 (354)
+.|++|..+.+.+..+++.+.++|+| ||.|++..++..+... ..+....||.+..........|+.+++.++.++
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~-gG~L~~YGPF~~~G~~----ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKP-GGLLFLYGPFNRDGKF----TSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCC-CCEEEEeCCcccCCEe----CCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 99999999999999999999999999 9999999987765433 223556778777766567889999999999999
Q ss_pred cCCceeEEEEcCCceeEEEEeC
Q 018565 333 AGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 333 aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+||+..+.+.+|.+..+++.+|
T Consensus 183 ~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 183 HGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CCCccCcccccCCCCeEEEEeC
Confidence 9999999999999988887775
|
The function of this family is unknown. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-15 Score=134.86 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=108.8
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-------cCCCeEEeecCCCC-CC-Cc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-------KCHGVEHVGGDMFD-GV-PE 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~-~~ 247 (354)
.++..+. ...+.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.+..+++.+ +. ..
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3444444 345689999999999999999887664 7899998 66655332 14678888888776 43 36
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++..++||+++. ..+|++++++||| ||.|++.+.+.+.... ..-.+ .... ..+. .....++.+++.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp-GG~Lvletl~i~g~~~-~~l~p-~~ry--~k~~---nv~flpS~~~L~ 258 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI-KGELVLETLVIDGDLN-TVLVP-KDRY--AKMK---NVYFIPSVSALK 258 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCC-CCEEEEEEEEecCccc-cccCc-hHHH--Hhcc---ccccCCCHHHHH
Confidence 9999999999998765 4789999999999 9999998877654332 10000 0000 0010 111345899999
Q ss_pred HHHHHcCCceeEEEEc
Q 018565 328 YVLRQAGFSRYNITSI 343 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~ 343 (354)
.+|+++||+.+++...
T Consensus 259 ~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 259 NWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHCCCeEEEEEec
Confidence 9999999999988764
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-15 Score=128.90 Aligned_cols=161 Identities=18% Similarity=0.177 Sum_probs=118.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
..++.+|||+|||+|..+..+++.+|. .+++++|+ +.++..+++ ..++++..+|+.+ +.+ .||+|+++..+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999999886 78999999 777776654 3578999999987 443 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc-----c--cCC---------cccC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA-----H--TNK---------GKER 321 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~-----~--~~~---------g~~~ 321 (354)
|+.++ ...+++++++.|+| ||++++.+...+.... +......+...++. . ..+ ....
T Consensus 117 ~~~~~--~~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 117 RNVTD--IQKALREMYRVLKP-GGRLVILEFSKPANAL----LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred CCccc--HHHHHHHHHHHcCC-CcEEEEEEecCCCchh----hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 98765 45899999999999 9999998876543321 10000000000000 0 000 1234
Q ss_pred CHHHHHHHHHHcCCceeEEEEcCCc-eeEEEEeC
Q 018565 322 SLKEWDYVLRQAGFSRYNITSIHAV-QSLIEAFP 354 (354)
Q Consensus 322 t~~e~~~ll~~aGf~~~~~~~~~~~-~~~i~~~~ 354 (354)
+.++|..+|+++||+.+++.++.+. .++++++|
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 7899999999999999999998664 77888875
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=132.08 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=128.3
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~ 247 (354)
.+.+++.+. +.++.+|||||||.|.++..+++++ +.+++++++ +++...+++ ..++++...|..+..+.
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 356677777 8999999999999999999999998 899999999 777776654 46899999998885555
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||-|+...+++|+..+....+++++++.|+| ||++++.....+.... . ....+ +.-... ++|..++.+++.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~-~G~~llh~I~~~~~~~-~----~~~~~--i~~yiF-PgG~lPs~~~i~ 208 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP-GGRMLLHSITGPDQEF-R----RFPDF--IDKYIF-PGGELPSISEIL 208 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC-CceEEEEEecCCCccc-c----cchHH--HHHhCC-CCCcCCCHHHHH
Confidence 9999999999999999899999999999999 9999998877665332 1 01111 112233 889999999999
Q ss_pred HHHHHcCCceeEEEEcC
Q 018565 328 YVLRQAGFSRYNITSIH 344 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~~ 344 (354)
...+++||.+.++..++
T Consensus 209 ~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 209 ELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHhcCcEEehHhhhc
Confidence 99999999998876653
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-15 Score=144.55 Aligned_cols=151 Identities=14% Similarity=0.193 Sum_probs=117.0
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--c
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--E 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~ 247 (354)
..+++.+. ..+..+|||||||+|..+..+++.+ +.+++++|+ +.++..+++ ..++++..+|+.+ +++ .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 44566665 5667899999999999999988876 779999999 888887754 4579999999988 554 3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++..+++|+++. .++|++++++||| ||++++.+........ .. ... .. ... .+...++.+++.
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~-~~---~~~---~~--~~~-~g~~~~~~~~~~ 399 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP-GGKVLISDYCRSPGTP-SP---EFA---EY--IKQ-RGYDLHDVQAYG 399 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC-CeEEEEEEeccCCCCC-cH---HHH---HH--HHh-cCCCCCCHHHHH
Confidence 9999999999998865 4899999999999 9999999887654322 11 111 11 111 334567899999
Q ss_pred HHHHHcCCceeEEEEc
Q 018565 328 YVLRQAGFSRYNITSI 343 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~ 343 (354)
++++++||+++++...
T Consensus 400 ~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 400 QMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHCCCeeeeeecc
Confidence 9999999999977654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-16 Score=119.08 Aligned_cols=98 Identities=24% Similarity=0.391 Sum_probs=84.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCC-CC-C-CCcceEEEecc-c
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDM-FD-G-VPEADAAIIKW-V 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~-~~-~-~~~~D~i~~~~-~ 256 (354)
++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|+ .. + .++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 367999999999999999999999999999999 889887764 68999999999 33 3 34699999999 6
Q ss_pred cccCC-hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWG-DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~-~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+|++. .++..++++++++.|+| ||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p-gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP-GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 66443 35788999999999999 99999865
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=130.53 Aligned_cols=136 Identities=15% Similarity=0.224 Sum_probs=107.7
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEeccccccC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDW 260 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~ 260 (354)
.+|||||||+|..+..+++.+|+.+++++|+ ++++..+++ .+++++...|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777776654 4678999999976 444 49999999999998
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
++. ..+|++++++|+| ||++++.+...+.... . . . + . ......+.++|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~---~-~----~-----~-~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD-GGHLVLADFIANLLSA-I---E-H----E-----E-TTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC-CCEEEEEEcccccCcc-c---c-c----c-----c-cccccCCHHHHHHHHHHCCCeEEEe
Confidence 764 5899999999999 9999998875432111 0 0 0 0 0 1112457899999999999999998
Q ss_pred EEcC
Q 018565 341 TSIH 344 (354)
Q Consensus 341 ~~~~ 344 (354)
..+.
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7763
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-15 Score=125.94 Aligned_cols=140 Identities=15% Similarity=0.112 Sum_probs=106.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-c
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-E 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~ 247 (354)
+.+++.++ ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 44555555 445689999999999999999986 568999999 888887664 2458888899877 444 4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++..++|+++++....++++++++|+| ||.+++++....++.. .+ . +....++.+|+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~~~~~~~~~~~~~~-~~------~----------~~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP-GGYNLIVAAMDTADYP-CT------V----------GFPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC-CcEEEEEEEecCCCCC-CC------C----------CCCCccCHHHHH
Confidence 9999999999998888889999999999999 9998877654433221 00 0 011235788898
Q ss_pred HHHHHcCCceeEE
Q 018565 328 YVLRQAGFSRYNI 340 (354)
Q Consensus 328 ~ll~~aGf~~~~~ 340 (354)
++++ ||++++.
T Consensus 158 ~~~~--~~~~~~~ 168 (197)
T PRK11207 158 RYYE--GWEMVKY 168 (197)
T ss_pred HHhC--CCeEEEe
Confidence 8887 8988775
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-15 Score=131.54 Aligned_cols=145 Identities=20% Similarity=0.253 Sum_probs=111.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~ 255 (354)
..++.+|||||||+|..+..+++. .+..+++++|+ +.+++.+++ .+++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 557789999999999988877765 46678999999 888888775 3589999999987 654 499999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
++|++++. .+++++++++||| ||++++.+........ .....+..++.. ..+...+.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp-GG~l~i~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP-GGRFAISDVVLRGELP-------EEIRNDAELYAG-CVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC-CcEEEEEEeeccCCCC-------HHHHHhHHHHhc-cccCCCCHHHHHHHHHHCCC
Confidence 99987764 4789999999999 9999999887544222 111122222222 23456689999999999999
Q ss_pred ceeEEEE
Q 018565 336 SRYNITS 342 (354)
Q Consensus 336 ~~~~~~~ 342 (354)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9987744
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-14 Score=120.89 Aligned_cols=144 Identities=20% Similarity=0.302 Sum_probs=110.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-CCCc--c
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR------IRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD-GVPE--A 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~--~ 248 (354)
....++||++||||..+..+++.-+. .++++.|+ |+++..+++ ..++.++.+|..+ |+|. |
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 35589999999999999999998766 78999999 999987754 4569999999999 8885 9
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhh--hhhccH---------------Hh
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSV--RLMLDM---------------VM 311 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~--~~~~~l---------------~~ 311 (354)
|.|++..-+.+|++.+ +.|++++|+||| ||++.+.|+-.-++.. ..+. ..+++. ..
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp-GGrf~cLeFskv~~~~----l~~fy~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP-GGRFSCLEFSKVENEP----LKWFYDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC-CcEEEEEEccccccHH----HHHHHHhhhhhhhchhhHhhhhhHhhhhh
Confidence 9999999999998764 899999999999 9999999975444211 1111 111111 00
Q ss_pred hcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 312 MAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 312 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
+.. .-.+..+.+++..+.+++||+.+.
T Consensus 252 Lve-SI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVE-SIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHh-hhhcCCCHHHHHHHHHHcCCcccc
Confidence 111 112445789999999999999986
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=136.10 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=105.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
++.+|||||||+|.++..+++ ++.+++++|. +++++.++. ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 457999999999999998876 4679999999 888888764 2479999999876 433 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc-HHhhcc--c-CCcccCCHHHHHHHHHHc
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD-MVMMAH--T-NKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-l~~~~~--~-~~g~~~t~~e~~~ll~~a 333 (354)
||+++.. .+|++++++||| ||.+++.+....... +........ +..+.. + ...+.++.+|+..+++++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP-GG~liist~nr~~~~-----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP-NGATVLSTINRTMRA-----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC-CcEEEEEECCcCHHH-----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 9998764 899999999999 999998865322100 000000000 000111 0 112467999999999999
Q ss_pred CCceeEEEEc
Q 018565 334 GFSRYNITSI 343 (354)
Q Consensus 334 Gf~~~~~~~~ 343 (354)
||+++++.-+
T Consensus 281 Gf~i~~~~G~ 290 (322)
T PLN02396 281 SVDVKEMAGF 290 (322)
T ss_pred CCeEEEEeee
Confidence 9999988443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=124.12 Aligned_cols=136 Identities=22% Similarity=0.167 Sum_probs=95.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC---CCCcceEEEeccccccCChH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD---GVPEADAAIIKWVLHDWGDD 263 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~~D~i~~~~~lh~~~~~ 263 (354)
.+..+|||||||+|.++..+.+.. .+++++|+ +.+++. ..+.....+... +...||+|+++.++|++++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d- 93 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD- 93 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc-
Confidence 467899999999999999996653 39999999 777766 222233222222 2345999999999999996
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
...+|+++++.||| ||.+++.++....... . ............ .....++.++|..+++++||++++
T Consensus 94 -~~~~l~~l~~~Lkp-gG~l~~~~~~~~~~~~-~-----~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 -PEEFLKELSRLLKP-GGYLVISDPNRDDPSP-R-----SFLKWRYDRPYG-GHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -HHHHHHHHHHCEEE-EEEEEEEEEBTTSHHH-H-----HHHHCCGTCHHT-TTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -HHHHHHHHHHhcCC-CCEEEEEEcCCcchhh-h-----HHHhcCCcCccC-ceeccCCHHHHHHHHHHCCCEEEE
Confidence 56999999999999 9999998876532111 0 000011111000 234677999999999999999886
|
... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=140.71 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=109.8
Q ss_pred CChhHHHhhChHHHHHHHHHhhhchhhh--HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH
Q 018565 148 KDVWSYAAADAAHSKLINDAMACDTRLA--MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHV 224 (354)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 224 (354)
..+|+++...++...+|.+.|....... .......++ +.++.+|||||||+|..+..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 3678888888877777776665432211 111122333 44678999999999999999999999999999999 888
Q ss_pred hhhccc-----CCCeEEeecCCCC-C--CC--cceEEEeccccccC-----------ChHHHHHHHHHHHHhcCCCCceE
Q 018565 225 VCVAEK-----CHGVEHVGGDMFD-G--VP--EADAAIIKWVLHDW-----------GDDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 225 ~~~a~~-----~~~v~~~~~d~~~-~--~~--~~D~i~~~~~lh~~-----------~~~~~~~~L~~~~~~L~p~gG~l 283 (354)
++.+++ ..+++++.+|..+ + ++ +||+|+++.++|+| +++...++|++++++||| ||++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP-GGrL 533 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP-GGRI 533 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC-CcEE
Confidence 887764 3567888899876 3 33 49999999999976 345778999999999999 9999
Q ss_pred EEEeeeeCCC
Q 018565 284 IIVEAIIEED 293 (354)
Q Consensus 284 li~e~~~~~~ 293 (354)
++.|.+.++.
T Consensus 534 II~D~v~~E~ 543 (677)
T PRK06922 534 IIRDGIMTED 543 (677)
T ss_pred EEEeCccCCc
Confidence 9999766543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-14 Score=123.90 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=111.0
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cc
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EA 248 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~ 248 (354)
+++.+. ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++..+|+.+ +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344444 6677899999999999999999987 7889999999 777776654 4679999999877 543 49
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcch-hhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKF-KSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
|+|++.++++++++. ..++++++++|+| ||.+++.+........ .... ......... +.. ......+..+|.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP-GGRVVVLDTDWDTLVW-HSGDRALMRKILNF--WSD-HFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC-CcEEEEEecCCCceee-cCCChHHHHHHHHH--HHh-cCCCCcHHHHHH
Confidence 999999999998765 4789999999999 9999998854322111 0000 001111111 111 122344567899
Q ss_pred HHHHHcCCceeEEEEc
Q 018565 328 YVLRQAGFSRYNITSI 343 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~ 343 (354)
++++++||+.+++...
T Consensus 162 ~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 162 GLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHcCCCceeEEEE
Confidence 9999999998766443
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=128.45 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=105.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--CCC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--GVP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~~~--~~D~i~~~~~ 256 (354)
...+|||+|||+|.++..+++. +.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 4579999999999999999986 578999999 899988765 3578999998865 232 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc----chhhhhhhccH-HhhcccCCcccCCHHHHHHHHH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN----KFKSVRLMLDM-VMMAHTNKGKERSLKEWDYVLR 331 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~g~~~t~~e~~~ll~ 331 (354)
+|+++++. .+|+++.++||| ||.+++.......... .. .+......+.. ..... ......+.+++.++++
T Consensus 122 l~~~~~~~--~~l~~~~~~Lkp-gG~l~i~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~l~~~l~ 196 (255)
T PRK11036 122 LEWVADPK--SVLQTLWSVLRP-GGALSLMFYNANGLLM-HNMVAGNFDYVQAGMPKRKKRTL-SPDYPLDPEQVYQWLE 196 (255)
T ss_pred HHhhCCHH--HHHHHHHHHcCC-CeEEEEEEECccHHHH-HHHHccChHHHHhcCccccccCC-CCCCCCCHHHHHHHHH
Confidence 99987654 889999999999 9999886543211000 00 00000000000 00000 1123457899999999
Q ss_pred HcCCceeEEEEcCCce
Q 018565 332 QAGFSRYNITSIHAVQ 347 (354)
Q Consensus 332 ~aGf~~~~~~~~~~~~ 347 (354)
++||+++++.-+..+.
T Consensus 197 ~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 197 EAGWQIMGKTGVRVFH 212 (255)
T ss_pred HCCCeEeeeeeEEEEe
Confidence 9999998776554443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-14 Score=119.52 Aligned_cols=140 Identities=14% Similarity=0.048 Sum_probs=103.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EAD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D 249 (354)
.+.+.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-.+.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4444444 445689999999999999999985 578999999 888876653 2246777778765 433 599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHH
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYV 329 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~l 329 (354)
+|+++.++|+++.+....++++++++|+| ||.+++++....+... .. . ......+.+|+.++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lli~~~~~~~~~~-~~---------------~-~~~~~~~~~el~~~ 158 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRP-GGYNLIVAAMDTADYP-CH---------------M-PFSFTFKEDELRQY 158 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCC-CcEEEEEEecccCCCC-CC---------------C-CcCccCCHHHHHHH
Confidence 99999999999888888999999999999 9998887754332211 00 0 11124578999988
Q ss_pred HHHcCCceeEEE
Q 018565 330 LRQAGFSRYNIT 341 (354)
Q Consensus 330 l~~aGf~~~~~~ 341 (354)
|+ +|+++...
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 86 58877765
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=122.86 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=117.5
Q ss_pred hhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc
Q 018565 150 VWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA 228 (354)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a 228 (354)
.|+.+..+++....+...|..........++..+.....+..+|||+|||+|.++..+++. +.+++++|+ ++++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 3444444434344444444322222333333333311235789999999999999999875 458999999 8898887
Q ss_pred cc-------CCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchh
Q 018565 229 EK-------CHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFK 301 (354)
Q Consensus 229 ~~-------~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~ 301 (354)
++ ..++++..+|+.+..+.||+|++..++++++.+....+++++.+.+++ ++.+.+. +.... ..
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~-~~~i~~~----~~~~~----~~ 164 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE-RVIFTFA----PKTAW----LA 164 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC-CEEEEEC----CCchH----HH
Confidence 64 248999999988743679999999999999887788999999998887 5433321 11111 00
Q ss_pred hhhhhccHHhhcc--cCCcccCCHHHHHHHHHHcCCceeEEEEcCC
Q 018565 302 SVRLMLDMVMMAH--TNKGKERSLKEWDYVLRQAGFSRYNITSIHA 345 (354)
Q Consensus 302 ~~~~~~~l~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 345 (354)
....+.-..... ...-..++.+++.++++++||+++.......
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 165 -FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred -HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 000000000000 0112345899999999999999998876643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=123.16 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=90.3
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-C-CCcceEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-G-VPEADAA 251 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~-~~~~D~i 251 (354)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++..+|+.+ . .++||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 345666666 66778999999999999999999999999999999 889988876 5678999999876 2 2359999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+++.++|++++. .+++++++++||| ||.+++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp-gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAP-GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCC-CcEEEEE
Confidence 999999988764 4899999999999 9998885
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=106.91 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=76.3
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCCc--ceEEEeccccccCChHHHH
Q 018565 194 VDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVPE--ADAAIIKWVLHDWGDDECI 266 (354)
Q Consensus 194 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~~--~D~i~~~~~lh~~~~~~~~ 266 (354)
||+|||+|..+..++++ +..+++++|. +++++.+++ ..++++..+|+.+ ++++ ||+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999998 8899999999 888888776 5667799999988 7663 9999999999998 4556
Q ss_pred HHHHHHHHhcCCCCceEEE
Q 018565 267 KILKNCKEAITKDKGKVII 285 (354)
Q Consensus 267 ~~L~~~~~~L~p~gG~lli 285 (354)
+++++++++||| ||+++|
T Consensus 78 ~~l~e~~rvLk~-gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP-GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE-EEEEEE
T ss_pred HHHHHHHHHcCc-CeEEeC
Confidence 999999999999 999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-14 Score=114.53 Aligned_cols=137 Identities=26% Similarity=0.426 Sum_probs=100.7
Q ss_pred CCceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--C-CcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLT-KAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--V-PEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~-~~~D~i~~~~~ 256 (354)
...+|||+|||+|.++..++ +.+|+.+++++|+ +++++.++. .++++|..+|+.+ + + ..||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 56899999999999999999 5688999999999 999998875 4589999999999 5 4 36999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhh-hccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRL-MLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
+|++++.. .+++++.+.|++ +|.+++.+........ . ....... ......+. ..+. +.++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~-~G~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP-GGILIISDPNHNDELP-E-QLEELMNLYSEVWSMI--YIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE-EEEEEEEEEEHSHHHH-H-HHHHHHHHHHHHHHHC--C-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC-CcEEEEEECChHHHHH-H-HHHHHHHHHHHHhhhh--hccc--CHHHHHHHHHhcC
Confidence 99988764 889999999999 9999998877221110 0 0110111 01111111 1112 7889999999998
|
... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-13 Score=117.71 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=102.7
Q ss_pred CCCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CC--CcceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA----FPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GV--PEADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~--~~~D~i~~~~~ 256 (354)
.+..+|||||||+|.++..+++. .|+.+++++|+ +++++.+++ ..++++...+... +. ..||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46689999999999998888753 46679999999 999988875 2456666654433 22 35999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh---cccCC-----cccCCHHHHHH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM---AHTNK-----GKERSLKEWDY 328 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-----g~~~t~~e~~~ 328 (354)
+||+++++..++|++++++++ |.+++.+...+.... . .......... ..... -+.++.+|+.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~---~~~~i~dl~~~~~~~-----~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR---RLVLHNDLIRSRLAY-----A-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC---eeEEEeccccCHHHH-----H-HHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 999998888899999999986 356666655432110 0 0000000000 00011 24679999999
Q ss_pred HHHHcCCceeEEEEcCC
Q 018565 329 VLRQAGFSRYNITSIHA 345 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~~ 345 (354)
++++ ||++...++...
T Consensus 210 ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 210 LAPQ-GWRVERQWPFRY 225 (232)
T ss_pred HhhC-CCeEEeccceee
Confidence 9999 999988877653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=112.60 Aligned_cols=164 Identities=15% Similarity=0.190 Sum_probs=121.5
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC--CCCcceEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD--GVPEADAA 251 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~--~~~~~D~i 251 (354)
+..++..++ .....+|+|+|||+|..+..|++++|..+++++|. ++|++.|+. ..+++|..+|+.+ |-++.|++
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 356677777 77889999999999999999999999999999999 999999876 7899999999988 44469999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH--------Hhhc--ccCCcccC
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM--------VMMA--HTNKGKER 321 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l--------~~~~--~~~~g~~~ 321 (354)
+.+.+||-+++. .++|.++...|.| ||.|.+.= |++.. .+ . +..+.+. .+.. . ......
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~P-gg~LAVQm---PdN~d-ep-s--H~~mr~~A~~~p~~~~l~~~~~-~r~~v~ 165 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLAP-GGVLAVQM---PDNLD-EP-S--HRLMRETADEAPFAQELGGRGL-TRAPLP 165 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhCC-CceEEEEC---CCccC-ch-h--HHHHHHHHhcCchhhhhCcccc-ccCCCC
Confidence 999999987765 4899999999999 99888743 33322 21 1 1111111 1111 1 123445
Q ss_pred CHHHHHHHHHHcCCceeEEEEc------CCceeEEEEe
Q 018565 322 SLKEWDYVLRQAGFSRYNITSI------HAVQSLIEAF 353 (354)
Q Consensus 322 t~~e~~~ll~~aGf~~~~~~~~------~~~~~~i~~~ 353 (354)
+...+-++|...+-+ +++|+. ++...||+..
T Consensus 166 s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 166 SPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred CHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhe
Confidence 899999999988744 455543 4556666654
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=119.03 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=101.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~D~i~~~~~lh~ 259 (354)
.+..+|||||||+|.++..+++.. .+++++|+ +.++..+++ .+++++..+|+....+.||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456899999999999999998874 46999999 888887765 24799999995444456999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHh-hcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM-MAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
++++....+++++.+.+++ |.++... +.... ............ ...+......+.++|.++++++||++.
T Consensus 140 ~~~~~~~~~l~~l~~~~~~--~~~i~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 210 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG--SLIFTFA---PYTPL----LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVV 210 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC--eEEEEEC---CccHH----HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceE
Confidence 9998889999999987654 3333321 11100 000000000000 000022345578999999999999999
Q ss_pred EEEEcCC
Q 018565 339 NITSIHA 345 (354)
Q Consensus 339 ~~~~~~~ 345 (354)
++.++..
T Consensus 211 ~~~~~~~ 217 (230)
T PRK07580 211 RTERISS 217 (230)
T ss_pred eeeeccc
Confidence 9988754
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=125.54 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=115.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCCCCCcceEEE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFDGVPEADAAI 252 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~~~~~~D~i~ 252 (354)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++...|+.+..+.||+|+
T Consensus 157 ~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 34455555 6678899999999999999998875 679999999 888888765 3357888888765334699999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ 332 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~ 332 (354)
+..++++.++.....++++++++||| ||.+++.+...+.... . ...+.+. ... ++|...+.+++...++
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lkp-GG~lvl~~i~~~~~~~-~-----~~~~i~~--yif-p~g~lps~~~i~~~~~- 302 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKP-DGLFLLHTIGSNKTDT-N-----VDPWINK--YIF-PNGCLPSVRQIAQASE- 302 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCC-CcEEEEEEccCCCCCC-C-----CCCCcee--eec-CCCcCCCHHHHHHHHH-
Confidence 99999998887778999999999999 9999998765443221 1 0111111 223 5677788999888766
Q ss_pred cCCceeEEEEcC
Q 018565 333 AGFSRYNITSIH 344 (354)
Q Consensus 333 aGf~~~~~~~~~ 344 (354)
.||.+.++..++
T Consensus 303 ~~~~v~d~~~~~ 314 (383)
T PRK11705 303 GLFVMEDWHNFG 314 (383)
T ss_pred CCcEEEEEecCh
Confidence 589988876654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-13 Score=117.63 Aligned_cols=147 Identities=13% Similarity=0.102 Sum_probs=104.3
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADA 250 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~ 250 (354)
...+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.++. ...+.++.+|+.+ +++ .||+
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 345555555 345689999999999998888764 578999999 899988875 3446788899987 554 4999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHH
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVL 330 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll 330 (354)
|+++.++|..++. ..+|++++++|+| ||.+++.......... . ...+..+. ... ......+.+++..++
T Consensus 107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~-gG~l~~~~~~~~~~~e----l--~~~~~~~~-~~~-~~~~~~~~~~l~~~l 175 (251)
T PRK10258 107 AWSNLAVQWCGNL--STALRELYRVVRP-GGVVAFTTLVQGSLPE----L--HQAWQAVD-ERP-HANRFLPPDAIEQAL 175 (251)
T ss_pred EEECchhhhcCCH--HHHHHHHHHHcCC-CeEEEEEeCCCCchHH----H--HHHHHHhc-cCC-ccccCCCHHHHHHHH
Confidence 9999999875553 5899999999999 9999987654322111 1 00110000 001 223456899999999
Q ss_pred HHcCCce
Q 018565 331 RQAGFSR 337 (354)
Q Consensus 331 ~~aGf~~ 337 (354)
+..|+..
T Consensus 176 ~~~~~~~ 182 (251)
T PRK10258 176 NGWRYQH 182 (251)
T ss_pred HhCCcee
Confidence 9888764
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.1e-15 Score=110.69 Aligned_cols=87 Identities=26% Similarity=0.379 Sum_probs=58.8
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CC---CeEEeecCCCCC-CC-cceEEEeccccccCC
Q 018565 194 VDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CH---GVEHVGGDMFDG-VP-EADAAIIKWVLHDWG 261 (354)
Q Consensus 194 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---~v~~~~~d~~~~-~~-~~D~i~~~~~lh~~~ 261 (354)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|..+. .+ .||+|++.+++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 899977765 12 344444555542 33 699999999999994
Q ss_pred hHHHHHHHHHHHHhcCCCCceE
Q 018565 262 DDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~l 283 (354)
+...+++++++.|+| ||.|
T Consensus 81 --~~~~~l~~~~~~L~p-gG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKP-GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS-S-EE
T ss_pred --hHHHHHHHHHHHcCC-CCCC
Confidence 456999999999999 9975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=119.80 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCCceEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHhhhcccC--------------------------
Q 018565 188 DGIETLVDIGGNDGT----TLRTLTKAFP-----RIRGINFDL-PHVVCVAEKC-------------------------- 231 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 231 (354)
.+..+|+|+|||+|. ++..+.+.++ +.+++++|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4555666554 578999999 8999887751
Q ss_pred -------CCeEEeecCCCC-CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 232 -------HGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 232 -------~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+|+|..+|+.+ +.+ +||+|+|.+++|+++++...+++++++++|+| ||.|++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p-GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP-GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC-CeEEEEEC
Confidence 378999999998 332 49999999999999988889999999999999 99999853
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-14 Score=119.70 Aligned_cols=142 Identities=16% Similarity=0.129 Sum_probs=105.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CC----CeEEeecCCCCCCCcceEEEeccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CH----GVEHVGGDMFDGVPEADAAIIKWV 256 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----~v~~~~~d~~~~~~~~D~i~~~~~ 256 (354)
+.+|||||||.|.++..|++. +.+++++|. +.+++.|++ .. |+++...|.....+.||+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999998 578999999 889988875 22 477777777776666999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC----cccCCHHHHHHHHHH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK----GKERSLKEWDYVLRQ 332 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----g~~~t~~e~~~ll~~ 332 (354)
++|..+. ..+++.+.+.||| +|+++|.+....-... .. .....+........| .+..++++...++..
T Consensus 168 leHV~dp--~~~l~~l~~~lkP-~G~lfittinrt~lS~-~~----~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP-NGRLFITTINRTILSF-AG----TIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC-CCceEeeehhhhHHHh-hc----cccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 9997655 4899999999999 9999998865543222 10 111111111111012 245689999999999
Q ss_pred cCCceeEEE
Q 018565 333 AGFSRYNIT 341 (354)
Q Consensus 333 aGf~~~~~~ 341 (354)
+|+++..+.
T Consensus 240 ~~~~v~~v~ 248 (282)
T KOG1270|consen 240 NGAQVNDVV 248 (282)
T ss_pred cCcchhhhh
Confidence 999887764
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.7e-13 Score=117.38 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=103.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-CCC--cceEEEeccccccCCh
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGD 262 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~ 262 (354)
...+|||+|||+|.++..+++.+|..+++++|+ +.++..++. .++++++.+|+.+ +++ .||+|++..++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 347899999999999999999999999999999 777776664 3578999999987 543 4999999999998765
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEE
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 341 (354)
. .++|++++++|+| ||.+++.++....... . .... .. ......+.++|.++++++ |+...+.
T Consensus 114 ~--~~~l~~~~~~L~~-~G~l~~~~~~~~~~~~-------~---~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLKP-GGLLAFSTFGPGTLHE-------L---RQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcCC-CcEEEEEeCCccCHHH-------H---HHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 5899999999999 9999987643221100 0 0110 00 223456789999999998 8776553
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.9e-13 Score=119.01 Aligned_cols=131 Identities=16% Similarity=0.062 Sum_probs=100.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEeccccccC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDW 260 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~ 260 (354)
...+|||+|||+|..+..+++. +.+++++|. +.+++.+++ ..++++...|+.+ +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999885 579999999 788776653 3468888888876 344 49999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
+++....+++++.++|+| ||.+++++....+... .+ . .....++.+|+.++++. |++++.
T Consensus 198 ~~~~~~~~l~~~~~~Lkp-gG~~l~v~~~~~~~~~-~~---------------~-p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP-GGYNLIVCAMDTEDYP-CP---------------M-PFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCC-CcEEEEEEecccccCC-CC---------------C-CCCcccCHHHHHHHhCC--CEEEEE
Confidence 888889999999999999 9998887654332221 10 0 11234578999999965 888876
Q ss_pred E
Q 018565 341 T 341 (354)
Q Consensus 341 ~ 341 (354)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=117.49 Aligned_cols=143 Identities=15% Similarity=0.107 Sum_probs=105.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CC--CcceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GV--PEADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~--~~~D~i~~~~~lh~ 259 (354)
...+|||||||.|.++..+++. +.+++++|+ ++.++.|+. .-.+++...+..+ .. ..||+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5789999999999999999998 589999999 888888874 2335576666665 22 46999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc---HHhhcc--c-CCcccCCHHHHHHHHHHc
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD---MVMMAH--T-NKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---l~~~~~--~-~~g~~~t~~e~~~ll~~a 333 (354)
.++++ .+++++.+.+|| ||.++++...+..... ...... +..+.. | .-.+...++|+..++.++
T Consensus 137 v~dp~--~~~~~c~~lvkP-~G~lf~STinrt~ka~-------~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP-GGILFLSTINRTLKAY-------LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred cCCHH--HHHHHHHHHcCC-CcEEEEeccccCHHHH-------HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 99886 699999999999 9999988765432211 111111 111111 0 112455789999999999
Q ss_pred CCceeEEEEc
Q 018565 334 GFSRYNITSI 343 (354)
Q Consensus 334 Gf~~~~~~~~ 343 (354)
|+.+.....+
T Consensus 207 ~~~~~~~~g~ 216 (243)
T COG2227 207 NLKIIDRKGL 216 (243)
T ss_pred CceEEeecce
Confidence 9998887554
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=113.08 Aligned_cols=154 Identities=11% Similarity=0.098 Sum_probs=104.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~ 264 (354)
+..+|||||||+|..+..+++.+ +.+++++|+ ++|++.++.. ..++.+|+.+ |++ .||+|++..++|++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46799999999999999999887 579999999 9999998753 3467788887 665 39999999999998765
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc--HHhh--cccCC-----------cccCCHHHHHHH
Q 018565 265 CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD--MVMM--AHTNK-----------GKERSLKEWDYV 329 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--l~~~--~~~~~-----------g~~~t~~e~~~l 329 (354)
.+++++++++||| . +.++|...++... .... ...++. +..+ ..+.+ ....+.+++.++
T Consensus 127 -~~~l~e~~RvLkp-~--~~ile~~~p~~~~-~~~~--~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~ 199 (226)
T PRK05785 127 -EKVIAEFTRVSRK-Q--VGFIAMGKPDNVI-KRKY--LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREI 199 (226)
T ss_pred -HHHHHHHHHHhcC-c--eEEEEeCCCCcHH-HHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 4899999999998 4 4455654443221 0000 000000 0000 01011 123478999999
Q ss_pred HHHcCCceeEEEEcCCc-eeEEEEeC
Q 018565 330 LRQAGFSRYNITSIHAV-QSLIEAFP 354 (354)
Q Consensus 330 l~~aGf~~~~~~~~~~~-~~~i~~~~ 354 (354)
++++| ..++..++... ..+..++|
T Consensus 200 ~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 200 FEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHh-CceEEEEccccEEEEEEEee
Confidence 99984 66777777544 44555543
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=117.33 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=80.0
Q ss_pred CCceEEEecCCccHHHH-HH-HHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCCCC---CcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLR-TL-TKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDGV---PEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~-~l-~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~~---~~~D~i~~~ 254 (354)
++.+|+|||||.|.++. .+ .+.+|+.+++++|. +++++.|++ .++++|..+|..+.. .+||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 67999999999884433 33 35689999999999 888887764 468999999998732 469999999
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
++|+|+.+...++|+++++.|+| ||.+++-
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkP-GG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAP-GALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCC-CcEEEEe
Confidence 99999877778999999999999 9988873
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-13 Score=128.12 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=110.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC---CCC--
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD---GVP-- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~---~~~-- 246 (354)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +++++.++. .++++++.+|+.+ +++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 44455555 4456799999999999999999874 47899999 888876653 4679999999864 344
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
+||+|++..++|+++++...+++++++++||| ||.+++.|........ . . . . . .....++..+|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~-gG~l~~~d~~~~~~~~-~-----~-~------~-~-~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV-GGYIFFRESCFHQSGD-S-----K-R------K-N-NPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC-CeEEEEEeccCCCCCc-c-----c-c------c-C-CCCeecChHHH
Confidence 49999999999999998889999999999999 9999999876554322 1 0 0 0 0 22344568899
Q ss_pred HHHHHHcCCceeE
Q 018565 327 DYVLRQAGFSRYN 339 (354)
Q Consensus 327 ~~ll~~aGf~~~~ 339 (354)
.+++.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999998764
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=121.27 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=78.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC--CC-cc-----eEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG--VP-EA-----DAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~--~~-~~-----D~i 251 (354)
++.+|||+|||+|..+..++++.+ ..+++++|+ +++++.+.+ ..++.++.+|+.+. .+ ++ .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999887 689999999 888877653 23466788999872 22 22 345
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
++.+.+++++++++..+|++++++|+| ||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~p-gG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGP-GGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCC-CCEEEE
Confidence 666889999999999999999999999 999886
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=110.31 Aligned_cols=132 Identities=11% Similarity=0.029 Sum_probs=101.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCC-C---
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFD-G--- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~--- 244 (354)
.+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ..+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 789999999 777776411 3479999999998 4
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHH
Q 018565 245 VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLK 324 (354)
Q Consensus 245 ~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~ 324 (354)
.+.||.|+-+.++|+++.+.....++++.++||| ||.+++.....++... . +.....+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp-gG~~ll~~~~~~~~~~-~------------------gpp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP-GARQLLITLDYDQSEM-A------------------GPPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEcCCCCC-C------------------CcCCCCCHH
Confidence 2359999999999999999999999999999999 9988887765533211 0 001235788
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018565 325 EWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~ 342 (354)
++.++|+. +|.+..+.+
T Consensus 171 eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 171 EVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHhcC-CceEEEEee
Confidence 99988864 455554443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=103.17 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=74.4
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CC--CcceEEEec-ccccc
Q 018565 193 LVDIGGNDGTTLRTLTKAF---PRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GV--PEADAAIIK-WVLHD 259 (354)
Q Consensus 193 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~--~~~D~i~~~-~~lh~ 259 (354)
|||+|||+|..+..+.+.+ |..+++++|+ +++++.+++ ..+++++..|+.+ ++ ++||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 5689999999 999988875 3589999999988 43 359999995 55999
Q ss_pred CChHHHHHHHHHHHHhcCCCCc
Q 018565 260 WGDDECIKILKNCKEAITKDKG 281 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG 281 (354)
+++++..++++++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p-gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP-GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE-EE
T ss_pred CCHHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999999999 87
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=111.54 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=97.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc----ccCCCeEEeecCCCCC-----C-CcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA----EKCHGVEHVGGDMFDG-----V-PEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~d~~~~-----~-~~~D~i~~~~ 255 (354)
..++.+|||+|||+|.++..+++..+..+++++|+ +++++.+ +...++.++.+|..++ + ..+|+|++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d- 148 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD- 148 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC-
Confidence 66788999999999999999999887668999999 7766643 3346789999998653 1 248998843
Q ss_pred ccccCChH-HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 256 VLHDWGDD-ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 256 ~lh~~~~~-~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
.+++ ....+|+++++.||| ||+++|.=...+-+.. . .. . +..++..++++++|
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKp-GG~lvI~v~~~~~d~~-~------------------~~-~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKD-GGYLLLAIKARSIDVT-K------------------DP-K-EIFKEEIRKLEEGG 202 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCC-CcEEEEEEecccccCc-C------------------CH-H-HHHHHHHHHHHHcC
Confidence 3322 334678999999999 9999995211111111 0 00 0 11244569999999
Q ss_pred CceeEEEEcCCc---eeEEEEe
Q 018565 335 FSRYNITSIHAV---QSLIEAF 353 (354)
Q Consensus 335 f~~~~~~~~~~~---~~~i~~~ 353 (354)
|+.++...+... +..+.++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEE
Confidence 999999887433 5555544
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=107.64 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=104.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCCcceEEEeccccccCC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVPEADAAIIKWVLHDWG 261 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~ 261 (354)
+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ ..+.||+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 8999999 888887764 3468889999887 334699999998887665
Q ss_pred hH-------------------HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 262 DD-------------------ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 262 ~~-------------------~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
++ ...++++++.++|+| ||++++++.... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~~~~~~~~~~------------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE-GGRVQLIQSSLN------------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC-CCEEEEEEeccC------------------------------C
Confidence 32 135789999999999 999998663211 1
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 323 LKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
..++.+++++.||+...+..-+.++--+.++|
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 56778889999999998888777776666654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=107.88 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=108.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeE-EeecCCCC-C-CC--cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVE-HVGGDMFD-G-VP--EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~-~~~~d~~~-~-~~--~~D~i~~~~ 255 (354)
+....||+||||+|..-...- --|..++|.+|. ++|-+.+.+ ...+. |+.++-.+ + .+ ++|+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 445678999999998754432 236889999999 777776543 45566 78887777 4 33 599999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
+|....+ ..+.|++++++|+| ||++++.|++..+... .... .....+-..... ..|-..|.+.| +.|+++-|
T Consensus 154 vLCSve~--~~k~L~e~~rlLRp-gG~iifiEHva~~y~~-~n~i--~q~v~ep~~~~~-~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVED--PVKQLNEVRRLLRP-GGRIIFIEHVAGEYGF-WNRI--LQQVAEPLWHLE-SDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEeccCC--HHHHHHHHHHhcCC-CcEEEEEecccccchH-HHHH--HHHHhchhhhee-ccceEEehhHH-HHhhhccc
Confidence 9987554 56999999999999 9999999999877665 2100 111222211222 56777777776 57788899
Q ss_pred ceeEEEEcCC--ceeEEE
Q 018565 336 SRYNITSIHA--VQSLIE 351 (354)
Q Consensus 336 ~~~~~~~~~~--~~~~i~ 351 (354)
+..+...... .+.+|+
T Consensus 226 ~~~~~kr~~~~ttw~~V~ 243 (252)
T KOG4300|consen 226 SIDSCKRFNFGTTWVIVE 243 (252)
T ss_pred ccchhhcccCCceEEEEe
Confidence 9988766643 344444
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=111.63 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=87.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCCCCC--cceEEEeccccccCChH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFDGVP--EADAAIIKWVLHDWGDD 263 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~~~~~ 263 (354)
.+..+|||||||+|..+..+.+..|+.+++++|+ +++++.+++ ..++++..+|+.++++ .||+|++..++||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 4567999999999999999999888999999999 899999876 5678889999888654 49999999999999888
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
...++++++.+++ ++.++|.|...+.
T Consensus 122 ~~~~~l~el~r~~---~~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCS---NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhc---CcEEEEEEeeCCC
Confidence 8889999999986 4588888876543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-12 Score=107.29 Aligned_cols=121 Identities=17% Similarity=0.313 Sum_probs=94.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC-cceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-EADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-~~D~i~~~~~lh 258 (354)
..+..+|||||||+|.++..+++++|+.+++++|. +++++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 55778999999999999999999999999999999 888887764 3578999998765444 599999876554
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+ ...+++.+.+.|+| ||++++..... .+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~-gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP-GGRLVLTFILL------------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC-CeEEEEEEecH------------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 34689999999999 99987743211 024566788999999877
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
++...
T Consensus 153 ~~~~~ 157 (187)
T PRK08287 153 DCVQL 157 (187)
T ss_pred eEEEE
Confidence 75443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=111.28 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=103.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc---cc----CCCeEEeecCCCC-C-CC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA---EK----CHGVEHVGGDMFD-G-VP 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~----~~~v~~~~~d~~~-~-~~ 246 (354)
..+..+++ --.+++|||||||+|.++..++++.+. .++++|. +...... +. ..++.+...-+.+ + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34444553 235689999999999999999998654 5899996 3222221 11 2334444333333 3 23
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
.||+|++..||+|..++ ...|+.+++.|+| ||.|++=..+.+.+.. ..-.+...+ . . |- ...-..|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~-gGeLvLETlvi~g~~~-~~L~P~~rY-a--~-m~--nv~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP-GGELVLETLVIDGDEN-TVLVPEDRY-A--K-MR--NVWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC-CCEEEEEEeeecCCCc-eEEccCCcc-c--C-CC--ceEEeCCHHHH
Confidence 49999999999997766 4889999999999 9999887777776544 210111111 0 0 00 11245689999
Q ss_pred HHHHHHcCCceeEEEEc
Q 018565 327 DYVLRQAGFSRYNITSI 343 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~ 343 (354)
..|++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=106.68 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=96.1
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EAD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D 249 (354)
.+.+.++ .-++.++||+|||.|..+..|+++ +..++++|. +..++.+++ .-.|+....|+.+ +++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3444455 446789999999999999999998 789999999 666665443 4558889999988 554 499
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHH
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYV 329 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~l 329 (354)
+|++..++++++.+...++++++.+.++| ||.+++......++.. .+ . .....+...|+.+.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p-GG~~li~~~~~~~d~p--~~-----~----------~~~f~~~~~EL~~~ 158 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP-GGYNLIVTFMETPDYP--CP-----S----------PFPFLLKPGELREY 158 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE-EEEEEEEEEB--SSS----S-----S------------S--B-TTHHHHH
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC-cEEEEEEEecccCCCC--CC-----C----------CCCcccCHHHHHHH
Confidence 99999999999999999999999999999 9988886654332211 10 0 11123456788888
Q ss_pred HHHcCCceeEE
Q 018565 330 LRQAGFSRYNI 340 (354)
Q Consensus 330 l~~aGf~~~~~ 340 (354)
++ ||++++.
T Consensus 159 y~--dW~il~y 167 (192)
T PF03848_consen 159 YA--DWEILKY 167 (192)
T ss_dssp TT--TSEEEEE
T ss_pred hC--CCeEEEE
Confidence 75 5887764
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-12 Score=110.05 Aligned_cols=149 Identities=15% Similarity=0.094 Sum_probs=99.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C--C-CcceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G--V-PEADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~--~-~~~D~i~~~~~l 257 (354)
.+..+|||||||+|.++..+.+. ..+++++|. +.++..+++ ..++++...|+.+ + . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999888875 467999998 777766653 3457777777665 2 2 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
++.++. ..+|+.+.+.|+| ||.+++.......... .........................+.++|.++++++||++
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~-gG~l~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 200 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP-GGLVFFSTLNRNLKSY-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEV 200 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC-CcEEEEEecCCChHHH-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeE
Confidence 987764 4789999999999 9998876542111000 00000000000000000001234558999999999999999
Q ss_pred eEEEE
Q 018565 338 YNITS 342 (354)
Q Consensus 338 ~~~~~ 342 (354)
++...
T Consensus 201 v~~~~ 205 (233)
T PRK05134 201 QDITG 205 (233)
T ss_pred eeeee
Confidence 98754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=104.97 Aligned_cols=132 Identities=10% Similarity=0.002 Sum_probs=101.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCCC----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFDG---- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~~---- 244 (354)
.+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ..+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 789999999 777775421 36789999999983
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHH
Q 018565 245 VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLK 324 (354)
Q Consensus 245 ~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~ 324 (354)
.+.||+|+-+.++|+++.+...+.++.+.++|+| ||.++++....++... . +.....+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p-gG~~~l~~~~~~~~~~-~------------------gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA-GCRGLLVTLDYPQEEL-A------------------GPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC-CCeEEEEEEEeCCccC-C------------------CCCCCCCHH
Confidence 2358999999999999999999999999999999 9987776655543221 1 111245789
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018565 325 EWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~ 342 (354)
|+.++++. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99998863 366665544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=115.12 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=95.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCCCCcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDGVPEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~~~~D~i~~~~~ 256 (354)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 578999999 889887764 13578888887653346999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc--cCCcccCCHHHHHHHHHHcC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH--TNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~g~~~t~~e~~~ll~~aG 334 (354)
+||++++....+++.+.+ +.+ |.++|.. .+. .. . +.......... ... .......+.+++.++++++|
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~--g~liIs~--~p~-~~-~--~~~l~~~g~~~-~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE--KRLIISF--APK-TL-Y--YDILKRIGELF-PGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC--CEEEEEe--CCc-ch-H--HHHHHHHHhhc-CCCCcCceeeeCCHHHHHHHHHHCC
Confidence 999998877788888875 444 4555532 111 11 0 00000000000 000 00012337999999999999
Q ss_pred CceeEEEEcC
Q 018565 335 FSRYNITSIH 344 (354)
Q Consensus 335 f~~~~~~~~~ 344 (354)
|++.+..-..
T Consensus 292 f~v~~~~~~~ 301 (315)
T PLN02585 292 WKVARREMTA 301 (315)
T ss_pred CEEEEEEEee
Confidence 9988765443
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-12 Score=105.41 Aligned_cols=138 Identities=18% Similarity=0.216 Sum_probs=98.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCC-eEEeecCCCC--CCC-cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHG-VEHVGGDMFD--GVP-EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-v~~~~~d~~~--~~~-~~D~i~~~~~lh 258 (354)
...+.||.|+|.|..+..++... --++-.+|. ++.++.|++ ..+ .++.+....+ |.+ .||+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 56899999999999999876543 235677777 788888874 223 3344443333 433 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
|++|++..++|++++++|+| +|.|+|=|.+...... .+|-. .++-.|+.+.|.++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~~----------~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGFD----------EFDEE-----DSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSEE----------EEETT-----TTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCCc----------ccCCc-----cCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 9999998888764321 11111 56678999999999999999999
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
+...-
T Consensus 198 ~~~~Q 202 (218)
T PF05891_consen 198 KEEKQ 202 (218)
T ss_dssp EEEE-
T ss_pred Eeccc
Confidence 86544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=115.62 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=87.8
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCCCCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFDGVP 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~~~ 246 (354)
+.+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.++. ..++++..+|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 45566666 33446999999999999999999999999999999 777777764 1378999999987543
Q ss_pred --cceEEEecccccc---CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 --EADAAIIKWVLHD---WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 --~~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.||+|+++-.+|. +++..+.++++.+++.|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp-GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc-CCEEEEEE
Confidence 5999999866654 4556678999999999999 99999874
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-12 Score=105.35 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=95.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCCCC--cceEEEecccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDGVP--EADAAIIKWVLHD 259 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~ 259 (354)
.....+++|+|||.|.++..|+.++ -+.+++|. +..++.+++ .++|+++..|+-+..| .||+|+++.++|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999985 47899999 888888875 5889999999988444 4999999999999
Q ss_pred CCh-HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 260 WGD-DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 260 ~~~-~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+++ ++...+++++.++|+| ||.|++.... +.. -. ..|.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p-gG~LV~g~~r-d~~-----------------c~---~wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP-GGHLVFGHAR-DAN-----------------CR---RWGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE-EEEEEEEEE--HHH-----------------HH---HTT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC-CCEEEEEEec-CCc-----------------cc---ccCcccchHHHHHHHHHH-hhhe
Confidence 986 6788999999999999 9999986642 100 00 223455678888888885 5555
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
+....
T Consensus 176 ~~~~~ 180 (201)
T PF05401_consen 176 ERVEC 180 (201)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=101.97 Aligned_cols=90 Identities=19% Similarity=0.167 Sum_probs=73.5
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C-CCcceEEEeccccccC
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G-VPEADAAIIKWVLHDW 260 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~~~~D~i~~~~~lh~~ 260 (354)
+.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ + .++||+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 67999999999999999998899999999999 777766543 3569999999987 3 24699998866 543
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...+++.+++.|+| ||.+++.
T Consensus 121 ----~~~~~~~~~~~Lkp-gG~lvi~ 141 (181)
T TIGR00138 121 ----LNVLLELTLNLLKV-GGYFLAY 141 (181)
T ss_pred ----HHHHHHHHHHhcCC-CCEEEEE
Confidence 23578888999999 9998875
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-12 Score=105.00 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=108.6
Q ss_pred ceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC-----CC--cceEEEecc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPR--IRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG-----VP--EADAAIIKW 255 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~-----~~--~~D~i~~~~ 255 (354)
.+||+||||.|.+..-+++..|+ +.+...|. |..++..++ ..++.-...|+..+ .+ ..|.|++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999998888 88999999 888888775 35565556666552 11 389999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcc---cCCHHHHHHHHHH
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGK---ERSLKEWDYVLRQ 332 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~---~~t~~e~~~ll~~ 332 (354)
+|...+++....++++++++||| ||.|++-|....+-.. - .+. ....++.+..+. +.|. .++.+++.+++.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP-GG~llfrDYg~~Dlaq-l-RF~-~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP-GGSLLFRDYGRYDLAQ-L-RFK-KGQCISENFYVR-GDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC-CcEEEEeecccchHHH-H-hcc-CCceeecceEEc-cCCceeeeccHHHHHHHHHh
Confidence 99999999999999999999999 9999998765433211 0 000 112233343344 3343 3699999999999
Q ss_pred cCCceeEE
Q 018565 333 AGFSRYNI 340 (354)
Q Consensus 333 aGf~~~~~ 340 (354)
+||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99988764
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=111.87 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=85.8
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC-cceE
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP-EADA 250 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~-~~D~ 250 (354)
.++..++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++. .-..++..+|.+++.+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3444454 23346899999999999999999999999999999 788887764 2345677888877544 5999
Q ss_pred EEeccccccC---ChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 251 AIIKWVLHDW---GDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 251 i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|+++..+|.. ......++++++.+.|+| ||.++|+..
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp-gG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS-GGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc-CCEEEEEEe
Confidence 9999988863 334568999999999999 999998654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=102.08 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=76.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~ 259 (354)
++.+|||+|||+|..+..++++.|+.+++++|. +++++.+++ .++++++.+|+.+ +.. +||+|++... .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~- 122 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A- 122 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c-
Confidence 478999999999999999999999999999999 888877764 3459999999887 333 5999998752 1
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
....+++.+++.|+| ||.+++..
T Consensus 123 ----~~~~~l~~~~~~Lkp-GG~lv~~~ 145 (187)
T PRK00107 123 ----SLSDLVELCLPLLKP-GGRFLALK 145 (187)
T ss_pred ----CHHHHHHHHHHhcCC-CeEEEEEe
Confidence 245789999999999 99999864
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=103.13 Aligned_cols=98 Identities=22% Similarity=0.377 Sum_probs=80.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~ 259 (354)
...+|||+|||+|..+..+++++|+.+++++|+ +.+++.+++ ...+++...|.++..+ .||+|+++-.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999999999999 888887764 2339999999999654 5999999988876
Q ss_pred CCh---HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 260 WGD---DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 260 ~~~---~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
-.+ +...++++.+.+.|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~-~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP-GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC-CCEEEEEe
Confidence 543 3568999999999999 99997743
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=102.06 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=93.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC---CCC--cceEEEeccccccCCh
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD---GVP--EADAAIIKWVLHDWGD 262 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~--~~D~i~~~~~lh~~~~ 262 (354)
+..+|||||||+|.++..+++. ...+++++|+ ++++..++. .+++++.+|+.+ +++ +||+|+++.++|++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 5679999999999999888765 4567899999 788877764 468888888865 233 4999999999999876
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-chh--h-----hhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KFK--S-----VRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~~--~-----~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
. .++|+++.+.+++ +++.- +.... .. ... . ....+....... ...+.++.+++.++++++|
T Consensus 91 ~--~~~l~e~~r~~~~----~ii~~---p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 91 P--EEILDEMLRVGRH----AIVSF---PNFGY-WRVRWSILTKGRMPVTGELPYDWYNT-PNIHFCTIADFEDLCGELN 159 (194)
T ss_pred H--HHHHHHHHHhCCe----EEEEc---CChhH-HHHHHHHHhCCccccCCCCCccccCC-CCcccCcHHHHHHHHHHCC
Confidence 4 4778888776554 33321 11100 00 000 0 000000000000 2235678999999999999
Q ss_pred CceeEEEEcC
Q 018565 335 FSRYNITSIH 344 (354)
Q Consensus 335 f~~~~~~~~~ 344 (354)
|++++....+
T Consensus 160 f~v~~~~~~~ 169 (194)
T TIGR02081 160 LRILDRAAFD 169 (194)
T ss_pred CEEEEEEEec
Confidence 9999877664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-11 Score=94.45 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=76.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C--CCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G--VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~--~~~~D~i~~~~ 255 (354)
..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|... + .+.||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 44567999999999999999999999999999999 777777653 3578888888664 1 23599999876
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+ ...++++++++.|+| ||.+++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~-gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP-GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC-CCEEEEE
Confidence 543 345899999999999 9998874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=104.50 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=99.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CC-CeEEeecCCCC-C--C-CcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CH-GVEHVGGDMFD-G--V-PEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~v~~~~~d~~~-~--~-~~~D~i~~~~~l 257 (354)
...+|||+|||+|.++..+++.. .+++++|+ +.++..++. .. ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888764 46999999 777776654 22 58888888765 2 2 359999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh-c---c-c-CCcccCCHHHHHHHHH
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM-A---H-T-NKGKERSLKEWDYVLR 331 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~-~---~-~-~~g~~~t~~e~~~ll~ 331 (354)
|+..+. ..+|++++++|+| ||.+++.....+... . .......... . . + ......+.++|.++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~-gG~l~i~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 192 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP-GGILFFSTINRTPKS-----Y--LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLE 192 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC-CcEEEEEecCCCchH-----H--HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHH
Confidence 997765 4789999999999 999888654221100 0 0000000000 0 0 0 1123457899999999
Q ss_pred HcCCceeEEEE
Q 018565 332 QAGFSRYNITS 342 (354)
Q Consensus 332 ~aGf~~~~~~~ 342 (354)
++||+++++..
T Consensus 193 ~~G~~i~~~~~ 203 (224)
T TIGR01983 193 SAGLRVKDVKG 203 (224)
T ss_pred HcCCeeeeeee
Confidence 99999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-10 Score=100.77 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=96.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HhhhcccCCCeEEeecCCCCC------CCcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PH----VVCVAEKCHGVEHVGGDMFDG------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~~------~~~~D~i~~~ 254 (354)
+.+..+|||+|||+|.++..+++.. +.-+++++|+ +. ++..++...+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999875 4558999998 54 455555457899999998653 2358999887
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
.. . + ++...++.++++.||| ||.++|.......+.. .+ ....+. +|. ++|+++|
T Consensus 210 va-~--p-dq~~il~~na~r~LKp-GG~~vI~ika~~id~g-~~------------------pe~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA-Q--P-DQARIVALNAQYFLKN-GGHFIISIKANCIDST-AK------------------PEVVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC-C--c-chHHHHHHHHHHhccC-CCEEEEEEeccccccC-CC------------------HHHHHH-HHH-HHHHHcC
Confidence 64 1 2 3455667789999999 9999994221111111 00 000112 444 8899999
Q ss_pred CceeEEEEcCC---ceeEEEE
Q 018565 335 FSRYNITSIHA---VQSLIEA 352 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~ 352 (354)
|+.++.+.++. .++++.+
T Consensus 264 F~~~e~v~L~Py~~~h~~v~~ 284 (293)
T PTZ00146 264 LKPKEQLTLEPFERDHAVVIG 284 (293)
T ss_pred CceEEEEecCCccCCcEEEEE
Confidence 99999888743 3555553
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=103.05 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=88.6
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC-c
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-E 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-~ 247 (354)
.+.+++.++ .....+|||+|||.|.+++.+++.+|+.+++.+|. ...++.++. .++..+...|.+++.. .
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 356677777 55556999999999999999999999999999999 667777665 2333677788888655 5
Q ss_pred ceEEEecccccc---CChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHD---WGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
||+|+++-.+|. .......++++.+.+.|++ ||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~-gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP-GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc-CCEEEEEEc
Confidence 999999999986 2233455899999999999 999999765
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=99.64 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=93.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~ 259 (354)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++. ..++++..+|++++.+ .||+|+++-..+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999999 888887764 3469999999988543 5999998543332
Q ss_pred ------CChH------------------HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 260 ------WGDD------------------ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 260 ------~~~~------------------~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
+..+ ....+++++.+.|+| ||.+++.. ..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~-gG~~~~~~------~~-------------------- 219 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP-GGWLLLEI------GY-------------------- 219 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc-CCEEEEEE------Cc--------------------
Confidence 2111 124789999999999 99887621 00
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
...+++.++++++||+.++++.-
T Consensus 220 -----~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 -----DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred -----cHHHHHHHHHHhCCCCceEEEeC
Confidence 12467888899999998887664
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-11 Score=101.57 Aligned_cols=98 Identities=18% Similarity=0.108 Sum_probs=77.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCC-CC-C--CC--cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDM-FD-G--VP--EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~-~~-~--~~--~~D~i~~~~ 255 (354)
+..+|||+|||+|..+..+++.+|+.+++++|+ +++++.+++ ..+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999999 888887764 36799999998 43 3 33 499998865
Q ss_pred ccccCC------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWG------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
...... ......+|++++++||| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp-gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP-GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC-CCEEEEEc
Confidence 432111 11135789999999999 99999854
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-10 Score=99.97 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=99.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~l 257 (354)
..+..+|||+|||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|+++-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 777777664 3579999999988644 59999985322
Q ss_pred cc------CCh------------------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc
Q 018565 258 HD------WGD------------------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA 313 (354)
Q Consensus 258 h~------~~~------------------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (354)
.. .++ +...++++++.+.|+| ||.+++ +. ..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~-gG~l~~-e~-----g~------------------ 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP-GGWLLL-EI-----GY------------------ 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc-CCEEEE-EE-----Cc------------------
Confidence 11 111 1236788999999999 998887 21 11
Q ss_pred ccCCcccCCHHHHHHHHHHcCCceeEEEE-cCCceeEEEEe
Q 018565 314 HTNKGKERSLKEWDYVLRQAGFSRYNITS-IHAVQSLIEAF 353 (354)
Q Consensus 314 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~ 353 (354)
...+++.+++++.||+.+++.. +.+...++.++
T Consensus 241 -------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0145688899999998776643 34555555554
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.4e-10 Score=94.77 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=86.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCC-CC--
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFD-GV-- 245 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~-- 245 (354)
.+..+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..+|++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999997 778999999 766666411 4689999999999 42
Q ss_pred ---CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 246 ---PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 246 ---~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+.||+|+-..+++.++++...+..+++.++|+| ||.++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p-gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN-NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC-CcEEEEEEEecC
Confidence 259999999999999999999999999999999 999999876443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-10 Score=98.30 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=88.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~D~i~~~~~lh~ 259 (354)
.++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++ ..++.+..+|. .||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 3578999999999999887766543 36999999 888887765 12333333321 6999987532
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
.+....+++++.+.||| ||.+++.+... ...+++.+.+++.||++.+
T Consensus 189 --~~~~~~l~~~~~~~Lkp-gG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 189 --ANPLLELAPDLARLLKP-GGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHHhcCC-CcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEE
Confidence 23456789999999999 99999864321 0256778889999999998
Q ss_pred EEEcCCceeEEE
Q 018565 340 ITSIHAVQSLIE 351 (354)
Q Consensus 340 ~~~~~~~~~~i~ 351 (354)
+.......+++.
T Consensus 236 ~~~~~~W~~~~~ 247 (250)
T PRK00517 236 VLERGEWVALVG 247 (250)
T ss_pred EEEeCCEEEEEE
Confidence 887666655544
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=97.29 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=100.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCC-CC-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFD-GV- 245 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~- 245 (354)
..+..+||..|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..+|++..+|||+ +.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456789999999999999999997 679999999 777776511 4578999999999 32
Q ss_pred --CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCH
Q 018565 246 --PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSL 323 (354)
Q Consensus 246 --~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~ 323 (354)
+.||+|+=+.+++.++++...+..+.+.++|+| ||+++++....+.... . +.....+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p-~g~~lLi~l~~~~~~~-~------------------GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP-GGRGLLITLEYPQGEM-E------------------GPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE-EEEEEEEEEES-CSCS-S------------------SSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC-CCcEEEEEEEcCCcCC-C------------------CcCCCCCH
Confidence 249999999999999999999999999999999 9996666555443221 0 11122368
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 018565 324 KEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~~ 342 (354)
+|+.+++. .+|++.....
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 99999999 7888877654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-09 Score=94.34 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=112.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC------CCcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR--IRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG------VPEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~------~~~~D~i 251 (354)
..+.+||||.||.|.+....+..+|. .++...|. +..++..++ .+-++|..+|.|+. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 78889998 666665543 45559999999983 2458999
Q ss_pred EeccccccCChHH-HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc--cCCcccCCHHHHHH
Q 018565 252 IIKWVLHDWGDDE-CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH--TNKGKERSLKEWDY 328 (354)
Q Consensus 252 ~~~~~lh~~~~~~-~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~g~~~t~~e~~~ 328 (354)
+.+-+...|+|.+ +...|+.+++++.| ||.|+...--.++... .. ..-++.+-. ..--+.||..|+.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p-gG~lIyTgQPwHPQle-------~I-Ar~LtsHr~g~~WvMRrRsq~EmD~ 284 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP-GGYLIYTGQPWHPQLE-------MI-ARVLTSHRDGKAWVMRRRSQAEMDQ 284 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC-CcEEEEcCCCCCcchH-------HH-HHHHhcccCCCceEEEecCHHHHHH
Confidence 9999999999976 55579999999999 9988875432222211 11 111111100 00016789999999
Q ss_pred HHHHcCCceeEEEEc-CCceeEEEEeC
Q 018565 329 VLRQAGFSRYNITSI-HAVQSLIEAFP 354 (354)
Q Consensus 329 ll~~aGf~~~~~~~~-~~~~~~i~~~~ 354 (354)
|.+++||+..+.+-- -+.+.|..|+|
T Consensus 285 Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 285 LVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHcCCchhhheeccCCceEEEeecC
Confidence 999999987654332 34466665553
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=97.50 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=75.5
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCC---C
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGV---P 246 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~---~ 246 (354)
+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +++++.+++ ..++++..+|..+.. .
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 55678999999999999999988764 568999999 888877664 246899999998733 2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+||+|++...+++++ +++.+.|+| ||+|++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~-gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD-GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc-CcEEEEE
Confidence 599999998887655 356788999 9999874
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=90.17 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCC-eEEeecCCCCCCC--cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHG-VEHVGGDMFDGVP--EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~-v~~~~~d~~~~~~--~~D~i~~~~~ 256 (354)
.+..+|||+|||+|.++..+++. +.+++++|. +++++.+++ .++ +.+..+|+.++++ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 678999999 888877753 122 8899999888544 4999998654
Q ss_pred cccCC-------------------hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC
Q 018565 257 LHDWG-------------------DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK 317 (354)
Q Consensus 257 lh~~~-------------------~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (354)
++..+ ......+++++.++||| ||.+++.... .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~-gG~~~~~~~~-----~---------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP-GGRILLLQSS-----L---------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC-CeEEEEEEcc-----c----------------------
Confidence 43211 12346789999999999 9988875310 0
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
...+++.++++++||++..+...
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeec
Confidence 02356788999999998876554
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=94.51 Aligned_cols=136 Identities=13% Similarity=0.196 Sum_probs=103.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C----CCcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G----VPEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~----~~~~D~i~~ 253 (354)
.....+|||+|||+|..+..++++++..+++++++ +.+.+.|++ .+||+++.+|+.. . ...||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34489999999999999999999999999999999 888887775 6899999999987 2 224899999
Q ss_pred ccccccCChH----------------HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC
Q 018565 254 KWVLHDWGDD----------------ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK 317 (354)
Q Consensus 254 ~~~lh~~~~~----------------~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (354)
+-..+.-+.. ....+++.+.+.||| ||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~-~G~l~~V~r~---------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP-GGRLAFVHRP---------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC-CCEEEEEecH----------------------------
Confidence 7666543322 256889999999999 9999885320
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEc---CC---ceeEEEEeC
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSI---HA---VQSLIEAFP 354 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~---~~---~~~~i~~~~ 354 (354)
-...|+.+++.+.+|...++..+ .+ ..-+|+++|
T Consensus 173 ---erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 173 ---ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred ---HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 02567788888888887776655 22 244666553
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.4e-10 Score=91.25 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=99.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC---CC--cceEEEeccccccC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG---VP--EADAAIIKWVLHDW 260 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~---~~--~~D~i~~~~~lh~~ 260 (354)
.+++.+|||+|||.|.++..|.+. .++++.++++ ++.+..+. ...+.++.+|+.+. +| +||.|+++.+|.+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 357899999999999999888885 5899999999 55444444 35688999999873 55 39999999999987
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-chh-----hhhhhccHH-hhcccCCcccCCHHHHHHHHHHc
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KFK-----SVRLMLDMV-MMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~~-----~~~~~~~l~-~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
..++ ++|+++.|+ |.+.+|.= |.... .. ... .....-.+. .+-.|+|=+..|..++++++++.
T Consensus 89 ~~P~--~vL~EmlRV----gr~~IVsF---PNFg~-W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 89 RRPD--EVLEEMLRV----GRRAIVSF---PNFGH-WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred hHHH--HHHHHHHHh----cCeEEEEe---cChHH-HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 6554 677777554 44555422 21111 00 000 000000010 11123556677999999999999
Q ss_pred CCceeEEEEcCCc
Q 018565 334 GFSRYNITSIHAV 346 (354)
Q Consensus 334 Gf~~~~~~~~~~~ 346 (354)
|+++.+...+.+.
T Consensus 159 ~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 159 GIRIEERVFLDGG 171 (193)
T ss_pred CCEEEEEEEEcCC
Confidence 9999998887543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-10 Score=92.31 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=88.5
Q ss_pred EEeec-hHHhhhccc---------CCCeEEeecCCCC-CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceE
Q 018565 217 INFDL-PHVVCVAEK---------CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 217 ~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~l 283 (354)
+++|. ++|++.|++ ..+++++.+|+.+ |++ .||+|++..++|++++. .++|++++++||| ||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp-GG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP-GSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc-CeEE
Confidence 47888 889888743 2469999999988 665 39999999999998754 5899999999999 9999
Q ss_pred EEEeeeeCCCCCCCcchhhhhhhccHHhh---cccCC-----------cccCCHHHHHHHHHHcCCceeEEEEcCCc-ee
Q 018565 284 IIVEAIIEEDDGVDNKFKSVRLMLDMVMM---AHTNK-----------GKERSLKEWDYVLRQAGFSRYNITSIHAV-QS 348 (354)
Q Consensus 284 li~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-----------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~ 348 (354)
++.|...++... .... .......... ..... ....+.+++.++|+++||+.++....... ..
T Consensus 78 ~i~d~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~ 154 (160)
T PLN02232 78 SILDFNKSNQSV-TTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMG 154 (160)
T ss_pred EEEECCCCChHH-HHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhH
Confidence 999987554321 1000 0000000000 00000 13458999999999999999988777543 33
Q ss_pred EEEE
Q 018565 349 LIEA 352 (354)
Q Consensus 349 ~i~~ 352 (354)
+..+
T Consensus 155 ~~~~ 158 (160)
T PLN02232 155 NLVA 158 (160)
T ss_pred eeEe
Confidence 4443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-10 Score=95.76 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=76.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C---CC--cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G---VP--EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~---~~--~~D~i~~~~ 255 (354)
...++||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .+|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 888877653 3589999999875 2 33 488888765
Q ss_pred ccccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+ |+... ...+++.++++||| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp-gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK-GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC-CCEEEEEe
Confidence 432 33221 14689999999999 99998865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-09 Score=98.56 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=96.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC-CC---cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG-VP---EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~-~~---~~D~i~~~~~lh 258 (354)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|++++ .+ .||+|+++-.-.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999999 889888765 45799999999773 22 499999854321
Q ss_pred cCCh-----------------------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 259 DWGD-----------------------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 259 ~~~~-----------------------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
.-.+ +...++++.+.+.|+| ||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp-gG~lil-EiG~------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE-GGFLLL-EHGF------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC-CcEEEE-EECc-------------------------
Confidence 1000 1234677778889999 887653 3211
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEc-CCceeEEEEe
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSI-HAVQSLIEAF 353 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~ 353 (354)
...+++.+++++.||+.+++..- .+...++.++
T Consensus 384 -----~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 -----DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -----cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 01557788899999988777654 4455555554
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.2e-10 Score=95.08 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=76.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV--- 245 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~--- 245 (354)
..++..++ ..++.+|||||||+|..+..+++.. ++.+++++|. +++++.+++ ..+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 34445555 6678999999999999999888875 4578999999 888887765 357999999988732
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+||+|++....+..+ +.+.+.||| ||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp-gG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD-GGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC-CcEEEEE
Confidence 3599999987765433 345668999 9998884
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-10 Score=99.95 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEeccccccC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPR---IRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDW 260 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~ 260 (354)
...+|||+|||+|.++..+++..|. .+++++|+ +.++..+++ .+++.+..+|..+ |++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999988764 36899999 888888765 5778999999887 655 4999987543
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+ ..+++++++||| ||.++++.+
T Consensus 161 ~-----~~~~e~~rvLkp-gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP-GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC-CCEEEEEeC
Confidence 1 236788999999 999998753
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=94.02 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=92.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CC-CcceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GV-PEADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~-~~~D~i~~~~~lh~~~~~~ 264 (354)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ .++++++.+|+.+ .. ..||+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 357999999999999999988887789999999 889888876 4679999999998 32 3599999988887654331
Q ss_pred ------------------HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 265 ------------------CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 265 ------------------~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
..++++.....|+| +|.++++ ...... + ....+.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p-~G~~~~~---yss~~~-----------y----------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP-TGSAGFA---YSGRPY-----------Y----------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC-CceEEEE---Eecccc-----------c----------cccCCHHHH
Confidence 23566777888888 8866665 111110 0 123368899
Q ss_pred HHHHHHcCCce
Q 018565 327 DYVLRQAGFSR 337 (354)
Q Consensus 327 ~~ll~~aGf~~ 337 (354)
.++++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999864
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=91.77 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=74.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC---------CC--cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------VP--EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~--~~D~i~~~ 254 (354)
+.++.+|||+|||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 3567899999999999999999886 45789999995432 235699999999883 22 49999997
Q ss_pred cccccCChHH---------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 255 WVLHDWGDDE---------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 255 ~~lh~~~~~~---------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
...|..+... ...+|+.+++.|+| ||.+++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp-GG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP-GGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence 7665543221 24689999999999 99998854
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=88.83 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=79.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CCCcceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GVPEADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~~~D~i~~~~~ 256 (354)
..++.+++|||||+|..+.+++..+|+.+++.+|. ++.++..++ .++++++.+|.-+ +.+.+|.|++.--
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 67889999999999999999999999999999998 777766553 6899999998876 3446999999775
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
- ....+|..+...||| ||+|++.-
T Consensus 112 ~------~i~~ile~~~~~l~~-ggrlV~na 135 (187)
T COG2242 112 G------NIEEILEAAWERLKP-GGRLVANA 135 (187)
T ss_pred C------CHHHHHHHHHHHcCc-CCeEEEEe
Confidence 2 345899999999999 99998743
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=93.82 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=75.9
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---C
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---P 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~ 246 (354)
.+++.+. ..+..+|||||||+|..+..+++..+ +.+++++|+ +++++.+++ .++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 4444455 56788999999999999999998764 467999998 888887764 357999999998732 3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+||+|++.....+. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~-gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE-GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc-CcEEEEE
Confidence 59999987665443 3456788999 9998874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=98.05 Aligned_cols=96 Identities=21% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEeccc--
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIKWV-- 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~~~-- 256 (354)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++-.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999999 888887764 3579999999987544 4999998521
Q ss_pred -----------cccCCh----------HHHHHHHHHHHHhcCCCCceEEE
Q 018565 257 -----------LHDWGD----------DECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 257 -----------lh~~~~----------~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+++-|. +....+++.+.+.|+| ||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~-gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE-NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEE
Confidence 111111 1236789999999999 998764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=90.96 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=74.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C-CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V-PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~-~~~D~i~~ 253 (354)
..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .++++++.+|+.+ + . +.||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5677899999999999999998764 6679999999 888887653 3678999998876 2 2 35999988
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
... ......+++.+.+.|+| ||++++
T Consensus 118 ~~~-----~~~~~~~l~~~~~~Lkp-gG~lv~ 143 (198)
T PRK00377 118 GGG-----SEKLKEIISASWEIIKK-GGRIVI 143 (198)
T ss_pred CCC-----cccHHHHHHHHHHHcCC-CcEEEE
Confidence 532 23456889999999999 999876
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=98.26 Aligned_cols=94 Identities=21% Similarity=0.331 Sum_probs=75.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEeccc----
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIKWV---- 256 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~~~---- 256 (354)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887764 3579999999987543 4999998521
Q ss_pred ---------cccCCh----------HHHHHHHHHHHHhcCCCCceEEE
Q 018565 257 ---------LHDWGD----------DECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 257 ---------lh~~~~----------~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+++.|. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p-gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE-DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC-CCEEEE
Confidence 121111 2346889999999999 998876
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.3e-09 Score=91.17 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=74.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC--cceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP--EADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~--~~D~i~~~~~lh 258 (354)
..+..+|||+|||+|.++..+++. +..+++++|+ +.++..+++ ..+++++.+|+.+..+ .||+|+++-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 445689999999999999998875 3348999999 777776654 3468888999887433 599999864322
Q ss_pred cCCh-------------------HHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 259 DWGD-------------------DECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 259 ~~~~-------------------~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
.-+. .....+++++.+.||| ||+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~-gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP-GGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC-CcEEEEEEec
Confidence 1111 1245688999999999 9999986543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=96.02 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=75.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEec------
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIK------ 254 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~------ 254 (354)
.+|||+|||+|.++..++..+|+.+++++|+ +++++.+++ ..+++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887765 2469999999998654 59999985
Q ss_pred -------cccccCCh----------HHHHHHHHHHHHhcCCCCceEEE
Q 018565 255 -------WVLHDWGD----------DECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 255 -------~~lh~~~~----------~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.++++-|. +...++++++.+.|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP-NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-CCEEEE
Confidence 22222221 1456889999999999 987654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=97.14 Aligned_cols=98 Identities=16% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CCC-cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GVP-EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~~-~~D~i~~~~ 255 (354)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 999988775 3789999999865 233 599998753
Q ss_pred cc-ccCChH-HHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VL-HDWGDD-ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~l-h~~~~~-~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.- ...+.. ...++++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p-gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS-DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC-CcEEEEE
Confidence 11 111211 126899999999999 9998884
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.8e-10 Score=85.56 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=75.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C--C--CcceEEEecccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G--V--PEADAAIIKWVL 257 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~--~--~~~D~i~~~~~l 257 (354)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .+++++..+|+.+ . . ++||+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 888777764 4789999999987 3 3 349999998776
Q ss_pred ccCC------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWG------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+... .+....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~-gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP-GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 6432 11346889999999999 99988764
|
... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=98.30 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CCC--cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GVP--EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~--~~D~i~~~~ 255 (354)
.....+||||||+|.++..+++++|+..++++|+ +.++..+.. ..++.++.+|... .++ .+|.|++..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3456999999999999999999999999999999 777766543 4689999999743 344 489998754
Q ss_pred ccccCChHH-----HHHHHHHHHHhcCCCCceEEEEee
Q 018565 256 VLHDWGDDE-----CIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 256 ~lh~~~~~~-----~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.. .|+... ...+|+.++++|+| ||.+.+...
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkp-GG~l~l~TD 236 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKP-GGTLELRTD 236 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCC-CcEEEEEEE
Confidence 32 243221 15789999999999 999998653
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-09 Score=89.72 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=77.4
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CC-Cc
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GV-PE 247 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~-~~ 247 (354)
++..++ ..+..+|||+|||+|.++..+++..|+.+++++|+ +++++.+++ ..+++++.+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 55678999999999999999998888899999999 888887764 3579999998865 22 23
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+|.+++.. ......+++++.+.|+| ||++++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp-gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKP-GGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCC-CeEEEEEee
Confidence 67665421 12346889999999999 999988653
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-09 Score=79.55 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=76.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc------cCCCeEEeecCCCCCC----CcceEEEeccccccC
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE------KCHGVEHVGGDMFDGV----PEADAAIIKWVLHDW 260 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~~~----~~~D~i~~~~~lh~~ 260 (354)
+++|+|||.|..+..+++ .+..+++++|. ++....++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999998 66666554 1567999999998832 349999999999875
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+....+++.+.+.|+| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~-~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP-GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC-CCEEEEE
Confidence 45677999999999999 9988875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=98.19 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=93.5
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--cceEEEecccc--
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--EADAAIIKWVL-- 257 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~~D~i~~~~~l-- 257 (354)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888887764 3579999999987543 59999984211
Q ss_pred ------------ccCCh----------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 258 ------------HDWGD----------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 258 ------------h~~~~----------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
.+.|. +...++++++.+.|+| ||.+++ |.- . .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~-gG~l~l-Eig-----~-~------------------ 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP-NGKIIL-EIG-----F-K------------------ 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC-CCEEEE-EEC-----C-c------------------
Confidence 11110 1245678889999999 998765 321 1 0
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEc-CCceeEEE
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSI-HAVQSLIE 351 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~ 351 (354)
..+.+.+++++.||..+++..- .+...++.
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~ 303 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVIL 303 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEEE
Confidence 1456677888889987776553 34443443
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-09 Score=88.75 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=97.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------------------
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------------- 230 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 230 (354)
+..++.+...+-.+..+|||||.+|.++..+++.+....+.++|+ +..+..|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334444443355778999999999999999999998888999999 777777653
Q ss_pred -----------------------CCCeEEeecCCCC-CCCcceEEEeccc----cccCChHHHHHHHHHHHHhcCCCCce
Q 018565 231 -----------------------CHGVEHVGGDMFD-GVPEADAAIIKWV----LHDWGDDECIKILKNCKEAITKDKGK 282 (354)
Q Consensus 231 -----------------------~~~v~~~~~d~~~-~~~~~D~i~~~~~----lh~~~~~~~~~~L~~~~~~L~p~gG~ 282 (354)
..+..+...||.. ..+.||+|+|-.+ =-+|.|+-...+++++++.|.| ||.
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p-gGi 204 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP-GGI 204 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc-CcE
Confidence 0122222333443 3456999988543 3468899999999999999999 886
Q ss_pred EEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc--CCceeE
Q 018565 283 VIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA--GFSRYN 339 (354)
Q Consensus 283 lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a--Gf~~~~ 339 (354)
|++ |+ ..+ .+ +..... -......+.......++.+..++.+. ||+.++
T Consensus 205 Lvv-EP----QpW-ks-Y~kaar--~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 205 LVV-EP----QPW-KS-YKKAAR--RSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred EEE-cC----Cch-HH-HHHHHH--HHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 665 32 111 11 110111 11111111222345688889999887 555443
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.6e-09 Score=84.11 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=92.1
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-C-C-cceEEEecccccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-V-P-EADAAIIKWVLHD 259 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~-~-~~D~i~~~~~lh~ 259 (354)
.+|||+|||.|+++..|++.--.-..+++|. +..++.|+. .+.|+|+..|+.+| + + .||+|+-..++-.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 4999999999999999998743334788998 777766653 45599999999995 2 2 4888877655533
Q ss_pred C------ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc
Q 018565 260 W------GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 260 ~------~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
. +.......+..+.+.|+| ||.++|.. .-+|.+|+.+-++.-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~-~gifvItS-------------------------------CN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSP-GGIFVITS-------------------------------CNFTKDELVEEFENF 196 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCC-CcEEEEEe-------------------------------cCccHHHHHHHHhcC
Confidence 2 222334567888889999 88888732 123688889999999
Q ss_pred CCceeEEEEcCCc
Q 018565 334 GFSRYNITSIHAV 346 (354)
Q Consensus 334 Gf~~~~~~~~~~~ 346 (354)
||.....+|.|.+
T Consensus 197 ~f~~~~tvp~ptF 209 (227)
T KOG1271|consen 197 NFEYLSTVPTPTF 209 (227)
T ss_pred CeEEEEeeccceE
Confidence 9999988888743
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=90.07 Aligned_cols=124 Identities=16% Similarity=0.130 Sum_probs=86.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEeccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKWVLH 258 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~~lh 258 (354)
.++.+|||||||||.+++..++... -+++++|+ |..++.+++ .+++.+. ...+ ....||+|+++-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~-- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL-- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC--
Confidence 3567999999999999999888643 47999999 888777765 4566553 2122 2246999997543
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
.+....+...+.+.|+| ||.++++..... ..+++.+.+++ ||++.
T Consensus 235 ---~~vL~~l~~~~~~~l~~-~G~lIlSGIl~~------------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 235 ---ADVLLELAPDIASLLKP-GGYLILSGILEE------------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp ---HHHHHHHHHHCHHHEEE-EEEEEEEEEEGG------------------------------GHHHHHHHHHT-TEEEE
T ss_pred ---HHHHHHHHHHHHHhhCC-CCEEEEccccHH------------------------------HHHHHHHHHHC-CCEEE
Confidence 34567888899999999 998888654321 14566777877 99998
Q ss_pred EEEEcCCceeEEE
Q 018565 339 NITSIHAVQSLIE 351 (354)
Q Consensus 339 ~~~~~~~~~~~i~ 351 (354)
+........+++.
T Consensus 280 ~~~~~~~W~~l~~ 292 (295)
T PF06325_consen 280 EEREEGEWVALVF 292 (295)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEEECCEEEEEE
Confidence 8887665555443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=88.98 Aligned_cols=126 Identities=17% Similarity=0.250 Sum_probs=90.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeE----EeecCCCC-CC-CcceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVE----HVGGDMFD-GV-PEADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~----~~~~d~~~-~~-~~~D~i~~~~~l 257 (354)
.++.++||+|||||.+++..++.. ..+++++|+ |..++.+++ .+.++ ....+..+ +. .+||+|+++= |
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 478999999999999999988864 346899999 877777765 23333 33334333 33 2699998854 3
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
-+-..++...+.+.+|| ||+++++..... ..+...+.+.++||.+
T Consensus 239 ----A~vl~~La~~~~~~lkp-gg~lIlSGIl~~------------------------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 239 ----AEVLVELAPDIKRLLKP-GGRLILSGILED------------------------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred ----HHHHHHHHHHHHHHcCC-CceEEEEeehHh------------------------------HHHHHHHHHHhCCCeE
Confidence 23456889999999999 999887653210 1556678888999999
Q ss_pred eEEEEcCCceeEE
Q 018565 338 YNITSIHAVQSLI 350 (354)
Q Consensus 338 ~~~~~~~~~~~~i 350 (354)
+++..-....++.
T Consensus 284 ~~~~~~~eW~~i~ 296 (300)
T COG2264 284 VEVLEREEWVAIV 296 (300)
T ss_pred eEEEecCCEEEEE
Confidence 9988765555444
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-08 Score=82.91 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=101.8
Q ss_pred hhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhc----hhhhHHHHHhcCCCccCCCceEEEecCCcc
Q 018565 126 PWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACD----TRLAMRAIIEGCPEVFDGIETLVDIGGNDG 201 (354)
Q Consensus 126 ~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~----~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G 201 (354)
.++.|.+.+-+.. + ...++.+.++|+....|+...+.. -..-.+.+++.+.. .++...|.|+|||.+
T Consensus 14 rFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA 84 (219)
T PF05148_consen 14 RFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDA 84 (219)
T ss_dssp HHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-
T ss_pred chHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchH
Confidence 4455666554432 1 123456677777777666654433 22234556655551 345679999999999
Q ss_pred HHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC-CCCc--ceEEEeccccccCChHHHHHHHHHHHHhcCC
Q 018565 202 TTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-GVPE--ADAAIIKWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 202 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~~--~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
.++..+.. ..++.-+|+-.. .+ .+++.|+.. |.++ .|+++++-.|-. .....+++++.|+|||
T Consensus 85 ~la~~~~~---~~~V~SfDLva~------n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~ 150 (219)
T PF05148_consen 85 KLAKAVPN---KHKVHSFDLVAP------NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKP 150 (219)
T ss_dssp HHHHH--S------EEEEESS-S------ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEE
T ss_pred HHHHhccc---CceEEEeeccCC------CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheecc
Confidence 99866532 357888997311 23 367788877 7653 899888776643 3456899999999999
Q ss_pred CCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEE
Q 018565 279 DKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEA 352 (354)
Q Consensus 279 ~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~ 352 (354)
||.|.|.|... +.-..+++.+.++..||+............+.+.
T Consensus 151 -~G~L~IAEV~S----------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F 195 (219)
T PF05148_consen 151 -GGILKIAEVKS----------------------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEF 195 (219)
T ss_dssp -EEEEEEEEEGG----------------------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEE
T ss_pred -CcEEEEEEecc----------------------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEE
Confidence 99999988532 1114678888999999999876544444444443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=89.00 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=77.1
Q ss_pred CCceEEEecCCccH--HHHHH--HHHCC----CCeEEEeec-hHHhhhccc-----------------------------
Q 018565 189 GIETLVDIGGNDGT--TLRTL--TKAFP----RIRGINFDL-PHVVCVAEK----------------------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~--~~~~l--~~~~p----~~~~~~~D~-~~~~~~a~~----------------------------- 230 (354)
+..+|.-.||++|. +++++ .+..+ ++++++.|+ +.+++.|+.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34899999999994 34433 33322 467999999 788777653
Q ss_pred --------CCCeEEeecCCCC-CCC---cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 231 --------CHGVEHVGGDMFD-GVP---EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 231 --------~~~v~~~~~d~~~-~~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+|+|...|..+ +++ +||+|+|.|++.+++++...+++++++++|+| ||.|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p-gG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP-DGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 1568899999998 443 49999999999999999999999999999999 9988773
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.3e-09 Score=89.10 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCceEEEecCCccH--HHHHHH-HH-----CC-CCeEEEeec-hHHhhhccc----------------------------
Q 018565 189 GIETLVDIGGNDGT--TLRTLT-KA-----FP-RIRGINFDL-PHVVCVAEK---------------------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~--~~~~l~-~~-----~p-~~~~~~~D~-~~~~~~a~~---------------------------- 230 (354)
+..+|.-+||++|. ++++++ .. .+ ..++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999994 333332 22 12 467899999 888887752
Q ss_pred ------CCCeEEeecCCCC-CC--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 231 ------CHGVEHVGGDMFD-GV--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 231 ------~~~v~~~~~d~~~-~~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+|+|...|..+ +. .+||+|+|.|||-+|+++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p-gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP-GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE-EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC-CCEEEEe
Confidence 3689999999999 32 249999999999999999999999999999999 9999884
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=87.73 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=73.3
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---Cc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---PE 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~~ 247 (354)
.++..+. ..+..+|||||||+|..+..+++.. .+++++|. +++++.+++ ..++++..+|..+.. .+
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3344444 5677899999999999998777764 37899998 888777654 346999999987743 35
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
||+|++...++++ .+.+.+.|+| ||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~-gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKE-GGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCC-CcEEEEEE
Confidence 9999998766543 3456789999 99988754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-09 Score=89.26 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=99.5
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEE-e---ecCCCC--CCCcc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEH-V---GGDMFD--GVPEA 248 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~-~---~~d~~~--~~~~~ 248 (354)
..+++...+ ..+..++||+|||||.++..+...- -+.+++|+ .+|++.+.+..-.+- . ..+|.. ....|
T Consensus 114 l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 344555555 4457999999999999998887653 35788999 899999876221111 1 113443 23459
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|....|+-++.. ...++..+...|+| ||.+.++-...+.... . . ...-... .-+..-...
T Consensus 190 DLi~AaDVl~YlG~--Le~~~~~aa~~L~~-gGlfaFSvE~l~~~~~-f------~-l~ps~Ry-------AH~~~YVr~ 251 (287)
T COG4976 190 DLIVAADVLPYLGA--LEGLFAGAAGLLAP-GGLFAFSVETLPDDGG-F------V-LGPSQRY-------AHSESYVRA 251 (287)
T ss_pred cchhhhhHHHhhcc--hhhHHHHHHHhcCC-CceEEEEecccCCCCC-e------e-cchhhhh-------ccchHHHHH
Confidence 99999999988764 45889999999999 9988886554444332 0 0 0000000 114666789
Q ss_pred HHHHcCCceeEEEEc
Q 018565 329 VLRQAGFSRYNITSI 343 (354)
Q Consensus 329 ll~~aGf~~~~~~~~ 343 (354)
+++..||+++++.++
T Consensus 252 ~l~~~Gl~~i~~~~t 266 (287)
T COG4976 252 LLAASGLEVIAIEDT 266 (287)
T ss_pred HHHhcCceEEEeecc
Confidence 999999999998776
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=92.05 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=70.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-CCcceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-VPEADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~~~~D~i~~~~~lh~ 259 (354)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++.+...+.... ..+||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999887764 4458999999 888887764 34566666664332 2359999986543
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+....++.++.+.||| ||.+++...
T Consensus 236 ---~~l~~ll~~~~~~Lkp-gG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKP-GGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCC-CcEEEEEeC
Confidence 2356889999999999 999988653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-08 Score=86.28 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=80.1
Q ss_pred CCceEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHhhhccc----------------------------
Q 018565 189 GIETLVDIGGNDGT----TLRTLTKAFP-----RIRGINFDL-PHVVCVAEK---------------------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 230 (354)
..-+|.-+||++|. ++..+.+..| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999993 3444556665 478899999 788877652
Q ss_pred -------CCCeEEeecCCCCC--CC-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 231 -------CHGVEHVGGDMFDG--VP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 231 -------~~~v~~~~~d~~~~--~~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...|.|..+|..++ .+ +||+|+|.|||-+|+.+.-.+++++++..|+| ||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~-gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP-GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC-CCEEEEc
Confidence 35789999999984 34 49999999999999999999999999999999 9999983
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=91.34 Aligned_cols=98 Identities=26% Similarity=0.257 Sum_probs=75.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCC--C--CCcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFD--G--VPEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~--~--~~~~D~i 251 (354)
+++.+||+||||.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3568999999999999999997655568999999 888887764 4689999999876 2 2359999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWVLHDWGDDE--CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~gG~lli~ 286 (354)
++...-+.-+... ..++++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~-gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE-DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEEe
Confidence 9865433222221 26789999999999 9987763
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=84.94 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=70.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC---------CC--cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------VP--EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~--~~D~i~~~ 254 (354)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4577899999999999999998876 56789999994332 235688888888752 22 49999985
Q ss_pred cccc---cCCh------HHHHHHHHHHHHhcCCCCceEEEE
Q 018565 255 WVLH---DWGD------DECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 255 ~~lh---~~~~------~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...| .|.. +....+++++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP-KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC-CCEEEEE
Confidence 4322 1111 1236889999999999 9998875
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=88.37 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCCCC-----CcceEEEecccccc-
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFDGV-----PEADAAIIKWVLHD- 259 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~~~-----~~~D~i~~~~~lh~- 259 (354)
..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ...+++..+|+++.. +.||+|+++-....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888888775 234688999988732 24999998643221
Q ss_pred -----CChH------------------HHHHHHHHHHHhcCCCCceEEEE
Q 018565 260 -----WGDD------------------ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 260 -----~~~~------------------~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+++ ...++++.+.+.|+| ||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEE
Confidence 1111 134788888999999 9988863
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-08 Score=90.12 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=74.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
..++.+|||.|||+|.++...+.. +.+++++|+ +.++..++. ...+++..+|+.+ +.+ .||+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456789999999999998886654 678999999 888876653 2348889999988 543 4999999633
Q ss_pred ccc-------CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHD-------WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~-------~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
... ...+...++|+.+.+.|+| ||++++.-
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~-gG~lv~~~ 294 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS-EGWIVYAV 294 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC-CcEEEEEE
Confidence 211 1123357899999999999 99998753
|
This family is found exclusively in the Archaea. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-07 Score=84.13 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=91.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----C-CCeEEeecCCCCCCC-cceEEEeccc--ccc--
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----C-HGVEHVGGDMFDGVP-EADAAIIKWV--LHD-- 259 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~v~~~~~d~~~~~~-~~D~i~~~~~--lh~-- 259 (354)
+|||+|||||..++.++.++|+.+++++|+ +..++.|+. . .++.++.+|.+++.. .||+|+++-. -..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888888765 2 566677779999755 5999998522 111
Q ss_pred -C-C-----------------hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCccc
Q 018565 260 -W-G-----------------DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKE 320 (354)
Q Consensus 260 -~-~-----------------~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~ 320 (354)
. + -+...+++..+.+.|+| ||.+++ |.-.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~-~g~l~l-e~g~------------------------------ 240 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP-GGVLIL-EIGL------------------------------ 240 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC-CcEEEE-EECC------------------------------
Confidence 0 0 12356788888888998 766654 2210
Q ss_pred CCHHHHHHHHHHcC-CceeEEEEcCC-ceeEEE
Q 018565 321 RSLKEWDYVLRQAG-FSRYNITSIHA-VQSLIE 351 (354)
Q Consensus 321 ~t~~e~~~ll~~aG-f~~~~~~~~~~-~~~~i~ 351 (354)
-..+...+++.+.| |..+.+..-.. ...++.
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~ 273 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLFGRDRVVL 273 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCCCceEEEE
Confidence 02567788999999 66666655433 333443
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=87.31 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=83.0
Q ss_pred CCceEEEecCCcc---HHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCC--eEEeecCCCCC---C--C---c-c-
Q 018565 189 GIETLVDIGGNDG---TTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHG--VEHVGGDMFDG---V--P---E-A- 248 (354)
Q Consensus 189 ~~~~vLDvG~G~G---~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~--v~~~~~d~~~~---~--~---~-~- 248 (354)
+..++||||||-= ..-.-..+..|+.+++.+|. |-++..++. .++ ..++.+|+.++ . | . .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 7789999999943 33333345689999999999 888887765 344 89999999984 1 1 1 2
Q ss_pred ----eEEEeccccccCCh-HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCH
Q 018565 249 ----DAAIIKWVLHDWGD-DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSL 323 (354)
Q Consensus 249 ----D~i~~~~~lh~~~~-~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~ 323 (354)
=.+++..+||+.+| ++...+++.++++|.| |+.|.|.....+.... . ............ .....||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap-GS~L~ish~t~d~~p~----~--~~~~~~~~~~~~-~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP-GSYLAISHATDDGAPE----R--AEALEAVYAQAG-SPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T-T-EEEEEEEB-TTSHH----H--HHHHHHHHHHCC-S----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC-CceEEEEecCCCCCHH----H--HHHHHHHHHcCC-CCceecCH
Confidence 36899999999987 6789999999999999 9999988776532211 0 112222222222 55688999
Q ss_pred HHHHHHHHHcCCceeE
Q 018565 324 KEWDYVLRQAGFSRYN 339 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~ 339 (354)
+|+.++|. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999996 787764
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=81.76 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=86.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-C
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTK-AFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-V 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~ 245 (354)
+..++.... ..++.+|+|.|.|+|.++..|++ -.|.-+++.+|. ++..+.|++ .+++++..+|+.+. .
T Consensus 83 ~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 83 AGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 345555666 88999999999999999999997 578889999999 888877765 56799999999983 3
Q ss_pred C-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 246 P-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 246 ~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
+ ++|+|++ ++|++. +++.++.++|+| ||.+.+.-++.
T Consensus 161 ~~~vDav~L-----Dmp~PW--~~le~~~~~Lkp-gg~~~~y~P~v 198 (256)
T COG2519 161 EEDVDAVFL-----DLPDPW--NVLEHVSDALKP-GGVVVVYSPTV 198 (256)
T ss_pred ccccCEEEE-----cCCChH--HHHHHHHHHhCC-CcEEEEEcCCH
Confidence 3 5999998 667765 789999999999 99998866544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.9e-08 Score=80.31 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=77.2
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC---c
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP---E 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~---~ 247 (354)
.++..+. .++..+|||||||+|..+.-|++.-. +++.++. ++..+.|++ ..+|.++.+|-...++ +
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 4455555 78889999999999999999988744 8888888 777777765 4569999999998543 5
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
||.|+.....-..|+. +.+-||| ||++++-..
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~~-gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLKP-GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhccc-CCEEEEEEc
Confidence 9999998877666642 4456899 999999654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-08 Score=88.75 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=70.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---CcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---PEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~~~D~i~~~~ 255 (354)
..+..+|||||||+|.++..+++..+. .+++++|. +++++.+++ .+++.++.+|..+.. .+||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 556789999999999999999998753 46899999 888877654 357899999987632 3599999876
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+++. ...+.+.|+| ||++++..
T Consensus 158 g~~~i--------p~~~~~~Lkp-gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLKE-GGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcCC-CCEEEEEe
Confidence 55443 2345678999 99988843
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.2e-08 Score=87.43 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=74.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------CCCeEEeecCCCC--C-C-Ccce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFD--G-V-PEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~--~-~-~~~D 249 (354)
.++.+||+||||.|..+..+++..+..+++.+|+ +++++.|+. .+|++++.+|..+ . . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4568999999999999988888655678999999 888888773 4799999999886 2 2 3499
Q ss_pred EEEeccccc---cCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 250 AAIIKWVLH---DWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 250 ~i~~~~~lh---~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+|++...-. ....-...++++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP-gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE-DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC-CcEEEEe
Confidence 999863211 01111235789999999999 9987764
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.7e-08 Score=80.10 Aligned_cols=88 Identities=15% Similarity=0.275 Sum_probs=64.2
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--ce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE--AD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~--~D 249 (354)
.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+. +|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 4455555 566789999999999999999987 568999999 778877764 3589999999998 5553 78
Q ss_pred EEEeccccccCChHHHHHHHH
Q 018565 250 AAIIKWVLHDWGDDECIKILK 270 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~ 270 (354)
.|+.+-.. +...+...++++
T Consensus 80 ~vi~n~Py-~~~~~~i~~~l~ 99 (169)
T smart00650 80 KVVGNLPY-NISTPILFKLLE 99 (169)
T ss_pred EEEECCCc-ccHHHHHHHHHh
Confidence 88765444 444443333333
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-08 Score=87.11 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=73.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CC--CcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GV--PEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~--~~~D~i 251 (354)
+++.+||+||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|... .. ..||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987533457899999 778887764 3689999999754 23 259999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhcCCCCceEEE
Q 018565 252 IIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 252 ~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli 285 (354)
++-..-+..+.. -...+++.+++.|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p-gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP-GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC-CcEEEE
Confidence 985433322211 135789999999999 998765
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=85.44 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=78.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHhhhccc------CCCeEE--eecCCCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF----PRIRGINFDL-PHVVCVAEK------CHGVEH--VGGDMFD 243 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~d~~~ 243 (354)
+.+...++ +...|+|+|||+|.-...|++.. ...+++.+|+ .+.++.+.. .+.+++ +.+||.+
T Consensus 68 ~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 45555444 55689999999998877766654 3467999999 556655432 345655 7788866
Q ss_pred C---CC------cceE-EEeccccccCChHHHHHHHHHHHH-hcCCCCceEEE-Eeee
Q 018565 244 G---VP------EADA-AIIKWVLHDWGDDECIKILKNCKE-AITKDKGKVII-VEAI 289 (354)
Q Consensus 244 ~---~~------~~D~-i~~~~~lh~~~~~~~~~~L~~~~~-~L~p~gG~lli-~e~~ 289 (354)
+ .+ ...+ +++.+.+.+++++++..+|+++++ .|+| |+.++| +|..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~-~d~lLiG~D~~ 200 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP-SDSFLIGLDGC 200 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC-CCEEEEecCCC
Confidence 2 11 2445 466689999999999999999999 9999 998888 3543
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-08 Score=83.24 Aligned_cols=100 Identities=20% Similarity=0.286 Sum_probs=73.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-- 246 (354)
..+++.+. +.++.+|||||||+|..+.-+++.. +..+++.+|. +...+.+++ ..+|+++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 44556666 7889999999999999999998864 4456889998 888887765 4689999999887433
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+||.|++.......|. .+.+.|++ ||+|++.-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~-gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP-GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE-EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC-CcEEEEEE
Confidence 5999999887765443 24556899 99998843
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=92.51 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=74.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-------------CCCeEEeecCCCC---CC-Ccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFD---GV-PEA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~---~~-~~~ 248 (354)
+++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.+++ .+|++++.+|..+ .. ..|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3568999999999999999987 455 79999999 999988765 2689999999876 22 359
Q ss_pred eEEEeccccccCChH---HHHHHHHHHHHhcCCCCceEEEE
Q 018565 249 DAAIIKWVLHDWGDD---ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 249 D~i~~~~~lh~~~~~---~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
|+|++...-...+.. ...++++++++.||| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p-gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP-DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC-CeEEEEe
Confidence 999997433221111 124689999999999 9988764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.9e-08 Score=86.23 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=74.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C-CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G-VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~~~~D~i~~ 253 (354)
++.+||+||||+|..+..+++..+..+++++|+ +++++.+++ .++++++.+|..+ . ...||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999999999988766678999999 888777664 3678888888765 1 235999998
Q ss_pred ccccccCChHH--HHHHHHHHHHhcCCCCceEEEE
Q 018565 254 KWVLHDWGDDE--CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 254 ~~~lh~~~~~~--~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...-..-+... ..++++.+++.|+| ||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~p-gG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNE-DGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCC-CcEEEEc
Confidence 76533222222 46889999999999 9988875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-07 Score=76.77 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=100.9
Q ss_pred hhHHHhhChHHHHHHHHHhhhchh----hhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHh
Q 018565 150 VWSYAAADAAHSKLINDAMACDTR----LAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVV 225 (354)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 225 (354)
.++.+.++|.....|+...+.... --...+++.+. ..+....|-|+|||.+.++.. ....+.-+|+-.
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a-- 209 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA-- 209 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec--
Confidence 345556677666666655443221 22455666555 135678999999999998761 234577788731
Q ss_pred hhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhh
Q 018565 226 CVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKS 302 (354)
Q Consensus 226 ~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~ 302 (354)
.+-+++..|+.+ |.+ +.|++++|-.|-- .....++++++++|+| ||.++|.|...
T Consensus 210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~-gG~l~IAEv~S------------ 267 (325)
T KOG3045|consen 210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP-GGLLYIAEVKS------------ 267 (325)
T ss_pred ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc-CceEEEEehhh------------
Confidence 334467788888 655 4898877765542 3467899999999999 99999987531
Q ss_pred hhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcCCceeEEE
Q 018565 303 VRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIE 351 (354)
Q Consensus 303 ~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~ 351 (354)
+.-+...+.+.+...||.+....-....+.+.+
T Consensus 268 ----------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfe 300 (325)
T KOG3045|consen 268 ----------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFE 300 (325)
T ss_pred ----------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEE
Confidence 111344577888888988876544433333333
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=81.96 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=75.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---------CCcc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---------VPEA 248 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---------~~~~ 248 (354)
..+..+|||||||+|..+..+++..| +.+++.+|. ++.++.+++ .++++++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999998754 679999999 888887764 47899999999762 1359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|+|++-. +.+....++..+.+.|+| ||.+++-+.
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~-GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKV-GGIIAFDNT 179 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC-CeEEEEEcC
Confidence 9998843 234556889999999999 886655443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-07 Score=88.05 Aligned_cols=108 Identities=11% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC---C--Cc
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG---V--PE 247 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~---~--~~ 247 (354)
+...++ ..++.+|||+|||+|..+..+++..++.+++++|. ++++..+++ ..+++++.+|..+. . .+
T Consensus 236 ~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 333444 45678999999999999999999988789999999 888877764 33578899998762 1 24
Q ss_pred ceEEEeccc------cc-------cCChHH-------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 248 ADAAIIKWV------LH-------DWGDDE-------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 248 ~D~i~~~~~------lh-------~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
||.|++.-. +. ....++ -.++|+++.+.||| ||+++++...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp-GG~lvystcs 374 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP-GGTLLYATCS 374 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence 999985321 11 111221 24789999999999 9999987743
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-07 Score=95.19 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=88.8
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------------CCCeEEeecCCCCCCC
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------------CHGVEHVGGDMFDGVP 246 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~v~~~~~d~~~~~~ 246 (354)
+.+|||+|||+|..+..+++++|..+++++|+ +.+++.++. .+|++++.+|++++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888877643 1479999999998543
Q ss_pred ----cceEEEeccc--ccc----CC--------------------------hH----HHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 ----EADAAIIKWV--LHD----WG--------------------------DD----ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ----~~D~i~~~~~--lh~----~~--------------------------~~----~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.||+|+++-. ... ++ ++ -..+++..+.+.|+| ||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p-gG~l~l- 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP-MGIMIF- 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC-CCEEEE-
Confidence 4999988532 110 00 01 125677778888888 886654
Q ss_pred eeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH-HHHHHcCCceeEEEEcC
Q 018565 287 EAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD-YVLRQAGFSRYNITSIH 344 (354)
Q Consensus 287 e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~-~ll~~aGf~~~~~~~~~ 344 (354)
|.-. ...+.+. +++++.||+.+++|...
T Consensus 277 EiG~------------------------------~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 277 NMGG------------------------------RPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred EECc------------------------------cHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 3210 0134566 58888999998888764
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-07 Score=78.19 Aligned_cols=146 Identities=17% Similarity=0.203 Sum_probs=91.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCC-CcceEEEeccccccCChHHHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGV-PEADAAIIKWVLHDWGDDECI 266 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~-~~~D~i~~~~~lh~~~~~~~~ 266 (354)
...++||||+|.|..+..++..+.+ +.+.+. +.|..+.++ ..++++..+-.... ..||+|.|.|+|-.-.++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999988775 555666 777777764 44555543323322 359999999999664444 5
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-HhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 267 KILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-VMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 267 ~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
.+|+.++++|+| +|++++.= ++|-...|+. .. .....- ..+...+..-+-..+.+.+.|+.+||++.++..+|
T Consensus 169 ~LL~~i~~~l~p-~G~lilAv-VlP~~pyVE~--~~-g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKP-NGRLILAV-VLPFRPYVEF--GG-GKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCC-CCEEEEEE-EecccccEEc--CC-CCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 899999999999 99888743 2221110000 00 000000 00111011111124455588999999999998876
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-07 Score=80.53 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=71.6
Q ss_pred CceEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC-cceEEEeccccccCCh
Q 018565 190 IETLVDIGGNDGTTLRTLTKAF---PRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDWGD 262 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~~~ 262 (354)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++++..+|+.. +.. .||+|+++-..+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998874 4678999999 888888876 4678999999987 443 5999999766653221
Q ss_pred ----------HHHHHHHHHHHHhcCCCCceEE
Q 018565 263 ----------DECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 263 ----------~~~~~~L~~~~~~L~p~gG~ll 284 (354)
.-...+++++.++++| | .++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~-G-~~I 159 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ-G-TFI 159 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC-C-EEE
Confidence 1245688899987776 4 453
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=79.57 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=69.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C--CC--cceEEEecccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G--VP--EADAAIIKWVL 257 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~--~~--~~D~i~~~~~l 257 (354)
..+||||||.|.++..+++.+|+..++|+|+ ...+..+.. ..++.++.+|... + ++ +.|-|++...=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 4899999999999999999999999999999 555554432 6899999999877 1 23 36666553321
Q ss_pred ccCChH-------HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 258 HDWGDD-------ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 258 h~~~~~-------~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
-|+.. -...+|+.+.+.|+| ||.|.+...
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~-gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKP-GGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEE-EEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCC-CCEEEEEeC
Confidence 12221 135789999999999 999988653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-07 Score=79.42 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=77.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTK-AFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV- 245 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~- 245 (354)
..++..++ ..++.+|||.|.|+|.++..|++ -.|.-++.-+|. ++..+.|++ .++|++...|+.+ .+
T Consensus 30 ~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 44556666 88999999999999999999997 468889999999 777777765 5789999999975 33
Q ss_pred ----CcceEEEeccccccCChHHHHHHHHHHHHhc-CCCCceEEEEeee
Q 018565 246 ----PEADAAIIKWVLHDWGDDECIKILKNCKEAI-TKDKGKVIIVEAI 289 (354)
Q Consensus 246 ----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L-~p~gG~lli~e~~ 289 (354)
..+|.|++ ++|++. ..+..+.++| +| ||++.+.-++
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~-gG~i~~fsP~ 148 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP-GGRICCFSPC 148 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE-EEEEEEEESS
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC-CceEEEECCC
Confidence 24899988 667665 6788999999 89 9999886543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=79.82 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=67.4
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeec--CCCC-C----C--C-cceEEEeccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGG--DMFD-G----V--P-EADAAIIKWVLH 258 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~--d~~~-~----~--~-~~D~i~~~~~lh 258 (354)
...++|||||+|..+..++..+. ++++.|. +.|+..+++..++++... .+.+ + . + +.|+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 34899999999977777777654 6899999 999999988555554332 2222 1 1 2 489999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-|+-+ ++++.++++||++||.+.+
T Consensus 112 WFdle---~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 112 WFDLE---RFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhchH---HHHHHHHHHcCCCCCEEEE
Confidence 87754 7899999999983445544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=79.76 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=70.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCC--eEEeecCCCC--CCCc--ceEEEeccccc---
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHG--VEHVGGDMFD--GVPE--ADAAIIKWVLH--- 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--v~~~~~d~~~--~~~~--~D~i~~~~~lh--- 258 (354)
.+.-|||||||+|..+..+... +...+++|+ |.|++.+.+ .. -.++.+|+-+ |+++ ||.++....+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3789999999999988887764 678999999 999999875 22 3467778877 4433 99877654442
Q ss_pred ------cCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 259 ------DWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 259 ------~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
|.|......++..++.+|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r-g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR-GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc-CceeEE
Confidence 23455667788899999999 888776
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-08 Score=63.90 Aligned_cols=46 Identities=46% Similarity=0.923 Sum_probs=38.8
Q ss_pred HHHHHHHHcChhhhhhhCC-CCCCHHHHHhHcC-CC---cccHHHHHHHHh
Q 018565 32 AVVKCAVELGIAEAVEEKG-SPITLNELASALK-CD---PSLLQRIMRFLI 77 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~-~~~t~~elA~~~g-~~---~~~l~~lL~~L~ 77 (354)
.+|++|+||||||.|.+.| ++.|+.||+++++ .+ +..+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 3799999999999999875 7999999999999 44 458899999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-07 Score=84.53 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------CCCeEEeecCCCCC-------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGGDMFDG------- 244 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~d~~~~------- 244 (354)
+..+|||+|||-|.-+....... --.++++|+ +..++.|++ .-...++.+|.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999999888777753 346899999 666666543 12456677877752
Q ss_pred CC--cceEEEeccccccC--ChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 245 VP--EADAAIIKWVLHDW--GDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 245 ~~--~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+ .||+|-|...+|+. +.+.+..+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~-GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP-GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 12 49999999999984 566788899999999999 99888754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-07 Score=86.81 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=75.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC---CC-cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG---VP-EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~---~~-~~D~i~~~ 254 (354)
..++.+|||+|||+|..+..+++.. +..+++++|+ +++++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999999876 6779999999 887776654 24599999998762 33 59999874
Q ss_pred ccc------cc-------CChHH-------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 255 WVL------HD-------WGDDE-------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 255 ~~l------h~-------~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-.. .+ ++... ...+|+++.+.||| ||+++.....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK-GGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEcCC
Confidence 321 11 11111 24689999999999 9999876543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.7e-07 Score=86.49 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=76.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CC-CcceEEEec--
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GV-PEADAAIIK-- 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-~~~D~i~~~-- 254 (354)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +++++.+++ ..+|+++.+|..+ +. ..||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44668999999999999998888653 458999999 888877764 2468999999877 32 249999862
Q ss_pred ----ccc-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 255 ----WVL-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 255 ----~~l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
.++ +.++.+.. .++|+++.+.||| ||+++...-...
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP-GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCC
Confidence 111 12233222 3689999999999 999999775443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-07 Score=76.17 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=68.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCCCC------C-cceE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFDGV------P-EADA 250 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~------~-~~D~ 250 (354)
...+.+|||+|||+|..+..+++..+..+++..|.+++++..+. ..++++...|..++. + +||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34678999999999999999988877788999999656665442 467888888876621 2 4999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
|+.+.++++ ++....+++.+.+.|+| +|.+++.-..+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~-~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP-NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT--TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC-CCEEEEEeCEe
Confidence 999999996 67788999999999999 88877766554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-07 Score=86.19 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=76.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CC--CeEEeecCCCC-CC----CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CH--GVEHVGGDMFD-GV----PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~--~v~~~~~d~~~-~~----~~~D~i~~ 253 (354)
..++.+|||+|||+|..+..+++..+..+++++|. ++++..+++ .- ++.+..+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45678999999999999999999888779999999 888777654 21 23446677654 22 24999986
Q ss_pred c------cccccCCh-------HH-------HHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 254 K------WVLHDWGD-------DE-------CIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 254 ~------~~lh~~~~-------~~-------~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
. .+++..|+ ++ -.++|+++.+.||| ||+|++++....
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp-gG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT-GGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCCC
Confidence 2 34554333 11 25799999999999 999999876554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-06 Score=72.78 Aligned_cols=123 Identities=13% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC-CCC-----cceEEEeccccccCCh
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-GVP-----EADAAIIKWVLHDWGD 262 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~-----~~D~i~~~~~lh~~~~ 262 (354)
...++|||||=+...... .++-..++.+|+.. ..-.+...||++ |.| .||+|.++-||.+.|+
T Consensus 51 ~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS---TSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred ccceEEeecccCCCCccc---ccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 347999999876554332 35566789999832 122346678888 765 3999999999999985
Q ss_pred H-HHHHHHHHHHHhcCCCCce-----EEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 263 D-ECIKILKNCKEAITKDKGK-----VIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 263 ~-~~~~~L~~~~~~L~p~gG~-----lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
+ +..+.++++++.|+| +|. |+|+-+.. +..|.+-.+.+.|..+++..||.
T Consensus 120 p~~RG~Ml~r~~~fL~~-~g~~~~~~LFlVlP~~-----------------------Cv~NSRy~~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKP-PGLSLFPSLFLVLPLP-----------------------CVTNSRYMTEERLREIMESLGFT 175 (219)
T ss_pred HHHHHHHHHHHHHHhCC-CCccCcceEEEEeCch-----------------------HhhcccccCHHHHHHHHHhCCcE
Confidence 4 788999999999999 898 77753211 11466777899999999999999
Q ss_pred eeEEEEcCCc
Q 018565 337 RYNITSIHAV 346 (354)
Q Consensus 337 ~~~~~~~~~~ 346 (354)
.++....+..
T Consensus 176 ~~~~~~~~Kl 185 (219)
T PF11968_consen 176 RVKYKKSKKL 185 (219)
T ss_pred EEEEEecCeE
Confidence 9988776553
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1e-06 Score=80.20 Aligned_cols=144 Identities=17% Similarity=0.215 Sum_probs=90.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEee----cCCCCCC----CcceEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVG----GDMFDGV----PEADAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~----~d~~~~~----~~~D~i 251 (354)
...++||||||+|.....++.+.++++++++|+ +..++.|+. .++|++.. .+++... ..||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999999998888888889999999999 888887764 24677754 2334321 249999
Q ss_pred EeccccccCChHH---HHHHHHHHH----------------HhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh
Q 018565 252 IIKWVLHDWGDDE---CIKILKNCK----------------EAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM 312 (354)
Q Consensus 252 ~~~~~lh~~~~~~---~~~~L~~~~----------------~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~ 312 (354)
+|+=.+|.-..+. ...-.+++. +++.+ ||.+-++..+..+... ...-..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~-GGe~~fi~~mi~eS~~----------~~~~~gw 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE-GGEVAFIKRMIEESKA----------FAKQVLW 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC-CcEeeeehHhhHHHHH----------HHhhCcE
Confidence 9998887633321 112223322 22334 5554443333222110 0000011
Q ss_pred cccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 313 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
..+.-|+.-+...+.+.|++.|.+.++++.+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1112346668999999999999988888887
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.7e-07 Score=84.61 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=77.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C----C--CcceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G----V--PEADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~----~--~~~D~i 251 (354)
..++.+|||+|||+|..+..+++... ..+++++|+ +++++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45678999999999999999998753 468999999 888877654 3568999999876 3 1 249999
Q ss_pred Eec------cccccCCh-------HH-------HHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 252 IIK------WVLHDWGD-------DE-------CIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 252 ~~~------~~lh~~~~-------~~-------~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
++. .+++..++ +. -.++|+++.+.||| ||+|+.++-..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp-gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP-GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 973 24443332 11 25889999999999 99998876443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.2e-07 Score=76.47 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=64.8
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------CCCeEEeecCC
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------CHGVEHVGGDM 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d~ 241 (354)
.+++.+. +.+...++|+|||.|......+..++.-+++|+++ +.....++. ..++++..+||
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4445555 66788999999999999888887766556999998 655444321 46788999999
Q ss_pred CC-C-----CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 242 FD-G-----VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 242 ~~-~-----~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
.+ + +.++|+|++++.+. +++ ...-|.+....||| |.+++-.....+
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F--~~~-l~~~L~~~~~~lk~-G~~IIs~~~~~~ 162 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF--DPD-LNLALAELLLELKP-GARIISTKPFCP 162 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT---HH-HHHHHHHHHTTS-T-T-EEEESS-SS-
T ss_pred cccHhHhhhhcCCCEEEEecccc--CHH-HHHHHHHHHhcCCC-CCEEEECCCcCC
Confidence 98 3 23589999999864 454 44556777788998 776655444433
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=77.78 Aligned_cols=103 Identities=15% Similarity=0.220 Sum_probs=75.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~~~D~i~~~~ 255 (354)
..++.+|||+|||+|..+..+++... ...++++|+ +..++.+++ ..++++...|... + .+.||.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999988764 358999999 888776654 3568888888765 2 34599998732
Q ss_pred c------cc-------cCChHHH-------HHHHHHHHHhcCCCCceEEEEeeee
Q 018565 256 V------LH-------DWGDDEC-------IKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 256 ~------lh-------~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
. +. .|.++.. .++|+++.+.||| ||+|+.+.-..
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp-gG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP-GGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 1 11 1233222 4699999999999 99998765443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=82.86 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=68.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC-----
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG----- 244 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----- 244 (354)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++ .+++++..+|+.+.
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 33444444 4566899999999999999999875 58999999 888888764 35799999998652
Q ss_pred C--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 245 V--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 245 ~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+ ..||+|++.-. -....++++.+.+ ++| ++.++++
T Consensus 363 ~~~~~fD~Vi~dPP-----r~g~~~~~~~l~~-~~~-~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPP-----RAGAAEVMQALAK-LGP-KRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcC-----CcChHHHHHHHHh-cCC-CeEEEEE
Confidence 2 24899987322 1112345555555 577 6666663
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.5e-06 Score=74.30 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=76.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C------Ccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V------PEA 248 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~------~~~ 248 (354)
..+..+|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.||..+ + . ++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45679999999999999999998765 567899998 777777764 5799999999876 1 1 359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
|+|++-. +.......+..+.+.|+| ||.+++ |.++
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~-GGvIV~-DNvL 230 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV-GGVIVM-DNVL 230 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC-CcEEEE-ecCc
Confidence 9999843 355678889999999999 876555 4443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=82.34 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=75.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C-C--CcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G-V--PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~--~~~D~i~~~ 254 (354)
..++.+|||+|||+|..+..+++.. +..+++++|+ ++.++.+++ ..++++..+|..+ + . ..||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999875 4678999999 888877764 2468899999876 3 1 249999872
Q ss_pred cc------ccc-------CChHH-------HHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WV------LHD-------WGDDE-------CIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~------lh~-------~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
-. +.. ++.+. -.++|.++.+.||| ||.|+.+.-..
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK-GGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCC
Confidence 21 211 12111 15779999999999 99987766544
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=77.34 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=63.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCcceE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPEADA 250 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D~ 250 (354)
+.+++.+. ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 44555555 556789999999999999999998 357999999 788877764 3689999999998 7777898
Q ss_pred EEeccccccCChH
Q 018565 251 AIIKWVLHDWGDD 263 (354)
Q Consensus 251 i~~~~~lh~~~~~ 263 (354)
|+++-. ++.+.+
T Consensus 95 Vv~NlP-y~i~s~ 106 (258)
T PRK14896 95 VVSNLP-YQISSP 106 (258)
T ss_pred EEEcCC-cccCcH
Confidence 877544 444433
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.4e-07 Score=76.50 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-------CCcce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-------VPEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-------~~~~D 249 (354)
.++.+||+||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4678999999999999999999876 589999999 878777765 5799999999875 1 13599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+|++-. +.......+..+.+.|+| ||.+ |+|.+
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~-ggvi-i~DN~ 156 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRP-GGVI-IADNV 156 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEE-EEEE-EEETT
T ss_pred EEEEcc-----cccchhhHHHHHhhhccC-CeEE-EEccc
Confidence 999954 355667889999999999 6655 44443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=77.04 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=61.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCcce-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPEAD- 249 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~~D- 249 (354)
..+++.++ ..+..+|||||||+|.++..++++.+ +++++|. +.+++.++. ..+++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 45555555 56778999999999999999999876 4888888 777777664 3789999999998 555566
Q ss_pred -EEEeccccccCChH
Q 018565 250 -AAIIKWVLHDWGDD 263 (354)
Q Consensus 250 -~i~~~~~lh~~~~~ 263 (354)
.++++|.-++++.+
T Consensus 95 ~~~vvsNlPy~i~~~ 109 (253)
T TIGR00755 95 QLKVVSNLPYNISSP 109 (253)
T ss_pred cceEEEcCChhhHHH
Confidence 34445555554443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=78.57 Aligned_cols=82 Identities=10% Similarity=0.140 Sum_probs=61.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCCcc--e
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVPEA--D 249 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~~~--D 249 (354)
..+++.+. ..++.+|||||||+|.++..++++.+ +++++|+ +.+++.+++ .++++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34455555 56678999999999999999999865 8899999 888888765 3689999999998 55543 5
Q ss_pred EEEeccccccCChH
Q 018565 250 AAIIKWVLHDWGDD 263 (354)
Q Consensus 250 ~i~~~~~lh~~~~~ 263 (354)
.|+. |.-++.+.+
T Consensus 108 ~vv~-NlPY~iss~ 120 (272)
T PRK00274 108 KVVA-NLPYNITTP 120 (272)
T ss_pred eEEE-eCCccchHH
Confidence 5554 444544433
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-06 Score=66.96 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=91.0
Q ss_pred hhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-C-----
Q 018565 174 LAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-G----- 244 (354)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~----- 244 (354)
..++.+...++ ...+.-|||+|.|+|.++.+++++ .+.-..+.++. ++......+ .+.+.++.||.++ .
T Consensus 35 ~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 35 ILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 34556666666 667789999999999999999886 35556788887 777777665 6777799999887 3
Q ss_pred C--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 245 V--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 245 ~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
. +.||.|++.-.+-++|.....++|..+...|++ ||.++-....
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~-gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA-GGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC-CCeEEEEEec
Confidence 2 239999999999999999999999999999999 9988876543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=73.51 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=79.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEee-cCCCC--C---CCcceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVG-GDMFD--G---VPEADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~-~d~~~--~---~~~~D~i 251 (354)
..+.++||+||.+.|.-+..++...| +.+.+.+|. ++..+.|++ .++|++.. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 55789999999999999999999999 888999999 888888875 57788888 57766 2 3469999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
++-. ....-.+.|..+.+.|+| || |+++|.++..
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~-GG-liv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP-GG-LIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC-Cc-EEEEeecccC
Confidence 9843 455667899999999999 66 5555655544
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.4e-06 Score=74.24 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=74.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCCc-ceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVPE-ADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~-~D~i~~~~~lh~ 259 (354)
..+.|||||||+|.++...+++. .-++..++..+|.+.|+. .+||.++.|.+.+ +.|+ .|+|+.--.-..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 35789999999999998887764 346788888888888775 6899999999999 7775 999988655444
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+-.+...+-.-.+++.||| .|+++=
T Consensus 256 L~NERMLEsYl~Ark~l~P-~GkMfP 280 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP-NGKMFP 280 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC-CCcccC
Confidence 4456666666678899999 898763
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.1e-07 Score=73.89 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred hcCCCccCCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHhhhccc----------------CCCeEEeecCC
Q 018565 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKA--FPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGGDM 241 (354)
Q Consensus 181 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~d~ 241 (354)
+.++..+.++.+.||||+|+|.++..+++- .++...+++|. |+.++..++ ..++.++.||-
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 333334678899999999999999888753 24444488998 888876553 46788899999
Q ss_pred CCC---CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 242 FDG---VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 242 ~~~---~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
..- ..+||.|.+... +.++.+++..-|+| ||+++|
T Consensus 154 r~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~-gGrlli 191 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP-GGRLLI 191 (237)
T ss_pred cccCCccCCcceEEEccC--------ccccHHHHHHhhcc-CCeEEE
Confidence 883 346999998643 33566677778899 999998
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=80.88 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=81.7
Q ss_pred ChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC----CCCeEEEeec-hH
Q 018565 149 DVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF----PRIRGINFDL-PH 223 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 223 (354)
..|+.+++++..-..|.+|+... + ....+.-. .......|+|||||+|-++...+++. ...++.+++- +.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~a---l-~D~~~~~~-~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEA---L-KDRVRKNS-YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHH---H-HHHHTTS--SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHH---H-Hhhhhhcc-ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 45788888888877777776431 1 11111111 01135789999999999987776643 3568899987 44
Q ss_pred Hhhhc----cc---CCCeEEeecCCCC-CCC-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEE
Q 018565 224 VVCVA----EK---CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 224 ~~~~a----~~---~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~ll 284 (354)
+.... +. .++|+++.+|+.+ ..| .+|+|+.-..=.....+-..+.|....+.||| ||.++
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp-~Gi~I 294 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP-DGIMI 294 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE-EEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC-CCEEe
Confidence 43322 11 6899999999999 555 59999876554333345566788899999999 76443
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=74.23 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=70.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CC-CeEEeecCCCC--C--CC--cceEEEecccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CH-GVEHVGGDMFD--G--VP--EADAAIIKWVL 257 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~v~~~~~d~~~--~--~~--~~D~i~~~~~l 257 (354)
..+||||||.|.++..+++++|+..++|+++ ...+..+.. .- ++.++++|... + ++ +-|-|+++..=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999999 444444322 34 89999998876 2 22 35666553321
Q ss_pred ccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
-|+... -..+|+.+.+.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~-gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP-GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC-CCEEEEEe
Confidence 133221 24789999999999 99998854
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.8e-06 Score=64.57 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=69.9
Q ss_pred HHHhcCCCccCCCceEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCC----cceEE
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGT-TLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVP----EADAA 251 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~----~~D~i 251 (354)
.+.+.+. .....++||||||+|. .+..|.+. +..++++|+ +..++.+++ ..++++.+|++++-. ++|+|
T Consensus 7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEE
Confidence 3444444 2345789999999996 77777764 679999999 888887764 457899999999633 58999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
...+ |+.+...-+.++.+... .-++|...
T Consensus 82 ysir-----pp~el~~~~~~la~~~~---~~~~i~~l 110 (134)
T PRK04148 82 YSIR-----PPRDLQPFILELAKKIN---VPLIIKPL 110 (134)
T ss_pred EEeC-----CCHHHHHHHHHHHHHcC---CCEEEEcC
Confidence 9876 35556666666766553 45666443
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.7e-06 Score=76.58 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC--C-C-CcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD--G-V-PEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~-~-~~~D~i~~ 253 (354)
++.+||.||||.|..+..+++..+..+++.+|+ +++++.+++ .+|++++.+|... . . ..||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 568999999999999999998666678999999 899888874 4789999998877 2 2 25999998
Q ss_pred ccccccCC--hH---HHHHHHH-HHHHhcCCCCceEEE
Q 018565 254 KWVLHDWG--DD---ECIKILK-NCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~lh~~~--~~---~~~~~L~-~~~~~L~p~gG~lli 285 (354)
-.. ..+. .. --.++++ .+++.|+| ||.+++
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p-~Gvlv~ 218 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNP-GGIFVT 218 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCC-CcEEEE
Confidence 631 1110 00 1246787 88999999 987665
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-06 Score=75.11 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=66.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPE 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~ 247 (354)
..+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 44555555 5677899999999999999999874 46899998 788877654 3689999999998 6677
Q ss_pred ceEEEeccccccCChHHHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L 269 (354)
+|+|++ +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 897765 555666666555555
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=5e-06 Score=73.64 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=72.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHhhhccc--------CC----CeEEeecCCCCC-----C----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLP-HVVCVAEK--------CH----GVEHVGGDMFDG-----V---- 245 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~--------~~----~v~~~~~d~~~~-----~---- 245 (354)
++...++|+|||-|.-++..-++. --.++++|++ -.+..++. .. .+.|..+|.+.. +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 466789999999999888776652 2368999994 44555553 11 367888888762 2
Q ss_pred CcceEEEecccccc-C-ChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 246 PEADAAIIKWVLHD-W-GDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 246 ~~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
|.||+|-|..++|+ | +.+.+..+|+++.+.|+| ||.++-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp-GG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP-GGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC-CcEEEE
Confidence 23999999999998 3 466789999999999999 887664
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.3e-06 Score=70.56 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=65.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---C-cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---P-EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~-~~D~i~~~~~l 257 (354)
...+|||+|||+|.++..++.+.. .+++++|. ++.++.+++ ..+++++.+|+++.. . +||+|++.-..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666543 58999998 777776654 357999999987622 2 49999987653
Q ss_pred ccCChHHHHHHHHHHHH--hcCCCCceEEEEeee
Q 018565 258 HDWGDDECIKILKNCKE--AITKDKGKVIIVEAI 289 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~--~L~p~gG~lli~e~~ 289 (354)
+. .....+++.+.+ .|+| ++ ++++|..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~-~~-iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD-EA-LIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC-Cc-EEEEEec
Confidence 32 223344555544 3788 66 4555543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=71.77 Aligned_cols=96 Identities=25% Similarity=0.337 Sum_probs=77.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CCC-cceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GVP-EADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~~-~~D~i~~ 253 (354)
+.++||-||+|.|.++.++++..+--+++.+|+ +.+++.+++ .+|++++.+|-.+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 347999999999999999999988889999999 999998875 4899999999877 344 4999998
Q ss_pred ccccccCChH---HHHHHHHHHHHhcCCCCceEEEE
Q 018565 254 KWVLHDWGDD---ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 254 ~~~lh~~~~~---~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
-..=.. .+. --..+++.++++|+| +|.++..
T Consensus 156 D~tdp~-gp~~~Lft~eFy~~~~~~L~~-~Gi~v~q 189 (282)
T COG0421 156 DSTDPV-GPAEALFTEEFYEGCRRALKE-DGIFVAQ 189 (282)
T ss_pred cCCCCC-CcccccCCHHHHHHHHHhcCC-CcEEEEe
Confidence 654321 110 125899999999999 8877765
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=72.84 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=69.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CC--CcceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GV--PEADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~--~~~D~i~~~~~lh 258 (354)
..+.|||||||+|.++...+++. ..++.++|-.++++.+.+ .+.|+++.|.+.+ .. +..|+|+.-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 56899999999999999999986 457899998777776664 5679999998887 44 4599998866544
Q ss_pred cCC-hHHHHHHHHHHHHhcCCCCceEE
Q 018565 259 DWG-DDECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 259 ~~~-~~~~~~~L~~~~~~L~p~gG~ll 284 (354)
.+- +.-...+|-.=-+.|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~-~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE-GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC-CceEc
Confidence 322 33333444444478999 88664
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=70.99 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=75.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--CC--------Cc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--GV--------PE 247 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~~--------~~ 247 (354)
..+..+||+||+++|..+..+++.. ++.+++.+|. ++....|++ .++|+++.||..+ +. ++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3457899999999999999999876 4678999998 777777664 5899999998876 21 35
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
||+|++-. ........+..+.+.|+| ||. +|+|.++
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~-GGv-iv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV-GGV-IGYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC-CeE-EEEcCCC
Confidence 99999853 345567888888999999 765 5555443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=66.37 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=57.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCCcceEEEeccccccC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVPEADAAIIKWVLHDW 260 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~ 260 (354)
.+.+|+|+|||+|.+++..+-..| .+++++|+ ++.++.+++ ..+++|+..|+.+-...+|.++++-.+-.+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 567899999999999998777654 47899999 999988876 568999999998866678888876655443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=70.01 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=69.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCCC-CCcceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFDG-VPEADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~-~~~~D~i~~~~ 255 (354)
+++.+||=||||.|..+.++++. |. +++.+|+ +++++.+++ .+|++++.. +.+. ...||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999996 54 9999999 888887775 688888862 3222 24699999864
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
. ++ ..+.+.++++|+| ||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~-~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE-DGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCC-CcEEEEC
Confidence 3 12 3678999999999 9877763
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.9e-05 Score=74.48 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=69.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------C-CCeEEeecCCCCC---C----CcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------C-HGVEHVGGDMFDG---V----PEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~~---~----~~~D~i~ 252 (354)
.+.+|||+|||+|.++...+.. ...+++.+|+ +.+++.+++ . ++++++.+|+++. . ..||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 3458999999 888887764 1 4789999999872 1 2499999
Q ss_pred eccccccCCh-------HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 IKWVLHDWGD-------DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 ~~~~lh~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-.-..-+. .....+++.+.+.|+| ||.++.+.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~-gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNP-GGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC-CeEEEEEe
Confidence 8643211111 1234566678899999 99888644
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.6e-06 Score=73.91 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=59.8
Q ss_pred EeecCCCC--CC------Cc-ceEEEeccccccC--ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhh
Q 018565 236 HVGGDMFD--GV------PE-ADAAIIKWVLHDW--GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVR 304 (354)
Q Consensus 236 ~~~~d~~~--~~------~~-~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~ 304 (354)
++..|..+ |. |+ ||++++..+|... +.+.-.+.++++.++||| ||.|++....-.....
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp-GG~Lil~~~l~~t~Y~--------- 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP-GGHLILAGVLGSTYYM--------- 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE-EEEEEEEEESS-SEEE---------
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC-CcEEEEEEEcCceeEE---------
Confidence 56678877 22 33 9999999988764 345678999999999999 9999998764322111
Q ss_pred hhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEE
Q 018565 305 LMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 305 ~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 342 (354)
..-.. ...-..+.+.+.+.++++||.+.+...
T Consensus 208 --vG~~~----F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 --VGGHK----FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --ETTEE----EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred --ECCEe----cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 111234789999999999999988774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=81.14 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=71.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------C-CCeEEeecCCCCC---C-CcceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------C-HGVEHVGGDMFDG---V-PEADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~~---~-~~~D~i~~~~ 255 (354)
.+.+|||+|||+|.++..+++. ...+++++|+ +.+++.+++ . .+++++.+|+++. . ..||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999999985 3346999999 888887765 2 5799999998762 2 3599999842
Q ss_pred cccc--------C-ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 256 VLHD--------W-GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 256 ~lh~--------~-~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.-.. + .......+++.+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~-gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP-GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC-CCEEEEE
Confidence 2110 0 012346788899999999 9987663
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=71.16 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=74.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C-CC-cceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G-VP-EADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~~-~~D~i 251 (354)
+++.+||=||+|.|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3679999999999999999988766778999999 888888765 4799999999865 2 33 59999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 252 IIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 252 ~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-..--.-+.. -...+++.+++.|+| ||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~-~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP-DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE-EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC-CcEEEEEc
Confidence 884332111111 135889999999999 88777654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.3e-05 Score=70.32 Aligned_cols=100 Identities=16% Similarity=0.285 Sum_probs=71.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc----CCCeEE--eecCCCC---CCCcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK----CHGVEH--VGGDMFD---GVPEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~v~~--~~~d~~~---~~~~~D~i~~~~~l 257 (354)
.+.+|||+|+|.|..+.++...++.. +++.+|. +.+.+.++. ...... ...++.. ++++.|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 45799999999999888887777743 5789998 777776654 111111 1112221 34457999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
-.++++...++++++.+.+.+ .|+|+|+-.+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~ 143 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP---VLVLVEPGTP 143 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC---cEEEEcCCCh
Confidence 999888888888888777653 8999997543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.1e-05 Score=65.45 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCC----CCCC----CcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDM----FDGV----PEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~----~~~~----~~~D~i~ 252 (354)
....+||+|||+|..+..++...|+.+++++|. +.++..+.+ .+++.++..++ +.+- ..+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999999999999999999 655555443 68888885544 3332 2378887
Q ss_pred ecc--cccc-----------CC-----------hHHHHHHHHHHHHhcCCCCceEEE
Q 018565 253 IKW--VLHD-----------WG-----------DDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 253 ~~~--~lh~-----------~~-----------~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
++- +-+. +. .+....++.-+.+.|+| ||.+.+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~-gg~~~l 283 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP-GGFEQL 283 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc-CCeEEE
Confidence 752 2221 00 11245666777888999 887665
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=70.20 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=76.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChH-
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDD- 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~- 263 (354)
....++|+|||.|.+..- +|.+..++.|+ ...+..++..+.......|+.+ |.+ .+|..+...++|||...
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 478899999999987532 48888999999 6667777654433567788888 654 49999999999998644
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
....+++++.+.++| ||..+|.-.
T Consensus 121 RR~~~l~e~~r~lrp-gg~~lvyvw 144 (293)
T KOG1331|consen 121 RRERALEELLRVLRP-GGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHhcC-CCceEEEEe
Confidence 678899999999999 999888654
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.5e-05 Score=76.11 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc-cc-----CCCeEEeecCCCC---CCC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA-EK-----CHGVEHVGGDMFD---GVP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~~v~~~~~d~~~---~~~--~~D~i~~~~~ 256 (354)
....+||||||.|.++..+++.+|+..++++|. ...+..+ +. -.++.++.+|+.. -++ +.|.|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 467899999999999999999999999999998 4433332 21 4678888877642 244 3677766432
Q ss_pred cccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
= -|+... ...+|+.+++.|+| ||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~-gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD-NGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC-CCEEEEEc
Confidence 2 233221 35789999999999 99998754
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=63.48 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=83.1
Q ss_pred HHHhcCCCcc-CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhh-hcccCCCeE-EeecCCCC-C---C----
Q 018565 178 AIIEGCPEVF-DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVC-VAEKCHGVE-HVGGDMFD-G---V---- 245 (354)
Q Consensus 178 ~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~d~~~-~---~---- 245 (354)
.+++.+. . ..+.++||+|||+|.++..+++. +..+++++|. +.++. ..+...++. +...|+.. . +
T Consensus 65 ~~l~~~~--~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 65 EALEEFN--IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHhcC--CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4444444 2 35679999999999999999986 4457999999 54554 455555654 33345542 1 1
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
+.+|+.+++.. .+|..+.++|+| +-.++++-+-+.-... . ........|-. .+....++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~-~--~~~~giv~~~~-------~~~~~~~~ 200 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGRE-K--KNKKGVVRDKE-------AIALALHK 200 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHh-h--cCcCCeecCHH-------HHHHHHHH
Confidence 23676666543 357788899998 5444444322211110 0 00000011110 11223567
Q ss_pred HHHHHHHcCCceeEEEEcC
Q 018565 326 WDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~~ 344 (354)
+...+.+.||++..+.+.|
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7778888999998887764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.96 E-value=5e-06 Score=78.26 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=67.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEe---ec-hHHhhhcccCCCeEEeecCCCC---CCCc--ceEEEeccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINF---DL-PHVVCVAEKCHGVEHVGGDMFD---GVPE--ADAAIIKWVLH 258 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~d~~~---~~~~--~D~i~~~~~lh 258 (354)
.....+||||||+|.++..|..+ ++....+ |. +..++.|-+ -.|.-+-+-+.+ |+|+ ||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 45678999999999999999987 4433222 22 223333322 113333233322 6664 99999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.|...+ ..+|-++-|+|+| ||.+++..+-.
T Consensus 193 ~W~~~~-g~~l~evdRvLRp-GGyfv~S~ppv 222 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRP-GGYFVLSGPPV 222 (506)
T ss_pred cchhcc-cceeehhhhhhcc-CceEEecCCcc
Confidence 998765 4689999999999 99988866543
|
; GO: 0008168 methyltransferase activity |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.2e-05 Score=71.07 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--C-CcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--V-PEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~-~~~D~i~~~ 254 (354)
++.+|||+|||+|.++..+++. ..+++++|. +++++.+++ .++++|+.+|+.+ . . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3589999999999999999984 468999999 888887764 3579999999876 2 2 249999885
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.8e-05 Score=63.74 Aligned_cols=101 Identities=22% Similarity=0.360 Sum_probs=75.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCC----CeEEEeec-hHHhhhcc-----cCCCeEE--eecCCCCC---CCc--ce-
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPR----IRGINFDL-PHVVCVAE-----KCHGVEH--VGGDMFDG---VPE--AD- 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~~~v~~--~~~d~~~~---~~~--~D- 249 (354)
.+...++|+|.|+..-+..+...+.. .+++.+|+ +.++.... +.+.+++ +++|+..+ .|. --
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888887665 78999998 55554322 2344444 56777652 333 22
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE-Eeee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII-VEAI 289 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli-~e~~ 289 (354)
.+++.+.|.++++.++..+|.+++.+|+| |-.+++ +|..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p-Gd~~LlGvDl~ 196 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP-GDYFLLGVDLR 196 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC-cceEEEecccc
Confidence 45778999999999999999999999999 888887 4543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.4e-05 Score=66.27 Aligned_cols=75 Identities=19% Similarity=0.403 Sum_probs=62.2
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~ 246 (354)
...++...+ ..+...||+||.|+|.++..++++ +.+++.+++ |.++....+ ....++..||+++ +.|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 345666666 788999999999999999999998 567888888 888877654 5789999999999 888
Q ss_pred cceEEEec
Q 018565 247 EADAAIIK 254 (354)
Q Consensus 247 ~~D~i~~~ 254 (354)
-||.++.+
T Consensus 123 ~fd~cVsN 130 (315)
T KOG0820|consen 123 RFDGCVSN 130 (315)
T ss_pred ccceeecc
Confidence 89988763
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=61.45 Aligned_cols=131 Identities=17% Similarity=0.104 Sum_probs=89.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC---CCC--cceEEEe
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD---GVP--EADAAII 253 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~~--~~D~i~~ 253 (354)
+.+.+|||.=.|-|.++++.+++.. ..++-++. |++++.|.- ..+|+++.||..+ +++ +||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 4678999999999999999988732 36666666 888887763 4578999999987 354 3898864
Q ss_pred ccc-cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH
Q 018565 254 KWV-LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ 332 (354)
Q Consensus 254 ~~~-lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~ 332 (354)
--. +..-..=...++.+++++.||| ||+++-.-........ | .--.....+.|++
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkr-gGrlFHYvG~Pg~ryr----------------------G-~d~~~gVa~RLr~ 267 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKR-GGRLFHYVGNPGKRYR----------------------G-LDLPKGVAERLRR 267 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCc-CCcEEEEeCCCCcccc----------------------c-CChhHHHHHHHHh
Confidence 110 0000122356899999999999 9999864322111100 0 0125567788999
Q ss_pred cCCceeEEEEc
Q 018565 333 AGFSRYNITSI 343 (354)
Q Consensus 333 aGf~~~~~~~~ 343 (354)
+||..++....
T Consensus 268 vGF~~v~~~~~ 278 (287)
T COG2521 268 VGFEVVKKVRE 278 (287)
T ss_pred cCceeeeeehh
Confidence 99998776543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00097 Score=54.59 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC--CCcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG--VPEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~--~~~~D~i~~~~~ 256 (354)
...-++|||||+|..+..+++. .|+..+...|+ |+.++...+ ..++..+..|+.+. ..+.|+++++-.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCC
Confidence 3688999999999999998874 57888999999 888776443 45577788888884 235888877543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.3e-05 Score=63.52 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=67.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc---c---CCCeEEeecCCCC-C-CCcceEEEeccccccCCh
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE---K---CHGVEHVGGDMFD-G-VPEADAAIIKWVLHDWGD 262 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~v~~~~~d~~~-~-~~~~D~i~~~~~lh~~~~ 262 (354)
+++|||+|.|.-++-++=.+|+.+++.+|. ..-+.-.+ . -+++++..+.+.+ . ...||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 33332222 1 5679999998888 3 34599999988653
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEE
Q 018565 263 DECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...++.-+...+++ ||.++..
T Consensus 127 --l~~l~~~~~~~l~~-~G~~l~~ 147 (184)
T PF02527_consen 127 --LDKLLELARPLLKP-GGRLLAY 147 (184)
T ss_dssp --HHHHHHHHGGGEEE-EEEEEEE
T ss_pred --HHHHHHHHHHhcCC-CCEEEEE
Confidence 34778888889999 9998875
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.83 E-value=9e-05 Score=62.69 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=63.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C---Cc-ceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V---PE-ADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~---~~-~D~i~~ 253 (354)
.+.++||++||+|.++.+++.+... +++.+|. +.++..+++ .++++++.+|.++ . . .. +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4579999999999999999998653 7899998 777666553 3578999999865 1 1 12 677776
Q ss_pred ccccccCChHHHHHHHHHHH--HhcCCCCceEEEEeeee
Q 018565 254 KWVLHDWGDDECIKILKNCK--EAITKDKGKVIIVEAII 290 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~--~~L~p~gG~lli~e~~~ 290 (354)
.-.... .....++..+. .+|++ + .++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~-~-~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED-T-VLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC-C-eEEEEEecC
Confidence 443322 22334444443 35666 4 466666543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00013 Score=63.97 Aligned_cols=92 Identities=14% Similarity=0.254 Sum_probs=66.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-- 247 (354)
.+.+++... ..+...|||||+|.|.++..|+++.. +++++++ +..++..++ .++++++.+|+.+ ++++
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 456666666 56688999999999999999999855 4677776 666666554 5889999999999 7774
Q ss_pred ceEEEeccccccCChHHHHHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKN 271 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~ 271 (354)
.-..+..|.-++.+.+-..+++..
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhc
Confidence 223344566666666655555544
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00032 Score=59.94 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=87.6
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--c-ceEEEeccccccCC
Q 018565 193 LVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--E-ADAAIIKWVLHDWG 261 (354)
Q Consensus 193 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~-~D~i~~~~~lh~~~ 261 (354)
|.||||-.|.+...|+++...-+++..|+ +..++.|++ .++|++..+|-++.++ + .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999999 888877764 6899999999888543 3 788888764 3
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEE
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 341 (354)
-....++|.+....++. ..++++.- . .....++++|.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~~-~~~lILqP-----~---------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS-AKRLILQP-----N---------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT---EEEEEE-----S---------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc-CCeEEEeC-----C---------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 55678888888777765 44555411 0 126678899999999999865
Q ss_pred Ec---CCceeEEEEe
Q 018565 342 SI---HAVQSLIEAF 353 (354)
Q Consensus 342 ~~---~~~~~~i~~~ 353 (354)
-+ +.++-+|.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 55 3345566554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.5e-05 Score=72.68 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=64.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC-----C--CcceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG-----V--PEADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~-----~--~~~D~i~ 252 (354)
..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++ ..+++++.+|+.+. . ..||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999874 47999999 888887765 35899999998651 1 1389998
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+.-.=- . ....+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr~--G--~~~~~l~~l~~-l~~-~~ivyv 394 (431)
T TIGR00479 368 LDPPRK--G--CAAEVLRTIIE-LKP-ERIVYV 394 (431)
T ss_pred ECcCCC--C--CCHHHHHHHHh-cCC-CEEEEE
Confidence 732210 0 02355555543 788 765555
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00096 Score=59.14 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=91.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHh-------hh---c----------------------c-----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVV-------CV---A----------------------E----- 229 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~---a----------------------~----- 229 (354)
....+||-=|||.|.++-+++++ +..+.+.+. -.|+ .. . +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45679999999999999999998 555665554 2221 10 0 0
Q ss_pred ---------cCCCeEEeecCCCC--CCC----cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC
Q 018565 230 ---------KCHGVEHVGGDMFD--GVP----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294 (354)
Q Consensus 230 ---------~~~~v~~~~~d~~~--~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~ 294 (354)
...++++..|||.+ +.+ .+|+|+.+..+-- -..+.+.|+.+.++||| ||..+=+.+..-...
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkp-gG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKP-GGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhcc-CCEEEecCCccccCC
Confidence 03578899999998 333 4999988876643 44688999999999999 884443332221111
Q ss_pred CCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEE
Q 018565 295 GVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 342 (354)
. .. ......-+.+.+|+..+.+..||++.+...
T Consensus 210 ~-------------~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 P-------------MS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C-------------CC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00 000223567899999999999999987544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.4e-05 Score=67.65 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=61.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-C--C-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-G--V- 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~--~- 245 (354)
..++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. +++++.+++ .++++++.+||.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 456666665 55678999999999999999999986 789999999 999988875 2589999999886 1 1
Q ss_pred ---CcceEEEec
Q 018565 246 ---PEADAAIIK 254 (354)
Q Consensus 246 ---~~~D~i~~~ 254 (354)
+++|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 158887763
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.8e-05 Score=69.40 Aligned_cols=89 Identities=6% Similarity=-0.018 Sum_probs=62.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C-C-CcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G-V-PEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~-~-~~~D~i~~~~~l 257 (354)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.++. .+++++..+|+.+ . . .+||+|++.-.=
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999864 468999999 888887764 3479999999865 1 2 348998885321
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-. ...++++.+. .++| ++.+++
T Consensus 311 ~G----~~~~~l~~l~-~~~p-~~ivyv 332 (374)
T TIGR02085 311 RG----IGKELCDYLS-QMAP-KFILYS 332 (374)
T ss_pred CC----CcHHHHHHHH-hcCC-CeEEEE
Confidence 11 1124445454 3688 665555
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.3e-05 Score=51.26 Aligned_cols=47 Identities=36% Similarity=0.581 Sum_probs=40.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.|++.|...+++.|+.|||+.+|++..-+.|+|..|+..|++++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~~dp 52 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVERDP 52 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCeecCc
Confidence 45788888765778999999999999999999999999999998763
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.5e-05 Score=63.51 Aligned_cols=141 Identities=21% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCC--eEEeecCCCC-CCC--cceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHG--VEHVGGDMFD-GVP--EADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~--v~~~~~d~~~-~~~--~~D~i~~~~~lh~ 259 (354)
+....++|||||.|.....+..+. --+.+..|. ..|+..++. .+. ++...+|-.. ++. ++|+|+.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH- 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH- 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence 355789999999999999998874 235778887 778877765 233 3444566555 554 499999999998
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCccc------CCHHHHHHHHHHc
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKE------RSLKEWDYVLRQA 333 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~------~t~~e~~~ll~~a 333 (354)
|.. +...-+.++..+||| +|.++ ..+. ..+.- .+......+..+-. .+|-. -...++-.+|..|
T Consensus 149 W~N-dLPg~m~~ck~~lKP-Dg~Fi-asml-ggdTL-----yELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 149 WTN-DLPGSMIQCKLALKP-DGLFI-ASML-GGDTL-----YELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hhc-cCchHHHHHHHhcCC-Cccch-hHHh-ccccH-----HHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhc
Confidence 443 345778899999999 77443 2222 22111 11222223332222 23321 1357888999999
Q ss_pred CCceeEE
Q 018565 334 GFSRYNI 340 (354)
Q Consensus 334 Gf~~~~~ 340 (354)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9987765
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0005 Score=62.22 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------------CCCeEEeecCCCCC---C-Ccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFDG---V-PEA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~---~-~~~ 248 (354)
++..++|-+|||.|..+.++.+ +| -.+++.+|+ |+|++.++. .+|++++..|.++- . ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999999877 67 457899999 999998772 68999999999882 2 249
Q ss_pred eEEEeccccccCChH--------HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 249 DAAIIKWVLHDWGDD--------ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 249 D~i~~~~~lh~~~~~--------~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
|.++.- ++|+ ...++.+-+++.|++ +|.+++..
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e-~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE-TGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc-CceEEEec
Confidence 998873 3332 235778888999999 99888743
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0011 Score=56.04 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC-C--------
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG-V-------- 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~-~-------- 245 (354)
..++.+.+. .+.++..|+|+|+-.|.++..+++.. ++..++++|+.++-.. ..|.++.+|+..+ .
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHc
Confidence 345666664 46789999999999999999988865 4456899998555443 4499999999983 1
Q ss_pred C--cceEEEec---cccccCC------hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 246 P--EADAAIIK---WVLHDWG------DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 246 ~--~~D~i~~~---~~lh~~~------~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+ ++|+|++- ++--++. ..-+...+.-+...|+| ||.+++-.+
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~-~G~fv~K~f 160 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP-GGSFVAKVF 160 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC-CCeEEEEEE
Confidence 2 25998852 2222222 23456677778889999 998877543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0019 Score=58.73 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=75.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC--C-CCcceEEEeccccccCChH
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD--G-VPEADAAIIKWVLHDWGDD 263 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~--~-~~~~D~i~~~~~lh~~~~~ 263 (354)
+.++.++||+||++|.++..++++ +.+++++|...+.......++|.+..+|-+. + ..++|.+++-.+.. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 357789999999999999999998 5699999986666666668999999998877 3 23489999877643 2
Q ss_pred HHHHHHHHHHHhcCCCC-ceEEEEeeeeCCCCC
Q 018565 264 ECIKILKNCKEAITKDK-GKVIIVEAIIEEDDG 295 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~g-G~lli~e~~~~~~~~ 295 (354)
.++++-+.++|.. | -+-.|+...++....
T Consensus 283 --~rva~lm~~Wl~~-g~cr~aIfnLKlpmk~r 312 (357)
T PRK11760 283 --ARVAELMAQWLVN-GWCREAIFNLKLPMKKR 312 (357)
T ss_pred --HHHHHHHHHHHhc-CcccEEEEEEEcCCCCC
Confidence 2666777778876 4 346666666665443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00023 Score=59.75 Aligned_cols=105 Identities=19% Similarity=0.144 Sum_probs=63.0
Q ss_pred HHHHhcCCCc-cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCCC---------C
Q 018565 177 RAIIEGCPEV-FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------V 245 (354)
Q Consensus 177 ~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~ 245 (354)
.++.+.++.. ..+..++||+||++|.++..++++. +..+++++|+.... ....+.+..+|+.++ .
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhhc
Confidence 3445555511 1245999999999999999999987 67899999984331 123444445555431 1
Q ss_pred ----CcceEEEeccccc---c------CChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 246 ----PEADAAIIKWVLH---D------WGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 246 ----~~~D~i~~~~~lh---~------~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..+|+|++-.... + ...+.+...|.-+.+.|+| ||.+++-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~-gG~~v~K 138 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP-GGTFVIK 138 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT-TEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC-CCEEEEE
Confidence 2589998854221 1 1122344555666677999 9987763
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=59.13 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=83.0
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH---hhhccc---CCCeEEeecCCCC-C-CCc-ceEEEecccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHV---VCVAEK---CHGVEHVGGDMFD-G-VPE-ADAAIIKWVLHD 259 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~d~~~-~-~~~-~D~i~~~~~lh~ 259 (354)
..+++|||.|.|.-+.-++=.+|+.+++.+|. ..- ++.+.. -++++++.+.+.+ . .+. ||+|+++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999997 332 333332 5779999998877 2 235 99999987643
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
...++.-+...+++ ||.++..-... ++. ...+.+......|+...+
T Consensus 147 -----L~~l~e~~~pllk~-~g~~~~~k~~~---------------------------~~~-e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV-GGGFLAYKGLA---------------------------GKD-ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc-CCcchhhhHHh---------------------------hhh-hHHHHHHHHHhhcCcEEE
Confidence 33556666778888 88765311100 000 144556667777888888
Q ss_pred EEEc
Q 018565 340 ITSI 343 (354)
Q Consensus 340 ~~~~ 343 (354)
+.+.
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 7766
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00042 Score=65.10 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=68.8
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C-CCcceEEEecccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G-VPEADAAIIKWVLHD 259 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~-~~~~D~i~~~~~lh~ 259 (354)
..+|||++||+|.++..++...+..+++++|+ ++.++.+++ .+++++..+|... . .+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999998877568999999 888877764 3456688888765 2 23599998843 2
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.. ...++..+.+.+++ ||.+.|.
T Consensus 135 -Gs--~~~~l~~al~~~~~-~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR-GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC-CCEEEEE
Confidence 11 23677887778899 9999887
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00026 Score=58.84 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=65.4
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------CCCeEEeecCCCCCCCc-ceEEEec
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFDGVPE-ADAAIIK 254 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~~~~~-~D~i~~~ 254 (354)
.--+.|||||.|.++..|...+|+.-+.|.++ -.+.+-.++ ..++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999999999988 444432221 35567776666653343 2222233
Q ss_pred cccccCChHH-----------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 255 WVLHDWGDDE-----------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 255 ~~lh~~~~~~-----------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-.++.+||+. ...++.+..-+|++ ||.++.+..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~-gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE-GGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc-CceEEEEeeH
Confidence 3333334332 23566777778998 9999887644
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00063 Score=60.75 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=66.9
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-- 247 (354)
.+.+++.++ ..+...|||||+|.|.++..|++.. -++++++. +..++..++ .++++++.+|+.+ +.+.
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 455666666 5678999999999999999999986 67888888 777766654 6899999999998 5443
Q ss_pred --ceEEEeccccccCChHHHHHHHHHHHHhcCC
Q 018565 248 --ADAAIIKWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 248 --~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
-.+.+..+.-++.+. .++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is~----~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISS----PILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGHH----HHHHHHHHHGGG
T ss_pred cCCceEEEEEecccchH----HHHHHHhhcccc
Confidence 344555555554443 455555554333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00012 Score=49.56 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.+|..-.++.|+..|... +|.|+.+||+.+|+++..+.+.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN-GPMTVSELAEELGISQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEec
Confidence 4566667888899999432 899999999999999999999999999999998876
|
... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=9.9e-05 Score=61.44 Aligned_cols=148 Identities=17% Similarity=0.217 Sum_probs=83.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeec-CCCCCCCcceEEEeccccccCChHHH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGG-DMFDGVPEADAAIIKWVLHDWGDDEC 265 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-d~~~~~~~~D~i~~~~~lh~~~~~~~ 265 (354)
..+.++||+|+|.|..+..++..+.+ +...++ ..|..+.+. .+..+... +..+.--.+|+|.|.++|.--.+ -
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~--p 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFD--P 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcC--h
Confidence 45689999999999999888765543 233334 455555543 22222211 11111114899999999854333 3
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC--HHHHHHHHHHcCCceeEEEEc
Q 018565 266 IKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS--LKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 266 ~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t--~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.++|+.++.+|+|+.|++++. .++|-...|+....-... ..-+.+- .+|+.+. ...+.++|+++||.+.....+
T Consensus 186 ~kLL~Di~~vl~psngrviva-LVLP~~hYVE~N~~g~~~-rPdn~Le--~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPSNGRVIVA-LVLPYMHYVETNTSGLPL-RPDNLLE--NNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccCCCcEEEE-EEecccceeecCCCCCcC-CchHHHH--hcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 589999999999866777663 233211100000000000 0001111 3444332 345678999999999887776
Q ss_pred C
Q 018565 344 H 344 (354)
Q Consensus 344 ~ 344 (354)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00031 Score=59.69 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=64.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC--CCcceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG--VPEADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~--~~~~D~i~~~~~l 257 (354)
.++..|+|.-||.|.++..+++..+..+++..|+ |+.++.+++ ..++....+|..+- ...+|-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 4678999999999999999999777888999999 888776654 67899999998872 2349988885532
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceE
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~l 283 (354)
.+..+|..+.+.+++ ||.+
T Consensus 180 ------~~~~fl~~~~~~~~~-~g~i 198 (200)
T PF02475_consen 180 ------SSLEFLDAALSLLKE-GGII 198 (200)
T ss_dssp ------SGGGGHHHHHHHEEE-EEEE
T ss_pred ------HHHHHHHHHHHHhcC-CcEE
Confidence 234678888899998 7654
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00076 Score=55.41 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=71.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCcceEEEeccccccCCh
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPEADAAIIKWVLHDWGD 262 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~~ 262 (354)
..+-|+|.|+|.++...+++ .-+++.++. |...+.+++ ..+++++.+|..+ ++..+|+|+|-..=-.+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 67899999999998776665 447888888 877777765 5789999999999 8888999988543222223
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-..+++.+.+-|+- +++++=.+
T Consensus 112 E~qVpV~n~vleFLr~-d~tiiPq~ 135 (252)
T COG4076 112 EKQVPVINAVLEFLRY-DPTIIPQE 135 (252)
T ss_pred ccccHHHHHHHHHhhc-CCccccHH
Confidence 3445778888888887 78776544
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0022 Score=55.76 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=67.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC--cceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP--EADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~--~~D~i~~~~~lh 258 (354)
.+.+.+|+|||||.--++.-.....|+.+++++|+ ...++.... ..+.++...|..+..| .+|+.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 34689999999999999988888888999999999 777666554 5678888889999544 489999999998
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
-+........+ ++.+.++. -.++|+-+...
T Consensus 183 ~le~q~~g~g~-~ll~~~~~--~~~vVSfPtrS 212 (251)
T PF07091_consen 183 CLERQRRGAGL-ELLDALRS--PHVVVSFPTRS 212 (251)
T ss_dssp HHHHHSTTHHH-HHHHHSCE--SEEEEEEES--
T ss_pred HHHHHhcchHH-HHHHHhCC--CeEEEeccccc
Confidence 76655433322 33344442 36666555443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0034 Score=55.87 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=95.2
Q ss_pred HHHHHhcCCCcc--CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec------hHHhh---------------------
Q 018565 176 MRAIIEGCPEVF--DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL------PHVVC--------------------- 226 (354)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~--------------------- 226 (354)
.+.+...+++.. +...+||-=|||.|.++..|+...+.+++--+.. .-++.
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~ 214 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSL 214 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccc
Confidence 344555555211 2356899999999999999999887766521110 00000
Q ss_pred ----hccc--------------CCCeEEeecCCCC--CCC----cceEEEeccccccCChHHHHHHHHHHHHhcCCCCce
Q 018565 227 ----VAEK--------------CHGVEHVGGDMFD--GVP----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGK 282 (354)
Q Consensus 227 ----~a~~--------------~~~v~~~~~d~~~--~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~ 282 (354)
+.+. ....+..+|||.+ +.+ .||+|+.++.+-- ...+.+.|..+.+.||| ||.
T Consensus 215 ~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~-GGv 291 (369)
T KOG2798|consen 215 SRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKP-GGV 291 (369)
T ss_pred ccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccC-CcE
Confidence 0000 2445557799987 322 3999988866642 45688999999999999 887
Q ss_pred EEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 283 VIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 283 lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.+=+.+..-.... .. . ... ..+-+.+.+++..+.+.-||++.+-..+
T Consensus 292 WiNlGPLlYHF~d-~~------g------~~~-~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 292 WINLGPLLYHFED-TH------G------VEN-EMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EEeccceeeeccC-CC------C------Ccc-cccccccHHHHHHHHHhcCcEEEEeeee
Confidence 6655544322111 00 0 001 2345778999999999999999876544
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00036 Score=51.36 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=48.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+.|++.|...+++.|+.+||+.+|++...+.|.|+.|...|+++.... ++.|++++.
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~---~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQ---NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCC---CCceeecHH
Confidence 557777876436899999999999999999999999999999998742 377988764
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00059 Score=47.28 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=48.9
Q ss_pred HHHcChhhhhhhCCC-CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 37 AVELGIAEAVEEKGS-PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 37 a~~lglf~~L~~~~~-~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
..+-.|+..|...++ ++|+.+||+.+|++...+.++|..|...|+++..+.. ++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~~~~~--~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGT--PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC--CCceEeec
Confidence 456678888887643 3999999999999999999999999999999987521 36787764
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0033 Score=52.12 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=85.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeechHHhh-----------hccc--CCCeEEeecCCCC-CCC-cceE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDLPHVVC-----------VAEK--CHGVEHVGGDMFD-GVP-EADA 250 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~-----------~a~~--~~~v~~~~~d~~~-~~~-~~D~ 250 (354)
+++..+|+|+=.|.|.+..-+... .|.-.++.+-..+... .+++ ..+++....+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 788999999999999999888764 2333333322222211 1111 3445555444444 222 3677
Q ss_pred EEecccccc-----CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 251 AIIKWVLHD-----WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 251 i~~~~~lh~-----~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
++....-|. +....+.++.+.++++||| ||.++|.|+....... .. ... .-..++..-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP-GGv~~V~dH~a~pG~~-~~---dt~------------~~~ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP-GGVYLVEDHRADPGSG-LS---DTI------------TLHRIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC-CcEEEEEeccccCCCC-hh---hhh------------hhcccChHH
Confidence 666433332 2345678999999999999 9999999887655433 10 010 012235667
Q ss_pred HHHHHHHcCCceeEEEEc
Q 018565 326 WDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~ 343 (354)
..+-.+++||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 778888999988755443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=57.75 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=57.2
Q ss_pred CCceEEEecCCccHH-HHHHHHH-CCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC---CCCcceEEEec
Q 018565 189 GIETLVDIGGNDGTT-LRTLTKA-FPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD---GVPEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~-~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~~~~D~i~~~ 254 (354)
.+.+|+=||||.=-+ ++.++++ .++..++++|+ ++..+.+++ ..+++|+.+|..+ +..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999997655 4555554 46788999999 877777654 6899999999876 34579999988
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
..... +.+...++|.++.+.|+| |..|++
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~-ga~l~~ 228 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAP-GARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T-TSEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCC-CcEEEE
Confidence 77653 344567999999999999 877765
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=53.89 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=74.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-----CCCeEEeecCCCC---CCC--cceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-----CHGVEHVGGDMFD---GVP--EADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~---~~~--~~D~i~~~~~l 257 (354)
.++++||.||=|-|.....+.++-|..+.++---|.+..+.+. .++|....|-..+ ..+ .||-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5789999999999999999988888877776666999988875 5778777774444 344 38888764432
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
.+ -++...+.+.+.++||| +|.+=.....
T Consensus 180 e~--yEdl~~~hqh~~rLLkP-~gv~SyfNg~ 208 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKP-EGVFSYFNGL 208 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCC-CceEEEecCc
Confidence 22 35677889999999999 9877665543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.001 Score=53.51 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=59.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-C-CCcceE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA----FPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD-G-VPEADA 250 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~-~~~~D~ 250 (354)
..+..+|+|+|||.|.++..++.. .++.+++++|. ++..+.+.. ..++++..+++.+ + ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 457789999999999999999882 27899999998 666665543 3566677766655 2 334778
Q ss_pred EEeccccccCChHHHHHHHHHHHH
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKE 274 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~ 274 (354)
++.-+..-.+++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 887777766554 44555544
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0041 Score=59.91 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=71.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CCC-cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GVP-EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~-~~D~i~~~ 254 (354)
..++.+|||+++|.|.-+..++....+ -.++..|+ +.-+..+++ ..++.+...|... ..+ .||.|++-
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 356789999999999999999987643 47888998 555554443 3567777777654 233 38999852
Q ss_pred cc------c-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEee
Q 018565 255 WV------L-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 ~~------l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
-. + ..|+.+.+ .++|+++.+.||| ||.|+-+.-
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp-GG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP-GGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECC
Confidence 21 1 22333332 6899999999999 998866543
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00052 Score=52.86 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCce---EecCc
Q 018565 28 FTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMA---FQQTP 98 (354)
Q Consensus 28 ~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~ 98 (354)
.-.+++|.-..++.|+..|... ++.++.|||+.+++++..+++.|+.|...|++..+.. |+ |++++
T Consensus 7 ~~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~----Gr~~~Y~l~~ 75 (117)
T PRK10141 7 LQLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESGLLLDRKQ----GKWVHYRLSP 75 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE----cCEEEEEECc
Confidence 3456677777899999999753 6899999999999999999999999999999987763 44 76654
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00034 Score=44.60 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=39.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceee
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKE 84 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~ 84 (354)
++.|...|.+ +|.++.|||+.+|+++..+++.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCcCeeC
Confidence 5677888887 8999999999999999999999999999999874
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.023 Score=48.55 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=90.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-h----HHhhhcccCCCeEEeecCCCCC------CCcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-P----HVVCVAEKCHGVEHVGGDMFDG------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~------~~~~D~i~~~ 254 (354)
+.++.+||-+|..+|.....+..- .|.-.+.+++. | +.+..+++..+|-.+-.|...| .+..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 678899999999999999999885 34667888887 5 4455566678898888998885 2347888774
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
-. + ++++.-++.++..-||+ ||.++++=-...-+.. .+| .. ...+=.+.|++.|
T Consensus 151 Va-Q---p~Qa~I~~~Na~~fLk~-gG~~~i~iKa~siD~t-~~p---~~-----------------vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA-Q---PDQARIAALNARHFLKP-GGHLIISIKARSIDST-ADP---EE-----------------VFAEEVKKLKEEG 204 (229)
T ss_dssp -S-S---TTHHHHHHHHHHHHEEE-EEEEEEEEEHHHH-SS-SSH---HH-----------------HHHHHHHHHHCTT
T ss_pred CC-C---hHHHHHHHHHHHhhccC-CcEEEEEEecCcccCc-CCH---HH-----------------HHHHHHHHHHHcC
Confidence 32 2 35677888999999999 9999886433222211 100 00 0122245677889
Q ss_pred CceeEEEEcCC---ceeEEEE
Q 018565 335 FSRYNITSIHA---VQSLIEA 352 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~ 352 (354)
|++.+...+.. .+.++.+
T Consensus 205 ~~~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 205 FKPLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp CEEEEEEE-TTTSTTEEEEEE
T ss_pred CChheEeccCCCCCCcEEEEE
Confidence 99999988833 3555554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0046 Score=49.78 Aligned_cols=95 Identities=20% Similarity=0.312 Sum_probs=63.9
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-C--CC---eEEeecCCCC---CCC---cceEEEeccccc
Q 018565 193 LVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-C--HG---VEHVGGDMFD---GVP---EADAAIIKWVLH 258 (354)
Q Consensus 193 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~~---v~~~~~d~~~---~~~---~~D~i~~~~~lh 258 (354)
++|+|||+|... .+....+. ..++++|. +.++...+. . .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 33343333 47788888 655555332 1 11 5777777654 333 48999 544444
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
++.. ....++++.+.++| +|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~-~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP-GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC-CcEEEEEeccCCC
Confidence 4333 56889999999999 9999888766443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.046 Score=45.85 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=98.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-h----HHhhhcccCCCeEEeecCCCCCC------CcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-P----HVVCVAEKCHGVEHVGGDMFDGV------PEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~~------~~~D~i~~~~ 255 (354)
+.++.+||=+|..+|.....+..-.+.-.+.+++. | +.+..+++..++-.+-+|...|. +..|+|+.--
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 77899999999999999999999887666777776 4 34555666788888888988863 3578887632
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
. .++++.-+..|+..-||+ ||.++++=-...-+.. ..| .. -..+-.+-|++.||
T Consensus 154 A----Qp~Qa~I~~~Na~~FLk~-~G~~~i~iKArSIdvT-~dp---~~-----------------vf~~ev~kL~~~~f 207 (231)
T COG1889 154 A----QPNQAEILADNAEFFLKK-GGYVVIAIKARSIDVT-ADP---EE-----------------VFKDEVEKLEEGGF 207 (231)
T ss_pred C----CchHHHHHHHHHHHhccc-CCeEEEEEEeeccccc-CCH---HH-----------------HHHHHHHHHHhcCc
Confidence 1 145677788889999999 9988886555443333 110 00 02222355778899
Q ss_pred ceeEEEEcC---CceeEEEEe
Q 018565 336 SRYNITSIH---AVQSLIEAF 353 (354)
Q Consensus 336 ~~~~~~~~~---~~~~~i~~~ 353 (354)
++.++..+. ..+.+|.+.
T Consensus 208 ~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 208 EILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeeEEeccCCcccceEEEEEe
Confidence 999998873 347776654
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0073 Score=53.77 Aligned_cols=145 Identities=14% Similarity=0.026 Sum_probs=94.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCCCC------Cc-----c
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFDGV------PE-----A 248 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~------~~-----~ 248 (354)
+...||.+|||-=.....+.. .+++++.-+|.|++++.-++ ..+.+++..|+..++ .+ .
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 456899999998877766632 23578888888988774332 468899999987421 12 3
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchh-hhhhhccHHh--hcccCCcccCCHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFK-SVRLMLDMVM--MAHTNKGKERSLKE 325 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~l~~--~~~~~~g~~~t~~e 325 (354)
-++++-.++.+++.+++.++|+.+.+...| |+.|+ .|.+.+.... . .. .......... ... .-....+.++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~-gs~l~-~d~~~~~~~~-~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAP-GSRLA-FDYVRPLDGE-W--RAGMRAPVYHAARGVDGS-GLVFGIDRAD 233 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCC-CcEEE-EEeccccchh-H--HHHHHHHHHHhhhccccc-ccccCCChhh
Confidence 478888999999999999999999998888 66555 5554431111 0 00 0000000000 000 0011246899
Q ss_pred HHHHHHHcCCceeEE
Q 018565 326 WDYVLRQAGFSRYNI 340 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~ 340 (354)
..++|++.||+..+.
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998775
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0041 Score=52.12 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=62.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC-C-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIR---------GINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV-P- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~-~- 246 (354)
..+...|+|-=||+|.++++.+...++.. +++.|+ ++++..++. ...+.+...|+.+ +. .
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999887766666 899999 888877764 5678999999998 63 2
Q ss_pred cceEEEeccccccC-Ch-----HHHHHHHHHHHHhcCC
Q 018565 247 EADAAIIKWVLHDW-GD-----DECIKILKNCKEAITK 278 (354)
Q Consensus 247 ~~D~i~~~~~lh~~-~~-----~~~~~~L~~~~~~L~p 278 (354)
.+|+|++.-..-.- .. +-..++++.+.+.+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 48999986554321 21 1234567778888886
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0012 Score=51.98 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC--c-ceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP--E-ADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~--~-~D~i~~~~~lh 258 (354)
.+.+++|+|||.|-++....- +.+-.++|+|+ |+.++.+.. .-.+++...|+.++.+ . ||..+++..+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 578999999999999843322 23346899999 999988765 4567888888888432 3 89988876653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0006 Score=63.58 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=42.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
.++||++||+|.++..+++... +++++|. +++++.+++ ..++++..+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999998888763 8999999 888888775 3478999998865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00069 Score=59.84 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=49.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|...+.++++.|||+++|+++.-+.|+|..|+..|+++.++. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~---~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPE---DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEeehHHH
Confidence 567788876334467999999999999999999999999999999985 3789999753
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0006 Score=55.73 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=46.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---CC--c-ceEEEecc
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---VP--E-ADAAIIKW 255 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~~--~-~D~i~~~~ 255 (354)
.|+|+-||.|..++.+++.+. +++++|+ |..++.++. .++|+++.+|+++. .. . +|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 699999999999999999854 6889998 888877764 57999999999882 22 2 79998753
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00053 Score=61.71 Aligned_cols=99 Identities=18% Similarity=0.344 Sum_probs=62.2
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHH---hhhccc---CCCeEEeecCCCC---CCCcceEEEeccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHV---VCVAEK---CHGVEHVGGDMFD---GVPEADAAIIKWVLH 258 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~---~~~a~~---~~~v~~~~~d~~~---~~~~~D~i~~~~~lh 258 (354)
..+|||||.|.|.-+.++-.-+|.++ +++++. |.. .....+ .....-...|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46799999999998888888888875 556665 322 221111 1122222334333 455556555544444
Q ss_pred cC----ChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 259 DW----GDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 259 ~~----~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
.+ ........++++...+.| ||.|+|+|.-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~-gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP-GGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC-CCeEEEEeCC
Confidence 33 334455589999999999 9999999963
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0059 Score=50.77 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=67.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCCcceEEEeccccccCC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVPEADAAIIKWVLHDWG 261 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~ 261 (354)
-.+++|||+|.|+|.-++..++... ..++..|+ |.....++- ...|.+...|..-+.+.+|+++...++++-
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~- 155 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH- 155 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc-
Confidence 3578999999999999888777532 23444454 544443332 566788888877755569999999999874
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
....+++.-..+.... |-.++|.++.++.
T Consensus 156 -~~a~~l~~~~~~l~~~-g~~vlvgdp~R~~ 184 (218)
T COG3897 156 -TEADRLIPWKDRLAEA-GAAVLVGDPGRAY 184 (218)
T ss_pred -hHHHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 4455667744444444 6677776665544
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0036 Score=57.37 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=66.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC-C-CC--
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-------FPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD-G-VP-- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~-~~-- 246 (354)
..+..+|+|-.||+|.++..+.+. .+..++.|+|+ +.++..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456679999999999999988774 47788999999 666655432 3345678888877 2 32
Q ss_pred -cceEEEeccccccC--Ch-----------------HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 -EADAAIIKWVLHDW--GD-----------------DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 -~~D~i~~~~~lh~~--~~-----------------~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.||+|+++-.+-.. .+ ..-..++.++.+.|++ ||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~-~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP-GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc-ccceeEEe
Confidence 49999886433221 11 1113578889999999 99877643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0064 Score=53.13 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=70.9
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhcc----c---CCCeEEeecCCCC-CC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAE----K---CHGVEHVGGDMFD-GV 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~---~~~v~~~~~d~~~-~~ 245 (354)
..-++..++ ..++.+||+-|.|+|.++-++++. .|.-+..-+|. ..-.+.+. + .+++++...|+.. .+
T Consensus 94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 345556666 789999999999999999999986 47778888887 33333333 2 7899999999988 33
Q ss_pred C----cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 246 P----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 246 ~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+ .+|.|++ ++|.+. ..+-.++++||..||++.-..+
T Consensus 172 ~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 172 LIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred cccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccH
Confidence 3 3899888 333332 3344555567762445554443
|
|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00098 Score=59.03 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=48.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.+.....|.|+.|||+.+|+++.-+.|+|..|+..|++++++ ++|++++..
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~~-----~~Y~lG~~~ 67 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDG-----RLFWLTPRV 67 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-----CEEEecHHH
Confidence 56777776544789999999999999999999999999999999754 889998753
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0072 Score=49.81 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=61.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeec-CCCCC---------CCc--ceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGG-DMFDG---------VPE--ADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-d~~~~---------~~~--~D~i~~ 253 (354)
+++..+|||+||..|.++.-..++. |+--+.++|+.+... ...+.+..+ |+.+| .|+ .|+|+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 5688999999999999999888775 999999999844322 233445544 66553 233 677765
Q ss_pred cccc---------ccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 254 KWVL---------HDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~l---------h~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-..- |....+-|..+|.-....++| +|.+++
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p-~g~fvc 182 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIP-NGSFVC 182 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC-CcEEEE
Confidence 3221 222233455566566667788 887766
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00093 Score=62.54 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=42.5
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
.++||++||+|.++..+++... +++++|. +.+++.+++ .+++++..+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999998888753 7999999 888877764 3478999998765
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.03 Score=48.23 Aligned_cols=151 Identities=12% Similarity=0.056 Sum_probs=92.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHhhhcccCCCeEEeec-CCCCC----CC-cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL--PHVVCVAEKCHGVEHVGG-DMFDG----VP-EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-d~~~~----~~-~~ 248 (354)
...++.+. ....+..+||||..||.++..++++. ...+.++|. .+.....+..+|+..... |+..- +. ..
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 34555565 13467899999999999999999873 346788887 455556666777777654 55541 22 36
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|++++--. --....+|-.+...++| ++.++.. +.|.... . .......-.......+..-..++.+
T Consensus 146 d~~v~DvS-----FISL~~iLp~l~~l~~~-~~~~v~L--vKPQFEa-g------r~~v~kkGvv~d~~~~~~v~~~i~~ 210 (245)
T COG1189 146 DLIVIDVS-----FISLKLILPALLLLLKD-GGDLVLL--VKPQFEA-G------REQVGKKGVVRDPKLHAEVLSKIEN 210 (245)
T ss_pred CeEEEEee-----hhhHHHHHHHHHHhcCC-CceEEEE--ecchhhh-h------hhhcCcCceecCcchHHHHHHHHHH
Confidence 77776332 22356889999999998 7765542 2221111 0 0000000000001123334678889
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
++++.||++..+...|
T Consensus 211 ~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 211 FAKELGFQVKGLIKSP 226 (245)
T ss_pred HHhhcCcEEeeeEccC
Confidence 9999999999887763
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0014 Score=60.91 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCc--ceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPE--ADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~--~D~i~~~~~ 256 (354)
.+...++|+|||.|.....+.. +.....+++|. +.-+.+... .....++.+|+.+ ++++ ||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 3555899999999999887765 45677888887 444443332 4555558889988 6664 999988888
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~ 294 (354)
..|.++. ..++++++++++| ||..++.|.+.....
T Consensus 188 ~~~~~~~--~~~y~Ei~rv~kp-GG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 188 VCHAPDL--EKVYAEIYRVLKP-GGLFIVKEWIKTAKL 222 (364)
T ss_pred cccCCcH--HHHHHHHhcccCC-CceEEeHHHHHhhhc
Confidence 8876654 5889999999999 999998887765443
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0014 Score=59.01 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=48.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|.+..++.|+.|||+.+|++..-+.|+|..|+..|+++.++. .++|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGE---LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEecCHHH
Confidence 456677765447899999999999999999999999999999998753 4889998753
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0014 Score=58.79 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=48.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|...+++.|+.|||+.+|++...+.|+|..|+..|+|..++. .++|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~---~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQ---LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCeEEecHHH
Confidence 456777765446899999999999999999999999999999988753 4789998753
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0085 Score=54.30 Aligned_cols=147 Identities=16% Similarity=0.071 Sum_probs=93.3
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCC-CCC------cce----
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFD-GVP------EAD---- 249 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~-~~~------~~D---- 249 (354)
...||-+|||-=.-+-.+-.. +++++.-+|+|++++.-++ ..++++++.|+.+ +++ +||
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 689999999965544333221 2577888888999886443 2389999999995 543 243
Q ss_pred -EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcc-hhhhhhhc--cHHhhcccCCcccCCHHH
Q 018565 250 -AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNK-FKSVRLML--DMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 250 -~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~-~~~~~~~~--~l~~~~~~~~g~~~t~~e 325 (354)
++++-.++-+++.+.+.++|.++....+| |..++........... ... ........ ++... . ..-......+
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~-gS~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-e-~~~~~~~~~e 247 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAP-GSRVAFDYSLPGSLRD-RLRRPAARKTMRGEDLDRG-E-LVYFGDDPAE 247 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCC-CceEEEeccccHHHHh-cccchhhhhhccccccccc-c-ceeccCCHHH
Confidence 78889999999999999999999999998 7666554321111111 000 00000000 00000 0 0112235789
Q ss_pred HHHHHHHcCCceeEEE
Q 018565 326 WDYVLRQAGFSRYNIT 341 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~ 341 (354)
+..++.+.||......
T Consensus 248 ~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 248 IETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHhcCEEEEecC
Confidence 9999999999888763
|
|
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0015 Score=45.08 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=41.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCccc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLS 100 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~ 100 (354)
-|+..|....++.|..+||+.++++...+.+.++-|...|+|++.... |+ ...|++|+.|
T Consensus 7 ~vL~~l~~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 7 QVLRALAHSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp HHHHHHT--TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred HHHHHHHccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 344455411379999999999999999999999999999999777532 11 2358888754
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0066 Score=59.91 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=47.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHhhhccc------CCCeEEeecCCCCC--------C
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPR--------IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG--------V 245 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~--------~ 245 (354)
...+|||.+||+|.++..+++..+. ..++++|+ +..+..++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999876642 46789998 777666543 12455666665531 2
Q ss_pred CcceEEEecc
Q 018565 246 PEADAAIIKW 255 (354)
Q Consensus 246 ~~~D~i~~~~ 255 (354)
+.||+|+.+=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 3599999863
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.064 Score=45.69 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=86.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC---cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP---EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~---~~D~i~~~~~l 257 (354)
...++.||||-.|.+...+++.++..+++..|+ +..+..|.+ .++++...+|-+.++. ..|++++..+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 344599999999999999999999999999998 666665543 7899999999988543 3888877664
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
.-.....+|.+-.+-|+. --++++ .++. ...+++++|.+.+|.+
T Consensus 95 ---GG~lI~~ILee~~~~l~~-~~rlIL-----QPn~---------------------------~~~~LR~~L~~~~~~I 138 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKG-VERLIL-----QPNI---------------------------HTYELREWLSANSYEI 138 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcC-cceEEE-----CCCC---------------------------CHHHHHHHHHhCCcee
Confidence 345677888887777763 224443 1111 1556677888888888
Q ss_pred eEEEEcCC
Q 018565 338 YNITSIHA 345 (354)
Q Consensus 338 ~~~~~~~~ 345 (354)
+.-.-+..
T Consensus 139 ~~E~ileE 146 (226)
T COG2384 139 KAETILEE 146 (226)
T ss_pred eeeeeecc
Confidence 76555543
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0027 Score=40.33 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=37.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
-+.|..+||+.+|+++..+.+.|+.|...|+++... +.|.++
T Consensus 7 ~~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~-----~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGLTRETVSRTLKRLEKEGLISREG-----GRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC-----CEEEEC
Confidence 478999999999999999999999999999998776 677653
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00069 Score=54.29 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=65.6
Q ss_pred CceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCCC-----CCcceEEEe
Q 018565 190 IETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFDG-----VPEADAAII 253 (354)
Q Consensus 190 ~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~-----~~~~D~i~~ 253 (354)
+.+||++|+|-- ..+..++...|...+...|- .+.++..++ ..++..+..+.... ...||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999954 44555556678888888886 555554433 34444444444331 224999999
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..++.. ++....+.+.+...|+| .|+-++..
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p-~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRP-SGRALLFS 140 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCc-ccceeEec
Confidence 999875 77778999999999999 88766543
|
|
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0016 Score=46.28 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=42.1
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
|+..+.. ++.+..+|+..++++...+.+.|+.|...|+++..+ +.|.+|+.|+.+
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI~~~~-----~~Y~lTekG~~~ 65 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANLNYSTLKKYLKELEEKGLIKKKD-----GKYRLTEKGKEF 65 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST--HHHHHHHHHHHHHTTSEEEET-----TEEEE-HHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCeeCCC-----CEEEECccHHHH
Confidence 4455544 799999999999999999999999999999997755 899999998633
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00095 Score=46.26 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=41.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|..|+..|... ++.|+.+||+.+|++...+.+.|+-|...|+++..+
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 455666666543 899999999999999999999999999999999886
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0022 Score=41.00 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=38.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCcee
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFK 83 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~ 83 (354)
.+..|+..|.+. +++|..+||+.+|++...+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 356788888875 679999999999999999999999999999985
|
... |
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0022 Score=57.06 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=48.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|... ++.|+.|||+.+|+++.-+.|+|+.|+..|++++... .++|++++..
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~---~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGE---SEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEEecHHH
Confidence 4566666653 6899999999999999999999999999999998753 4889999753
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0013 Score=49.87 Aligned_cols=90 Identities=21% Similarity=0.264 Sum_probs=39.5
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeec-h---HHhhhccc---CCCeEEeecCCCCC---C--CcceEEEeccccc
Q 018565 194 VDIGGNDGTTLRTLTKAFPRI---RGINFDL-P---HVVCVAEK---CHGVEHVGGDMFDG---V--PEADAAIIKWVLH 258 (354)
Q Consensus 194 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~d~~~~---~--~~~D~i~~~~~lh 258 (354)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..+++++.+|..+- + +++|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999998888766544 5899998 5 33333332 57899999998762 2 3589988854 23
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
. .+.+..-++.+.+.|+| ||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~-ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAP-GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE-EEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCC-CeEEEEeC
Confidence 2 35667789999999999 88666543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0041 Score=49.83 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=42.3
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
.++|||||.|.++..+++.+|..+++++|. |.+.+.+++ ..++++....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 777776654 2457777766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0024 Score=57.05 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=49.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
+.|++.|...+++.|+.|||+.+|++...+.|+|+.|...|+++++.. ++.|++++...
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~---~~~Y~Lg~~~~ 72 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSAS---DDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC---CCcEEEcHHHH
Confidence 456777765445799999999999999999999999999999998753 37899997653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.02 Score=58.40 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF----P--------------------------------------R 213 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p--------------------------------------~ 213 (354)
+..++....| ..+...++|-.||+|.++++.+... | .
T Consensus 178 Aaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 4445544442 1456899999999999998876521 1 2
Q ss_pred CeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC----cceEEEecccccc-CC-hHHHHHHHHHHHHhcC-
Q 018565 214 IRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP----EADAAIIKWVLHD-WG-DDECIKILKNCKEAIT- 277 (354)
Q Consensus 214 ~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~----~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~- 277 (354)
.+++++|+ +.+++.++. .+++++..+|+.+ +.+ .+|+|+++-.... +. ..+...+.+.+.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36899999 888888775 4679999999987 322 3899888744321 22 2344555555555554
Q ss_pred --CCCceEEEEee
Q 018565 278 --KDKGKVIIVEA 288 (354)
Q Consensus 278 --p~gG~lli~e~ 288 (354)
| |+++.++..
T Consensus 337 ~~~-g~~~~llt~ 348 (702)
T PRK11783 337 QFG-GWNAALFSS 348 (702)
T ss_pred hCC-CCeEEEEeC
Confidence 7 888877653
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0086 Score=41.05 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=39.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
.++|..+||+.+|+++..+.+.|+.|...|+++..+ .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~----~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISRRG----RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC----CCeEEeCC
Confidence 689999999999999999999999999999999876 27787764
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0034 Score=45.39 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.|.++||+.+++++..+++++..|...|+++.... .+|.|.++...
T Consensus 24 ~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G--~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRG--RGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETS--TTSEEEESS-C
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCC--CCCceeecCCH
Confidence 4699999999999999999999999999999987641 14789888654
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0053 Score=55.05 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCceEEEecCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHhhhccc---------------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAF--------------------PRIRGINFDL---PHVVCVAEK--------------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~--------------- 230 (354)
+..+||-||||.|.-..+++..+ +.+.++.+|+ ..++.....
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987777766544 2367899998 345443321
Q ss_pred --------CCCeEEeecCCCC-CC---------CcceEEEeccccccC---ChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 231 --------CHGVEHVGGDMFD-GV---------PEADAAIIKWVLHDW---GDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 231 --------~~~v~~~~~d~~~-~~---------~~~D~i~~~~~lh~~---~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.-+++|...|+++ +. +..++|.+.++++-+ +.....++|.++...++| |..|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~-GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP-GSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC-CcEEEEEcC
Confidence 2358889999988 32 136888777666542 455678999999999999 999999884
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0049 Score=51.78 Aligned_cols=98 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-------CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-------VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-------~~~~D~i~~ 253 (354)
.+.++||+=||+|.++.+.+.+.- -+++.+|. ++.+...++ .+++++...|.+.. ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 478999999999999999888743 37889998 666666554 45788999987651 134999998
Q ss_pred ccccccCChHHHHHHHHHHH--HhcCCCCceEEEEeeeeC
Q 018565 254 KWVLHDWGDDECIKILKNCK--EAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~--~~L~p~gG~lli~e~~~~ 291 (354)
--.... .. ...+++..+. .+|++ + .++|+|....
T Consensus 121 DPPY~~-~~-~~~~~l~~l~~~~~l~~-~-~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAK-GL-YYEELLELLAENNLLNE-D-GLIIIEHSKK 156 (183)
T ss_dssp --STTS-CH-HHHHHHHHHHHTTSEEE-E-EEEEEEEETT
T ss_pred CCCccc-ch-HHHHHHHHHHHCCCCCC-C-EEEEEEecCC
Confidence 654432 21 1356777776 67887 5 5677776554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.034 Score=47.58 Aligned_cols=100 Identities=11% Similarity=0.191 Sum_probs=71.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---------CCcc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---------VPEA 248 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---------~~~~ 248 (354)
+.+++++||||.=+|.-+..++.+.|. -+++.+|+ +...+.+.+ ...|+++.++..+. .+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 446799999999999999999888764 57888888 555444432 68899999987763 1248
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
|.+++-. ..+.....+.++.+++|+ ||.|++-....+.
T Consensus 151 DfaFvDa-----dK~nY~~y~e~~l~Llr~-GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDA-----DKDNYSNYYERLLRLLRV-GGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEcc-----chHHHHHHHHHHHhhccc-ccEEEEeccccCC
Confidence 9888732 233445889999999999 7755554333333
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0041 Score=46.40 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=49.3
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCce---EecCccc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMA---FQQTPLS 100 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~~~ 100 (354)
..++.|++.|... ++.++.+|++.+++++..+++.|+.|...|+|..... |+ |++++..
T Consensus 12 ptRr~IL~lL~~~-e~~~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~----Gr~vyY~Ln~~~ 73 (108)
T PHA00738 12 ILRRKILELIAEN-YILSASLISHTLLLSYTTVLRHLKILNEQGYIELYKE----GRTLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHHc-CCccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEE----CCEEEEEECCCc
Confidence 3678889999872 4799999999999999999999999999999988863 54 6666543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=53.30 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C----
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G---- 244 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~---- 244 (354)
.+++++.+. ..++..+||.=+|.|..+..++++.|+.+++++|. +.++..+++ ..|++++.++|.+ .
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 356666665 55678999999999999999999988789999999 888887765 4589999998875 2
Q ss_pred ---CCcceEEEec
Q 018565 245 ---VPEADAAIIK 254 (354)
Q Consensus 245 ---~~~~D~i~~~ 254 (354)
..++|.|++-
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 1246777663
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0017 Score=46.49 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=48.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC---CceEecCcccc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG---SMAFQQTPLSR 101 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~---~~~y~~t~~~~ 101 (354)
++++|...|... +..+..+|.+.+|++...+++.|+.|...|+++....-.+ -..|++|+.|+
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 467888888764 6999999999999999999999999999999987752211 11388888875
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0043 Score=43.10 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|.+.|.+. +.+|..+||..++++++.++.+|+.|+..|.+++..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 55667664 789999999999999999999999999999999886
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.008 Score=52.70 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
.++...-|.+|+-.|.+ ||.|++||-..+++++..+..-|+-|...|++.+++ +.|++|+.|+.++.
T Consensus 8 ~if~SekRk~lLllL~e--gPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~~-----~~Y~LS~~G~iiv~ 74 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE--GPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQEG-----DRYSLSSLGKIIVE 74 (260)
T ss_pred HHHccHHHHHHHHHHHh--CCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEecC-----CEEEecchHHHHHH
Confidence 34556678889999987 899999999999999999999999999999999997 89999999987665
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.023 Score=48.17 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCceEEEecCCccHHHHH---HHHHC-CCCeEEEeec--hHHhhhccc----CCCeEEeecCCCCC-----C------Cc
Q 018565 189 GIETLVDIGGNDGTTLRT---LTKAF-PRIRGINFDL--PHVVCVAEK----CHGVEHVGGDMFDG-----V------PE 247 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~----~~~v~~~~~d~~~~-----~------~~ 247 (354)
.+..|+++|--.|.-+.. +++.+ ++.+++++|+ ...-..+.+ .+||+++.||..++ + +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 468999999766665554 44555 7889999998 222222333 48999999998763 1 11
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
..+|+. ..-|. .+.+.+.|+.....++| |++++|-|...
T Consensus 112 ~vlVil-Ds~H~--~~hvl~eL~~y~plv~~-G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVIL-DSSHT--HEHVLAELEAYAPLVSP-GSYLIVEDTII 150 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT--T-T-EEEETSHHH
T ss_pred ceEEEE-CCCcc--HHHHHHHHHHhCccCCC-CCEEEEEeccc
Confidence 233333 33343 34577889999999999 99888866554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.015 Score=47.92 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=46.3
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
.+|++.+.+. | ...++++|+++||+.+++++..+.++|..|...|++..... .+|.|.+...
T Consensus 9 yAl~~l~~lA-~---~~~~~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG--~~GGy~Lar~ 70 (164)
T PRK10857 9 YAVTAMLDVA-L---NSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG--PGGGYLLGKD 70 (164)
T ss_pred HHHHHHHHHH-h---CCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC--CCCCeeccCC
Confidence 3455555544 1 12126899999999999999999999999999999997631 1467887754
|
|
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.011 Score=50.52 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=48.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC----CceEecCcccch
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG----SMAFQQTPLSRR 102 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~----~~~y~~t~~~~~ 102 (354)
-.|...|.+. +|+|+.+||+++|+++..+++.|+.|++.|+++......| .-.|++|..+..
T Consensus 14 ~~il~lL~~~-g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 14 ERILELLKKS-GPVSADELAEELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHhcc-CCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 3455566654 8999999999999999999999999999999987632211 224999988764
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.02 Score=53.72 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=73.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc--------CCCeEEeecCCCCCC------C-cceEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDGV------P-EADAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~~------~-~~D~i 251 (354)
.+.+|||+=|=||.++...+.. +. ++|.+|+ ...+..+++ ..+++++.+|.++-. + .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3789999999999999988875 45 8999999 778887775 567899999999821 2 49999
Q ss_pred Eecccccc------CC-hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 252 IIKWVLHD------WG-DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 252 ~~~~~lh~------~~-~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
++--.-.. |+ ..+-..++..+.+.|+| ||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p-gG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP-GGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC-CCEEEEEec
Confidence 98321111 11 22457889999999999 998887653
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.012 Score=47.22 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=44.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
++.++.+||+.+++++..+.+.|+.|...|++.+.. .+.|++|+.|+.+.
T Consensus 21 ~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEK----YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence 789999999999999999999999999999998765 37899999986444
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.03 Score=52.50 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=69.2
Q ss_pred CceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCCC--C--CcceEEEecccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG--V--PEADAAIIKWVL 257 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~--~--~~~D~i~~~~~l 257 (354)
..+|||.-||+|..++.++.+.++ -+++..|+ ++.++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998654 46899999 888777654 24578888888762 1 3499998844 2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
. .+ ..++..+.+.+++ ||.|.+.-
T Consensus 124 G-s~----~~fld~al~~~~~-~glL~vTa 147 (374)
T TIGR00308 124 G-TP----APFVDSAIQASAE-RGLLLVTA 147 (374)
T ss_pred C-Cc----HHHHHHHHHhccc-CCEEEEEe
Confidence 2 11 2678888889998 99999874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.012 Score=43.75 Aligned_cols=65 Identities=23% Similarity=0.413 Sum_probs=49.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
++.++..|... ++.|..+||+.+++++..+.+.|+-|...|+++......+ ...|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 55667777653 6899999999999999999999999999999987752100 12477777765433
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.015 Score=38.68 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=40.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|++.|... +.+|+++||+.+|+++.-++|=|..|...|++.+..
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGVSEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 356677664 799999999999999999999999999999999887
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.015 Score=44.99 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=52.5
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
..+..|+..|... ++.|..+||+.+++++..+.+.++-|...|+++......+ .-.|.+|+.|+.+..
T Consensus 28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ-GSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3445577777664 7899999999999999999999999999999998642111 125889988864443
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.013 Score=45.35 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=41.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
.+..++-.|-+..+|.|+++||+.++.+...+.+-|+-|...|++.+...
T Consensus 28 ~Dv~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 28 LDVEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeee
Confidence 34555555552128999999999999999999999999999999998863
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.059 Score=47.16 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc------------CCCeEEeecCCCCC------CCc-ce
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK------------CHGVEHVGGDMFDG------VPE-AD 249 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~v~~~~~d~~~~------~~~-~D 249 (354)
...+||++|+|+|.-++..+. .....++.-|.+..+...+. +..+.+...+.-.+ .++ +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 457899999999955544444 45778888888766654432 23455554444331 234 89
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+|+.+.+++. +.....+++.++..|.. ++.+++.-..+.
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~~-~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLAK-DGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHhc-CCeEEEEEeccc
Confidence 9999999876 44455777778888887 775555544443
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0082 Score=40.45 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=37.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|.+.|....+|.|..|||+.+|++....+++|..|...|.++...
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3555555422799999999999999999999999999999998754
|
|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0076 Score=40.65 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=38.7
Q ss_pred HcChhhhhhhCCCC--CCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSP--ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~--~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++.|+..|... ++ +|+.+||+.+++++..+.+.++.|...|++++..
T Consensus 7 q~~vL~~l~~~-~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARH-PGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHS-TTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 44556666654 34 8999999999999999999999999999998875
|
... |
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.014 Score=49.98 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=49.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc----eEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM----AFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~~~~l~ 104 (354)
+..|+..|... ++.|+.+||+.+|+++..+.+.|+.|...|+++......+.| .|++|+.++.+.
T Consensus 3 r~~IL~~L~~~-~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 3 KEDILSYLLKQ-GQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 34567777654 789999999999999999999999999999998762100112 378998876433
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.056 Score=42.86 Aligned_cols=106 Identities=11% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEA 248 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~ 248 (354)
.++..+. ..+..+.+|+|.|.|......++.. -...+++++ |..+...+- ..+.+|..-|+++ +..+|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3344444 4456899999999999988877754 346788888 666554431 6788899999998 77776
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
.-++++.+ +.-...+-.+++.-|+. +.+++-.-+-+|+
T Consensus 140 ~~vviFga-----es~m~dLe~KL~~E~p~-nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGA-----ESVMPDLEDKLRTELPA-NTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeeh-----HHHHhhhHHHHHhhCcC-CCeEEEEecCCCc
Confidence 54444322 22223444566667777 7777766554443
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.12 Score=47.35 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=73.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeec-CCCC-CCCc--ceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGG-DMFD-GVPE--ADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~-d~~~-~~~~--~D~i~~~~ 255 (354)
..++..|||==||||.++.+..-. +++++|.|+ ..|++-++. -....+... |... |+++ +|.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456779999999999999987765 789999999 788887765 234444444 8877 7775 89998732
Q ss_pred cc------ccCC-hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 256 VL------HDWG-DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 256 ~l------h~~~-~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.- .--. ++-..++|..+.+.||+ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~-gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP-GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc-CcEEEEecC
Confidence 22 1111 45578899999999999 999887543
|
|
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.014 Score=49.85 Aligned_cols=90 Identities=9% Similarity=0.123 Sum_probs=61.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhcCCCcchHHHHHHh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLE 118 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~ 118 (354)
++.|+..|....+.+...|||.++|+.++.+...++-|+..|++++.+. ++|..|..+..........++.+....
T Consensus 12 ~fqIL~ei~~~qp~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~~gR----~~Y~iTkkG~e~l~~~~~dlr~f~~ev 87 (260)
T COG1497 12 RFQILSEIAVRQPRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEKEGR----GEYEITKKGAEWLLEQLSDLRRFSEEV 87 (260)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHHHhccceeecCC----eeEEEehhHHHHHHHHHHHHHHHHHHH
Confidence 3445555544336779999999999999999999999999999999874 799999998533322222455544433
Q ss_pred -cCchhhhhhhhHHH
Q 018565 119 -SSPVMLAPWHSLGT 132 (354)
Q Consensus 119 -~~~~~~~~~~~l~~ 132 (354)
..-.+...|..++.
T Consensus 88 ~~~l~~~~vw~AIA~ 102 (260)
T COG1497 88 ELVLDYVMVWTAIAK 102 (260)
T ss_pred HHHHhhHHHHHHhhH
Confidence 11123445655554
|
|
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.018 Score=41.88 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=53.0
Q ss_pred HHHHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHH----------HhccCceeeccCCCCCceEecCcccchhh
Q 018565 36 CAVELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRF----------LIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 36 ~a~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~----------L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
.=++..|+..|.+. +.+.++.|||..+|.++..+..-|+- |+.+|++++....+|...|++|+.++.+.
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT~~G~~~~ 87 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLTEKGKRIA 87 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeChhhhhHH
Confidence 45678888888775 46889999999999999999998875 89999993332222345699999886443
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.023 Score=36.98 Aligned_cols=44 Identities=32% Similarity=0.341 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
...+|.+|++.|-||.= ...|++|||+.+|+++..+...||-..
T Consensus 5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis~st~~~~LRrae 48 (53)
T PF04967_consen 5 QREILKAAYELGYFDVP----RRITLEELAEELGISKSTVSEHLRRAE 48 (53)
T ss_pred HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45789999999999972 478999999999999998888887543
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.042 Score=50.44 Aligned_cols=97 Identities=22% Similarity=0.163 Sum_probs=77.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--CC-CcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--GV-PEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~~-~~~D~i~~~~~l 257 (354)
++.+|||.=+|.|.+++.+++... .+++.+|+ |+.+..+++ ..+++.+.||... +. +.+|-|++...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 578999999999999999998643 33999999 888887664 5669999999988 33 459999997643
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~ 293 (354)
...+++..+.+.+++ ||.+...+....+.
T Consensus 267 ------~a~~fl~~A~~~~k~-~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 ------SAHEFLPLALELLKD-GGIIHYYEFVPEDD 295 (341)
T ss_pred ------cchhhHHHHHHHhhc-CcEEEEEeccchhh
Confidence 234778888889998 99988888765443
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.0095 Score=39.79 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=38.7
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++.++..|... ++.|..+||+.+++++..+.++++-|...|++++..
T Consensus 5 q~~iL~~l~~~-~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYEN-GGITQSELAEKLGISRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 34445555554 689999999999999999999999999999998875
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.075 Score=43.18 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=47.7
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
|...+.. +++.+..+||+.+++++..+.++|+-|...|++.... ...+.+|+.++.+.
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~is~stVsr~l~~Le~~GlI~r~~----~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRP----YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec----CCceEECchHHHHH
Confidence 4455554 3689999999999999999999999999999998765 26788888876543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=43.00 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=64.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-----C-CCcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-----G-VPEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-----~-~~~~D~i~~~ 254 (354)
.+.++||+=+|+|.++.+.+.+.- .+++.+|. ......+++ ..++++...|... . .++||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 468999999999999999988753 46788887 555555443 4788888888773 1 2249999997
Q ss_pred ccccc-CChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 255 WVLHD-WGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 255 ~~lh~-~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-..+. +-+....-++-.-..+|+| +|. +++|..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~-~~~-iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP-GAL-IVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC-CcE-EEEEeC
Confidence 66651 1111212222224577998 664 455544
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.024 Score=42.44 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=26.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL 221 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 221 (354)
.+....+|+|||.|.+.--|.+. +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45678999999999988877776 678889995
|
; GO: 0008168 methyltransferase activity |
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.029 Score=36.18 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=38.1
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+++.|... ++.|+.+|++.+++++..+.+.|+.|...|++....
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEee
Confidence 45555543 689999999999999999999999999999998776
|
|
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.027 Score=48.20 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
.+..++..|... ++.+..+||+.+++++..+.+.|+.|...|++++.+. ....|.+|+.|
T Consensus 144 ~~~~IL~~l~~~-g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~~--r~~~~~lT~~G 203 (203)
T TIGR01884 144 EELKVLEVLKAE-GEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKGR--KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC--CccEEEeCCCC
Confidence 345677777654 6899999999999999999999999999999998851 13568888754
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.028 Score=45.68 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=46.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
++++..+||+.++++|..+...++-|...|++++.. .+.+.+|+.|+-+..
T Consensus 23 ~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHHH
Confidence 899999999999999999999999999999999987 489999999875544
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.027 Score=45.59 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=41.4
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.|+++||+..|++|..++++|..|...|+++..... .|.|+|+...
T Consensus 24 ~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~--~GGy~Lar~~ 71 (150)
T COG1959 24 GPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGK--GGGYRLARPP 71 (150)
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCC--CCCccCCCCh
Confidence 38999999999999999999999999999999877521 5789888653
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.03 Score=44.54 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=39.8
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
++.|+++||+.+++++..++++|..|...|++..... ..|.|+++..
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G--~~Ggy~l~~~ 70 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRG--PGGGYQLGRP 70 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeC--CCCCEeccCC
Confidence 5899999999999999999999999999999986531 1367887754
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.027 Score=44.53 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=40.1
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.|.++||+.+++++..++++|+.|...|++..... .+|.|.++...
T Consensus 24 ~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g--~~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRG--PGGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccC--CCCCccCCCCH
Confidence 5999999999999999999999999999999987531 13578776543
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.037 Score=38.31 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=44.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++.++..|.+ ++.+..+||+.+|++...+.+.++.|.+.|+...... ..|++....
T Consensus 2 ~~~il~~L~~--~~~~~~eLa~~l~vS~~tv~~~l~~L~~~g~~i~~~~----~g~~l~~~~ 57 (69)
T TIGR00122 2 PLRLLALLAD--NPFSGEKLGEALGMSRTAVNKHIQTLREWGVDVLTVG----KGYRLPPPI 57 (69)
T ss_pred hHHHHHHHHc--CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecC----CceEecCcc
Confidence 3456777876 7899999999999999999999999999999544431 567665543
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.024 Score=41.59 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=47.2
Q ss_pred hhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCCC--ceEecCcccchhhc
Q 018565 42 IAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQGS--MAFQQTPLSRRLMR 105 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~~~~l~~ 105 (354)
|+..|.. ++....||.+.+ |+++..+.+-|+.|...|++++......+ -.|++|+.|+.|.+
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence 4555655 799999999999 99999999999999999999886421111 24999999876664
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.034 Score=44.69 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=49.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
+..|+..|... +++|..+||+.+++++..+.++++-|...|++++....+ ++ .+.+|+.|+.+.
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~-DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPN-DKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcc-cCCeeEeEEChhHHHHH
Confidence 34556777653 689999999999999999999999999999999875211 22 367777776443
|
|
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.026 Score=38.71 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=44.4
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCC-----CcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 42 IAEAVEEKGSPITLNELASALKC-----DPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~-----~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
|++.|.+.++|++..+|++.++. ++..+++.|++|...|++.+.+ -+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g----~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG----RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC----CcccccCHHHH
Confidence 56677766689999999999854 3589999999999999888766 25567887653
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.067 Score=51.13 Aligned_cols=90 Identities=22% Similarity=0.248 Sum_probs=64.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C-CC---cceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G-VP---EADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~-~~---~~D~i~~ 253 (354)
..+..+++|+=||.|.++..++++ ..+++++++ ++.++.|++ .++++|..++..+ + .. .+|+|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999999 888888765 4669999998887 2 21 4798887
Q ss_pred ccccccCChHHHH-HHHHHHHHhcCCCCceEEE
Q 018565 254 KWVLHDWGDDECI-KILKNCKEAITKDKGKVII 285 (354)
Q Consensus 254 ~~~lh~~~~~~~~-~~L~~~~~~L~p~gG~lli 285 (354)
+-|-.-+. .+++.+.+ ++| ...++|
T Consensus 369 -----DPPR~G~~~~~lk~l~~-~~p-~~IvYV 394 (432)
T COG2265 369 -----DPPRAGADREVLKQLAK-LKP-KRIVYV 394 (432)
T ss_pred -----CCCCCCCCHHHHHHHHh-cCC-CcEEEE
Confidence 32222222 55555554 455 455555
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.082 Score=47.54 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=68.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCCC------CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDG------VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~------~~~~D~i~~ 253 (354)
.+.+|||+=|=+|.++...+.. ...+++.+|. ...++.+++ ..+++++..|+++. ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987664 3347999999 777777764 36899999999872 235999988
Q ss_pred cccc---ccCC-hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVL---HDWG-DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~l---h~~~-~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
--.- ..+. ...-.++++.+.+.|+| ||.|+.+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~-gG~l~~~s 238 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP-GGLLLTCS 238 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCEEEEEc
Confidence 2111 1111 23456889999999999 99876543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.043 Score=46.70 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 28 FTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 28 ~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
+-..++|...++..|++.|... +|+.+.|||+.+|+++.-+..-+..|...|+++..
T Consensus 14 ~dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgLpqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 14 LDVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGLPQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCchhhhhhhHHHHHhcCceeee
Confidence 3456788889999999999875 79999999999999999999999999999999755
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.06 Score=48.80 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=50.1
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD 243 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~ 243 (354)
.+++++.+. ..+...+||.=-|.|..+..+++++|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 456666666 66788999999999999999999999999999999 889877764 5789999988765
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.032 Score=38.09 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=31.7
Q ss_pred CCCCCHHHHHhHcCCC-cccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCD-PSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~-~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|-|-|+.|||+.+|+. +..+.+.|++|...|++....
T Consensus 23 G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccCCC
Confidence 4577999999999996 999999999999999999886
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.076 Score=42.64 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=48.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCC--ceEecCcccchhhc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGS--MAFQQTPLSRRLMR 105 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~~~~l~~ 105 (354)
-++..|...+++.|..+||+.+++++..+.++++-|...|++++....++. -.+.+|+.|+.+..
T Consensus 35 ~vL~~l~~~~~~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 35 VTLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence 345666543346899999999999999999999999999999987531111 13778887764443
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.051 Score=41.83 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=45.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 39 ELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+..|++.|...+++.|++||.+.+ +++..-+.|.|+.|+..|++.+....++...|.++
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN 66 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence 445777786545789999999998 67889999999999999999987643223456543
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.05 Score=35.64 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=33.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKF 81 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~ 81 (354)
.|+..|....+++|+++||+.++++.+-+.+-|..|...|+
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~~ 44 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWGI 44 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 45666744346899999999999999999999999999993
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.045 Score=41.73 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=48.2
Q ss_pred HHcChhhhhh----hCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--eEecCcccchhh
Q 018565 38 VELGIAEAVE----EKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~----~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~~~~l~ 104 (354)
.++.++..|. . +++.|..+||+.+++++..+.+.++-|...|++.+.....+.. .+.+|+.++.+.
T Consensus 26 ~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 26 EELLILYYLGKLENN-EGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKI 97 (109)
T ss_pred HHHHHHHHHHhhhcc-CCcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHH
Confidence 3455555555 3 2689999999999999999999999999999999775321112 266777665433
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.074 Score=50.79 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=64.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHhhhcccCCCeEEeecCCCCCC---C-cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-----PHVVCVAEKCHGVEHVGGDMFDGV---P-EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~---~-~~D~i~~~~~l 257 (354)
......|+|..+|.|.++.+|... | +.+.+. ++.+...-+.. .--+-.|..+++ | .||++.+.+++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCCCcchhheehhhhh
Confidence 345689999999999999999764 3 333332 33332222111 112334555543 4 39999999988
Q ss_pred ccCChH-HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDD-ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~-~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+.+. ....+|-++-|.|+| ||.++|-|
T Consensus 438 s~~~~rC~~~~illEmDRILRP-~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRP-GGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCC-CceEEEec
Confidence 776543 567899999999999 99998854
|
; GO: 0008168 methyltransferase activity |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.12 Score=43.50 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=61.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCC-CC----------Cc-
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFD-GV----------PE- 247 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~-~~----------~~- 247 (354)
+...|+-+|||-=.....+....+++++.-+|+|++++.-++ ..+.+++..|+.+ ++ ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345999999999999999988878899999999988876543 1336789999997 21 11
Q ss_pred ceEEEeccccccCChHHHHHHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNC 272 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~ 272 (354)
.-++++-.++.+++++++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4578888999999999999988876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.047 Score=42.11 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+-+-+--.+.|++.|+.. +|.|+.|+|+..|-++..+.|-|+.|...|++..+.
T Consensus 57 ~la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgRdv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 57 DLARVLSPRNLELLELIAQE-EPASINELAELVGRDVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCcchHHHHHHHHHHHhcCeEEEec
Confidence 34445555678899999875 799999999999999999999999999999998876
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.64 Score=43.63 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCceEEEecCCccHHHHHH--------HHH-------CCCCeEEEeechHH-----hhhcc---------------cCCC
Q 018565 189 GIETLVDIGGNDGTTLRTL--------TKA-------FPRIRGINFDLPHV-----VCVAE---------------KCHG 233 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~~-----~~~a~---------------~~~~ 233 (354)
...+|+|+|||+|..+..+ .++ -|.+++..-|+|.- ..... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999766443 222 25678888887511 11110 0111
Q ss_pred ---eEEeecCCCC-CCCc--ceEEEeccccccCCh---H---------------------------------HHHHHHHH
Q 018565 234 ---VEHVGGDMFD-GVPE--ADAAIIKWVLHDWGD---D---------------------------------ECIKILKN 271 (354)
Q Consensus 234 ---v~~~~~d~~~-~~~~--~D~i~~~~~lh~~~~---~---------------------------------~~~~~L~~ 271 (354)
+.-++|.|.. -+|+ -++++.++.+|-++. . +...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3335678888 3563 799999999985441 0 12234444
Q ss_pred HHHhcCCCCceEEEEeeeeCC
Q 018565 272 CKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 272 ~~~~L~p~gG~lli~e~~~~~ 292 (354)
=.+-|.| ||++++.-.-+++
T Consensus 223 Ra~ELvp-GG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKR-GGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhcc-CcEEEEEEecCCC
Confidence 4566899 9999998766653
|
|
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.062 Score=36.04 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=37.4
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|+..|.. ++.|..+|++.+|+++..+.+.|+.|...|++....
T Consensus 2 il~~l~~--~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 2 ILKLLAE--GELCVCELAEILGLSQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHHhhc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeee
Confidence 4455553 799999999999999999999999999999998665
|
|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.062 Score=43.69 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
++.|+.+||+..++++..++++|..|...|+++.... ..|.|+++..
T Consensus 23 ~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG--~~GGy~La~~ 69 (153)
T PRK11920 23 KLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRG--RNGGVRLGRP 69 (153)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecC--CCCCeeecCC
Confidence 5789999999999999999999999999999987752 1477888754
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.017 Score=43.50 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=43.8
Q ss_pred cceEEEecccc---c-cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhc--cHHhhcccCCccc
Q 018565 247 EADAAIIKWVL---H-DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLML--DMVMMAHTNKGKE 320 (354)
Q Consensus 247 ~~D~i~~~~~l---h-~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~g~~ 320 (354)
.||+|+|.+|. | +|.|+-...+++++++.|+| ||.+++ |+-. +....... .-..... ...-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p-GG~lil-EpQ~---------w~sY~~~~~~~~~~~~n-~~~i~ 68 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP-GGILIL-EPQP---------WKSYKKAKRLSEEIREN-YKSIK 68 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEE-E------------HHHHHTTTTS-HHHHHH-HHH--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC-CCEEEE-eCCC---------cHHHHHHhhhhHHHHhH-HhceE
Confidence 38999997765 2 46788999999999999999 776554 4311 11110000 0000000 11122
Q ss_pred CCHHHHHHHHHH--cCCceeEEEEcC
Q 018565 321 RSLKEWDYVLRQ--AGFSRYNITSIH 344 (354)
Q Consensus 321 ~t~~e~~~ll~~--aGf~~~~~~~~~ 344 (354)
..++++...|.+ .||+..+....+
T Consensus 69 lrP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 69 LRPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp --GGGHHHHHTSTTT---EEEEE---
T ss_pred EChHHHHHHHHhcccceEEEEEcccC
Confidence 345678887777 699998866654
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=34.99 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 53 ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 53 ~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|..+||+.+|+++..+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~is~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGVSRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3599999999999999999999999999998765
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.38 Score=44.72 Aligned_cols=78 Identities=22% Similarity=0.078 Sum_probs=58.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCC---------------------------------------eEE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRI---------------------------------------RGI 217 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 217 (354)
..++..-. +.+...++|==||+|.++++.+...+++ .++
T Consensus 181 aAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444334 4455799999999999999988766532 167
Q ss_pred Eeec-hHHhhhccc-------CCCeEEeecCCCC-CC--CcceEEEeccc
Q 018565 218 NFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV--PEADAAIIKWV 256 (354)
Q Consensus 218 ~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~--~~~D~i~~~~~ 256 (354)
+.|+ +.+++.|+. .+.|+|..+|+.. .. .++|+|+++-.
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 9999 899888774 6889999999887 33 36899988643
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.6 Score=37.95 Aligned_cols=124 Identities=17% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCC-----cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVP-----EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~-----~~D~i~~~~~l 257 (354)
.+++||=||=.- ..+++++-.++..+++++|+ +.+++..++ +-.|+.+..|+..+.| .||+++.--.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468999998443 44555555566679999999 666665543 4559999999999766 3999988542
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
++.+-+.-++.+..++||. .|....+.....+... ..--++++.+.+.||.+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~-~g~~gy~~~~~~~~s~-------------------------~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG-EGCAGYFGFTHKEASP-------------------------DKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S-TT-EEEEEE-TTT--H-------------------------HHHHHHHHHHHTS--EE
T ss_pred --CCHHHHHHHHHHHHHHhCC-CCceEEEEEecCcCcH-------------------------HHHHHHHHHHHHCCcCH
Confidence 3456788899999999997 5533333221111000 00124567777888888
Q ss_pred eEEEE
Q 018565 338 YNITS 342 (354)
Q Consensus 338 ~~~~~ 342 (354)
.+++|
T Consensus 174 ~dii~ 178 (243)
T PF01861_consen 174 TDIIP 178 (243)
T ss_dssp EEEEE
T ss_pred HHHHh
Confidence 88766
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.73 Score=41.42 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=98.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC--CCCeEEEeechHHhhhccc----------------------------CCCeEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF--PRIRGINFDLPHVVCVAEK----------------------------CHGVEH 236 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----------------------------~~~v~~ 236 (354)
......|+.+|||.-.....+...+ +...++-+|.|.++..--. ..+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3467899999999999999999877 7888999998776653210 234444
Q ss_pred eecCCCC--CC----------Cc-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhh
Q 018565 237 VGGDMFD--GV----------PE-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSV 303 (354)
Q Consensus 237 ~~~d~~~--~~----------~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~ 303 (354)
...|..+ .+ .+ .-+++.-.+|-++++++...+++-+.+.++. +.+++.|.+.+.+.. .
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~--a~fv~YEQi~~~D~F-g------ 235 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN--AHFVNYEQINPNDRF-G------ 235 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc--ccEEEEeccCCCChH-H------
Confidence 5555543 11 01 2355666788888899999999999998864 788889988865443 1
Q ss_pred hhhccHHhh--cccCCc--ccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 304 RLMLDMVMM--AHTNKG--KERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 304 ~~~~~l~~~--~~~~~g--~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
..|--+.. ...-.| .-.|.+..++-+.++||+.+.+..+
T Consensus 236 -~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 236 -KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred -HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 11211111 110011 2237888888999999999988765
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.081 Score=44.10 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=41.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|++.|... |++|.++||+.+|++...++++|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEee
Confidence 4488888765 799999999999999999999999999999998554
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.052 Score=36.43 Aligned_cols=37 Identities=19% Similarity=0.436 Sum_probs=34.2
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+++++..+||+.+|+++..+...++-|...|+++...
T Consensus 20 ~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 3799999999999999999999999999999999876
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.063 Score=37.27 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=43.9
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+..|+..+.. ++.+..+|++.+|++...+.+.|+.|.+.|++...... ....|++|+
T Consensus 9 ~~~il~~l~~--~~~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~-~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLE--GPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREG-RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHH--CCcCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEec-cEEEEEeCC
Confidence 3446666665 45999999999999999999999999999999876520 124566665
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.046 Score=43.14 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++.|+.+||+++|+++..+.++|+.|...|++..... ..+.|.+..
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g--~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRG--VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCC--CCCChhhcC
Confidence 6899999999999999999999999999999986531 135676654
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.038 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCce
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFF 82 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l 82 (354)
|+|-+|||+.+|+.+.-++|.|.-|...|++
T Consensus 2 ~mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 5788999999999999999999999999875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.32 Score=44.69 Aligned_cols=93 Identities=18% Similarity=0.142 Sum_probs=65.4
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecC---CCCCCCc-ceEEEeccccccC
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGD---MFDGVPE-ADAAIIKWVLHDW 260 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d---~~~~~~~-~D~i~~~~~lh~~ 260 (354)
..++.+|+=+|.| .|+++..+++..- .+++++|. ++-.+.+++...-.++... ..+...+ +|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 5678888888855 6688888888765 89999999 7777777774444444433 2222222 899887654 2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
..+....++|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~-~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR-GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc-CCEEEEECCCC
Confidence 336667778899 99999987663
|
|
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.091 Score=42.08 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++|++.+.++.+ .. +.+.+.++||+.+|+++..+++.|..|...|+++..... .|.|.++.
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~--~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGK--NGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCC--CCCeeecC
Confidence 355555555543 22 257899999999999999999999999999999877621 35687764
|
|
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.059 Score=39.88 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=40.3
Q ss_pred HHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 55 LNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 55 ~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
+.+||+.+|+++..+.+.|+-|...|++.... +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~is~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNVSPPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHH
Confidence 56899999999999999999999999999987 36799998876443
|
iron dependent repressor |
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.098 Score=34.59 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+ |..+||+.+|+++..+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 455 899999999999999999999999999998765
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.062 Score=40.76 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=42.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|... ++.|..+||+.+|+++..+.+.++.|...|++....
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceE
Confidence 456788888774 689999999999999999999999999999998443
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.078 Score=38.78 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=43.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+.|+.+|... +|-.+.-||..++++...+...|+-|..+|++++..
T Consensus 8 l~~~IL~hl~~~-~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 8 LDLKILQHLKKA-GPDYAKSIARRLKIPLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred hHHHHHHHHHHH-CCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEec
Confidence 456677788764 799999999999999999999999999999999997
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.21 Score=46.28 Aligned_cols=108 Identities=15% Similarity=0.282 Sum_probs=73.7
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHhhhccc-------------CCCeEEeecCC
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL---PHVVCVAEK-------------CHGVEHVGGDM 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------------~~~v~~~~~d~ 241 (354)
.+.+.+. ..+.....|+|+|.|.....++.....-.-+|+.+ |.-+...+. ...++.+.++|
T Consensus 183 si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 183 SIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3344444 66778999999999999988777544444455554 333332221 45688889999
Q ss_pred CCC------CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 242 FDG------VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 242 ~~~------~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
..+ .+.+++|+.+++... ++...+ +.++..-+++ |.+++-.+...+
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fd--p~L~lr-~~eil~~ck~-gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFD--PELKLR-SKEILQKCKD-GTRIISSKPLVP 312 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCC--HHHHHh-hHHHHhhCCC-cceEeccccccc
Confidence 884 245999999998753 444333 4477777888 888888777766
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.27 Score=44.37 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=41.5
Q ss_pred CCceEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeec----CCCCCC----CcceE
Q 018565 189 GIETLVDIGGNDGTT-LRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGG----DMFDGV----PEADA 250 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~----d~~~~~----~~~D~ 250 (354)
...++||||+|.... .+--++.+ ++++++.|+ +..++.|++ .++|+++.. +++... ..||+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 467999999998744 33334444 899999999 888887764 578888754 455532 13999
Q ss_pred EEeccccccCC
Q 018565 251 AIIKWVLHDWG 261 (354)
Q Consensus 251 i~~~~~lh~~~ 261 (354)
.+|+-.+|.-.
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99988888633
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.1 Score=42.00 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=70.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC---cceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR--IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP---EADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~---~~D~i 251 (354)
-.++.+|||.-++.|.=+..+++..++ ..++.+|. ++-+...++ ..++.....|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 557799999999999999999997765 55689998 544444432 3446677766543 1 22 28998
Q ss_pred Eec------ccc-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEeeee
Q 018565 252 IIK------WVL-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 252 ~~~------~~l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
++- .++ ..+...+. .++|+.+.+.||| ||.|+.+.-.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~-GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP-GGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEccCC
Confidence 872 222 22333321 4789999999999 99888865433
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.84 Score=43.65 Aligned_cols=102 Identities=20% Similarity=0.159 Sum_probs=73.1
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-----cCCCeEEeecCCCC-CCC--cceEEEeccccccCC
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-----KCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWG 261 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~ 261 (354)
-+++-+|||.-.+...+-+.. .-.++.+|. +-+++... ......+...|+.. .++ +||+++....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 399999999998888877642 224566776 44443332 25667888888888 665 599999999998753
Q ss_pred hH--------HHHHHHHHHHHhcCCCCceEEEEeee--eCCCC
Q 018565 262 DD--------ECIKILKNCKEAITKDKGKVIIVEAI--IEEDD 294 (354)
Q Consensus 262 ~~--------~~~~~L~~~~~~L~p~gG~lli~e~~--~~~~~ 294 (354)
.+ .+...+..++++|+| ||+.+.+... .+..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~-~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP-GGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc-CCEEEEEEeeeeccCCC
Confidence 22 344568899999999 9998888774 44443
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.1 Score=36.65 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=41.1
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceee-ccCCCCCceEecCccc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKE-VPTSQGSMAFQQTPLS 100 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~-~~~~~~~~~y~~t~~~ 100 (354)
+.|+...+||+.++.++.-++.-+..|.++|+|+. ..+ .+.|..|..+
T Consensus 21 ~~PVgSk~ia~~l~~s~aTIRN~M~~Le~lGlve~~p~~---s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGRSPATIRNEMADLEELGLVESQPHP---SGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCCChHHHHHHHHHHHHCCCccCCCCC---CCCCCcCHHH
Confidence 47999999999999999999999999999999985 443 3677777665
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.1 Score=43.52 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=54.0
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCC---C-CceEecCccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQ---G-SMAFQQTPLS 100 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~---~-~~~y~~t~~~ 100 (354)
..+|.-..++.|++.|...+++.|+.+|++.+ +++..-+.|.|+.|...|++....... + +..|++++.+
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~is~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~ 79 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDVPQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEED 79 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccce
Confidence 45666778888999997643459999999999 688899999999999999999765210 1 2347787755
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.027 Score=45.02 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=37.2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.|+|++.+++.|+.-++-...++.+++.||| ||+|-|.-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp-~G~LriAv 86 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP-GGKLRIAV 86 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc-CcEEEEEc
Confidence 48999999999999999999999999999999 99998864
|
|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.1 Score=36.63 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
-+.|-++||..+|++...+.+.|+.|...|+++..+ +.+.....
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~-----~~i~I~d~ 70 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKR-----GKIIILDP 70 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET-----TEEEESSH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcC-----CEEEECCH
Confidence 488999999999999999999999999999999887 66665543
|
... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.067 Score=45.44 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--c-----ceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP--E-----ADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~--~-----~D~i~~ 253 (354)
....|+|.-||.|...+.++.++| .++.+|+ |.-+..|+. .+||+|++||+++-+. . +|++++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 457899999999999998888866 5778887 777777764 5799999999988321 2 445555
Q ss_pred ccccccCChHHHHHHHHHHHHhcCC
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
+-.-.. +.....-+-.+...++|
T Consensus 172 sppwgg--p~y~~~~~~DL~~~~~p 194 (263)
T KOG2730|consen 172 SPPWGG--PSYLRADVYDLETHLKP 194 (263)
T ss_pred CCCCCC--cchhhhhhhhhhhhcch
Confidence 432221 22334445556666666
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.61 Score=44.91 Aligned_cols=124 Identities=16% Similarity=0.298 Sum_probs=82.8
Q ss_pred ChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCcc-CCCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-h
Q 018565 149 DVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVF-DGIETLVDIGGNDGTTLRTLTKA----FPRIRGINFDL-P 222 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~ 222 (354)
..|+.+++++-.-..|++|.. ..+.+..+++. +....|.-+|+|.|-+..+..+. ...++.++++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 457777888876666666543 34555554322 23567888999999887765542 35667788887 7
Q ss_pred HHhhhccc------CCCeEEeecCCCC-CCC--cceEEEeccccccCChH-HHHHHHHHHHHhcCCCCc
Q 018565 223 HVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDD-ECIKILKNCKEAITKDKG 281 (354)
Q Consensus 223 ~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~-~~~~~L~~~~~~L~p~gG 281 (354)
+++...+. ..+|+++..|+.+ ..| .+|+++. ..|..|.|. --.+-|..+-+.||| +|
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp-dg 472 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP-DG 472 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC-Cc
Confidence 76665543 7899999999998 443 3777654 445555443 235568888889999 75
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=92.87 E-value=2 Score=35.43 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=72.7
Q ss_pred EecCCccHHHHHHHHHCC---CCeEEEeec-hHHhhhccc---------CCCeEEee-cCCCC---CC----CcceEEEe
Q 018565 195 DIGGNDGTTLRTLTKAFP---RIRGINFDL-PHVVCVAEK---------CHGVEHVG-GDMFD---GV----PEADAAII 253 (354)
Q Consensus 195 DvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~~-~d~~~---~~----~~~D~i~~ 253 (354)
=||=|.-.++..|++.+. ++.+|.+|- .++...... ...+.+.. .|..+ .. ..||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788899999877 444566665 333333321 33444433 25544 12 23999988
Q ss_pred ccccccC-----------ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 254 KWVLHDW-----------GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 254 ~~~lh~~-----------~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
++.---. ...-...+++.+.+.|++ +|.+.|.=..-.+ ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~-~G~IhVTl~~~~p----------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP-DGEIHVTLKDGQP----------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCC----------------------------Cc
Confidence 7653320 122456788999999999 9999884321111 11
Q ss_pred HHHHHHHHHHcCCceeEEEEcC
Q 018565 323 LKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
.=.+..+.+++||...+..+..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cccHHHHHHhcCCEEEEEecCC
Confidence 1123466778899988887763
|
|
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.17 Score=35.59 Aligned_cols=44 Identities=5% Similarity=0.191 Sum_probs=39.0
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|=|.|... +-.++.+||..++++++.++.+|..++.+|-+++..
T Consensus 7 lRd~l~~~-gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHc-CcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 44667664 789999999999999999999999999999998875
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.16 Score=43.71 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=45.7
Q ss_pred hhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 43 AEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 43 f~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
...+.+. ..+|..+||+.+++++..+.+.|+.|...|++++.... ....+++|+.++.+
T Consensus 13 lg~l~~~-~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~-r~~~v~LTekG~~l 71 (217)
T PRK14165 13 LGAVNNT-VKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVP-RGQLITITEKGLDV 71 (217)
T ss_pred HhccCCC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcC-CceEEEECHHHHHH
Confidence 3345432 46899999999999999999999999999999887421 13568888887633
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.4 Score=43.01 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=56.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHhhhccc-----CCCeEEeecCCCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHVVCVAEK-----CHGVEHVGGDMFD 243 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~ 243 (354)
..+.++.+. ..+....||.-=|.|..+..+++++|... .+++|. |.+++.+++ .+|+.++.++|.+
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 456666666 66779999999999999999999998665 999999 999998876 6799999998765
|
|
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.34 Score=40.16 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc--CCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 27 GFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL--KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 27 ~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~--g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
..|...+++..+.+.= +..+.++||+++ ++++.-++.-|+.|..+|++++.+ +|.|..|..+-
T Consensus 22 ~~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~----~g~y~~t~~~l 86 (171)
T PF14394_consen 22 SSWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDG----DGKYVQTDKSL 86 (171)
T ss_pred hhhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECC----CCcEEEeccee
Confidence 3566666666554431 333999999999 999999999999999999999998 48999997653
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.32 Score=43.34 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=67.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C--CCcce
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G--VPEAD 249 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~--~~~~D 249 (354)
..++.+++-||+|.|......++. +.+ .+...|+ ..+++..+. .++|.+..||-+. . ..+||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999988876 544 3566776 555554432 6899999998765 2 34599
Q ss_pred EEEeccccccCChH--HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 250 AAIIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 250 ~i~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+|+.-.-=-.-|.. --..++.-+.++||| +|.+.+...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~-dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG-DGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC-CcEEEEecc
Confidence 99874311000100 123456667889999 998887653
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.11 Score=50.64 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=54.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCCC
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHGE 108 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~ 108 (354)
.+..|+..|... ++.|..+||+.+|+++..+.+.++-|.+.|+++..+.. ...|.+|+.|+ ++....|
T Consensus 7 ~e~~vL~~L~~~-~~~s~~eLA~~l~l~~~tVt~~i~~Le~kGlV~~~~~~--~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 7 NEKKVLKALKEL-KEATLEELAEKLGLPPEAVMRAAEWLEEKGLVKVEERV--EEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEEEeee--EEEEEECHHHHHHHHhcCH
Confidence 455666677653 68999999999999999999999999999999877521 24699999997 5555554
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.19 Score=39.94 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=40.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
..|++.|.. |+.|..|||+.+|++-...+-.|..|...|.+.+...
T Consensus 14 ~eILE~Lk~--G~~TtseIAkaLGlS~~qa~~~LyvLErEG~VkrV~~ 59 (165)
T PHA02943 14 IKTLRLLAD--GCKTTSRIANKLGVSHSMARNALYQLAKEGMVLKVEI 59 (165)
T ss_pred HHHHHHHhc--CCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEEEee
Confidence 346677743 7899999999999999999999999999999988863
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.24 Score=36.68 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=38.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
.++|..|||+.+|+++..+.|.|+.|...|++...+. -+.|..+
T Consensus 46 ~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~---~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGM---MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecC---CceeecC
Confidence 6999999999999999999999999999999987752 2566665
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.17 Score=41.39 Aligned_cols=46 Identities=11% Similarity=-0.028 Sum_probs=40.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|+++|... +.+|-++||+.+|++...++++|..|...|++.+..
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGIKLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeee
Confidence 4577877753 799999999999999999999999999999996554
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=92.15 E-value=1.1 Score=41.57 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=59.4
Q ss_pred cCCCceEEEecCCccHHHHHHHH--------HC--------CCCeEEEeechHH-----hhhcc-------cCCC--eEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTK--------AF--------PRIRGINFDLPHV-----VCVAE-------KCHG--VEH 236 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~~-----~~~a~-------~~~~--v~~ 236 (354)
.+..-+|+|+||.+|..+..+.. ++ |.+++..-|+|.- ..... .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999988876543 12 3457778887511 11111 1122 344
Q ss_pred eecCCCCC-CC--cceEEEeccccccCC-------h------------------H------------HHHHHHHHHHHhc
Q 018565 237 VGGDMFDG-VP--EADAAIIKWVLHDWG-------D------------------D------------ECIKILKNCKEAI 276 (354)
Q Consensus 237 ~~~d~~~~-~~--~~D~i~~~~~lh~~~-------~------------------~------------~~~~~L~~~~~~L 276 (354)
+++.|... +| +-|+++.++.||-++ + + +...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899983 55 389999999998542 1 1 1223333334558
Q ss_pred CCCCceEEEEeeeeCC
Q 018565 277 TKDKGKVIIVEAIIEE 292 (354)
Q Consensus 277 ~p~gG~lli~e~~~~~ 292 (354)
+| ||++++.-...++
T Consensus 174 v~-GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VP-GGRMVLTFLGRDE 188 (334)
T ss_dssp EE-EEEEEEEEEE-ST
T ss_pred cc-CcEEEEEEeeccc
Confidence 99 9999998887776
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.27 Score=37.84 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=45.4
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 35 KCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 35 ~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..+...|.+.+.+. |.+|+.+++..+|++...+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGASRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeCC
Confidence 345667788888876 799999999999999999999999999999999887
|
|
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=1 Score=37.73 Aligned_cols=64 Identities=11% Similarity=-0.036 Sum_probs=49.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhhc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLMR 105 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~~ 105 (354)
..++..|... +++|..+||+.+++++..+.++++-|...|++.+....+ +. ...+|+.|+.+..
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~-DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKED-DKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCC-CCCeeEEEECHHHHHHHH
Confidence 4566677654 689999999999999999999999999999999774211 22 3778888765443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.22 Score=46.44 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDM 241 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~ 241 (354)
..+++.++ ..+. ++||+=||.|.++..+++.. -++++++. +++++.|+. .++++|..++.
T Consensus 187 ~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 187 EQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 34444444 3333 79999999999999999874 47899998 888888774 57899987654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.37 Score=40.15 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=48.9
Q ss_pred cChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 40 LGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 40 lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
+.++-.|... ++++|..+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.|+.+..
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 4455556432 25789999999999999999999999999999998753211 113778888765443
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.4 Score=41.54 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=62.2
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHH----HHHHHHHC---CCCeEEEeechH-----Hhhhcc--------c-CCCe
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTT----LRTLTKAF---PRIRGINFDLPH-----VVCVAE--------K-CHGV 234 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~----~~~l~~~~---p~~~~~~~D~~~-----~~~~a~--------~-~~~v 234 (354)
.+.|++.+. -...-+|+|+|.|.|.- ...|+.+. |.+++|+++.|. .++.+. . +-..
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f 176 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF 176 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence 356677766 45778999999999954 33444432 778899999732 122111 1 3344
Q ss_pred EEeec--CCCCCC-------Cc--ceEEEeccccccCChH------HHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 235 EHVGG--DMFDGV-------PE--ADAAIIKWVLHDWGDD------ECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 235 ~~~~~--d~~~~~-------~~--~D~i~~~~~lh~~~~~------~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+|... +-.++. .+ +=+|-+..-||++.++ ....+|+.++ .|+| -.++++|.-.+
T Consensus 177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P--~vvv~~E~ea~ 247 (374)
T PF03514_consen 177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP--KVVVLVEQEAD 247 (374)
T ss_pred EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC--CEEEEEeecCC
Confidence 44442 211111 11 2234455667887532 2445777665 6898 35666665543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.27 Score=38.87 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=35.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
|+.|.+|||.+.|++.+.+.--|.++++.|-|.+...
T Consensus 5 Ga~T~eELA~~FGvttRkvaStLa~~ta~Grl~Rv~q 41 (155)
T PF07789_consen 5 GAKTAEELAGKFGVTTRKVASTLAMVTATGRLIRVNQ 41 (155)
T ss_pred CcccHHHHHHHhCcchhhhHHHHHHHHhcceeEEecC
Confidence 8999999999999999999999999999999998875
|
The region in question is approximately 150 amino acid residues long. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.17 Score=48.62 Aligned_cols=70 Identities=9% Similarity=0.095 Sum_probs=57.5
Q ss_pred HHHcChhhhhhhCCCC-CCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCCCc
Q 018565 37 AVELGIAEAVEEKGSP-ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHGEN 109 (354)
Q Consensus 37 a~~lglf~~L~~~~~~-~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~~ 109 (354)
+.+..|+..|... ++ .+.++||+.+|+++..+.+.+.-|.+.|+++..... ...|.+|+.|+ ++..+.|.
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~~~~~v~~~~~~L~~kg~v~~~~~~--~~~~~LT~eG~~~l~~G~PE 74 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGLDHNEVVGVIKSLHGFRYVDAQDIK--RETWVLTEEGKKYAAEGSPE 74 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEE--EEEEEECHHHHHHHHcCCHH
Confidence 4567788888764 44 799999999999999999999999999999766532 46799999996 77777664
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.49 Score=41.47 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=49.1
Q ss_pred HHHhcCCCccCCCc--eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------CCCeEEeec
Q 018565 178 AIIEGCPEVFDGIE--TLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------CHGVEHVGG 239 (354)
Q Consensus 178 ~~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~ 239 (354)
.+++.+. +.++. +|||.=+|+|..+..++.+ +++++.++. |.+....+. ..|++++.+
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3444444 44544 9999999999999999987 677999998 544333221 146777777
Q ss_pred CCCC---CCC-cceEEEec
Q 018565 240 DMFD---GVP-EADAAIIK 254 (354)
Q Consensus 240 d~~~---~~~-~~D~i~~~ 254 (354)
|..+ ..+ .||+|++-
T Consensus 153 da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLD 171 (250)
T ss_pred cHHHHHhhCCCCCcEEEEC
Confidence 7665 122 47887763
|
|
| >PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.15 Score=35.53 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=37.0
Q ss_pred hhhhhhhCCCCCCHHHHHhHc---CC--CcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASAL---KC--DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~---g~--~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+|..... +.+++.++|+.+ +. ..+++..++.+|.++|++++.+
T Consensus 16 ~~~~~~~--~~i~l~~ia~~l~~~~~k~~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 16 LFESSPD--KSISLNEIADKLISENVKTQRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHHCCC--TEEEHHHHHHHCHHHCCHHHCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHHCCC--CcccHHHHHHHHcccccccccchhhHHHHHHHHhCceeecC
Confidence 3444443 789999999999 99 8999999999999999999965
|
Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.8 Score=38.90 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=74.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHhhhcccCCCeEEeecCCCC-C----CCcceEEEeccccccCCh--
Q 018565 192 TLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHVVCVAEKCHGVEHVGGDMFD-G----VPEADAAIIKWVLHDWGD-- 262 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~----~~~~D~i~~~~~lh~~~~-- 262 (354)
+++|+=||.|.+...+.+.. .+ +..+|. +..++..+..-.-.+..+|+.+ . .+++|+++.......++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999998888763 44 567887 6666655542111255667766 2 345899998766654431
Q ss_pred ------HHHHHHHH---HHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc
Q 018565 263 ------DECIKILK---NCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 263 ------~~~~~~L~---~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
+....++. ++.+.++| +++++|.+..-... . ......++.+.|++.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P---~~~v~ENV~g~~~~--------------------~--~~~~~~~i~~~l~~~ 134 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKP---KYFLLENVKGLLTH--------------------D--NGNTLKVILNTLEEL 134 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCC---CEEEEEcCcchhcc--------------------C--chHHHHHHHHHHHhC
Confidence 11122232 33344566 67888866432111 1 112467788889999
Q ss_pred CCceeEE
Q 018565 334 GFSRYNI 340 (354)
Q Consensus 334 Gf~~~~~ 340 (354)
||.+...
T Consensus 135 GY~~~~~ 141 (275)
T cd00315 135 GYNVYWK 141 (275)
T ss_pred CcEEEEE
Confidence 9987543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.14 Score=37.48 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=42.7
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
+++..+.-|.-.++++-......++.|+..|++...... ....|.+|+.|+-|
T Consensus 29 ~~~~~~Tri~y~aNlny~~~~~yi~~L~~~Gli~~~~~~-~~~~y~lT~KG~~f 81 (95)
T COG3432 29 EGGIGITRIIYGANLNYKRAQKYIEMLVEKGLIIKQDNG-RRKVYELTEKGKRF 81 (95)
T ss_pred CCCCCceeeeeecCcCHHHHHHHHHHHHhCCCEEeccCC-ccceEEEChhHHHH
Confidence 378899999999999999999999999999966666510 01169999999744
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=90.81 E-value=1.1 Score=40.37 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=69.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC----CCc-ceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG----VPE-ADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~~~-~D~i~~ 253 (354)
..++.+|||+-++.|.-+..+++... ...++..|+ ++-+...++ ..++.....|.... .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34678899999999999999999876 567889998 555554432 46677776666552 233 899887
Q ss_pred cc------ccccCCh-------HH-------HHHHHHHHHHhc----CCCCceEEEEee
Q 018565 254 KW------VLHDWGD-------DE-------CIKILKNCKEAI----TKDKGKVIIVEA 288 (354)
Q Consensus 254 ~~------~lh~~~~-------~~-------~~~~L~~~~~~L----~p~gG~lli~e~ 288 (354)
-- ++..-++ ++ =.++|+++.+.+ || ||+++-+.-
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~-gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP-GGRLVYSTC 220 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE-EEEEEEEES
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC-CCeEEEEec
Confidence 21 2221111 11 147899999999 99 998887653
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.4 Score=42.30 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=50.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
.|-.++-.|-.. |+.|+.|||+.+|+|...+..+|+-|...|+++..... +..|+.-+....+..
T Consensus 17 yEa~vY~aLl~~-g~~tA~eis~~sgvP~~kvY~vl~sLe~kG~v~~~~g~--P~~y~av~p~~~i~~ 81 (247)
T COG1378 17 YEAKVYLALLCL-GEATAKEISEASGVPRPKVYDVLRSLEKKGLVEVIEGR--PKKYRAVPPEELIER 81 (247)
T ss_pred HHHHHHHHHHHh-CCccHHHHHHHcCCCchhHHHHHHHHHHCCCEEeeCCC--CceEEeCCHHHHHHH
Confidence 344445555443 79999999999999999999999999999999987421 567887776554443
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.3 Score=39.64 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+..|++.|..+ +..|..+||+++|+++..+.+=++-|...|++....
T Consensus 9 ~~D~~Il~~Lq~d-~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~ 57 (153)
T PRK11179 9 NLDRGILEALMEN-ARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTR 57 (153)
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEE
Confidence 3577888999874 799999999999999999999999999999998543
|
|
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.3 Score=40.23 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
-..+..|++.|.++ +..|..+||+++|+++..+.+=++-|...|+++..
T Consensus 13 D~~D~~IL~~Lq~d-~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 13 DRIDRNILNELQKD-GRISNVELSKRVGLSPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34688899999874 79999999999999999999999999999999854
|
|
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.36 Score=41.03 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCCCHHHHHhHcCCC-cccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCD-PSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~-~~~l~~lL~~L~~~g~l~~~~ 86 (354)
-|.|+.|||+.+|++ +..+.+.|+.|...|+++..+
T Consensus 24 ~~~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGLRSPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCC
Confidence 478999999999998 999999999999999999887
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.28 Score=34.50 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=42.3
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..+++.++.+ ..+++..+|+..+|.|++.+...++.|...|++.+..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGIDPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCCCchHHHHHHHHHHHCCCEEEEE
Confidence 456677777753 2688999999999999999999999999999999886
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.3 Score=47.18 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCCCc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHGEN 109 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~~ 109 (354)
..+..|+..|.+..+..+.++||+.+|+++..+.+.+.-|.+.|+++..... ...|.+|+.|+ ++..+.|.
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~~~~~v~~~~~~L~~kg~v~~~~~~--~~~~~LT~eG~~~~~~G~PE 77 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNIDHQKVVGAIKSLESANYITTEMKK--SNTWTLTEEGEDYLKNGSPE 77 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEE--EEEEEECHHHHHHHHcCCHH
Confidence 3556677777652257899999999999999999999999999999766532 36799999996 77777764
|
|
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.4 Score=36.77 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=50.5
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
+..+..++..|... ++.+..+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.++.+.
T Consensus 21 t~~q~~~L~~l~~~-~~~~~~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 21 TPPQYQVLLALYEA-GGITVKELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred CHHHHHHHHHHHHh-CCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 44566677777663 3444499999999999999999999999999988863211 12478888876433
|
|
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.28 Score=43.46 Aligned_cols=49 Identities=29% Similarity=0.360 Sum_probs=44.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
|..+.+.|.+.||.++-+||..++|++..-+.|.|+-|..+|++++...
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lglsktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGLSKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCCChHHHHHHHHHHHhCCceEEEEe
Confidence 4667888887778899999999999999999999999999999998864
|
|
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.39 Score=38.83 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=43.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..+++.|..+ ++.+..+||+++|+++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~d-~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQED-ARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEE
Confidence 567788889874 789999999999999999999999999999998775
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.41 Score=40.62 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+.|++|+|+++|++..-.+|.|.+|++.|+++.+-
T Consensus 172 ~~~Taeela~~~giSRvTaRRYLeyl~~~~~l~a~i 207 (224)
T COG4565 172 QELTAEELAQALGISRVTARRYLEYLVSNGILEAEI 207 (224)
T ss_pred CccCHHHHHHHhCccHHHHHHHHHHHHhcCeeeEEe
Confidence 699999999999999999999999999999998663
|
|
| >COG3413 Predicted DNA binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.47 E-value=0.51 Score=40.73 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 29 TNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 29 ~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
.+..+|+.|+++|-||. + ..+++.|||+.+|+++..+...||-..
T Consensus 159 rQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGISkst~~ehLRrAe 203 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGISKSTLSEHLRRAE 203 (215)
T ss_pred HHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46679999999999997 2 578999999999999988888777543
|
|
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.4 Score=36.88 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.++|++|||+.+.++++.++.+|+-|...|+++...
T Consensus 18 ~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeC
Confidence 578999999999999999999999999999999886
|
|
| >PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.34 Score=37.53 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=47.3
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+.-+.-|++.|.+.+++.|+++|-+.+ +++..-+.|.|+.|...|++.+....++...|....
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~ 74 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC
Confidence 445667888887655799999998888 456678999999999999999886533344676664
|
These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B .... |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.36 E-value=4.3 Score=30.94 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=58.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCC----CcceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGV----PEADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----~~~D~i~~~~~lh~~~~~~ 264 (354)
..++|++||-|.=......++++ ++.++..|+.+- .+ ...++++..|+++|- .++|+|.... |+++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pppE 82 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPPE 82 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCHH
Confidence 45699999988776655555554 478899998332 33 367889999999962 3589988755 4556
Q ss_pred HHHHHHHHHHhcCCCCceEEEE
Q 018565 265 CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~ 286 (354)
....+-.+.++++- .++|.
T Consensus 83 l~~~ildva~aVga---~l~I~ 101 (129)
T COG1255 83 LQSAILDVAKAVGA---PLYIK 101 (129)
T ss_pred HHHHHHHHHHhhCC---CEEEE
Confidence 66666667776643 45554
|
|
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.68 Score=35.89 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcC-CCcccHHHHHHHHhccCceeeccCCC--CCce
Q 018565 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALK-CDPSLLQRIMRFLIHLKFFKEVPTSQ--GSMA 93 (354)
Q Consensus 17 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g-~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~ 93 (354)
.....++.+.+=|..-+|+.+.+ |+.-..||-..++ +++.-|.+-|+.|...|++.+..-.. .--.
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~Pprve 80 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGISPKMLSRRLKELEEDGLVERVVYPEEPPRVE 80 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHccccCHHHHHHHHHHHHHCCCEEeeecCCCCceeE
Confidence 46677788888888777766543 5788888888888 99999999999999999998875211 1124
Q ss_pred EecCcccchhhc
Q 018565 94 FQQTPLSRRLMR 105 (354)
Q Consensus 94 y~~t~~~~~l~~ 105 (354)
|++|+.++.|.+
T Consensus 81 Y~LT~~G~~L~~ 92 (120)
T COG1733 81 YRLTEKGRDLLP 92 (120)
T ss_pred EEEhhhHHHHHH
Confidence 999988876554
|
|
| >PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4 | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.35 Score=33.91 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=26.6
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIH 78 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~ 78 (354)
++..|+. |.|+|+++||..+|.+.+.+...|..+-.
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~~p~ 64 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAAMPD 64 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH-TT
T ss_pred HHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 6778887 58999999999999999999888887753
|
99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A. |
| >PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.81 Score=31.64 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=39.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|...++. +..|.+||-+++|++..-+...|.-|...|++++.-
T Consensus 9 ~IL~~ls~--~c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~Rkw 52 (72)
T PF05584_consen 9 KILIILSK--RCCTLEELEEKTGISKNTLLVYLSRLAKRGIIERKW 52 (72)
T ss_pred HHHHHHHh--ccCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeee
Confidence 45566666 699999999999999999999999999999999874
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.89 Score=42.75 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=51.5
Q ss_pred CCCeEEeecCCCC---CC--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 231 CHGVEHVGGDMFD---GV--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 231 ~~~v~~~~~d~~~---~~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
.++|+++.+++.+ .. +++|.+++....-.++++...+.++.+.+.++| ||++++=....+
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p-gaRV~~Rsa~~~ 338 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP-GARVLWRSAAVP 338 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC-CCEEEEeeCCCC
Confidence 6899999998877 23 349999999999989999999999999999999 999998665444
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=88.48 E-value=0.33 Score=36.63 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=33.6
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
-|++.|... +.++-++||+.+|+++.-++++|..|...|++....
T Consensus 17 ~Il~~L~~~-~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 17 RILDALLRK-GELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHHH---B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 357777643 789999999999999999999999999999996664
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >PRK09775 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.6 Score=44.88 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=41.5
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
|...|.. +|.|+.|||+.+|++...+++.|+.| .|+|...+.. -..+|+++...
T Consensus 5 ~~~~L~~--g~~~~~eL~~~l~~sq~~~s~~L~~L--~~~V~~~~~g-r~~~Y~l~~~~ 58 (442)
T PRK09775 5 LTTLLLQ--GPLSAAELAARLGVSQATLSRLLAAL--GDQVVRFGKA-RATRYALLRPL 58 (442)
T ss_pred HHHHHhc--CCCCHHHHHHHhCCCHHHHHHHHHHh--hcceeEeccC-ceEEEEecccc
Confidence 4456665 89999999999999999999999999 8888777630 01247776543
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.27 E-value=0.9 Score=40.17 Aligned_cols=209 Identities=11% Similarity=-0.011 Sum_probs=107.6
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhcCC-CcchHHHHHHhcCchhhhhhhhH
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHG-ENNMAAFILLESSPVMLAPWHSL 130 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l 130 (354)
.-+.-.|++...++-..+..+++.|...|++..+. +...+|+.++.++..- -.+..++-=-.+.. .--.....
T Consensus 34 ~~d~wkIvd~s~~plp~v~~i~~~l~~egiv~~~~-----g~v~~TekG~E~~e~~gi~~~~~~~C~~CeG-rgi~l~~f 107 (354)
T COG1568 34 TNDFWKIVDYSDLPLPLVASILEILEDEGIVKIEE-----GGVELTEKGEELAEELGIKKKYDYTCECCEG-RGISLQAF 107 (354)
T ss_pred CcchHhhhhhccCCchHHHHHHHHHHhcCcEEEec-----CcEeehhhhHHHHHHhCCCccccccccCcCC-ccccchhH
Confidence 33889999999999999999999999999999997 6699999997666521 11111110000000 00011112
Q ss_pred HHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH
Q 018565 131 GTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA 210 (354)
Q Consensus 131 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~ 210 (354)
.+.++. +-++....|+-...|.+..........+ +.=.+..+--.+..|+=+| -.-.++++++-.
T Consensus 108 ~dll~k-------------f~eiaK~RP~p~~~yDQgfvTpEttv~R-v~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt 172 (354)
T COG1568 108 KDLLEK-------------FREIAKDRPEPLHQYDQGFVTPETTVSR-VALMYSRGDLEGKEIFVVG-DDDLTSIALALT 172 (354)
T ss_pred HHHHHH-------------HHHHHhcCCCcchhcccccccccceeee-eeeeccccCcCCCeEEEEc-CchhhHHHHHhc
Confidence 222110 1111111111111122111110000000 0001111123457788888 444455554433
Q ss_pred CCCCeEEEeec-hHHhhhcc----c--CCCeEEeecCCCCCCCc-----ceEEEeccccccCChHHHHHHHHHHHHhcCC
Q 018565 211 FPRIRGINFDL-PHVVCVAE----K--CHGVEHVGGDMFDGVPE-----ADAAIIKWVLHDWGDDECIKILKNCKEAITK 278 (354)
Q Consensus 211 ~p~~~~~~~D~-~~~~~~a~----~--~~~v~~~~~d~~~~~~~-----~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p 278 (354)
.---++.++|+ ...+.-.+ + -.+++.+..|..+|+|+ ||+++.--.= .-+....++.+=...||.
T Consensus 173 ~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~FlgRGI~tLkg 249 (354)
T COG1568 173 GMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFLGRGIATLKG 249 (354)
T ss_pred CCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHHhccHHHhcC
Confidence 22236788888 44444332 2 46699999999998873 8998762210 112344555565677876
Q ss_pred CC---ceEEE
Q 018565 279 DK---GKVII 285 (354)
Q Consensus 279 ~g---G~lli 285 (354)
- |.+.+
T Consensus 250 -~~~aGyfgi 258 (354)
T COG1568 250 -EGCAGYFGI 258 (354)
T ss_pred -CCccceEee
Confidence 4 45444
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.66 Score=44.79 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=47.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcC--CCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALK--CDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g--~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
++.|+..|.+ ++.+.-||++.++ +++..+.+.|+.|...|+++........-.|++|+.++
T Consensus 373 r~~IL~~L~~--~~~~~~el~~~l~~~~s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~ 435 (442)
T PRK05638 373 KLEILKILSE--REMYGYEIWKALGKPLKYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGR 435 (442)
T ss_pred HHHHHHHHhh--CCccHHHHHHHHcccCCcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHH
Confidence 4556777775 6899999999998 88999999999999999997542110012499998875
|
|
| >PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B | Back alignment and domain information |
|---|
Probab=88.19 E-value=0.52 Score=29.00 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHH
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFL 76 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L 76 (354)
++..|++.|... +..+..+||+.+|+++..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 456788888874 79999999999999998776655544
|
... |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.14 E-value=1.4 Score=40.69 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH----CC----CCeEEEeec-hHH
Q 018565 157 DAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA----FP----RIRGINFDL-PHV 224 (354)
Q Consensus 157 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p----~~~~~~~D~-~~~ 224 (354)
-|+..+.|-..+..+..-. ...+. .+.+.++|++|+|+|.++..+++. +| .+++..++. ++.
T Consensus 51 Apels~lFGella~~~~~~----wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 51 APELSQLFGELLAEQFLQL----WQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred chhHHHHHHHHHHHHHHHH----HHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 3556666666655432211 11122 345679999999999999988764 34 567888887 443
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.5 Score=36.47 Aligned_cols=93 Identities=22% Similarity=0.376 Sum_probs=64.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC----C-C-C---eEEEeechHHhhhcccCCCeEEeecCCCCC---------CC--
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF----P-R-I---RGINFDLPHVVCVAEKCHGVEHVGGDMFDG---------VP-- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~~-- 246 (354)
+.+..+++|+=...|.++.-+.++. | . - .++.+|+..|... +.|.-..+|+.++ ++
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHhCCC
Confidence 4577899999999999999988764 1 1 1 2788898666443 5566677888773 22
Q ss_pred cceEEEecc-----ccccCChH----HHHHHHHHHHHhcCCCCceEE
Q 018565 247 EADAAIIKW-----VLHDWGDD----ECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 247 ~~D~i~~~~-----~lh~~~~~----~~~~~L~~~~~~L~p~gG~ll 284 (354)
++|+|++-. -+|.++.= -....|.-...+||| ||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~-Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP-GGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC-CCeee
Confidence 489999854 35765432 234556666788999 98765
|
|
| >PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.44 Score=35.70 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHcChhhhhhh---CCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEE---KGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~---~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.-.||+.|.. .+.++++++|++++++++..++..|+.|...|++-..-
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEeccc
Confidence 45556666654 13689999999999999999999999999999986553
|
RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A. |
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.79 E-value=0.69 Score=44.21 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=39.1
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+.|.|.++|++.++++++.++++|+.|...|++.+.+ ++.|.+..
T Consensus 308 g~~~t~~~La~~l~~~~~~v~~iL~~L~~agLI~~~~----~g~~~l~r 352 (412)
T PRK04214 308 GKALDVDEIRRLEPMGYDELGELLCELARIGLLRRGE----RGQWVLAR 352 (412)
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCeEecC----CCceEecC
Confidence 4699999999999999999999999999999998765 36676553
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=87.58 E-value=0.53 Score=30.65 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=27.9
Q ss_pred CHHHHHhHcCCCcccHHHHHHHHhccCce
Q 018565 54 TLNELASALKCDPSLLQRIMRFLIHLKFF 82 (354)
Q Consensus 54 t~~elA~~~g~~~~~l~~lL~~L~~~g~l 82 (354)
|.+.||+.+|++.+-+.+.++.|...|++
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 89999999999999999999999999985
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=87.57 E-value=5.8 Score=37.42 Aligned_cols=99 Identities=22% Similarity=0.223 Sum_probs=61.7
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEee---cC-CCCC---C---CcceEEEec
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVG---GD-MFDG---V---PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~d-~~~~---~---~~~D~i~~~ 254 (354)
..++.+||.+|||. |..+..+++.....++++++. ++..+.+++.....++. .+ +.+. . ..+|+++-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678999999988 888889999875445888876 66666665421222222 11 1111 1 137877664
Q ss_pred c---------------ccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 255 W---------------VLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 ~---------------~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
- +++..++. ...+..+.+.|+| +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK-GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc-CCEEEEEcC
Confidence 2 11111222 3567888999999 999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.3 Score=39.18 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=25.9
Q ss_pred CceEEEecCCccHHHHHHHHHCC--------CCeEEEeec-hHH
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFP--------RIRGINFDL-PHV 224 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~ 224 (354)
..+|+|+|+|+|.++..+++... .++++.++. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 47999999999999999887543 358999998 433
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.72 Score=37.93 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=40.0
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
-.|-.+||+.+|++..-+.|.+..|...+|+.+.. .|.|.++|.
T Consensus 75 ~~t~~~ia~~l~iS~~Tv~r~ik~L~e~~iI~k~~----~G~Y~iNP~ 118 (165)
T PF05732_consen 75 VATQKEIAEKLGISKPTVSRAIKELEEKNIIKKIR----NGAYMINPN 118 (165)
T ss_pred EeeHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEcc----CCeEEECcH
Confidence 34899999999999999999999999999999887 489999985
|
; GO: 0006260 DNA replication, 0006276 plasmid maintenance |
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.4 Score=29.71 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred CCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+ |..+||+.+|++..-+++-|+.|.+.|+++...
T Consensus 22 ~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 22 DRLPSERELAERYGVSRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp SBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred CEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEEEC
Confidence 577 999999999999999999999999999998886
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=0.83 Score=40.47 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=41.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|.+.|.+. +.+++.|||+.+|+++.-++|-|+.|...|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 7 HQILLELLAQL-GFVTVEKVIERLGISPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 34477788764 799999999999999999999999999999998876
|
|
| >PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
Probab=87.17 E-value=0.62 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=34.3
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
|++.|.+. |+.|+.+|++.++++++.++.-|-.|...+++...
T Consensus 18 V~~~Ll~~-G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 18 VGEVLLSR-GRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHHHC--SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCeeee
Confidence 45555543 79999999999999999999999999999998764
|
7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A. |
| >TIGR02147 Fsuc_second hypothetical protein, TIGR02147 | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.98 Score=40.35 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=40.5
Q ss_pred CCCCHHHHHhHcC--CCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 51 SPITLNELASALK--CDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 51 ~~~t~~elA~~~g--~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+..++++||++++ ++..-++.-|+.|..+|++++.+ +|.|..|..+
T Consensus 136 ~~~~~~~ia~~l~p~is~~ev~~sL~~L~~~glikk~~----~g~y~~t~~~ 183 (271)
T TIGR02147 136 FADDPEELAKRCFPKISAEQVKESLDLLERLGLIKKNE----DGFYKQTDKA 183 (271)
T ss_pred CCCCHHHHHHHhCCCCCHHHHHHHHHHHHHCCCeeECC----CCcEEeecce
Confidence 3447899999999 78999999999999999999988 4899999764
|
This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized. |
| >PF14338 Mrr_N: Mrr N-terminal domain | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.85 Score=33.45 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=26.4
Q ss_pred cHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 68 LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 68 ~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
++.=-+..|...|+++.... |.|++|+.|+.+..
T Consensus 56 ri~Wa~~~L~~aGli~~~~r----G~~~iT~~G~~~l~ 89 (92)
T PF14338_consen 56 RIRWARSYLKKAGLIERPKR----GIWRITEKGRKALA 89 (92)
T ss_pred hHHHHHHHHHHCCCccCCCC----CceEECHhHHHHHh
Confidence 34445788999999998774 89999999974443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.80 E-value=0.82 Score=43.97 Aligned_cols=55 Identities=27% Similarity=0.308 Sum_probs=45.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD 243 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~ 243 (354)
++....++|+=||||.++.++++. -.+++++++ |+.++.|+. -.+.+|++|-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 566789999999999999999886 457899998 888887764 5789999984444
|
|
| >PRK00215 LexA repressor; Validated | Back alignment and domain information |
|---|
Probab=86.68 E-value=0.95 Score=38.65 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=34.5
Q ss_pred CCCCCHHHHHhHcCC-CcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKC-DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~-~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.+.|..|||+.+|+ ++..+.++|+.|...|++++..
T Consensus 21 ~~~~s~~ela~~~~~~~~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLRSPSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEeCC
Confidence 358899999999999 9999999999999999998876
|
|
| >PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=0.99 Score=41.51 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=44.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
...|++.|.+ +.+.+..+||+.+|+++..+.+.|+.|...|+.....+ ...|++.+..
T Consensus 6 ~~~il~~L~~-~~~~s~~~LA~~lgvsr~tV~~~l~~L~~~G~~i~~~~---~~Gy~L~~~~ 63 (319)
T PRK11886 6 MLQLLSLLAD-GDFHSGEQLGEELGISRAAIWKHIQTLEEWGLDIFSVK---GKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCceEEec---CCeEEecCcc
Confidence 3456777776 36889999999999999999999999999999443332 2468876543
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=86.24 E-value=2.3 Score=33.05 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCC----CcceEEEeccccccCChH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGV----PEADAAIIKWVLHDWGDD 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~----~~~D~i~~~~~lh~~~~~ 263 (354)
+..++++||-|.=.-....++++ ++.+++.|+ +. .+ ...+.++..|+++|- .++|+|.+.+. +.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC-----Ch
Confidence 44699999988775555444443 488999998 44 22 367889999999963 35899988763 34
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+...-+.++.+.. |.-++|...
T Consensus 82 El~~~il~lA~~v---~adlii~pL 103 (127)
T PF03686_consen 82 ELQPPILELAKKV---GADLIIRPL 103 (127)
T ss_dssp TSHHHHHHHHHHH---T-EEEEE-B
T ss_pred HHhHHHHHHHHHh---CCCEEEECC
Confidence 4445555565544 445666443
|
; PDB: 2K4M_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.75 E-value=0.8 Score=40.70 Aligned_cols=94 Identities=9% Similarity=-0.051 Sum_probs=52.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------CCCeEEeec---CCCC---CC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGG---DMFD---GV 245 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~---d~~~---~~ 245 (354)
...+|||+|||+|...+......- ..+..+|. .++++...- ..-...... |... ..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 568999999999998888776532 56667776 445422110 111111122 1111 11
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
-.||+|..+-+++..+...... .......+++ +|..++
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~-~~~r~~l~~~-D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLY-LLHRPCLLKT-DGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhH-hhhhhhcCCc-cchhhh
Confidence 2589999998888755443322 2233344455 676654
|
|
| >COG1510 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=85.48 E-value=0.83 Score=37.27 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=34.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|+|++||++.+|++...++.-|+-|...|++.+.-
T Consensus 40 ~Pmtl~Ei~E~lg~Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGMSKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCCCcchHHHHHHHHHhcchHHhhh
Confidence 799999999999999999999999999999998764
|
|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=1 Score=38.31 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++|-++||+.+|+++..+.|.|+.|...|++...+
T Consensus 168 ~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGCSREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 78899999999999999999999999999999887
|
|
| >PRK09462 fur ferric uptake regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=1.7 Score=35.04 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHcChhhhhhhC-CCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 36 CAVELGIAEAVEEK-GSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 36 ~a~~lglf~~L~~~-~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+.-+.-|++.|... +++.|++||-+.+ +++..-+.|.|+.|+..|++.+....+|...|.++
T Consensus 16 T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~y~~~ 83 (148)
T PRK09462 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT 83 (148)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCcEEEEeC
Confidence 44566778888653 3699999998877 35678899999999999999876532223456543
|
|
| >PRK12423 LexA repressor; Provisional | Back alignment and domain information |
|---|
Probab=84.68 E-value=0.93 Score=38.68 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCCHHHHHhHcCC-CcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKC-DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~-~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+-|..|||+.+|+ ++..++..|+.|...|+++...
T Consensus 25 ~Ps~~eia~~~g~~s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 25 PPSLAEIAQAFGFASRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCCCEEecC
Confidence 5699999999995 8889999999999999999876
|
|
| >PRK10906 DNA-binding transcriptional repressor GlpR; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=1.2 Score=39.44 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=42.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|.+.|.+. +.+++.|||+.+++++.-++|-|..|...|++.+..
T Consensus 6 R~~~Il~~l~~~-~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 6 RHDAIIELVKQQ-GYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHHHc-CCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence 345577788764 789999999999999999999999999999998886
|
|
| >PRK10411 DNA-binding transcriptional activator FucR; Provisional | Back alignment and domain information |
|---|
Probab=84.17 E-value=1.6 Score=38.37 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=40.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|.+.|.+. +.++++|||+.+|+++.-++|-|..|...|.+.+..
T Consensus 7 ~~Il~~l~~~-~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 7 QAIVDLLLNH-TSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4467777764 799999999999999999999999999999998765
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=83.94 E-value=2.2 Score=37.93 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=47.1
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCc
Q 018565 203 TLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKG 281 (354)
Q Consensus 203 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG 281 (354)
++..|.++.+..+++++|. +..+..+.+..-+.-...+ .+.+.++|+|+++- |......+++++...+++ |.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~-~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP-GA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T-TS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC-Cc
Confidence 3567788888999999999 7777777543333333322 22345689998865 455678888888888887 64
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
Probab=83.65 E-value=1.4 Score=36.87 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|+|-++||+.+|+++..+.|.|+.|...|+++..+
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 78999999999999999999999999999999887
|
Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.33 E-value=1.7 Score=41.01 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC-Cc--ceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV-PE--ADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~-~~--~D~i~~~~~ 256 (354)
+...+||||.|+|.++...+++..+ .++.++. ..|.+.+++ .++|.++.---.+ .+ |. +|+++..-+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4578999999999999988888644 4788887 777777764 5677776532222 22 22 565544333
Q ss_pred cccCChHHHHHHHHHHHHhc
Q 018565 257 LHDWGDDECIKILKNCKEAI 276 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L 276 (354)
.-.+--+-+..-++++.+.|
T Consensus 145 dtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhccccchhHHHHHHHh
Confidence 22222222333455555544
|
|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.3 Score=38.58 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=37.7
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
|+|-++||+.+|+++..+.|.|+.|...|+++..+ +.+.+..
T Consensus 184 ~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~~~~-----~~i~i~d 225 (235)
T PRK11161 184 TMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKG-----KYITIEN 225 (235)
T ss_pred cccHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC-----CEEEEcC
Confidence 68999999999999999999999999999999987 5665543
|
|
| >PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation | Back alignment and domain information |
|---|
Probab=83.18 E-value=3.9 Score=31.69 Aligned_cols=75 Identities=16% Similarity=0.083 Sum_probs=51.5
Q ss_pred HHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhc
Q 018565 57 ELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLA 136 (354)
Q Consensus 57 elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 136 (354)
.||+.++++-+-+--+++++..+|+++..+ |...+|+.|+.++..+......++.-.. ....+....+...+++
T Consensus 2 ~La~~l~~eiDdL~p~~eAaelLgf~~~~~-----Gdi~LT~~G~~f~~a~~~~rK~if~~~l-~~~~Pl~~~I~~~L~~ 75 (120)
T PF09821_consen 2 QLADELHLEIDDLLPIVEAAELLGFAEVEE-----GDIRLTPLGRRFAEADIDERKEIFREQL-LRHVPLAAHIRRVLRE 75 (120)
T ss_pred chHHHhCCcHHHHHHHHHHHHHcCCeeecC-----CcEEeccchHHHHHCChHHHHHHHHHHH-HhcCCHHHHHHHHHHh
Confidence 478999999999999999999999999987 8999999998666544322222222211 1123334455656654
Q ss_pred C
Q 018565 137 N 137 (354)
Q Consensus 137 ~ 137 (354)
.
T Consensus 76 ~ 76 (120)
T PF09821_consen 76 R 76 (120)
T ss_pred C
Confidence 3
|
|
| >PF13518 HTH_28: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=83.08 E-value=1.4 Score=28.04 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=27.0
Q ss_pred CCHHHHHhHcCCCcccHHHHHHHHhccCc
Q 018565 53 ITLNELASALKCDPSLLQRIMRFLIHLKF 81 (354)
Q Consensus 53 ~t~~elA~~~g~~~~~l~~lL~~L~~~g~ 81 (354)
.|..++|..+|+++..+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gis~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGISRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHHHhcCH
Confidence 49999999999999999999999998885
|
|
| >PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN) | Back alignment and domain information |
|---|
Probab=82.69 E-value=1.7 Score=29.44 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=35.6
Q ss_pred CCCCHHHHHhHcCCCcc-cHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 51 SPITLNELASALKCDPS-LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
.+++.+++.++.|.+-. .....|..+...|+++.++ +++++|+.|.
T Consensus 19 ~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll~~~~-----~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGIDFAEEFQKELEELQEDGLLEIDG-----GRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT--THHH-HHHHHHHHHTTSEEE-S-----SEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEeC-----CEEEECcccC
Confidence 58899999999999843 4477899999999999998 8999998874
|
This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=82.64 E-value=7.4 Score=29.42 Aligned_cols=81 Identities=25% Similarity=0.263 Sum_probs=48.0
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-------CCcceEEEeccccccCChHHHHH
Q 018565 198 GNDGTTLRTLTKAF--PRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-------VPEADAAIIKWVLHDWGDDECIK 267 (354)
Q Consensus 198 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~~lh~~~~~~~~~ 267 (354)
||.|.++..+++.. .+..++++|. ++.++.+++ ..+.++.||..++ ..++|.+++..- ++.....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45566666665532 3457999998 777777765 3388999999883 124777666431 2444444
Q ss_pred HHHHHHHhcCCCCceEEE
Q 018565 268 ILKNCKEAITKDKGKVII 285 (354)
Q Consensus 268 ~L~~~~~~L~p~gG~lli 285 (354)
+...+ +.+.| ..+++.
T Consensus 79 ~~~~~-r~~~~-~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELNP-DIRIIA 94 (116)
T ss_dssp HHHHH-HHHTT-TSEEEE
T ss_pred HHHHH-HHHCC-CCeEEE
Confidence 44444 44555 566654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK10046 dpiA two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.6 Score=37.76 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=39.2
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|++.+.++..+.|.+|||+++++++.-+++.+..|+..|++..+-
T Consensus 166 ~Vl~~~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 166 AVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHHHHcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEe
Confidence 5677776521268999999999999999999999999999998774
|
|
| >PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=1.6 Score=38.77 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=42.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|.+.|.+. +.+++.|||+.+++++.-++|=|+.|...|++.+..
T Consensus 7 ~~~Il~~L~~~-~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 7 QAAILEYLQKQ-GKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45677888774 789999999999999999999999999999998876
|
|
| >PRK09802 DNA-binding transcriptional regulator AgaR; Provisional | Back alignment and domain information |
|---|
Probab=82.22 E-value=1.6 Score=39.04 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
....|.+.|... +.+++.|||+.+|+++.-++|=|..|...|++.+..
T Consensus 18 R~~~Il~~L~~~-~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 18 RREQIIQRLRQQ-GSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHHc-CCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 445677888764 689999999999999999999999999999999886
|
|
| >PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A | Back alignment and domain information |
|---|
Probab=82.21 E-value=1.2 Score=27.17 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=21.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLI 77 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~ 77 (354)
.+.|+++||+.+|+++..+.|..+...
T Consensus 7 ~~~~l~~iA~~~g~S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGFSPSYFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 589999999999999999999887654
|
|
| >COG1654 BirA Biotin operon repressor [Transcription] | Back alignment and domain information |
|---|
Probab=82.21 E-value=2.7 Score=29.87 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=42.7
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
+|..+.. .+.|-++||+.+|++...+...++.|...|+=..... ...|++.....
T Consensus 11 ll~~~~~--~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~---~kGY~L~~~~~ 65 (79)
T COG1654 11 LLLLLTG--NFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVR---GKGYLLPQLPD 65 (79)
T ss_pred HHHHcCC--CcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecC---CCceeccCccc
Confidence 3444443 6999999999999999999999999999998666653 24687775543
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=82.12 E-value=4.4 Score=32.23 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=46.3
Q ss_pred eEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CCC--cceEEEeccccccCC---------hHHHHHHHHHH
Q 018565 215 RGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GVP--EADAAIIKWVLHDWG---------DDECIKILKNC 272 (354)
Q Consensus 215 ~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~~--~~D~i~~~~~lh~~~---------~~~~~~~L~~~ 272 (354)
++.++|+ +++++..++ .+|++++..+=.. -++ +.|+++++- -++| .+.-...++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4789999 777777664 4689998764433 233 478877652 2222 23457889999
Q ss_pred HHhcCCCCceEEEEe
Q 018565 273 KEAITKDKGKVIIVE 287 (354)
Q Consensus 273 ~~~L~p~gG~lli~e 287 (354)
.+.|+| ||.+.|+-
T Consensus 79 l~lL~~-gG~i~iv~ 92 (140)
T PF06962_consen 79 LELLKP-GGIITIVV 92 (140)
T ss_dssp HHHEEE-EEEEEEEE
T ss_pred HHhhcc-CCEEEEEE
Confidence 999999 99888754
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY | Back alignment and domain information |
|---|
Probab=82.02 E-value=1.8 Score=37.50 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=40.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|++.|...++-++..+||+++|+++..+++-++.|.+.|+++...
T Consensus 187 ~IL~~L~~~egrlse~eLAerlGVSRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 187 HIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHhccccccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 5788887533689999999999999999999999999999998776
|
This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam. |
| >PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C | Back alignment and domain information |
|---|
Probab=81.98 E-value=0.94 Score=28.75 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=23.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKF 81 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~ 81 (354)
+..+...+.+ +.|..+||+.+|+++.-+.+|++.....|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGVSRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS-HHHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCcCHHHHHHHHHHcccccc
Confidence 4445555553 899999999999999999999988776664
|
|
| >COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.98 E-value=2.1 Score=34.39 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=47.7
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
--+..|++.|...+++.|+++|=..+ ++++.-+.|.|+.|...|++.+-...++..+|.++..
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~~~ 88 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELNSE 88 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecCCC
Confidence 35678889998766789999996665 4677889999999999999998875333334655544
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.90 E-value=15 Score=30.95 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=68.8
Q ss_pred CCceEEEecCCccHHHHHHHH----HCCCCeEEEeech--HHhhhcccCCCeEEeecCCCCC-C--------Ccc-eEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTK----AFPRIRGINFDLP--HVVCVAEKCHGVEHVGGDMFDG-V--------PEA-DAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~----~~p~~~~~~~D~~--~~~~~a~~~~~v~~~~~d~~~~-~--------~~~-D~i~ 252 (354)
.+..|+++|.-.|..+..++. .....+++++|+. ..-..+.+.++|.|+.++-.+| . ..| -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 468999999777766655543 3344678888872 2223444478999999988774 1 123 3445
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~ 294 (354)
+-..-|+ -+.+.+.|+-..++|.. |-++++.|....+-.
T Consensus 149 ilDsdHs--~~hvLAel~~~~pllsa-G~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHS--MEHVLAELKLLAPLLSA-GDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCch--HHHHHHHHHHhhhHhhc-CceEEEecccccCCC
Confidence 5555564 55677788888888887 888888777765543
|
|
| >PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=81.84 E-value=2.3 Score=30.77 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=34.8
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc---CCCCCceEecCccc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP---TSQGSMAFQQTPLS 100 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~---~~~~~~~y~~t~~~ 100 (354)
|.-++.. +..++..|-+.+|++.+-+.+.|.+|..+|+-..-. ..+..|.|+++.-|
T Consensus 13 la~li~~--~~~nvp~L~~~TGmPrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~~GyY~i~~WG 72 (90)
T PF09904_consen 13 LAYLIDS--GERNVPALMEATGMPRRTIQDTIKALPELGIECEFVQDGERNNAGYYRISDWG 72 (90)
T ss_dssp HHHHHHH--S-B-HHHHHHHH---HHHHHHHHHGGGGGT-EEEEE--TTS-S--EEEEEE-T
T ss_pred HHHHHhc--CCccHHHHHHHhCCCHhHHHHHHHHhhcCCeEEEEEecCccCCCCcEEeeecC
Confidence 3334444 445999999999999999999999999999876522 11235778887654
|
; PDB: 3KE2_B. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.71 E-value=6 Score=36.87 Aligned_cols=93 Identities=24% Similarity=0.201 Sum_probs=64.0
Q ss_pred ceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccC---CCeEEeecC-C----CC-CCC-cceEEEeccccc
Q 018565 191 ETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKC---HGVEHVGGD-M----FD-GVP-EADAAIIKWVLH 258 (354)
Q Consensus 191 ~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d-~----~~-~~~-~~D~i~~~~~lh 258 (354)
.+|+=+|||. |.++..+++.+...++++.|. ++-++.|++. +.+.....+ . .+ .-+ .+|+++-+.-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3999999995 666677888888889999999 8888888761 212211121 0 01 112 4898877554
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
....+..+.++++| ||++.++-...++
T Consensus 248 ------~~~~~~~ai~~~r~-gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP-GGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC-CCEEEEEeccCCc
Confidence 12468888889999 9999998876554
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.49 E-value=16 Score=31.95 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=66.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-----hHHhhhcccCCCeEEeecCCCCCCC------cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-----PHVVCVAEKCHGVEHVGGDMFDGVP------EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~~~~~~------~~D~i~~~ 254 (354)
..+..+||-+|.++|.....+..- .|.--+..++. -+.+..|++..+|-.+.-|...|.. =.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 578899999999999988777663 35444555554 2455666666777777778777632 2466654
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.+-+ ++++.-+.-++.--||+ ||.++|.-...
T Consensus 233 Dvaq---pdq~RivaLNA~~FLk~-gGhfvisikan 264 (317)
T KOG1596|consen 233 DVAQ---PDQARIVALNAQYFLKN-GGHFVISIKAN 264 (317)
T ss_pred cCCC---chhhhhhhhhhhhhhcc-CCeEEEEEecc
Confidence 2222 34555666678888999 99998865433
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.36 E-value=6.9 Score=35.22 Aligned_cols=82 Identities=22% Similarity=0.128 Sum_probs=52.1
Q ss_pred ceEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEee-cCC-CCCCCcceEEEeccccccCChHHH
Q 018565 191 ETLVDIGGN--DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVG-GDM-FDGVPEADAAIIKWVLHDWGDDEC 265 (354)
Q Consensus 191 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~d~-~~~~~~~D~i~~~~~lh~~~~~~~ 265 (354)
.+|+=+|.| -|.++..+.++.+...+++.|. ......+.. -.+.... .+. ......+|+|+.+- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-lgv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-LGVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-cCcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 466777766 3455666666767777888887 555555543 2222222 233 22455689998865 44567
Q ss_pred HHHHHHHHHhcCC
Q 018565 266 IKILKNCKEAITK 278 (354)
Q Consensus 266 ~~~L~~~~~~L~p 278 (354)
.++++++...|+|
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7899999999998
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=8.8 Score=37.69 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred CCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC--------------C-------
Q 018565 188 DGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD--------------G------- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~--------------~------- 244 (354)
.++.+|+=+|||. |..+...++.. +.+++++|. ++..+.++.. ..++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 3578999999996 45566666665 458999999 8888877751 12221111100 1
Q ss_pred -----CCcceEEEeccccccCChHHHHHH-HHHHHHhcCCCCceEEEEee
Q 018565 245 -----VPEADAAIIKWVLHDWGDDECIKI-LKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 245 -----~~~~D~i~~~~~lh~~~~~~~~~~-L~~~~~~L~p~gG~lli~e~ 288 (354)
..++|+++...-.. ......+ .+...+.+|| ||.++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~p---g~~aP~lit~~~v~~mkp-GgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIP---GKPAPKLITAEMVASMKP-GSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCC---cccCcchHHHHHHHhcCC-CCEEEEEcc
Confidence 13589988765432 2112244 5889999999 998877643
|
|
| >PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms | Back alignment and domain information |
|---|
Probab=81.12 E-value=1.1 Score=27.97 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=17.9
Q ss_pred CCCHHHHHhHcCCCcccHHHHHH
Q 018565 52 PITLNELASALKCDPSLLQRIMR 74 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~ 74 (354)
+.|+.+||+.+|++..-+.|+|+
T Consensus 21 G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS-HHHHHHHHC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHh
Confidence 49999999999999999988874
|
Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C .... |
| >TIGR03879 near_KaiC_dom probable regulatory domain | Back alignment and domain information |
|---|
Probab=81.07 E-value=0.88 Score=31.70 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=30.8
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceee
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKE 84 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~ 84 (354)
...|..|||+.+|+++..++.++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGRTEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhcCcccchHHH
Confidence 5899999999999999999999999888887654
|
This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.06 E-value=5.1 Score=38.29 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=56.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCC--CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CCC---cceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP--RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GVP---EADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~~---~~D~i~ 252 (354)
.+..+.|+|.|.|.-...+....+ .-.++.+|. ..+...... ...+.+....|+. |.+ .||+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 345778888776644443333333 335778887 444443322 1122222212322 322 399999
Q ss_pred eccccccCChH-HHHHHHHHHH-HhcCCCCceEEEEee
Q 018565 253 IKWVLHDWGDD-ECIKILKNCK-EAITKDKGKVIIVEA 288 (354)
Q Consensus 253 ~~~~lh~~~~~-~~~~~L~~~~-~~L~p~gG~lli~e~ 288 (354)
+.+.+|+++.. ....+.+++. +..++ |+.++++|.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~-g~~lViIe~ 316 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRS-GYFLVIIEK 316 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCC-CceEEEEec
Confidence 99999998644 3344455544 45677 999999885
|
|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=80.99 E-value=2 Score=36.34 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=36.7
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++|-++||+.+|+++..+.|.|.-|...|++...+ ++....+
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~-----~~i~I~d 190 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIRSGY-----GKIQLLD 190 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcCC-----CEEEEEC
Confidence 78999999999999999999999999999999665 5555443
|
|
| >COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.9 Score=38.15 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=42.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
...|++.|.+. |.++++|||+.+|+++.-++|=|+.|...|++.+..
T Consensus 7 ~~~Il~~l~~~-g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 7 HQKILELLKEK-GKVSVEELAELFGVSEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHHc-CcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEEEEe
Confidence 34577888775 799999999999999999999999999999999976
|
|
| >PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis | Back alignment and domain information |
|---|
Probab=80.48 E-value=2.3 Score=32.51 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
.|.|++|||..++++-.-++-++--|...|++....+
T Consensus 54 ~~~SVAEiAA~L~lPlgVvrVLvsDL~~~G~v~v~~p 90 (114)
T PF05331_consen 54 RPLSVAEIAARLGLPLGVVRVLVSDLADAGLVRVRAP 90 (114)
T ss_pred CCccHHHHHHhhCCCchhhhhhHHHHHhCCCEEEeCC
Confidence 5999999999999999999999999999999988763
|
The function of these proteins is unknown. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=80.47 E-value=14 Score=33.80 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=65.5
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhccc-C-CCeEEeecCC-----CC----CCC--cceEE
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-C-HGVEHVGGDM-----FD----GVP--EADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-~~v~~~~~d~-----~~----~~~--~~D~i 251 (354)
...+.++|=+|+|. |..+...++.+-..++++.|+ ++-++.|++ . ..+......- .+ -.. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56789999999995 666667778888889999999 888998887 1 1121111111 00 011 27888
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
+-+..++ ..++.+..++++ ||.++++++-.+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~-gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS-GGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc-CCEEEEeccCCCc
Confidence 7777665 345566778898 9998888865443
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=80.14 E-value=26 Score=28.68 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCC--CC-----cceEEEeccccccCC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG--VP-----EADAAIIKWVLHDWG 261 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--~~-----~~D~i~~~~~lh~~~ 261 (354)
+..+|+=|||=+-.....- ...++.++..+|...--... .+. .|+--|+.+| +| .+|+|++--.+ ++
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF--l~ 98 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF--LS 98 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--CCc-ceEECCCCChhhhhhhcCCCceEEEECCCC--CC
Confidence 5689999999887665443 35678889999985444333 223 5666777764 33 48999986555 45
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+-..++.+.++.++++ ++++++..
T Consensus 99 ~ec~~k~a~ti~~L~k~-~~kii~~T 123 (162)
T PF10237_consen 99 EECLTKTAETIRLLLKP-GGKIILCT 123 (162)
T ss_pred HHHHHHHHHHHHHHhCc-cceEEEec
Confidence 55555767777777788 88988755
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.03 E-value=3 Score=36.28 Aligned_cols=76 Identities=9% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHHhcCCCccCCC--ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-------c--------CCCeEEeec
Q 018565 178 AIIEGCPEVFDGI--ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-------K--------CHGVEHVGG 239 (354)
Q Consensus 178 ~~~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~~v~~~~~ 239 (354)
.+++... +.+. .+|||.=+|-|.-+.-++.. +.++++++. |-+....+ . ..||+++.+
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3444444 4443 49999999999999888765 678999998 43322221 1 258999999
Q ss_pred CCCC--CC--CcceEEEecccc
Q 018565 240 DMFD--GV--PEADAAIIKWVL 257 (354)
Q Consensus 240 d~~~--~~--~~~D~i~~~~~l 257 (354)
|..+ .. .++|+|++--.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 9887 32 359999885444
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 354 | ||||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 4e-53 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 4e-51 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 6e-51 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 6e-51 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 6e-51 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 3e-49 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 5e-48 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-45 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 2e-43 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 4e-36 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-31 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 1e-16 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 6e-14 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 6e-10 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 1e-08 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 1e-08 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 3e-06 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 8e-05 |
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-135
Identities = 115/347 (33%), Positives = 195/347 (56%), Gaps = 11/347 (3%)
Query: 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS---LL 69
E A+ ++K+++ F + +K AVE+ I ++ G PI+L+ L S L+ S +
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 70 QRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHS 129
+R+MR+L H FF+ + + S + T S L+R + +A + P + +H
Sbjct: 72 RRLMRYLAHNGFFEIITKEEES--YALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHE 129
Query: 130 LGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDG 189
L + + F G W + + ++ NDAMA D++L A+ + C VFDG
Sbjct: 130 LKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDG 188
Query: 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEAD 249
+E++VD+GG GTT + + + FP+++ I FD P VV + + +VGGDMF +P AD
Sbjct: 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNAD 248
Query: 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDK--GKVIIVEAIIEEDDGVDNKFKSVRLML 307
A ++K++LH+W D +C++ILK CKEA+T D GKV I++ +I++ +N+ ++L++
Sbjct: 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD-ENQVTQIKLLM 307
Query: 308 DMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
D+ M GKER+ +EW + +AGF Y I+ + SLIE +P
Sbjct: 308 DVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 375 bits (965), Expect = e-130
Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 24/361 (6%)
Query: 1 MEETKVQVMMKKEED--DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNEL 58
M+ + + D + + +++ G+T A ++ A +G+A+ + + P T EL
Sbjct: 4 MQRQRPPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVDG--PRTPAEL 61
Query: 59 ASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLE 118
A+A D L+R++R L +E F T L A IL+
Sbjct: 62 AAATGTDADALRRVLRLLAVRDVVRESDG-----RFALTDKGAALRSDSPVPARAGILMF 116
Query: 119 SSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRA 178
+ + H + L AF G + +Y DA L + M +
Sbjct: 117 TDTMFWTMSHRV-ASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLI 175
Query: 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHG----- 233
+ F T+ D+GG G L T+ + P ++G+ D VV
Sbjct: 176 LARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGR 233
Query: 234 VEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293
+ V GD VP AD ++K +LH+WGD++ ++IL NC+ + G+V++++A++ E
Sbjct: 234 WKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVM-PAHGRVLVIDAVVPEG 292
Query: 294 DGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAF 353
+ +D +M+A G+ER+ E + + AG + +V S+
Sbjct: 293 ND-----AHQSKEMDFMMLAART-GQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGV 346
Query: 354 P 354
P
Sbjct: 347 P 347
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-128
Identities = 111/359 (30%), Positives = 182/359 (50%), Gaps = 16/359 (4%)
Query: 7 QVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSP---ITLNELASALK 63
+ +++A + + +K A+EL + E + + P I+ E+A+ L
Sbjct: 11 IIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLP 70
Query: 64 C----DPSLLQRIMRFLIHLKFFKEV----PTSQGSMAFQQTPLSRRLMR-HGENNMAAF 114
P +L R++R L P+ + + P+ + L + ++A F
Sbjct: 71 TTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPF 130
Query: 115 ILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRL 174
+LL + V+L PW L +L G F+KA+G +++ Y D +K+ N M+ ++ +
Sbjct: 131 LLLATDKVLLEPWFYLKDAIL-EGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTI 189
Query: 175 AMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGV 234
M+ I+E F+G+ T+VD+GG G + +P I INFDLPHV+ A GV
Sbjct: 190 TMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGV 248
Query: 235 EHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294
EH+GGDMFDGVP+ DA IKW+ HDW D+ C+K+LKNC A+ D GKVI+ E I+
Sbjct: 249 EHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAAL-PDHGKVIVAEYILPPSP 307
Query: 295 GVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAF 353
+ V + D +M+A+ GKER+ KE+ + +GF + + S ++E
Sbjct: 308 D-PSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 368 bits (947), Expect = e-127
Identities = 101/367 (27%), Positives = 173/367 (47%), Gaps = 19/367 (5%)
Query: 2 EETKVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSP---ITLNEL 58
E+ ++ ++ ED A + AV+ A++L + E + + P ++ +E+
Sbjct: 9 EDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEI 68
Query: 59 ASALKCDPS------LLQRIMRFLIHLKFFKEVPTSQ----GSMAFQQTPLSRRLMR-HG 107
AS L L R++R L + + + + + L+
Sbjct: 69 ASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 128
Query: 108 ENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDA 167
+A+F P +L W + V+ F HG + + D +++ N +
Sbjct: 129 RGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKS 188
Query: 168 MACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCV 227
M M+ ++E F+GI TLVD+GG G L + +P I+GINFDLP V+
Sbjct: 189 MVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247
Query: 228 AEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287
A G+EHVGGDMF VP+ DA I+K V H+W D++CI+ L NC +A+ GKVIIVE
Sbjct: 248 APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL-SPNGKVIIVE 306
Query: 288 AIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT-SIHAV 346
I+ E+ + K V + D +M G+ER+ K+++ + + +GFS++ +
Sbjct: 307 FILPEEPNTSEESKLVSTL-DNLMFITVG-GRERTEKQYEKLSKLSGFSKFQVACRAFNS 364
Query: 347 QSLIEAF 353
++E +
Sbjct: 365 LGVMEFY 371
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 366 bits (941), Expect = e-126
Identities = 113/364 (31%), Positives = 181/364 (49%), Gaps = 16/364 (4%)
Query: 1 MEETKVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKG-SPITLNELA 59
M T M ++DA + + +K A+ELG+ E + G +T E+A
Sbjct: 5 MGSTAAD-MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVA 63
Query: 60 SALKCD-----PSLLQRIMRFLIHLKFFKEV----PTSQGSMAFQQTPLSRRLMR-HGEN 109
+ L P ++ RI+R L + + S ++ P+ + L
Sbjct: 64 AKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGV 123
Query: 110 NMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMA 169
+MAA L+ V++ W+ L VL +G F+KA+G + Y D +++ N+ M
Sbjct: 124 SMAALALMNQDKVLMESWYYLKDAVL-DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMK 182
Query: 170 CDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAE 229
+ + + ++E F+G+ TLVD+GG G T+ + +P I+G+NFDLPHV+ A
Sbjct: 183 NHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP 241
Query: 230 KCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289
+ GV HVGGDMF VP D ++KW+LHDW D C +LKNC +A+ GKV++V+ I
Sbjct: 242 QFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDAL-PAHGKVVLVQCI 300
Query: 290 IEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSL 349
+ + N +DM+M+AH G+ER +E+ + R AGF+ T I+A
Sbjct: 301 LPVNPE-ANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWA 359
Query: 350 IEAF 353
IE
Sbjct: 360 IEFT 363
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 364 bits (936), Expect = e-125
Identities = 91/363 (25%), Positives = 152/363 (41%), Gaps = 25/363 (6%)
Query: 1 MEETKVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELAS 60
E + A+ + + G + AVELG+ E ++E P T LA
Sbjct: 22 TVEQTPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG--PRTATALAE 79
Query: 61 ALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESS 120
A L+R++R L + F ++ F Q LS L+ + +A +++
Sbjct: 80 ATGAHEQTLRRLLRLLATVGVFDDLGHDDL---FAQNALSAVLLPDPASPVATDARFQAA 136
Query: 121 PVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAII 180
P W L V G ++FD A+G W D +L N AM + +
Sbjct: 137 PWHWRAWEQLTHSVR-TGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVA 195
Query: 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHG 233
F G T VDIGG G+ + + AFP +RG + P V A +
Sbjct: 196 AAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADR 253
Query: 234 VEHVGGDMFDGVP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292
E + GD F+ +P AD +IK VLHDW DD+ ++IL+ A+ K ++++++ +I+E
Sbjct: 254 CEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAM-KPDSRLLVIDNLIDE 312
Query: 293 DDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHA-VQSLIE 351
+ L +D++++ G ERS E+ +L ++G A ++E
Sbjct: 313 RPA------ASTLFVDLLLLVLVG-GAERSESEFAALLEKSGLRVERSLPCGAGPVRIVE 365
Query: 352 AFP 354
Sbjct: 366 IRR 368
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 363 bits (932), Expect = e-125
Identities = 130/356 (36%), Positives = 194/356 (54%), Gaps = 17/356 (4%)
Query: 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPS---LL 69
E A++ ++K+V+ F + +K A+ELGIA+A+ G P+TL+ELAS+LK PS +L
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 70 QRIMRFLIHLKFFKEVPTSQGS------MAFQQTPLSRRLMRHGENNMAAFILLESSPVM 123
R +R L H FF + +A+ TP S+ L+ +++ + P
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 125
Query: 124 LAPWHSLGTRVLANGT-SAFDKAHGKDVWSYAAADAAHSKL--INDAMACDTRLAMRAII 180
L W S + + F+ A G+ W + D+ S L DAMA D+R+ +
Sbjct: 126 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQ 185
Query: 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGD 240
E VF+G+E+LVD+GG G + + + FP ++ FD P VV + VGGD
Sbjct: 186 E-NKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 244
Query: 241 MFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAI--TKDKGKVIIVEAIIEEDDGVDN 298
MF +P ADA ++KWVLHDW D++ +KILKN KEAI GKVII++ I+E D
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD-DR 303
Query: 299 KFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
++L D+VM+ GKER+ +EW+ ++ AGFS Y IT I +SLIE +P
Sbjct: 304 GLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-122
Identities = 74/360 (20%), Positives = 139/360 (38%), Gaps = 26/360 (7%)
Query: 9 MMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSL 68
+ D + K + ++ A L + + + TL LA P
Sbjct: 8 EPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHPQA 65
Query: 69 LQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPV-MLAPW 127
L R++R L + + + T L L A++ L + +
Sbjct: 66 LSRLVRHLTVVGVLEGGEKQGR--PLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAF 123
Query: 128 HSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVF 187
L V+ G A+ +G+ W +AD A + + M+CD LA A + +
Sbjct: 124 TGL-LDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--W 180
Query: 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGD 240
+ ++D+GG +G L + P +RG +L A + V GD
Sbjct: 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD 240
Query: 241 MFDGVP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNK 299
F +P AD ++ +VL +W D++ + IL+ C A+ + G++++++ E DG D
Sbjct: 241 FFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRAL-EPGGRLLVLDRADVEGDGADRF 299
Query: 300 FKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQ-----SLIEAFP 354
F +LD+ M+ G+ R+ E + AG + + + + S++E
Sbjct: 300 F---STLLDLRMLTFMG-GRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 351 bits (903), Expect = e-121
Identities = 76/349 (21%), Positives = 127/349 (36%), Gaps = 29/349 (8%)
Query: 15 DDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMR 74
A + + V+ A L +A+ + T E+ASA L R++R
Sbjct: 3 KRAAHIGLRALADLATPMAVRVAATLRVADHI--AAGHRTAAEIASAAGAHADSLDRLLR 60
Query: 75 FLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVML-APWHSLGTR 133
L+ + F + T +L ++ + S+ + L
Sbjct: 61 HLVAVGLFTRDGQG----VYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVEL-AH 115
Query: 134 VLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETL 193
+ G A+ +G W +D S + M+ L I + + +
Sbjct: 116 SIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHV 173
Query: 194 VDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGVP 246
VD+GG G L L A + G DL A + + V G FD +P
Sbjct: 174 VDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP 233
Query: 247 E-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRL 305
A ++ VLHDW D + IL+ C EA G V+++EA+ ++
Sbjct: 234 AGAGGYVLSAVLHDWDDLSAVAILRRCAEAA-GSGGVVLVIEAVAGDE--------HAGT 284
Query: 306 MLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+D+ M+ + GKERSL E + QAG + I + S++E
Sbjct: 285 GMDLRMLTYFG-GKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 350 bits (899), Expect = e-120
Identities = 70/367 (19%), Positives = 136/367 (37%), Gaps = 29/367 (7%)
Query: 2 EETKVQVMMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASA 61
T + + + + + VV+ A L + + + T+ LA+
Sbjct: 4 NSTAEPTVAARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAG--ARTVKALAAR 61
Query: 62 LKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSP 121
P L R++R L+ + +E + F T + L A+ L +
Sbjct: 62 TDTRPEALLRLIRHLVAIGLLEEDAPGE----FVPTEVGELLADDHPAAQRAWHDLTQAV 117
Query: 122 VML-APWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAII 180
+ L + G ++ +GK + A + +ACD +A A
Sbjct: 118 ARADISFTRL-PDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPA 176
Query: 181 EGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHG 233
+ + ++D+GG G + + P + ++ V A
Sbjct: 177 AAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDR 234
Query: 234 VEHVGGDMFDGVP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292
V+ V GD F+ +P +ADA I+ +VL +W D + ++IL C EA+ + G+++I E
Sbjct: 235 VDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEAL-EPGGRILIHERDDLH 293
Query: 293 DDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI-----HAVQ 347
++ + LD+ M+ G R+ ++WD + AG + +
Sbjct: 294 ENSFN----EQFTELDLRMLVFLG-GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDL 348
Query: 348 SLIEAFP 354
SL+ P
Sbjct: 349 SLLVLAP 355
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 346 bits (890), Expect = e-119
Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 28/353 (7%)
Query: 10 MKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLL 69
M A + + V G V A LG+A+ +E + LA+A+ D +
Sbjct: 1 MNNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIESG--IDSDETLAAAVGSDAERI 58
Query: 70 QRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHS 129
R+MR L+ + F+ + TP S L+R E + +L A W
Sbjct: 59 HRLMRLLVAFEIFQG----DTRDGYANTPTSH-LLRDVEGSFRDMVLFYGEEFH-AAWTP 112
Query: 130 LGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDG 189
+L +GT F+ A G+D +SY + AM A I F G
Sbjct: 113 ACEALL-SGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNL-AFHEIPRLLD--FRG 168
Query: 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMF 242
+ VD+GG G + + +A P RG+ D + VA V VGGDM
Sbjct: 169 -RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML 227
Query: 243 DGVP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFK 301
VP D ++ ++ D + +++L NC+EA+ G+V+++E I +
Sbjct: 228 QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAM-AGDGRVVVIERTISASEP-----S 281
Query: 302 SVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
+ ++ D+ + G+ R+ +E +L + GF+ I + +I A
Sbjct: 282 PMSVLWDVHLFMACA-GRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = e-100
Identities = 52/358 (14%), Positives = 123/358 (34%), Gaps = 28/358 (7%)
Query: 7 QVMMKKEEDDAKVEIWKYVF-GFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCD 65
+M + + + VF G + +K A+EL + + E P L LA+
Sbjct: 20 HMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEG--PKDLATLAADTGSV 77
Query: 66 PSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLA 125
P L+ ++ L ++ + T + + +
Sbjct: 78 PPRLEMLLETLRQMRVINLEDG-----KWSLTEFADYMFSPTPKEPNLHQTP-----VAK 127
Query: 126 PWHSLGTRVLANGTSA-FDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCP 184
L + A + + K Y + + + + A++ ++E
Sbjct: 128 AMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK 187
Query: 185 EVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHG-------VEHV 237
DG++ ++D+GG G + K FP + +LP + + + + +
Sbjct: 188 --LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGI 245
Query: 238 GGDMF-DGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGV 296
D++ + PEADA + +L+ + + K +A+ + G+++I++ +I++ +
Sbjct: 246 AVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAM-RSGGRLLILDMVIDDPEN- 303
Query: 297 DNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354
N +L M + + +L G+ + + + P
Sbjct: 304 PNFDYLSHYILGAGMPFSV--LGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 4e-94
Identities = 63/345 (18%), Positives = 123/345 (35%), Gaps = 30/345 (8%)
Query: 19 VEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIH 78
+ V + A +K AVEL + A+ + + LA + ++ + +L+
Sbjct: 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQG--IESSQSLAQKCQTSERGMRMLCDYLVI 65
Query: 79 LKFFKEVPTSQGSMAFQQTPLSRRLMRHG-ENNMAAFILLESSPVMLAPWHSLGTRVLAN 137
+ F + ++ T S + + + I SP++ ++ L VL
Sbjct: 66 IGFMTKQAE-----GYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVL-K 119
Query: 138 GTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIG 197
G +A + AM+ + I + E ++DI
Sbjct: 120 GGTAISSEGTLS------PEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDIS 173
Query: 198 GNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHG-------VEHVGGDMFDGV--PEA 248
+ G + + P D V+ VA++ + G F+ +
Sbjct: 174 ASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDY 233
Query: 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD 308
D ++ LH + C ++L+ K A+ +GKVI+ + I D +
Sbjct: 234 DLVLLPNFLHHFDVATCEQLLRKIKTAL-AVEGKVIVFDFIP-NSDRITPPD---AAAFS 288
Query: 309 MVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH-AVQSLIEA 352
+VM+A T G + E++ + AGFS + S+ Q +I A
Sbjct: 289 LVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 275 bits (706), Expect = 6e-91
Identities = 58/355 (16%), Positives = 114/355 (32%), Gaps = 28/355 (7%)
Query: 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRI 72
+A+ + FG V + ++ GI + + K TL E++ Q +
Sbjct: 11 TAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVL 70
Query: 73 MRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGT 132
+ + + + + L+ + MA + + V L
Sbjct: 71 LEASLTIGTILL---EED--RYVLAKAGWFLLN---DKMARVNMEFNHDVNYQGLFHL-E 121
Query: 133 RVLANGTSAFDKAHGK--DVWSYAAADAAHSKLINDA-MACDTRLAMRAIIEGCPEVFDG 189
L NG K G+ ++ + + + + +E
Sbjct: 122 EALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHH 179
Query: 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMF 242
+ L+DIGGN G + + DLP + + K + G ++
Sbjct: 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLL 239
Query: 243 DGVP----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN 298
D DA + L + ++E I IL ++I KD KV I+E + +
Sbjct: 240 DRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKD-SKVYIMETLWDRQRYETA 298
Query: 299 KFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAV-QSLIEA 352
+ ++ L MA+ N K + + AG I + S+++
Sbjct: 299 SYCLTQISLYFTAMANGN-SKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 2e-90
Identities = 67/353 (18%), Positives = 129/353 (36%), Gaps = 39/353 (11%)
Query: 1 MEETKVQVMMKKEEDDAKV----EIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLN 56
M + V+ + + ED A + ++ K + A++ AV + + + T
Sbjct: 4 MNASAVETIYESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT---GRTPA 60
Query: 57 ELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRR-LMRHGENNMAAFI 115
E+A++ ++ L L + AF+ T L+ R L + + +
Sbjct: 61 EVAASFGMVEGKAAILLHALAALGLLTKEGD-----AFRNTALTERYLTTTSADYIGPIV 115
Query: 116 LLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLA 175
+ W LG + + +K S A D NDAM ++
Sbjct: 116 EH--QYLQWDNWPRLGEILRS------EKPLAFQQESRFAHDTRARDAFNDAMVRLSQPM 167
Query: 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHG-- 233
+ + E F T++D+ G GT L + + P++ G +DLP A K
Sbjct: 168 VDVVSELGV--FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAH 225
Query: 234 -----VEHVGGDMFDGVP----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVI 284
VE ++ D AD ++ LH + E +++ + + K G ++
Sbjct: 226 DLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLV-KPGGALL 284
Query: 285 IVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337
I+ + +D ++ + MM +TN G+ V+R AG +
Sbjct: 285 ILTMTMNDDRVTP----ALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV 333
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 29/183 (15%)
Query: 164 INDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRT-LTKAFPRIRGINFDLP 222
I+ +R ++ + P G +D G G + L F + ++
Sbjct: 55 ISSIDINSSRKFLQRFLREGPN-KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT-E 112
Query: 223 HVVCVAEKCHG------VEHVGGDMFDGVPEA---DAAIIKWVLHDWGDDECIKILKNCK 273
+ A+ G + + D PE D I+WV+ D + L+ CK
Sbjct: 113 DFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK 172
Query: 274 EAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA 333
++ + G ++I + + +E +D+ SV R L ++ A
Sbjct: 173 GSL-RPNGIIVIKDNMAQEGVILDDVDSSV----------------CRDLDVVRRIICSA 215
Query: 334 GFS 336
G S
Sbjct: 216 GLS 218
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 2e-05
Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 38/223 (17%)
Query: 127 WHSLGTRVLANGTSAF-DKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPE 185
W + T L + + KA + W A + IEG
Sbjct: 34 WKAELTGDLYDPEKGWYGKA--LEYWRTVPAT-------VSGVLGGMDHVHDVDIEGSRN 84
Query: 186 VFDGI-----ETLVDIGGNDGTTLRTL-TKAFPRIRGINFDLPHVVCVAEKCHG---VEH 236
+ +D G G + L TK + + + + G +
Sbjct: 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKF 144
Query: 237 VGGDMFDGVPEA---DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293
+ M D +I+W D + +K K+C++A+ G + E D
Sbjct: 145 ILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL-TPNGYIFFKENCSTGD 203
Query: 294 DGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336
R ++D + T S + + ++G
Sbjct: 204 ----------RFLVDKEDSSLTR-----SDIHYKRLFNESGVR 231
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 12/153 (7%)
Query: 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDM----FD 243
+++ G G L A + GI + + +A++ GD
Sbjct: 47 GNVLEFGVGTGNLTNKLLLAGRTVYGI--EPSREMRMIAKEKLPKEFSITEGDFLSFEVP 104
Query: 244 GVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSV 303
D + + H DDE + + + GK++ + I + D D ++
Sbjct: 105 T--SIDTIVSTYAFHHLTDDEKNVAIAKYSQLL-NKGGKIVFADTIFADQDAYDKTVEAA 161
Query: 304 RLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336
+ + + + GF
Sbjct: 162 KQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.83 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.76 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.76 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.75 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.75 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.75 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.74 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.74 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.74 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.73 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.72 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.72 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.72 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.72 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.72 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.71 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.7 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.7 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.7 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.7 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.69 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.67 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.67 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.67 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.65 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.65 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.64 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.63 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.63 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.63 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.62 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.62 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.62 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.61 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.59 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.59 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.59 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.58 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.57 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.57 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.56 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.56 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.55 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.55 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.54 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.54 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.54 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.53 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.53 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.53 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.51 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.51 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.5 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.49 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.49 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.48 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.46 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.46 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.45 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.45 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.45 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.43 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.43 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.43 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.41 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.41 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.4 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.39 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.39 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.38 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.38 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.38 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.37 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.36 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.35 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.35 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.34 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.34 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.34 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.33 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.33 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.32 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.32 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.32 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.32 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.32 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.32 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.31 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.3 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.29 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.28 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.28 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.28 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.28 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.27 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.27 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.27 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.26 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.26 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.26 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.25 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.24 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.24 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.23 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.23 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.23 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.23 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.23 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.22 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.2 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.2 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.2 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.18 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.18 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.18 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.17 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.17 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.17 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.16 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.16 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.16 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.16 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.15 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.15 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.14 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.14 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.14 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.13 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.13 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.13 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.1 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.09 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.09 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.08 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.08 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.08 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.07 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.06 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.06 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.05 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.05 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.04 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.04 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.04 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.02 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.02 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.02 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.02 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.02 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.01 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.01 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.0 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.0 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.0 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.99 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.98 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.98 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.98 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.98 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.98 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.97 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.97 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.96 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.96 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.95 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.95 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.95 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.95 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.95 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.93 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.93 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.92 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.9 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.88 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.88 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.88 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.83 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.83 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.82 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.82 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.8 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.8 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.77 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.74 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.74 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.73 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.73 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.7 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.68 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.65 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.6 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.6 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.58 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.58 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.58 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.53 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.53 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.53 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.53 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.5 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.49 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.49 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.45 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.43 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.43 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.41 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.41 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.38 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.37 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.36 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.36 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.33 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.32 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.32 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.31 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.3 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.25 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.25 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.2 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.1 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.09 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.08 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.06 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.0 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.0 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.99 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.97 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.97 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.93 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.8 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.77 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.75 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.72 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.7 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.66 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.64 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.64 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 97.62 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 97.55 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.54 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.52 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.51 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.49 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.48 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.47 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.41 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.41 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.32 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 97.23 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 97.17 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 97.11 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 97.05 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 97.04 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 97.02 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 97.01 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 96.93 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.91 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 96.9 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.88 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.85 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 96.84 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 96.84 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 96.84 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 96.83 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.83 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 96.81 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.8 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 96.78 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 96.76 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 96.75 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 96.71 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.71 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 96.7 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 96.64 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 96.59 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 96.58 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.58 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 96.53 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 96.52 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 96.47 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.45 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 96.4 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 96.38 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.36 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 96.36 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 96.34 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 96.33 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 96.32 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 96.26 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 96.22 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 96.22 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 96.22 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.19 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 96.18 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 96.17 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.15 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 96.12 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 96.09 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 96.09 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 96.08 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 95.97 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 95.92 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 95.92 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 95.9 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 95.9 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 95.89 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 95.88 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 95.83 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 95.81 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 95.79 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 95.79 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 95.79 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 95.78 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 95.77 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 95.76 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 95.75 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 95.74 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 95.71 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 95.69 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 95.66 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 95.66 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.65 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 95.65 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 95.61 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 95.59 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 95.59 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 95.58 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 95.56 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 95.56 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 95.56 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 95.54 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 95.53 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 95.53 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 95.51 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 95.5 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 95.48 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 95.47 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 95.47 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 95.47 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.46 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 95.42 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 95.36 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 95.34 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 95.33 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 95.33 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 95.32 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 95.3 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 95.29 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 95.28 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 95.25 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 95.25 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 95.25 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 95.21 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 95.18 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 95.17 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 95.09 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 95.09 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 95.08 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 95.07 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 95.05 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 95.04 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 94.83 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 94.81 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 94.75 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.59 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 94.56 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 94.55 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 94.51 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 94.49 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 94.42 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 94.34 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 94.32 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 94.29 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 94.14 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 94.14 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 94.13 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 94.13 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 94.08 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 94.06 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 94.03 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 93.87 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 93.82 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 93.77 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 93.74 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 93.71 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 93.68 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 93.6 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 93.5 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 93.33 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 93.32 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 93.28 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 93.22 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 93.2 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 93.07 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 92.98 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 92.97 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 92.7 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 92.63 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 92.57 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 92.56 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 92.47 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 92.32 | |
| 2w57_A | 150 | Ferric uptake regulation protein; gene regulation, | 92.22 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 91.88 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 91.87 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 91.52 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 91.48 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 91.42 | |
| 2p8t_A | 200 | Hypothetical protein PH0730; pyrococcus horikoshii | 91.18 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 90.54 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 90.52 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 90.51 | |
| 1cf7_A | 76 | Protein (transcription factor E2F-4); E2F, winged- | 90.48 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 90.24 | |
| 2o0m_A | 345 | Transcriptional regulator, SORC family; structural | 90.23 | |
| 2pjp_A | 121 | Selenocysteine-specific elongation factor; SELB, p | 90.14 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 90.02 | |
| 3eyy_A | 145 | Putative iron uptake regulatory protein; NUR, nick | 89.74 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 89.59 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 89.39 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 89.31 | |
| 1bia_A | 321 | BIRA bifunctional protein; transcription regulatio | 89.08 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 88.86 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 88.66 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 88.63 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 88.49 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.42 | |
| 4ets_A | 162 | Ferric uptake regulation protein; metal binding pr | 88.29 | |
| 2p5k_A | 64 | Arginine repressor; DNA-binding domain, winged hel | 88.25 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 88.13 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 88.12 | |
| 3rkx_A | 323 | Biotin-[acetyl-COA-carboxylase] ligase; biotin pro | 88.05 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 88.0 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 87.86 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 87.8 | |
| 3maj_A | 382 | DNA processing chain A; MCSG, PSI-2, structural ge | 87.42 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 87.31 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 87.3 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 87.2 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 86.69 | |
| 2vxz_A | 165 | Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py | 86.67 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 86.31 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 85.84 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 85.5 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 85.43 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 84.83 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 84.82 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 84.79 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-57 Score=419.26 Aligned_cols=334 Identities=21% Similarity=0.382 Sum_probs=297.7
Q ss_pred ecccccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC
Q 018565 9 MMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS 88 (354)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~ 88 (354)
|.+.|. ++...|+++++||+.+++|++|+||||||.|.+.++|+|++|||+++|++++.++|+||+|++.|++++...
T Consensus 1 M~~~e~-~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~- 78 (353)
T 4a6d_A 1 MGSSED-QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETR- 78 (353)
T ss_dssp CCTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE-
T ss_pred CCChhH-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEecc-
Confidence 344444 778889999999999999999999999999987557999999999999999999999999999999986542
Q ss_pred CCCceEecCcccc-hhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcC---CChhHHHhhChHHHHHH
Q 018565 89 QGSMAFQQTPLSR-RLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHG---KDVWSYAAADAAHSKLI 164 (354)
Q Consensus 89 ~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~ 164 (354)
++++.|++|+.++ ++.+++|.+++.++.+.. +..+..|.+|.+++++++ +++...+| .++|+++.++++....|
T Consensus 79 ~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f 156 (353)
T 4a6d_A 79 GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQF 156 (353)
T ss_dssp TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHH
T ss_pred CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHH
Confidence 1245899999986 788888889999887763 467889999999999997 47777776 36899999999999999
Q ss_pred HHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc------CCCeEEee
Q 018565 165 NDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK------CHGVEHVG 238 (354)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~v~~~~ 238 (354)
.++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.
T Consensus 157 ~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~ 234 (353)
T 4a6d_A 157 MQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQE 234 (353)
T ss_dssp HHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeec
Confidence 99999988888889999999 88889999999999999999999999999999999999988764 58999999
Q ss_pred cCCCC-CCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC
Q 018565 239 GDMFD-GVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK 317 (354)
Q Consensus 239 ~d~~~-~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (354)
+||++ +.|++|+|+++++||+|+|+++.++|++++++|+| ||+|+|+|.+.+++.. .+ .....+|+.|+.. .+
T Consensus 235 gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p-gg~lli~e~~~~~~~~-~~---~~~~~~dl~ml~~-~~ 308 (353)
T 4a6d_A 235 GDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP-GGGILVIESLLDEDRR-GP---LLTQLYSLNMLVQ-TE 308 (353)
T ss_dssp SCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT-TCEEEEEECCCCTTSC-CC---HHHHHHHHHHHHS-SS
T ss_pred CccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC-CCEEEEEEeeeCCCCC-CC---HHHHHHHHHHHHh-CC
Confidence 99998 56779999999999999999999999999999999 9999999999887654 32 2456789999988 89
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
|++||.+||.++|+++||+.+++++++...++|+|+|
T Consensus 309 g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 309 GQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999999999999999999999999999999999997
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=397.57 Aligned_cols=341 Identities=33% Similarity=0.587 Sum_probs=300.2
Q ss_pred cccccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCC-CCCCHHHHHhHcCC--Ccc---cHHHHHHHHhccCcee
Q 018565 10 MKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKG-SPITLNELASALKC--DPS---LLQRIMRFLIHLKFFK 83 (354)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~t~~elA~~~g~--~~~---~l~~lL~~L~~~g~l~ 83 (354)
...|..++...+++++++++.+++|++|+++|||+.|.+.+ +|+|++|||+++|+ +|+ .++||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 55667788999999999999999999999999999998743 69999999999998 888 9999999999999999
Q ss_pred eccCC--CC--CceEecCcccchhhcC-CCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhCh
Q 018565 84 EVPTS--QG--SMAFQQTPLSRRLMRH-GENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADA 158 (354)
Q Consensus 84 ~~~~~--~~--~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~ 158 (354)
+.... +| ++.|++|+.++.|..+ .+.++++++.+..++..+..|.+|.+++++++ ++|+..+|.++|+|+.++|
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~ 171 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDP 171 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCH
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCH
Confidence 87210 01 2689999999988765 46689998887666778899999999999987 6899999999999999999
Q ss_pred HHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEee
Q 018565 159 AHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVG 238 (354)
Q Consensus 159 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 238 (354)
+..+.|+++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|++++.+++.++++++.
T Consensus 172 ~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 250 (364)
T 3p9c_A 172 RFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVG 250 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEe
Confidence 99999999999988777788888876 25678999999999999999999999999999999999999998888999999
Q ss_pred cCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCc
Q 018565 239 GDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKG 318 (354)
Q Consensus 239 ~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 318 (354)
+|+++++|+.|+|++++++|+|+++++.++|++++++||| ||+|+|+|.+.++... ..........+++.|+..+.+|
T Consensus 251 ~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p-gG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~m~~~~~~g 328 (364)
T 3p9c_A 251 GDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA-HGKVVLVQCILPVNPE-ANPSSQGVFHVDMIMLAHNPGG 328 (364)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT-TCEEEEEECCBCSSCC-SSHHHHHHHHHHHHHHHHCSSC
T ss_pred CCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCC-cchhhhhHHHhHHHHHhcccCC
Confidence 9999977767999999999999999999999999999999 9999999999877544 3212223356788888544789
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 319 KERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 319 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+.||.++|.++|+++||+.++++++++..++||++|
T Consensus 329 ~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 329 RERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 999999999999999999999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-52 Score=386.19 Aligned_cols=341 Identities=32% Similarity=0.602 Sum_probs=296.0
Q ss_pred cccccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhC---CCCCCHHHHHhHcC-CCcc---cHHHHHHHHhccCce
Q 018565 10 MKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEK---GSPITLNELASALK-CDPS---LLQRIMRFLIHLKFF 82 (354)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~---~~~~t~~elA~~~g-~~~~---~l~~lL~~L~~~g~l 82 (354)
...+..+...++++++.+++.+++|++|+++|||+.|.+. ++|+|++|||+++| .+|. .+.||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 4446777889999999999999999999999999999873 24799999999998 4665 999999999999999
Q ss_pred eeccC--CCC--CceEecCcccchhhcC-CCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhC
Q 018565 83 KEVPT--SQG--SMAFQQTPLSRRLMRH-GENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAAD 157 (354)
Q Consensus 83 ~~~~~--~~~--~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~ 157 (354)
++... .+| +++|++|+.++.|..+ ++.++++++.+..++..+..|.+|.++++++. ++|+..+|.++|+|+.++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~ 172 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTD 172 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTC
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhC
Confidence 98620 001 2689999999977654 46789999887766778899999999999987 689999999999999999
Q ss_pred hHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEe
Q 018565 158 AAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHV 237 (354)
Q Consensus 158 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 237 (354)
|+....|+++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|++++.+++.++++++
T Consensus 173 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 251 (368)
T 3reo_A 173 HRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHL 251 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEE
Confidence 999999999999988877788888876 2567799999999999999999999999999999999999999888899999
Q ss_pred ecCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC
Q 018565 238 GGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK 317 (354)
Q Consensus 238 ~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (354)
.+|+++++|+.|+|++.+++|+|+++++.++|++++++||| ||+|+|+|.+.++... ..........+++.|+..+.+
T Consensus 252 ~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~ 329 (368)
T 3reo_A 252 GGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD-HGKVIVAEYILPPSPD-PSIATKVVIHTDALMLAYNPG 329 (368)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT-TCEEEEEECCCCSSCC-CCHHHHHHHHHHHHHHHHSSB
T ss_pred ecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCC-CchhhhHHHhhhHHHHhhcCC
Confidence 99999977767999999999999999999999999999999 9999999999876554 321222345678888765368
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
|+.||.++|.++|+++||+.+++.+.+...++||++|
T Consensus 330 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 9999999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=382.62 Aligned_cols=325 Identities=24% Similarity=0.430 Sum_probs=291.5
Q ss_pred ccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc
Q 018565 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM 92 (354)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~ 92 (354)
...+...++++++.+++.+++|++++++|||+.|.+ +|+|++|||+++|++++.++||||+|++.|+|++ + ++
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~----~~ 90 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-S----DG 90 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-E----TT
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-c----CC
Confidence 345678889999999999999999999999999986 7999999999999999999999999999999999 4 38
Q ss_pred eEecCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhch
Q 018565 93 AFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDT 172 (354)
Q Consensus 93 ~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 172 (354)
.|++|+.++.|.++++.++.+++.+..++..+..|.+|+++++++. ++|...+|.++|+|+.++|+....|.++|....
T Consensus 91 ~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~ 169 (348)
T 3lst_A 91 RFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVS 169 (348)
T ss_dssp EEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhh
Confidence 9999999998888877788988877656667899999999999887 578888999999999999999999999999988
Q ss_pred hhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-----CCCeEEeecCCCCCCCc
Q 018565 173 RLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-----CHGVEHVGGDMFDGVPE 247 (354)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~d~~~~~~~ 247 (354)
....+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.++...+. .++++++.+|+++++|+
T Consensus 170 ~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~ 247 (348)
T 3lst_A 170 AAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH 247 (348)
T ss_dssp HTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCC
T ss_pred hhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCC
Confidence 888888999888 78889999999999999999999999999999999877763221 57899999999987779
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++.+++|+|+++++.++|++++++||| ||+|+|.|.+.++... .. ....+++.++.. .+++.+|.++|.
T Consensus 248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp-gG~l~i~e~~~~~~~~-~~----~~~~~d~~~~~~-~~~~~~t~~e~~ 320 (348)
T 3lst_A 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPA-HGRVLVIDAVVPEGND-AH----QSKEMDFMMLAA-RTGQERTAAELE 320 (348)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHTCCT-TCEEEEEECCBCSSSS-CC----HHHHHHHHHHHT-TSCCCCBHHHHH
T ss_pred CcEEEEehhccCCCHHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCC-cc----hhhhcChhhhhc-CCCcCCCHHHHH
Confidence 9999999999999999999999999999999 9999999998876543 21 345677888776 888999999999
Q ss_pred HHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 328 YVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
++|+++||+++++++.+...++|+++|
T Consensus 321 ~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 321 PLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 999999999999999878899999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-51 Score=379.84 Aligned_cols=322 Identities=27% Similarity=0.464 Sum_probs=292.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCce-E
Q 018565 16 DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMA-F 94 (354)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~-y 94 (354)
+...++++++.+++.+++|++++++|||+.|.+ +|+|++|||+++|++++.++||||+|++.|+|++.+ ++. |
T Consensus 37 ~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~----~~~~y 110 (369)
T 3gwz_A 37 AAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG----HDDLF 110 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS----STTEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC----CCceE
Confidence 467789999999999999999999999999986 799999999999999999999999999999999976 378 9
Q ss_pred ecCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhh
Q 018565 95 QQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRL 174 (354)
Q Consensus 95 ~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~ 174 (354)
++|+.++.|.++++.++.+++.+..++..+..|.+|.++++++. ++|...+|.++|+|+.++|+....|..+|......
T Consensus 111 ~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~ 189 (369)
T 3gwz_A 111 AQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLT 189 (369)
T ss_dssp ECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 99999998888888788888887656557789999999999987 57888899899999999999999999999998887
Q ss_pred hHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCCCCC-
Q 018565 175 AMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGVP- 246 (354)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~~- 246 (354)
..+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++|+++.+|+++++|
T Consensus 190 ~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~ 267 (369)
T 3gwz_A 190 EAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPD 267 (369)
T ss_dssp HHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS
T ss_pred hHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC
Confidence 7888888888 77889999999999999999999999999999999988888774 4789999999998777
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
+||+|++.+++|+|+++.+.++|++++++||| ||+++|.|.+.++... . . ...+++.|+.. .+++.+|.++|
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p-gG~l~i~e~~~~~~~~-~--~---~~~~d~~~~~~-~~g~~~t~~e~ 339 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKP-DSRLLVIDNLIDERPA-A--S---TLFVDLLLLVL-VGGAERSESEF 339 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT-TCEEEEEEEBCCSSCC-H--H---HHHHHHHHHHH-HSCCCBCHHHH
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCC-C--c---hhHhhHHHHhh-cCCccCCHHHH
Confidence 69999999999999999999999999999999 9999999999877654 2 1 45678888777 78999999999
Q ss_pred HHHHHHcCCceeEEEE-cCCceeEEEEeC
Q 018565 327 DYVLRQAGFSRYNITS-IHAVQSLIEAFP 354 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 354 (354)
.++|+++||+++++++ .++..++|+++|
T Consensus 340 ~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 340 AALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 9999999999999999 678899999986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=375.44 Aligned_cols=317 Identities=23% Similarity=0.343 Sum_probs=281.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 18 KVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 18 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+.++++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|++++.++||||+|++.|++++.+ ++.|++|
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~----~~~y~~t 79 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDG----QGVYGLT 79 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT----TSBEEEC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecC----CCeEEcC
Confidence 4467899999999999999999999999986 799999999999999999999999999999999986 4899999
Q ss_pred cccchhhcCCCcchHHHHHHhcCchhh-hhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhH
Q 018565 98 PLSRRLMRHGENNMAAFILLESSPVML-APWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAM 176 (354)
Q Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 176 (354)
+.++.|.++++.++.+++.+..++..+ ..|.+|+++++++. ++|...+|.++|+++.++|+....|..+|........
T Consensus 80 ~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 158 (332)
T 3i53_A 80 EFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDY 158 (332)
T ss_dssp TTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhH
Confidence 999988877777888888765433345 78999999999987 5788889989999999999999999999998877666
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCCCCC-cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGVP-EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~~-~~ 248 (354)
+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .++++++.+|+++++| +|
T Consensus 159 ~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~ 236 (332)
T 3i53_A 159 TGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGA 236 (332)
T ss_dssp TTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSC
T ss_pred HHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCC
Confidence 77777787 67789999999999999999999999999999999999888774 4789999999998777 69
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|++++++|+|+++++.++|++++++|+| ||+|+|.|.+.++. . . ...+++.|+.. .+++.+|.++|.+
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~-~-~------~~~~d~~~~~~-~~~~~~t~~e~~~ 306 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGS-GGVVLVIEAVAGDE-H-A------GTGMDLRMLTY-FGGKERSLAELGE 306 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTT-TCEEEEEECCCC-----C------CHHHHHHHHHH-HSCCCCCHHHHHH
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCC-CCEEEEEeecCCCC-C-c------cHHHHHHHHhh-CCCCCCCHHHHHH
Confidence 999999999999999999999999999999 99999999887765 3 2 24677777776 7889999999999
Q ss_pred HHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 329 VLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+|+++||+.+++++.+. .++|++++
T Consensus 307 ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 307 LAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHCCCEEEEEEECCC-cEEEEEee
Confidence 99999999999999988 99999975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=374.65 Aligned_cols=341 Identities=37% Similarity=0.677 Sum_probs=295.2
Q ss_pred ccccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCC---CcccHHHHHHHHhccCceeec--
Q 018565 11 KKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKC---DPSLLQRIMRFLIHLKFFKEV-- 85 (354)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~---~~~~l~~lL~~L~~~g~l~~~-- 85 (354)
+.+++++..++++++.+++.+++|++++++|||+.|...++|.|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~ 83 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIV 83 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecc
Confidence 467889999999999999999999999999999999874359999999999999 588999999999999999987
Q ss_pred ---c-CCCCCceEecCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCC-CchhhhhcCCChhHHHhhChHH
Q 018565 86 ---P-TSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANG-TSAFDKAHGKDVWSYAAADAAH 160 (354)
Q Consensus 86 ---~-~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~ 160 (354)
+ ..+.++.|++|+.+++|.+++|.++++++.+..++..+..|.+|+++++++. .++|+..+|.++|+++.++|+.
T Consensus 84 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~ 163 (358)
T 1zg3_A 84 KGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSES 163 (358)
T ss_dssp CCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGH
T ss_pred cccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhh
Confidence 2 1000279999999999998888889999988766677899999999999883 2688888899999999999999
Q ss_pred HH--HHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEee
Q 018565 161 SK--LINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVG 238 (354)
Q Consensus 161 ~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 238 (354)
.. .|+..|........ .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..+++++.
T Consensus 164 ~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 242 (358)
T 1zg3_A 164 STLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG 242 (358)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEE
T ss_pred hhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEe
Confidence 99 99999998776555 6777772125677899999999999999999999999999999999999888766799999
Q ss_pred cCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCC--CceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccC
Q 018565 239 GDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKD--KGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTN 316 (354)
Q Consensus 239 ~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~--gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (354)
+|+++++|+||+|++++++|+|+++.+.++|++++++|+|+ ||+++|.|...++... .+........+++.|+.. .
T Consensus 243 ~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~-~ 320 (358)
T 1zg3_A 243 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD-DRGLTELQLDYDLVMLTM-F 320 (358)
T ss_dssp CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCS-CHHHHHHHHHHHHHHHHH-H
T ss_pred CccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCc-cchhhhHHHhhCHHHhcc-C
Confidence 99999877899999999999999999999999999999962 7999999999876544 211122445677777765 7
Q ss_pred CcccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 317 KGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 317 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+|+.++.++|.++|+++||+.+++++.++..++|+++|
T Consensus 321 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 88999999999999999999999999988899999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=366.34 Aligned_cols=319 Identities=25% Similarity=0.420 Sum_probs=285.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEe
Q 018565 16 DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQ 95 (354)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~ 95 (354)
.+...+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|++++.++||||+|++.|+|++.+ ++.|+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~----~~~y~ 80 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT----RDGYA 80 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TTEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC----CCeEe
Confidence 567889999999999999999999999999976 799999999999999999999999999999999886 48999
Q ss_pred cCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhh
Q 018565 96 QTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLA 175 (354)
Q Consensus 96 ~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 175 (354)
+|+.++.|. ++|.++++++.+..++.. ..|.+|+++++++. ++|+..+|.++|+++.++|+....|+++| ......
T Consensus 81 ~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~ 156 (334)
T 2ip2_A 81 NTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLA 156 (334)
T ss_dssp ECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHH
T ss_pred cCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHH
Confidence 999999888 777789998887765444 89999999999987 58888889999999999999999999999 877777
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCCCCCc-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGVPE- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~~~- 247 (354)
.+.+++.++ +.+ .+|||||||+|..+..+++++|+.+++++|++.+++.+++ .++++++.+|+++++|+
T Consensus 157 ~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 233 (334)
T 2ip2_A 157 FHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSN 233 (334)
T ss_dssp HHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSS
T ss_pred HHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCC
Confidence 788888887 666 9999999999999999999999999999999888887764 47899999999987665
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++.+++|+|+++.+.++|++++++|+| ||+++|.|...++... . .....+++.++.. .+|+.++.++|.
T Consensus 234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~-~----~~~~~~~~~~~~~-~~~~~~t~~e~~ 306 (334)
T 2ip2_A 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAG-DGRVVVIERTISASEP-S----PMSVLWDVHLFMA-CAGRHRTTEEVV 306 (334)
T ss_dssp CSEEEEESCGGGCCHHHHHHHHHHHHHHSCT-TCEEEEEECCBCSSSC-C----HHHHHHHHHHHHH-HSCCCCBHHHHH
T ss_pred CCEEEEchhccCCCHHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCC-c----chhHHhhhHhHhh-CCCcCCCHHHHH
Confidence 9999999999999999999999999999999 9999999998776443 2 1345677777765 678899999999
Q ss_pred HHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 328 YVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
++++++||+.+++++.++..++|+++|
T Consensus 307 ~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 307 DLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 999999999999999988899999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=368.87 Aligned_cols=339 Identities=33% Similarity=0.654 Sum_probs=293.8
Q ss_pred ecccccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCC---cccHHHHHHHHhccCceeec
Q 018565 9 MMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCD---PSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~---~~~l~~lL~~L~~~g~l~~~ 85 (354)
..+.+++++..++++++.+++.+++|++++++|||+.|...++|.|++|||+++|++ ++.++||||+|++.|+|++.
T Consensus 8 ~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 8 RKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 456788899999999999999999999999999999998743599999999999995 77999999999999999987
Q ss_pred cCCCCCceEecCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHh-cCCCchhhhhcCCChhHHHhhChHHHHHH
Q 018565 86 PTSQGSMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVL-ANGTSAFDKAHGKDVWSYAAADAAHSKLI 164 (354)
Q Consensus 86 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 164 (354)
. ++++.|++|+.+++|.+++|.++++++.+..++..+..|.+|+++++ ++. ++|...+|.++|+++.++|+....|
T Consensus 88 ~--~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f 164 (352)
T 1fp2_A 88 T--KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSF 164 (352)
T ss_dssp E--SSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred c--CCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHH
Confidence 2 01389999999999998888889999888766677889999999999 665 6898889999999999999999999
Q ss_pred HHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCC
Q 018565 165 NDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDG 244 (354)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~ 244 (354)
+.+|........+. ++.+++.+.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++.++++++.+|++++
T Consensus 165 ~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~ 243 (352)
T 1fp2_A 165 NDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS 243 (352)
T ss_dssp HHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC
T ss_pred HHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCC
Confidence 99999887766566 66672126678899999999999999999999999999999999999988766799999999988
Q ss_pred CCcceEEEeccccccCChHHHHHHHHHHHHhcCCC--CceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 245 VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKD--KGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 245 ~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~--gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
+|+||+|++.+++|+|+++.+.++|++++++|||+ ||+++|.|...++... .+........+++.|+.. +++.++
T Consensus 244 ~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~--~g~~~t 320 (352)
T 1fp2_A 244 IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD-ENQVTQIKLLMDVNMACL--NGKERN 320 (352)
T ss_dssp CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTS-CHHHHHHHHHHHHHGGGG--TCCCEE
T ss_pred CCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCC-ccchhhhHhhccHHHHhc--cCCCCC
Confidence 77899999999999999999999999999999962 7999999998876543 211112344567777653 488899
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 323 LKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
.++|.++++++||+.+++++.++..++|+++|
T Consensus 321 ~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 321 EEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 99999999999999999999888899999987
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=371.29 Aligned_cols=343 Identities=29% Similarity=0.550 Sum_probs=278.5
Q ss_pred eeeecccccchHHHHHH--HHHhhhHHHHHHHHHHHcChhhhhhhCCC-C---CCHHHHHhHcCC------CcccHHHHH
Q 018565 6 VQVMMKKEEDDAKVEIW--KYVFGFTNMAVVKCAVELGIAEAVEEKGS-P---ITLNELASALKC------DPSLLQRIM 73 (354)
Q Consensus 6 ~~~~~~~~~~~~~~~l~--~~~~~~~~~~~l~~a~~lglf~~L~~~~~-~---~t~~elA~~~g~------~~~~l~~lL 73 (354)
.++....+++++..+++ +++.+++.+++|++++++|||+.|.+. + | .|++|||+++|+ +++.++|||
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlL 89 (372)
T 1fp1_D 11 NQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-TPPGAFMSPSEIASKLPASTQHSDLPNRLDRML 89 (372)
T ss_dssp --------CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHH
T ss_pred cccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHH
Confidence 34566778888898999 999999999999999999999999863 3 6 999999999999 678999999
Q ss_pred HHHhccCceeecc---CCCC--CceEecCcccchhhcCCC-cchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcC
Q 018565 74 RFLIHLKFFKEVP---TSQG--SMAFQQTPLSRRLMRHGE-NNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHG 147 (354)
Q Consensus 74 ~~L~~~g~l~~~~---~~~~--~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g 147 (354)
|+|++.|+|++.. . +| ++.|++|+.+++|.++++ .++++++.+..++..+..|.+|+++++++..++|+..+|
T Consensus 90 r~L~~~gll~~~~~~~~-~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g 168 (372)
T 1fp1_D 90 RLLASYSVLTSTTRTIE-DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHG 168 (372)
T ss_dssp HHHHHTTSEEEEEEECT-TSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------
T ss_pred HHHhhCCceEecccccC-CCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhC
Confidence 9999999999871 1 11 269999999999988877 688888888766677889999999999883368888889
Q ss_pred CChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhh
Q 018565 148 KDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCV 227 (354)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 227 (354)
.++|+++.++|+....|+.+|........+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~ 247 (372)
T 1fp1_D 169 VTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247 (372)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHh
Confidence 8999999999999999999999887777778888775 256778999999999999999999999999999999999999
Q ss_pred cccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhc
Q 018565 228 AEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLML 307 (354)
Q Consensus 228 a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~ 307 (354)
+++.++++++.+|+++++|.||+|++.+++|+|+++.+.++|++++++||| ||+++|.|...++... .+........+
T Consensus 248 a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~-~~~~~~~~~~~ 325 (372)
T 1fp1_D 248 APPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP-NGKVIIVEFILPEEPN-TSEESKLVSTL 325 (372)
T ss_dssp CCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEECSSCC-SSHHHHHHHHH
T ss_pred hhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC-CCEEEEEEeccCCCCc-cchHHHHHHHh
Confidence 887678999999999987779999999999999999999999999999999 9999999998876544 21111124566
Q ss_pred cHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEc-CCceeEEEEeC
Q 018565 308 DMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI-HAVQSLIEAFP 354 (354)
Q Consensus 308 ~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 354 (354)
++.++.. .+++.++.++|.++|+++||+.+++++. ++..++||++|
T Consensus 326 d~~~~~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 326 DNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHH-HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred hHHHHhc-cCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 7776654 6788999999999999999999999984 45259999987
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-47 Score=354.23 Aligned_cols=327 Identities=16% Similarity=0.172 Sum_probs=266.7
Q ss_pred ccccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC
Q 018565 11 KKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG 90 (354)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~ 90 (354)
+.+.+++..++++++.|++.+++|++++++|||+.|++.++|+|++|||+++|++++.++||||+|++.|+|++++
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~---- 84 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEE---- 84 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET----
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecC----
Confidence 4567889999999999999999999999999999998744799999999999999999999999999999998864
Q ss_pred CceEecCcccchhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcC--CChhHHHhhChHHHHH----H
Q 018565 91 SMAFQQTPLSRRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHG--KDVWSYAAADAAHSKL----I 164 (354)
Q Consensus 91 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~----~ 164 (354)
++|++|+.+++|.++++.+. ++.+. .+..++.|.+|+++++++++ ++...+| .++|+++.++|+.... |
T Consensus 85 -~~y~~t~~s~~L~~~~~~~~--~~~~~-~~~~~~~~~~L~~~lr~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f 159 (363)
T 3dp7_A 85 -DRYVLAKAGWFLLNDKMARV--NMEFN-HDVNYQGLFHLEEALLNGRP-EGLKVFGEWPTIYEGLSQLPEQVQKSWFGF 159 (363)
T ss_dssp -TEEEECHHHHHHHHCHHHHH--HHHHH-HHTTHHHHTTHHHHHHHSSC-GGGGGTCCCSSHHHHGGGSCHHHHHHHHHH
T ss_pred -CEEecccchHHhhCCCcccc--hheee-cHHhhhhHHHHHHHHhcCCC-ccccccCchHhHHHHHhhCHHHHHHHHHHH
Confidence 89999999998887764332 23332 34678999999999999974 6667777 6899999999987663 6
Q ss_pred HHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEe
Q 018565 165 NDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHV 237 (354)
Q Consensus 165 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~ 237 (354)
..+|..... ..++..+. ..+..+|||||||+|.++..+++++|+.+++++|+|++++.+++ .++++++
T Consensus 160 ~~~~~~~~~---~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 234 (363)
T 3dp7_A 160 DHFYSDQSF---GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGH 234 (363)
T ss_dssp HHHTTCCCC---HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEE
T ss_pred HHHhhhhhH---HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEE
Confidence 666654331 22333333 24678999999999999999999999999999999999888775 2589999
Q ss_pred ecCCCCC---CC-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcc-hhhhhhhccHHhh
Q 018565 238 GGDMFDG---VP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNK-FKSVRLMLDMVMM 312 (354)
Q Consensus 238 ~~d~~~~---~~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~-~~~~~~~~~l~~~ 312 (354)
.+|++++ +| +||+|++.+++|+|+++++.++|++++++||| ||+|+|+|.+.++... ... +.......++.++
T Consensus 235 ~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~ 312 (363)
T 3dp7_A 235 GANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK-DSKVYIMETLWDRQRY-ETASYCLTQISLYFTAM 312 (363)
T ss_dssp ECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT-TCEEEEEECCTTSCSS-HHHHHHHHHHHHHHHHS
T ss_pred EccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC-CcEEEEEeeccCCccc-cchhhHHHHhhhhHHhh
Confidence 9999984 66 59999999999999999999999999999999 9999999988876544 210 0011122233334
Q ss_pred cccCCcccCCHHHHHHHHHHcCCceeEEEEcCC-ceeEEEEeC
Q 018565 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSIHA-VQSLIEAFP 354 (354)
Q Consensus 313 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 354 (354)
.. .+++.+|.++|.++|+++||+++++++..+ ..++|+++|
T Consensus 313 ~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 313 AN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp SC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 33 667899999999999999999999997755 589999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=349.94 Aligned_cols=323 Identities=21% Similarity=0.349 Sum_probs=278.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--e
Q 018565 16 DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--A 93 (354)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~ 93 (354)
+...++++++.+++.+++|++++++|||+.|.. +|.|++|||+++|++++.++|+||+|++.|+|++.+ ++ .
T Consensus 15 ~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~----~~~~~ 88 (374)
T 1qzz_A 15 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGE----KQGRP 88 (374)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCC----C-CCC
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeC----CCCeE
Confidence 345679999999999999999999999999975 799999999999999999999999999999999865 36 9
Q ss_pred EecCcccchhhcCCCcchHHHHHHhcCchhh-hhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhch
Q 018565 94 FQQTPLSRRLMRHGENNMAAFILLESSPVML-APWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDT 172 (354)
Q Consensus 94 y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 172 (354)
|++|+.++.|..+++.+++.++.+..++..+ ..|.+|.+.++++. +++...+|.++|+++.++|+....|..+|....
T Consensus 89 y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~ 167 (374)
T 1qzz_A 89 LRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDE 167 (374)
T ss_dssp CEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGS
T ss_pred EEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhh
Confidence 9999999999988888898888766433455 78999999999987 478888899999999999999999999999877
Q ss_pred hhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCCCC
Q 018565 173 RLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGV 245 (354)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~ 245 (354)
....+.+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+|+++++
T Consensus 168 ~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 245 (374)
T 1qzz_A 168 DLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPL 245 (374)
T ss_dssp TTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred HhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcC
Confidence 777788888887 77789999999999999999999999999999999888887764 258999999999866
Q ss_pred Cc-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee--eeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 246 PE-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA--IIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 246 ~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
|. ||+|++.+++|+|+++.+.++|++++++|+| ||+++|.|. ..++... . .....+++.++.. .+++.++
T Consensus 246 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~~-~----~~~~~~~~~~~~~-~~~~~~~ 318 (374)
T 1qzz_A 246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEP-GGRLLVLDRADVEGDGAD-R----FFSTLLDLRMLTF-MGGRVRT 318 (374)
T ss_dssp SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEECCH--------H----HHHHHHHHHHHHH-HSCCCCC
T ss_pred CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC-CcEEEEEechhhcCCCCC-c----chhhhcchHHHHh-CCCcCCC
Confidence 65 9999999999999999889999999999999 999999998 7654432 1 1334567777665 6788999
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCce-----eEEEEeC
Q 018565 323 LKEWDYVLRQAGFSRYNITSIHAVQ-----SLIEAFP 354 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~~~~~-----~~i~~~~ 354 (354)
.++|.++|+++||+++++++.+... ++|+++|
T Consensus 319 ~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 319 RDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 9999999999999999999988777 8999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=346.13 Aligned_cols=322 Identities=21% Similarity=0.367 Sum_probs=281.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 17 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
..+++++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+++..++|+|++|++.|+|++.+ ++.|++
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~----~g~y~~ 92 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA----PGEFVP 92 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE----TTEEEE
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC----CCeEEe
Confidence 36788999999999999999999999999975 799999999999999999999999999999999866 389999
Q ss_pred CcccchhhcCCCcchHHHHHHhcCch-hhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhh
Q 018565 97 TPLSRRLMRHGENNMAAFILLESSPV-MLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLA 175 (354)
Q Consensus 97 t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 175 (354)
|+.+++|.+++|.+++.++.+...+. .+..|.+|.+.++++. +++...+|.++|+++.++|+....|...|.......
T Consensus 93 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~ 171 (360)
T 1tw3_A 93 TEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVA 171 (360)
T ss_dssp CTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 99999999888888988876654333 5688999999999987 467778889999999999999999999999887777
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCCCCCc-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGVPE- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~~~- 247 (354)
.+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++++++.+|+++++|.
T Consensus 172 ~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 249 (360)
T 1tw3_A 172 FDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRK 249 (360)
T ss_dssp THHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSC
T ss_pred HHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCC
Confidence 788888888 77789999999999999999999999999999999888887764 34899999999986665
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee-eCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI-IEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
||+|++.+++|+|+++++.++|++++++|+| ||+++|.|.. .++... . .....+++.++.. .+++.++.++|
T Consensus 250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~~-~----~~~~~~~~~~~~~-~~~~~~t~~e~ 322 (360)
T 1tw3_A 250 ADAIILSFVLLNWPDHDAVRILTRCAEALEP-GGRILIHERDDLHENSF-N----EQFTELDLRMLVF-LGGALRTREKW 322 (360)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHTEEE-EEEEEEEECCBCGGGCC-S----HHHHHHHHHHHHH-HSCCCCBHHHH
T ss_pred ccEEEEcccccCCCHHHHHHHHHHHHHhcCC-CcEEEEEEEeccCCCCC-c----chhhhccHHHhhh-cCCcCCCHHHH
Confidence 9999999999999999889999999999999 9999999988 654432 2 1234567777655 57889999999
Q ss_pred HHHHHHcCCceeEEEEcCCc-----eeEEEEeC
Q 018565 327 DYVLRQAGFSRYNITSIHAV-----QSLIEAFP 354 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~~~-----~~~i~~~~ 354 (354)
.++|+++||+++++++.+.. .++|+++|
T Consensus 323 ~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 323 DGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999999988665 88999875
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=339.60 Aligned_cols=320 Identities=20% Similarity=0.254 Sum_probs=270.1
Q ss_pred ecccccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC
Q 018565 9 MMKKEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS 88 (354)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~ 88 (354)
..+...++.+..+++++.+++.+++|++++++|||+.|. +|.|++|||+++|++++.++||||+|++.|+|++.+
T Consensus 16 ~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-- 90 (352)
T 3mcz_A 16 TEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-- 90 (352)
T ss_dssp CCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC--
Confidence 445566677777999999999999999999999999996 499999999999999999999999999999999987
Q ss_pred CCCceEecCcccc-hhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHH
Q 018565 89 QGSMAFQQTPLSR-RLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDA 167 (354)
Q Consensus 89 ~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (354)
+.|++|+.++ ++.++.|.+++.++.+. ...+..|.+|+++++++.+.+|... .++.++++....|..+
T Consensus 91 ---~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~ 159 (352)
T 3mcz_A 91 ---DAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDA 159 (352)
T ss_dssp ---TEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHH
T ss_pred ---CeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHH
Confidence 7899999997 77777888888887654 3467899999999999976544322 2346788888999999
Q ss_pred hhhchhhhHHHHHhcCCCccCC-CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeec
Q 018565 168 MACDTRLAMRAIIEGCPEVFDG-IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGG 239 (354)
Q Consensus 168 m~~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~ 239 (354)
|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++++++.+++ .++++++.+
T Consensus 160 m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 236 (352)
T 3mcz_A 160 MVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEK 236 (352)
T ss_dssp HHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEEC
T ss_pred HHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 9873332 246788888 656 89999999999999999999999999999999888887764 358999999
Q ss_pred CCCC-C--CCc-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 240 DMFD-G--VPE-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 240 d~~~-~--~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
|+++ + .++ ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|.+.++... .+ .....+++.++..+
T Consensus 237 d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~-~~---~~~~~~~~~~~~~~ 311 (352)
T 3mcz_A 237 NLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP-GGALLILTMTMNDDRV-TP---ALSADFSLHMMVNT 311 (352)
T ss_dssp CTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE-EEEEEEEEECCCTTSS-SS---HHHHHHHHHHHHHS
T ss_pred CcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC-CCEEEEEEeccCCCCC-CC---chHHHhhHHHHhhC
Confidence 9998 4 554 9999999999999999999999999999999 9999999999877654 21 23456788887654
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
.+++.++.++|.++|+++||++++.. .+..+++.++|
T Consensus 312 ~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 312 NHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp TTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred CCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 68899999999999999999999843 35577888775
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=340.52 Aligned_cols=317 Identities=15% Similarity=0.268 Sum_probs=273.0
Q ss_pred eecccccchHHHHHHHHHh-hhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 8 VMMKKEEDDAKVEIWKYVF-GFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 8 ~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
-|.+.++.+...++++++. +++.+++|++++++|||+.|.+ +|.|++|||+++|++++.++||||+|++.|+|++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 98 (359)
T 1x19_A 21 MMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED 98 (359)
T ss_dssp EECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC
Confidence 4667778888999999996 8999999999999999999986 799999999999999999999999999999999986
Q ss_pred CCCCCceEecCcc-cchhhcCCC---cchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChH---
Q 018565 87 TSQGSMAFQQTPL-SRRLMRHGE---NNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAA--- 159 (354)
Q Consensus 87 ~~~~~~~y~~t~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--- 159 (354)
+.|++|+. ++++.++++ .++++++.+. ....++.|.+|+++++++.+ |+++.++|+
T Consensus 99 -----~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~~~~~~p~~~~ 161 (359)
T 1x19_A 99 -----GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FKGQVPYPPVTR 161 (359)
T ss_dssp -----TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CCCSSCSSCCSH
T ss_pred -----CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------CcccccCchhhH
Confidence 79999996 468888877 7888888775 34678899999999998863 455667777
Q ss_pred HHHHHHHHhhhchh-hhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------C
Q 018565 160 HSKLINDAMACDTR-LAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------C 231 (354)
Q Consensus 160 ~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~ 231 (354)
....|...|..... ...+.+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .
T Consensus 162 ~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~ 239 (359)
T 1x19_A 162 EDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA 239 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCC
Confidence 88899999998887 77788888888 77889999999999999999999999999999999888887764 3
Q ss_pred CCeEEeecCCCC-CCCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH
Q 018565 232 HGVEHVGGDMFD-GVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV 310 (354)
Q Consensus 232 ~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~ 310 (354)
++++++.+|+++ +++++|+|++.+++|+|+++.+.++|++++++||| ||+++|+|...++... . . ....+ .
T Consensus 240 ~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~-~--~--~~~~~--~ 311 (359)
T 1x19_A 240 DRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS-GGRLLILDMVIDDPEN-P--N--FDYLS--H 311 (359)
T ss_dssp TTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT-TCEEEEEEECCCCTTS-C--C--HHHHH--H
T ss_pred CCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC-CCEEEEEecccCCCCC-c--h--HHHHH--H
Confidence 579999999998 67778999999999999999899999999999999 9999999988776522 1 1 12222 3
Q ss_pred hhcccCCccc----CCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 311 MMAHTNKGKE----RSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 311 ~~~~~~~g~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
++....+++. ++.++|.++|+++||+.+++++.+ ..++|+++|
T Consensus 312 ~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 312 YILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 3333245666 999999999999999999999988 888999986
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-45 Score=335.80 Aligned_cols=317 Identities=20% Similarity=0.258 Sum_probs=273.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 18 KVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 18 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+.++++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|++++.++|||++|++.|+|++.+ +.|++|
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~-----~~y~~t 79 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQA-----EGYRLT 79 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecC-----CEEecC
Confidence 4679999999999999999999999999986 799999999999999999999999999999998754 899999
Q ss_pred ccc-chhhcCCCcchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhH
Q 018565 98 PLS-RRLMRHGENNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAM 176 (354)
Q Consensus 98 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 176 (354)
+.+ +++.++++.+++.++.+..++..+..|.+|.++++++.+ ++. . |+++.++++....|...|........
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (335)
T 2r3s_A 80 SDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGT-AIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPA 152 (335)
T ss_dssp HHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSC-CST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHH
T ss_pred HHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCC-CCC-----C-cccccCCHHHHHHHHHHHHHHHhhhH
Confidence 999 688888877888888777554678899999999999863 443 3 78888888899999999988877767
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCCc-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVPE- 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~~- 247 (354)
..+++.+++.+.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++++++.+|+++ ++++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 232 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND 232 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCC
Confidence 778887771117789999999999999999999999999999999888877764 3579999999998 6664
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++... .+ .....+++.++..+.+++.++.++|.
T Consensus 233 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~i~e~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~t~~~~~ 307 (335)
T 2r3s_A 233 YDLVLLPNFLHHFDVATCEQLLRKIKTALAV-EGKVIVFDFIPNSDRI-TP---PDAAAFSLVMLATTPNGDAYTFAEYE 307 (335)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEECCCCTTSS-CS---HHHHHHHHHHHHHSSSCCCCCHHHHH
T ss_pred CcEEEEcchhccCCHHHHHHHHHHHHHhCCC-CcEEEEEeecCCCCcC-Cc---hHHHHHHHHHHeeCCCCCcCCHHHHH
Confidence 9999999999999999999999999999999 9999999998776433 21 23456777777664478999999999
Q ss_pred HHHHHcCCceeEEEEcCCceeEEEEe
Q 018565 328 YVLRQAGFSRYNITSIHAVQSLIEAF 353 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~~~~~~~i~~~ 353 (354)
++++++||+.+++.+.++..++|+++
T Consensus 308 ~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 308 SMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHHCCCCeeeEEECCCCceeEEEe
Confidence 99999999999999998888877765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=172.37 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=123.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF--PRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~ 255 (354)
.+++.+|||||||+|..+..+++++ |+++++++|+ +.+++.|++ ..+|+++.+|+.+ ++++||+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3577899999999999999999875 6789999999 999998874 4689999999998 788899999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh-ccc------------CCcccCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM-AHT------------NKGKERS 322 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~-~~~------------~~g~~~t 322 (354)
++|++++++..++|++++++||| ||.+++.|...+.+.. ..... .....++... ... ..-...|
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp-GG~lii~e~~~~~~~~-~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP-GGALVLSEKFSFEDAK-VGELL-FNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEBCCSSHH-HHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeecCchhHhHHHHHHHHHcCC-CcEEEEEeccCCCCHH-HHHHH-HHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 99999998888999999999999 9999999987765432 10000 0000010000 000 0013468
Q ss_pred HHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 323 LKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
.+++.++|+++||+.++++--..++..+.|+|
T Consensus 225 ~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 225 VETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 89999999999999998875444444455554
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=156.65 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=129.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC-cce
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP-EAD 249 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~-~~D 249 (354)
..+...+. ...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||
T Consensus 33 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD 111 (234)
T 3dtn_A 33 GVSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYD 111 (234)
T ss_dssp HHHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEE
T ss_pred HHHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCce
Confidence 34444444 134678999999999999999999999999999999 888888765 3489999999998 544 599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-----------Hh-hcccCC
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-----------VM-MAHTNK 317 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-----------~~-~~~~~~ 317 (354)
+|++..++|+++++...++|++++++||| ||.+++.+...+.... ..... ...+... .. ......
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKE-SGIFINADLVHGETAF-IENLN-KTIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEECBCSSHH-HHHHH-HHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCC-CcEEEEEEecCCCChh-hhhHH-HHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 99999999999988888899999999999 9999999987654322 10000 0000000 00 000022
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
...++.+++.++|+++||+.++++......+++...|
T Consensus 189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 3556899999999999999999988877777666543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=147.57 Aligned_cols=155 Identities=18% Similarity=0.195 Sum_probs=124.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~- 246 (354)
..++..+. ..+..+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++ ..++++..+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 34444444 5677899999999999999999986 8889999999 888887765 2589999999988 544
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
.||+|++..++|++++. ..+|++++++|+| ||.+++.+........ .. .....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~~-----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP-FAYLAIIDWKKEERDK-GP-----------------PPEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE-EEEEEEEEECSSCCSS-SC-----------------CGGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC-CeEEEEEEeccccccc-CC-----------------chhcccCHHH
Confidence 49999999999998754 5899999999999 9999999876554332 11 1123458999
Q ss_pred HHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 326 WDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
|.++++++||+++++...+.....+.++|
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999999999887777666654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=150.32 Aligned_cols=160 Identities=14% Similarity=0.051 Sum_probs=116.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~ 259 (354)
+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 468999999999999999999876 8999999 888888765 3789999999988 544 4999999999777
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh---cc-----------------cCCcc
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM---AH-----------------TNKGK 319 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~---~~-----------------~~~g~ 319 (354)
+..++..+++++++++|+| ||.+++.+...+.... .. ...........+. .. .....
T Consensus 116 ~~~~~~~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKP-SGKFIMYFTDLRELLP-RL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFN 192 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEE-EEEEEEEEECHHHHGG-GC-CC---------CCEEEEETTTTEEEEEC-----CCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCC-CcEEEEEecChHHHHH-HH-HhhhhcccceeecccccCccccEEEEEeccchhhheeehh
Confidence 7777788999999999999 9999998765321110 00 0000000000000 00 00011
Q ss_pred cCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 320 ERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 320 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
.++ .+|.++|+++||+.+++.+++...++|+.+|
T Consensus 193 ~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 193 VWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp CCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 122 4899999999999999999988888999876
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-19 Score=150.35 Aligned_cols=168 Identities=19% Similarity=0.202 Sum_probs=119.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~- 246 (354)
..+++.++ ..+. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 34444444 3344 9999999999999999998 8889999999 888887765 3589999999988 654
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhh-ccHHhhcccCCcccCCHH
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLM-LDMVMMAHTNKGKERSLK 324 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~~~t~~ 324 (354)
.||+|++..++|++++. ..+|++++++|+| ||.+++.+...+.... .......... ........ .....++.+
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 184 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS-GGKTYIGGGFGNKELR-DSISAEMIRKNPDWKEFNR-KNISQENVE 184 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE-EEEEEEEECCSSHHHH-HHHHHHHHHHCTTHHHHHH-HHSSHHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC-CCEEEEEeccCcHHHH-HHHHHHHHHhHHHHHhhhh-hccccCCHH
Confidence 49999999999998654 5899999999999 9999998754332111 0000000000 00000000 112345789
Q ss_pred HHHHHHHHcCCceeEEEEcCCceeEEEEe
Q 018565 325 EWDYVLRQAGFSRYNITSIHAVQSLIEAF 353 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 353 (354)
+|.++|+++||+.+++.......+++...
T Consensus 185 ~~~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 185 RFQNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHHHcCCCeEEEEecCCceEEEEec
Confidence 99999999999999999887776665543
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=147.44 Aligned_cols=158 Identities=15% Similarity=0.215 Sum_probs=117.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-CCC-cceEEEeccccccCC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDWG 261 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~~ 261 (354)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|++..++|+++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCC
Confidence 346789999999999999999987 679999999 888888876 2489999999998 554 599999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhc---cHH--hhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLML---DMV--MMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~---~l~--~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
++....+|++++++||| ||.+++.+...+.... ........ ... .... .....++.++|.++|+++||+
T Consensus 121 ~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~ 194 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNK-GGKIVFADTIFADQDA----YDKTVEAAKQRGFHQLANDL-QTEYYTRIPVMQTIFENNGFH 194 (220)
T ss_dssp HHHHHHHHHHHHHHSCT-TCEEEEEEECBSSHHH----HHHHHHHHHHTTCHHHHHHH-HHSCCCBHHHHHHHHHHTTEE
T ss_pred hHHHHHHHHHHHHhcCC-CCEEEEEeccccChHH----HHHHHHHHHhCCCccchhhc-chhhcCCHHHHHHHHHHCCCE
Confidence 98877899999999999 9999999866543221 00000000 000 0000 011334889999999999998
Q ss_pred eeEEEEcCCceeEEEEe
Q 018565 337 RYNITSIHAVQSLIEAF 353 (354)
Q Consensus 337 ~~~~~~~~~~~~~i~~~ 353 (354)
++.+.. ....+++.+.
T Consensus 195 v~~~~~-~~~~w~~~~~ 210 (220)
T 3hnr_A 195 VTFTRL-NHFVWVMEAT 210 (220)
T ss_dssp EEEEEC-SSSEEEEEEE
T ss_pred EEEeec-cceEEEEeeh
Confidence 776544 4666666654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-18 Score=148.70 Aligned_cols=155 Identities=13% Similarity=0.234 Sum_probs=123.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~ 248 (354)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 45566665 6678899999999999999999987 679999999 888888775 2689999999988 554 49
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|++..++|++++++...+|++++++||| ||.+++.+...+.... . . ...... ... .+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~---~--~~~~~~--~~~-~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP-TGTLLITDYCATEKEN-W---D--DEFKEY--VKQ-RKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEESCGGG-C---C--HHHHHH--HHH-HTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC-CCEEEEEEeccCCccc-c---h--HHHHHH--Hhc-CCCCCCCHHHHHH
Confidence 999999999999888889999999999999 9999999987665222 1 0 011111 111 2335678999999
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
+++++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999999887653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=141.83 Aligned_cols=151 Identities=19% Similarity=0.093 Sum_probs=110.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCCCC--CcceEEEeccccccCC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFDGV--PEADAAIIKWVLHDWG 261 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~~--~~~D~i~~~~~lh~~~ 261 (354)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|++..++|+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 345679999999999999999998 669999999 888888876 378999999998843 3599999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCC-------cccCCHHHHHHHHHHcC
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNK-------GKERSLKEWDYVLRQAG 334 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------g~~~t~~e~~~ll~~aG 334 (354)
++....+|++++++|+| ||.+++.+...+.... ...+. ........... .. ....+.++|.++++++|
T Consensus 122 ~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aG 196 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAP-GGVVEFVDVTDHERRL-EQQDD--SEPEVAVRRTL-QDGRSFRIVKVFRSPAELTERLTALG 196 (218)
T ss_dssp HHHHHHHHHHHHHHEEE-EEEEEEEEECCCC---------------CEEEEEC-TTSCEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEEEeCCCCcccc-chhhh--cccccceeeec-CCcchhhHhhcCCCHHHHHHHHHHCC
Confidence 98888999999999999 9999999876643221 10000 00000000000 11 12458999999999999
Q ss_pred CceeEEEEcC
Q 018565 335 FSRYNITSIH 344 (354)
Q Consensus 335 f~~~~~~~~~ 344 (354)
|++......+
T Consensus 197 f~v~~~~~~~ 206 (218)
T 3ou2_A 197 WSCSVDEVHP 206 (218)
T ss_dssp EEEEEEEEET
T ss_pred CEEEeeeccc
Confidence 9955444434
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=146.79 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=121.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~- 246 (354)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 45556666 6678899999999999999999987 689999999 888877764 3579999999988 654
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
.||+|++..++|++++. ..+|++++++||| ||++++.+........ .. .....+...... ..+..++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~-~~----~~~~~~~~~~~~-~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP-GGTVAIADFVLLAPVE-GA----KKEAVDAFRAGG-GVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE-EEEEEEEEEEESSCCC-HH----HHHHHHHHHHHH-TCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC-CeEEEEEEeeccCCCC-hh----HHHHHHHHHhhc-CccCCCCHHH
Confidence 49999999999998765 5899999999999 9999999987654332 10 111111111111 3556789999
Q ss_pred HHHHHHHcCCceeEEEEcC
Q 018565 326 WDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~~ 344 (354)
|.++++++||+++++...+
T Consensus 199 ~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHcCCeEEEEEECc
Confidence 9999999999999887753
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=149.65 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=118.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC-cceEEEecc-ccccCCh
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP-EADAAIIKW-VLHDWGD 262 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~-~~D~i~~~~-~lh~~~~ 262 (354)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 356899999999999999999874 48999999 889988876 5689999999998 544 499999997 9999865
Q ss_pred -HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchh--------------------hhhhhccHHhhcccCC----
Q 018565 263 -DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFK--------------------SVRLMLDMVMMAHTNK---- 317 (354)
Q Consensus 263 -~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~~---- 317 (354)
++..++|++++++||| ||.+++.+...+.... ..... .....+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
T 3pfg_A 127 QAELDAALERFAAHVLP-DGVVVVEPWWFPENFT-PGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGIT 204 (263)
T ss_dssp HHHHHHHHHHHHHTEEE-EEEEEECCCCCTTTCC-TTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEEeccChhhcc-ccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEE
Confidence 5678999999999999 9999986544333211 10000 0000111111111011
Q ss_pred -------cccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 318 -------GKERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 318 -------g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
.+.+|.++|.++|+++||+++++...+....++.++|
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2456899999999999999999877776666666654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=147.88 Aligned_cols=154 Identities=16% Similarity=0.311 Sum_probs=116.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~- 246 (354)
...+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 344555555 56778999999999999999999865 8999999 888888764 2679999999988 665
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-HhhcccCCcccCCHH
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-VMMAHTNKGKERSLK 324 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~g~~~t~~ 324 (354)
.||+|++..++|++++. ..+|++++++||| ||++++.+...+.... ...+... ...........++.+
T Consensus 102 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp-gG~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK-GGQLLLVDNSAPENDA-------FDVFYNYVEKERDYSHHRAWKKS 171 (260)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE-EEEEEEEEEEBCSSHH-------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred CCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC-CCEEEEEEcCCCCCHH-------HHHHHHHHHHhcCccccCCCCHH
Confidence 49999999999999875 4899999999999 9999999877654321 1111111 111111234567899
Q ss_pred HHHHHHHHcCCceeEEEEc
Q 018565 325 EWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~~ 343 (354)
+|.++|+++||+++++...
T Consensus 172 ~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEe
Confidence 9999999999998887654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=147.43 Aligned_cols=149 Identities=19% Similarity=0.274 Sum_probs=118.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~ 248 (354)
..++..++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 45555555 5677899999999999999999876 457999999 888888775 2679999999987 544 49
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|++.+++|++++++..++|++++++||| ||.+++.+........ ..+. . .....++.++|.+
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~----------~~~~----~-~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP-NGYIFFKENCSTGDRF----------LVDK----E-DSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEBC--CCE----------EEET----T-TTEEEBCHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC-CeEEEEEecCCCcccc----------eecc----c-CCcccCCHHHHHH
Confidence 999999999999988889999999999999 9999998865433221 0110 0 2234678999999
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
+|+++||+++++....
T Consensus 224 ~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHTCCEEEEEECT
T ss_pred HHHHCCCEEEEeeecC
Confidence 9999999999987654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=146.72 Aligned_cols=162 Identities=10% Similarity=0.111 Sum_probs=121.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 248 (354)
..+++.++ ..++.+|||||||+|.++..++++++ .+++++|+ +++++.+++ .+++++..+|+.+-.+.|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 45555565 66788999999999999999997764 49999999 888887764 358999999997622569
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCC---Ccchh-hhhhhcc-HHhhcccCCcccCCH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGV---DNKFK-SVRLMLD-MVMMAHTNKGKERSL 323 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~---~~~~~-~~~~~~~-l~~~~~~~~g~~~t~ 323 (354)
|+|++..++|++++++...+|++++++||| ||.+++.+...+..... ..+.. ......+ +..... .++..++.
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~ 208 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA-DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF-PGGRLPSI 208 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT-TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS-TTCCCCCH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC-CCEEEEEEecCCCccccccccccccccccchhhhHHheeC-CCCCCCCH
Confidence 999999999999877778999999999999 99999998776532100 00000 0001111 111122 55677899
Q ss_pred HHHHHHHHHcCCceeEEEEc
Q 018565 324 KEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~~~ 343 (354)
+++.++++++||+++++...
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHhCCcEEEEEEeC
Confidence 99999999999999998765
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-17 Score=146.70 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=114.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~ 255 (354)
+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 5677899999999999999999986 469999999 888887764 3689999999988 654 499999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
++|++++ ...+|++++++||| ||++++.+...+.... .. ....+.... ......+.++|.++++++||
T Consensus 159 ~l~~~~~--~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~------~~~~~~~~~--~~~~~~~~~~~~~~l~~aGf 226 (297)
T 2o57_A 159 AFLHSPD--KLKVFQECARVLKP-RGVMAITDPMKEDGID-KS------SIQPILDRI--KLHDMGSLGLYRSLAKECGL 226 (297)
T ss_dssp CGGGCSC--HHHHHHHHHHHEEE-EEEEEEEEEEECTTCC-GG------GGHHHHHHH--TCSSCCCHHHHHHHHHHTTE
T ss_pred hhhhcCC--HHHHHHHHHHHcCC-CeEEEEEEeccCCCCc-hH------HHHHHHHHh--cCCCCCCHHHHHHHHHHCCC
Confidence 9999987 46899999999999 9999999987665433 11 111111111 12235689999999999999
Q ss_pred ceeEEEEcC
Q 018565 336 SRYNITSIH 344 (354)
Q Consensus 336 ~~~~~~~~~ 344 (354)
+++++..+.
T Consensus 227 ~~~~~~~~~ 235 (297)
T 2o57_A 227 VTLRTFSRP 235 (297)
T ss_dssp EEEEEEECH
T ss_pred eEEEEEECc
Confidence 999987753
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=143.83 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=117.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~- 246 (354)
..++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 44555555 6678899999999999999999987 678999999 888888764 2589999999988 443
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
.||+|++..++|++++. .++|++++++||| ||++++.+........ .. ... ... ... .....++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp-gG~l~~~~~~~~~~~~-~~---~~~---~~~-~~~-~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP-GGIMLIGEPYWRQLPA-TE---EIA---QAC-GVS-STSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE-EEEEEEEEEEETTCCS-SH---HHH---HTT-TCS-CGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC-CeEEEEecCcccCCCC-hH---HHH---HHH-hcc-cccccCCHHHH
Confidence 49999999999998754 5889999999999 9999999987654432 11 000 000 001 22356789999
Q ss_pred HHHHHHcCCceeEEEEc
Q 018565 327 DYVLRQAGFSRYNITSI 343 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~ 343 (354)
.++++++||+.+++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=144.98 Aligned_cols=163 Identities=11% Similarity=0.063 Sum_probs=122.4
Q ss_pred hhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeec
Q 018565 168 MACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGG 239 (354)
Q Consensus 168 m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~ 239 (354)
+..........+++.++ ...+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+
T Consensus 97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 33333334455666655 24577899999999999999999985 578999999 888887764 358999999
Q ss_pred CCCC-CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccC
Q 018565 240 DMFD-GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTN 316 (354)
Q Consensus 240 d~~~-~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (354)
|+.+ +++ .||+|++..++|+++ ..++|++++++||| ||++++.+........ .. ... ...+....
T Consensus 175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~--~~~--~~~~~~~~--- 242 (312)
T 3vc1_A 175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV-GGRYVTITGCWNPRYG-QP--SKW--VSQINAHF--- 242 (312)
T ss_dssp CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE-EEEEEEEEEEECTTTC-SC--CHH--HHHHHHHH---
T ss_pred ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC-CcEEEEEEcccccccc-ch--hHH--HHHHHhhh---
Confidence 9998 654 499999999999985 66899999999999 9999999987765432 10 001 11111111
Q ss_pred CcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 317 KGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 317 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
....++.++|.++++++||+++++..++
T Consensus 243 ~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 243 ECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp TCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred cCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 1136789999999999999999987753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-17 Score=145.83 Aligned_cols=160 Identities=15% Similarity=0.201 Sum_probs=123.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 248 (354)
..+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .+++++..+|+.+-...|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 45566666 67788999999999999999999876 79999999 888888764 348999999997653459
Q ss_pred eEEEeccccccCCh-------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhh--------hccH-Hhh
Q 018565 249 DAAIIKWVLHDWGD-------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRL--------MLDM-VMM 312 (354)
Q Consensus 249 D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~--------~~~l-~~~ 312 (354)
|+|++..++|++++ +....++++++++||| ||++++.+...+.... . ..... +.+. ...
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~ 213 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD-DGRMLLHTITIPDKEE-A---QELGLTSPMSLLRFIKFILTE 213 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT-TCEEEEEEEECCCHHH-H---HHHTCCCCHHHHHHHHHHHHH
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC-CcEEEEEEEeccCccc-h---hhccccccccccchHHHHHHh
Confidence 99999999999944 5678999999999999 9999998887654321 0 00000 0011 112
Q ss_pred cccCCcccCCHHHHHHHHHHcCCceeEEEEcCC
Q 018565 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSIHA 345 (354)
Q Consensus 313 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 345 (354)
.. .++..++.+++.++++++||+++++...+.
T Consensus 214 ~~-p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 214 IF-PGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp TC-TTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred cC-CCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 23 566788999999999999999999877643
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=140.90 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=117.2
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-- 246 (354)
.++..+. ...+..+|||||||+|..+..+++.++. +++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 36 ~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 3444443 1556789999999999999999999886 9999999 888887764 3569999999987 554
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
.||+|++..++|+++ ..++|++++++||| ||++++.+........ .. ......... ....++.++|
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~~------~~~~~~~~~---~~~~~~~~~~ 179 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKK-GGFIAVSEASWFTSER-PA------EIEDFWMDA---YPEISVIPTC 179 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEE-EEEEEEEEEEESSSCC-CH------HHHHHHHHH---CTTCCBHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCC-CcEEEEEEeeccCCCC-hH------HHHHHHHHh---CCCCCCHHHH
Confidence 499999999999984 35899999999999 9999999976554333 21 111111111 1236689999
Q ss_pred HHHHHHcCCceeEEEEcCC
Q 018565 327 DYVLRQAGFSRYNITSIHA 345 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~~ 345 (354)
.++++++||+++++...+.
T Consensus 180 ~~~l~~aGf~~v~~~~~~~ 198 (257)
T 3f4k_A 180 IDKMERAGYTPTAHFILPE 198 (257)
T ss_dssp HHHHHHTTEEEEEEEECCG
T ss_pred HHHHHHCCCeEEEEEECCh
Confidence 9999999999999887764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=146.82 Aligned_cols=214 Identities=11% Similarity=-0.013 Sum_probs=142.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhcCCCcchHHHHH-Hh
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMRHGENNMAAFIL-LE 118 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~-~~ 118 (354)
+||..| . +|.|++|||+.+|+++..+++||+.|.+.|+++..+ + |++|+.++ ++...++.+..+... ..
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~~~-----~-~~lt~~~~~~l~~~~~~~~~~~~~~~~ 117 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEEPLPLVVAILESLNELGYVTFED-----G-VKLTEKGEELVAEYGIGKRYDFTCPHC 117 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECSS-----S-SEECHHHHHHHHHHTCCCCCC------
T ss_pred HHHHHh-c--CCCCHHHHHHHhCCChHHHHHHHHHHhhCCcEEECC-----C-EEECHHHHHHHHhcCccccccccchhh
Confidence 789988 5 699999999999999999999999999999998754 5 99998765 555432211111110 00
Q ss_pred cC-----chhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceE
Q 018565 119 SS-----PVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETL 193 (354)
Q Consensus 119 ~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~v 193 (354)
.+ ..+...|..+.+.++.... + ...+.+.+ ..+... ....+ .... .. ..++.+|
T Consensus 118 ~g~g~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~-----~~~~~~--~~~~l---------~~~~-~~--~~~~~~V 176 (373)
T 2qm3_A 118 QGKTVDLQAFADLLEQFREIVKDRPE-P-LHEFDQAY-----VTPETT--VARVI---------LMHT-RG--DLENKDI 176 (373)
T ss_dssp ------CGGGHHHHHHHHHHHTTCCC-C-CGGGTCCC-----BCHHHH--HHHHH---------HHHH-TT--CSTTCEE
T ss_pred cCCCcchhhhHHHHHHHHHHHhcCCc-c-chhcCCee-----cCHHHH--HHHHH---------HHhh-cC--CCCCCEE
Confidence 00 1112235556666664421 1 11111100 011110 00000 0011 11 2246899
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC-----cceEEEeccccccCC
Q 018565 194 VDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-----EADAAIIKWVLHDWG 261 (354)
Q Consensus 194 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-----~~D~i~~~~~lh~~~ 261 (354)
||+| |+|.++..+++..|+.+++++|+ +.+++.+++ ..+++++.+|+.++.| .||+|++..+++..
T Consensus 177 LDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~- 254 (373)
T 2qm3_A 177 FVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE- 254 (373)
T ss_dssp EEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-
T ss_pred EEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH-
Confidence 9999 99999999999988889999999 899988875 2389999999988432 49999998876643
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
....+++++.++||| ||++++++..
T Consensus 255 --~~~~~l~~~~~~Lkp-gG~~~~~~~~ 279 (373)
T 2qm3_A 255 --AIRAFVGRGIATLKG-PRCAGYFGIT 279 (373)
T ss_dssp --HHHHHHHHHHHTBCS-TTCEEEEEEC
T ss_pred --HHHHHHHHHHHHccc-CCeEEEEEEe
Confidence 257899999999999 9987666654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=147.82 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=119.5
Q ss_pred cCCCceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLT-KAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~ 255 (354)
+.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999986 6789999999999 888888765 3459999999988 544 599999999
Q ss_pred ccccCChH-HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-chh--hhh---hh-cc--HHhhcccCCcccCCHHH
Q 018565 256 VLHDWGDD-ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KFK--SVR---LM-LD--MVMMAHTNKGKERSLKE 325 (354)
Q Consensus 256 ~lh~~~~~-~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~~--~~~---~~-~~--l~~~~~~~~g~~~t~~e 325 (354)
++|++++. ...+++++++++||| ||.+++.+...+.... .. .+. ... .. .. +...........++.++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP-GGALVTSFLTPPPALS-PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEECCCCCTTTC-TTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC-CeEEEEEecCCCCccc-ccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 99998655 445799999999999 9999998866544322 10 000 000 00 00 00010101114479999
Q ss_pred HHHHHHHcCCceeEEEEcCC-ceeEEEEeC
Q 018565 326 WDYVLRQAGFSRYNITSIHA-VQSLIEAFP 354 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 354 (354)
+.++|+++||+++++..... ....+.++|
T Consensus 274 ~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999999987643 444555554
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=142.83 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=117.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC-cceEEEe-ccccccCCh
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP-EADAAII-KWVLHDWGD 262 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~-~~D~i~~-~~~lh~~~~ 262 (354)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3568999999999999999999876 8999999 889888876 5679999999988 544 4999995 558988854
Q ss_pred -HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhh--------------------hhhhccHHhhcccCCc---
Q 018565 263 -DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKS--------------------VRLMLDMVMMAHTNKG--- 318 (354)
Q Consensus 263 -~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~g--- 318 (354)
++..++|++++++|+| ||.+++.+...++... ...... ......+.+.....++
T Consensus 117 ~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP-GGVVVVEPWWFPETFA-DGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVR 194 (239)
T ss_dssp HHHHHHHHHHHHHTEEE-EEEEEECCCCCTTTCC-TTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHhcCC-CeEEEEEeccCccccc-ccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcce
Confidence 6778999999999999 9999987665544321 100000 0000111111110111
Q ss_pred --------ccCCHHHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 319 --------KERSLKEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 319 --------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+.+|.++|.++|+++||++..+........++.++|
T Consensus 195 ~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 195 HFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 456999999999999998777766566677777765
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=138.97 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=113.5
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEeccccccCChHH
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~ 264 (354)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999987 568999999 888888876 6789999999988 543 499999999999998777
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 265 CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
...+|++++++||| ||.+++.+...+.... + .. .. .....++.++|.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~----~---~~-------~~-~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED-GGGLLMSFFSGPSLEP----M---YH-------PV-ATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE-EEEEEEEEECCSSCEE----E---CC-------SS-SCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC-CcEEEEEEccCCchhh----h---hc-------hh-hhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 88999999999999 9999998765433111 0 00 01 23356789999999999999999998875
Q ss_pred C
Q 018565 345 A 345 (354)
Q Consensus 345 ~ 345 (354)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=139.94 Aligned_cols=141 Identities=17% Similarity=0.318 Sum_probs=110.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC---CCC--cceEEEeccccccC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD---GVP--EADAAIIKWVLHDW 260 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~--~~D~i~~~~~lh~~ 260 (354)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999987 568999999 8888888744 8999998876 444 49999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
++++...+|++++++||| ||.+++...... . . ...... .........++.+++.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~---~----~---~~~~~~--~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY-SSYIVIESPNPT---S----L---YSLINF--YIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT-TCCEEEEEECTT---S----H---HHHHHH--TTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC-CcEEEEEeCCcc---h----h---HHHHHH--hcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988888999999999999 999998765321 1 0 001111 11113345678999999999999999988
Q ss_pred EEcC
Q 018565 341 TSIH 344 (354)
Q Consensus 341 ~~~~ 344 (354)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=141.28 Aligned_cols=152 Identities=18% Similarity=0.305 Sum_probs=115.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--c
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--E 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~ 247 (354)
.+++.+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..++++..+|+.+ +++ .
T Consensus 12 ~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 12 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred hHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 3344444 66789999999999999999998864 8999999 888887764 2689999999987 554 4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccH-HhhcccCCcccCCHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDM-VMMAHTNKGKERSLKEW 326 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~g~~~t~~e~ 326 (354)
||+|++..++|++++. ..+|++++++||| ||.+++.+...+.... ...+... ...........++.++|
T Consensus 88 fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV--RKAVREVARVLKQ-DGRFLLVDHYAPEDPV-------LDEFVNHLNRLRDPSHVRESSLSEW 157 (239)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE-EEEEEEEEECBCSSHH-------HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred EEEEEECCchhhccCH--HHHHHHHHHHcCC-CcEEEEEEcCCCCChh-------HHHHHHHHHHhccccccCCCCHHHH
Confidence 9999999999999864 5899999999999 9999999877654321 1111111 11111123456789999
Q ss_pred HHHHHHcCCceeEEEEc
Q 018565 327 DYVLRQAGFSRYNITSI 343 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~ 343 (354)
.++|+++||+.+++...
T Consensus 158 ~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 158 QAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHCCCcEEEEEee
Confidence 99999999998887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-17 Score=140.33 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=109.2
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEecccccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD 259 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~ 259 (354)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5778999999 888887765 2469999999998 333 4999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
++++...+++++++++||| ||.+++.+........ . ....++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP-DGELITLMYPITDHVG-G-------------------PPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE-EEEEEEEECCCSCCCS-C-------------------SSCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC-CcEEEEEEecccccCC-C-------------------CCccCCHHHHHHHHHHcCCeEEE
Confidence 9988888999999999999 9999997765443222 1 11225799999999999999999
Q ss_pred EEEcCC
Q 018565 340 ITSIHA 345 (354)
Q Consensus 340 ~~~~~~ 345 (354)
+...+.
T Consensus 204 ~~~~~~ 209 (235)
T 3lcc_A 204 VEENPH 209 (235)
T ss_dssp EEECTT
T ss_pred EEecCC
Confidence 887643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=142.13 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=110.5
Q ss_pred CCceEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCC--------------CC
Q 018565 189 GIETLVDIGGND---GTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDG--------------VP 246 (354)
Q Consensus 189 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~--------------~~ 246 (354)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ +.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 998888888899999999999 999998875 47899999999762 23
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
.||+|++..++|++++++...+|++++++||| ||+|++.+...+. . .. . ....+...... .....++.+++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p-GG~l~i~~~~~~~--~-~~-~---~~~~~~~~~~~-~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP-GSYLFMTSLVDTG--L-PA-Q---QKLARITRENL-GEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT-TCEEEEEEEBCSS--C-HH-H---HHHHHHHHHHH-SCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC-CcEEEEEEecCcc--h-HH-H---HHHHHHHHhcC-CCCccCCHHHH
Confidence 58999999999999987888999999999999 9999999876532 2 10 1 11122221111 24567899999
Q ss_pred HHHHHHcCCceeE
Q 018565 327 DYVLRQAGFSRYN 339 (354)
Q Consensus 327 ~~ll~~aGf~~~~ 339 (354)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 5998776
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-17 Score=144.30 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=115.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++..+|+.+ +++ .||+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999999 888887764 3579999999988 544 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc-HHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD-MVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
+|++++.. .+|++++++||| ||.+++.+........ .+........+. +.......++..++..++.++|+++||
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 190 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP-GGTITVIEGDHGSCYF-HPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGF 190 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE-EEEEEEEEECGGGCEE-ESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTC
T ss_pred hhhcCCHH--HHHHHHHHHcCC-CcEEEEEEcCCCCceE-CCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCC
Confidence 99998764 899999999999 9999998864422111 000000111111 111111144566778899999999999
Q ss_pred ceeEEEEc
Q 018565 336 SRYNITSI 343 (354)
Q Consensus 336 ~~~~~~~~ 343 (354)
+++++.+.
T Consensus 191 ~~v~~~~~ 198 (276)
T 3mgg_A 191 EKIRVEPR 198 (276)
T ss_dssp EEEEEEEE
T ss_pred CeEEEeeE
Confidence 99988754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=145.08 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=122.0
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 248 (354)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .+++++..+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 45566666 6678899999999999999999886 569999999 888887764 257999999987732569
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc----chh-hhhhhccH-HhhcccCCcccCC
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN----KFK-SVRLMLDM-VMMAHTNKGKERS 322 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~----~~~-~~~~~~~l-~~~~~~~~g~~~t 322 (354)
|+|++..++|++++++...+|++++++||| ||++++.+...+.... .. +.. ......+. ..... .++..++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA-DGRMTVQSSVSYHPYE-MAARGKKLSFETARFIKFIVTEIF-PGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT-TCEEEEEEEECCCHHH-HHTTCHHHHHHHHHHHHHHHHHTS-TTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC-CcEEEEEEeccCCchh-hhhccccccccccchhhHHHHhcC-CCCcCCC
Confidence 999999999999877788999999999999 9999998887654211 00 000 00000111 11122 4567789
Q ss_pred HHHHHHHHHHcCCceeEEEEc
Q 018565 323 LKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.+++.++++++||+++++..+
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999987765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=141.38 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=117.6
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--c
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP--E 247 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~ 247 (354)
++..+. .+.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .
T Consensus 37 ~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 37 ALSFID-NLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 344443 2567789999999999999999998 7889999999 888887765 3679999999988 544 4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++..++|+++ ...++++++++||| ||.+++.+........ .. ........ .....++.+++.
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~------~~~~~~~~---~~~~~~~~~~~~ 180 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKK-GGYLAVSECSWFTDER-PA------EINDFWMD---AYPEIDTIPNQV 180 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEE-EEEEEEEEEEESSSCC-CH------HHHHHHHH---HCTTCEEHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCC-CCEEEEEEeeecCCCC-hH------HHHHHHHH---hCCCCCCHHHHH
Confidence 99999999999983 35889999999999 9999999987654433 21 11111111 122456899999
Q ss_pred HHHHHcCCceeEEEEcCC
Q 018565 328 YVLRQAGFSRYNITSIHA 345 (354)
Q Consensus 328 ~ll~~aGf~~~~~~~~~~ 345 (354)
++++++||+++++..++.
T Consensus 181 ~~l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 181 AKIHKAGYLPVATFILPE 198 (267)
T ss_dssp HHHHHTTEEEEEEEECCG
T ss_pred HHHHHCCCEEEEEEECCH
Confidence 999999999999988763
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.7e-17 Score=137.80 Aligned_cols=134 Identities=8% Similarity=-0.013 Sum_probs=106.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCC-CC-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFD-GV- 245 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~- 245 (354)
..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999997 569999999 889888764 2579999999998 54
Q ss_pred --CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCH
Q 018565 246 --PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSL 323 (354)
Q Consensus 246 --~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~ 323 (354)
..||+|++..++|+++++...+++++++++||| ||+++++....+.... . ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp-gG~~~l~~~~~~~~~~-~------------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ-ACSGLLITLEYDQALL-E------------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS-EEEEEEEEESSCSSSS-S------------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC-CcEEEEEEEecCcccc-C------------------CCCCCCCH
Confidence 359999999999999988888899999999999 9996665443321111 0 11122578
Q ss_pred HHHHHHHHHcCCceeEEEEc
Q 018565 324 KEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~~~ 343 (354)
+++.+++++ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998877665
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=147.88 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=114.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhcccC--------------CCeEEeecCCCC-------C
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEKC--------------HGVEHVGGDMFD-------G 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~d~~~-------~ 244 (354)
.++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999999986 7889999999 8888887652 689999999987 4
Q ss_pred CC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 245 VP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 245 ~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
++ .||+|++..++|++++. ..+|++++++||| ||++++.+........ . ........+.. ..+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~-~------~~~~~~~~~~~-~~~~~~~ 230 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD-GGELYFSDVYADRRLS-E------AAQQDPILYGE-CLGGALY 230 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE-EEEEEEEEEEESSCCC-H------HHHHCHHHHHT-TCTTCCB
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC-CCEEEEEEeccccccC-H------hHhhhHHHhhc-ccccCCC
Confidence 44 49999999999998764 5899999999999 9999999887654333 1 11112222222 3446678
Q ss_pred HHHHHHHHHHcCCceeEEEE
Q 018565 323 LKEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~ 342 (354)
.++|.++|+++||+.+++..
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe
Confidence 99999999999999887654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=134.33 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=113.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCCcceEEEeccccccCChH
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVPEADAAIIKWVLHDWGDD 263 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~~~ 263 (354)
..+..+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+++++..+| .. +...||+|++..++|++++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~ 91 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFANSFHDMDDK 91 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEESCSTTCSCH
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEccchhcccCH
Confidence 45678999999999999999999863 8999999 888888876 6789999999 32 33359999999999998754
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
..++++++++||| ||++++.+........ .+ .....++.++|.++++ ||+++++...
T Consensus 92 --~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 92 --QHVISEVKRILKD-DGRVIIIDWRKENTGI-GP-----------------PLSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp --HHHHHHHHHHEEE-EEEEEEEEECSSCCSS-SS-----------------CGGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred --HHHHHHHHHhcCC-CCEEEEEEcCcccccc-Cc-----------------hHhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 5899999999999 9999999876554332 11 1113468999999999 9999999998
Q ss_pred CCceeEEEEe
Q 018565 344 HAVQSLIEAF 353 (354)
Q Consensus 344 ~~~~~~i~~~ 353 (354)
+.....+.+.
T Consensus 149 ~~~~~~l~~~ 158 (170)
T 3i9f_A 149 TPYHFGLVLK 158 (170)
T ss_dssp STTEEEEEEE
T ss_pred CCceEEEEEe
Confidence 7766555543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=139.52 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=112.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCC--cce
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVP--EAD 249 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~--~~D 249 (354)
..+.+.++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..++++..+|+.+ +++ .||
T Consensus 34 ~~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 110 (253)
T 3g5l_A 34 HELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN 110 (253)
T ss_dssp HHHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence 34455555 456789999999999999999998654 8999999 888888775 4789999999987 554 499
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC------------CCCCCCcchhhhhhhccH-----Hhh
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE------------EDDGVDNKFKSVRLMLDM-----VMM 312 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~------------~~~~~~~~~~~~~~~~~l-----~~~ 312 (354)
+|++..++|++++ ..++|++++++||| ||.+++...... .... ...+. ....++- ...
T Consensus 111 ~v~~~~~l~~~~~--~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~ 185 (253)
T 3g5l_A 111 VVLSSLALHYIAS--FDDICKKVYINLKS-SGSFIFSVEHPVFTADGRQDWYTDETGN-KLHWP-VDRYFNESMRTSHFL 185 (253)
T ss_dssp EEEEESCGGGCSC--HHHHHHHHHHHEEE-EEEEEEEEECHHHHSSSSCSCEECSSCC-EEEEE-ECCTTCCCEEEEEET
T ss_pred EEEEchhhhhhhh--HHHHHHHHHHHcCC-CcEEEEEeCCCccccCccccceeccCCc-eEEEE-eccccccceEEEeec
Confidence 9999999999865 46899999999999 999998743211 0000 00000 0000000 000
Q ss_pred cccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 313 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
........+|.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 186 GEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp TEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 0001112349999999999999999998754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=137.00 Aligned_cols=142 Identities=12% Similarity=0.154 Sum_probs=110.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCC--cceEEEeccccccC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDW 260 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~ 260 (354)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 36789999999999999999987 668999999 888888875 4789999999988 554 49999999999998
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
++. ..+|++++++|+| ||.+++.+........ ....... .... .....++.+++.++++++||++++.
T Consensus 130 ~~~--~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~-------~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKS-DGYACIAILGPTAKPR-------ENSYPRL-YGKD-VVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SCH--HHHHHHHHHHEEE-EEEEEEEEECTTCGGG-------GGGGGGG-GTCC-CSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCH--HHHHHHHHHHhCC-CeEEEEEEcCCcchhh-------hhhhhhh-cccc-ccccCCCHHHHHHHHHHcCCEEEEe
Confidence 765 4889999999999 9999998754322111 1111111 1111 2335578999999999999999998
Q ss_pred EEc
Q 018565 341 TSI 343 (354)
Q Consensus 341 ~~~ 343 (354)
..+
T Consensus 198 ~~~ 200 (242)
T 3l8d_A 198 IGV 200 (242)
T ss_dssp EEE
T ss_pred ecc
Confidence 754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=143.51 Aligned_cols=161 Identities=14% Similarity=0.197 Sum_probs=114.2
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----C----CCeEEeecCCCC-CCC-cceEEEe-ccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----C----HGVEHVGGDMFD-GVP-EADAAII-KWV 256 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~----~~v~~~~~d~~~-~~~-~~D~i~~-~~~ 256 (354)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ .||+|++ ..+
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS 160 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHH
T ss_pred CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcc
Confidence 349999999999999999987 578999999 889888875 1 689999999998 554 4998886 577
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCC--CCc--chhh-hhh-------------hccHHhhc-----
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDG--VDN--KFKS-VRL-------------MLDMVMMA----- 313 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~--~~~--~~~~-~~~-------------~~~l~~~~----- 313 (354)
+|++++++..++|++++++||| ||.|++.....+.... ... .+.. ... ...+....
T Consensus 161 ~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (299)
T 3g2m_A 161 INELDEADRRGLYASVREHLEP-GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETT 239 (299)
T ss_dssp HTTSCHHHHHHHHHHHHHHEEE-EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC--
T ss_pred cccCCHHHHHHHHHHHHHHcCC-CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCCC
Confidence 8888887889999999999999 9999987755432100 000 0000 000 00000000
Q ss_pred -----ccCCcccCCHHHHHHHHHHcCCceeEEEEcCC------ceeEEEEe
Q 018565 314 -----HTNKGKERSLKEWDYVLRQAGFSRYNITSIHA------VQSLIEAF 353 (354)
Q Consensus 314 -----~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~~i~~~ 353 (354)
.....+.++.++|.++|+++||+++++.+++. ...++++.
T Consensus 240 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 240 DPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred CcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00112356999999999999999999988853 24566664
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=139.64 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=112.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh 258 (354)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 568999999 888888765 2358999999877 443 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+++++....+|++++++|+| ||.+++.+...+. . . .++. . .....++.++|.++++++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~--~-~--------~~~~----~-~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP-NGIIVIKDNMAQE--G-V--------ILDD----V-DSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEBSS--S-E--------EEET----T-TTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC-CeEEEEEEccCCC--c-c--------eecc----c-CCcccCCHHHHHHHHHHcCCeEE
Confidence 99998888999999999999 9999999877654 1 1 0000 0 22345689999999999999999
Q ss_pred EEEEcCC
Q 018565 339 NITSIHA 345 (354)
Q Consensus 339 ~~~~~~~ 345 (354)
++.....
T Consensus 221 ~~~~~~~ 227 (241)
T 2ex4_A 221 AEERQEN 227 (241)
T ss_dssp EEEECCS
T ss_pred EeeecCC
Confidence 9877643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=137.65 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=107.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCCCCC--cceEEEeccccccCChH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFDGVP--EADAAIIKWVLHDWGDD 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~~~~~ 263 (354)
++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.+++|++++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 467899999999999999998865 7999999 888888875 2289999999987422 49999999999999865
Q ss_pred HHHHHHHHHH-HhcCCCCceEEEEeeeeCCCCCCCcc----hhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 264 ECIKILKNCK-EAITKDKGKVIIVEAIIEEDDGVDNK----FKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 264 ~~~~~L~~~~-~~L~p~gG~lli~e~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
.++|++++ ++||| ||++++.++....... ... .......+.-..... .....++.+++.++|+++||+++
T Consensus 120 --~~~l~~~~~~~Lkp-gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gf~~~ 194 (250)
T 2p7i_A 120 --VALLKRINDDWLAE-GGRLFLVCPNANAVSR-QIAVKMGIISHNSAVTEAEFAH-GHRCTYALDTLERDASRAGLQVT 194 (250)
T ss_dssp --HHHHHHHHHTTEEE-EEEEEEEEECTTCHHH-HHHHHTTSSSSTTCCCHHHHHT-TCCCCCCHHHHHHHHHHTTCEEE
T ss_pred --HHHHHHHHHHhcCC-CCEEEEEcCChHHHHH-HHHHHcCccccchhcccccccc-cccccCCHHHHHHHHHHCCCeEE
Confidence 58999999 99999 9999998753321100 000 000000000000011 33456799999999999999999
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
++...
T Consensus 195 ~~~~~ 199 (250)
T 2p7i_A 195 YRSGI 199 (250)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 88653
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-16 Score=134.43 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=104.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccC-----------CCeEEeecCCCC-CC--CcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKC-----------HGVEHVGGDMFD-GV--PEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~--~~~D~i~ 252 (354)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. .++++..+|+.. +. ..||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4568999999999999999999988899999999 8888887651 289999999966 33 2599999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH----H
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD----Y 328 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~----~ 328 (354)
+..++|++++++..+++++++++||| ||.+++... ...... . . .......... .....++.+++. +
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~~i~~~~-~~~~~~-~---~---~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 177 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRP-QTVIVSTPN-KEYNFH-Y---G---NLFEGNLRHR-DHRFEWTRKEFQTWAVK 177 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCC-SEEEEEEEB-GGGGGC-C---C---CT-----GGG-CCTTSBCHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCC-CEEEEEccc-hhhhhh-h---c---ccCccccccc-CceeeecHHHHHHHHHH
Confidence 99999999988888999999999999 985544332 211111 0 0 0000000111 223446888888 8
Q ss_pred HHHHcCCceeEE
Q 018565 329 VLRQAGFSRYNI 340 (354)
Q Consensus 329 ll~~aGf~~~~~ 340 (354)
+++++||++.-.
T Consensus 178 l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 178 VAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHCCcEEEEE
Confidence 899999976543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=131.84 Aligned_cols=160 Identities=17% Similarity=0.153 Sum_probs=110.9
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCC--cceE
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVP--EADA 250 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~--~~D~ 250 (354)
.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 4445555 45678999999999999999988732 38999999 888888775 3479999999987 543 4999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchh---------hhhhhc-----cHHhhcccC
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFK---------SVRLML-----DMVMMAHTN 316 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~---------~~~~~~-----~l~~~~~~~ 316 (354)
|++..++|++++ ...+|++++++|+| ||.+++..............+. .....+ .........
T Consensus 111 v~~~~~l~~~~~--~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (243)
T 3bkw_A 111 AYSSLALHYVED--VARLFRTVHQALSP-GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGV 187 (243)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEEE-EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSC
T ss_pred EEEeccccccch--HHHHHHHHHHhcCc-CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCce
Confidence 999999999875 45899999999999 9999997643210000000000 000000 000000001
Q ss_pred CcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 317 KGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 317 ~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
....++.++|.++|+++||+++++...
T Consensus 188 ~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 188 VKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 223468999999999999999998764
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=133.90 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=110.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCC-CCC--cceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFD-GVP--EADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-~~~--~~D~i~ 252 (354)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46789999999999999999987 679999999 888887764 1368999999988 543 499999
Q ss_pred eccccccCChH-HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc--------------cCC
Q 018565 253 IKWVLHDWGDD-ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH--------------TNK 317 (354)
Q Consensus 253 ~~~~lh~~~~~-~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~ 317 (354)
+..++|++++. ...++|++++++|+| ||.+++.+........ .........+..... ...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKP-GAYLYLVEFGQNWHLK----LYRKRYLHDFPITKEEGSFLARDPETGETEFI 181 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEE-EEEEEEEEEBCCTTSH----HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCC-CeEEEEEECCcchhHH----HHHHHhhhhccchhhhcceEecccccCCccee
Confidence 99999999754 467899999999999 9999999876533221 100101111111100 001
Q ss_pred cccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 318 GKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 318 g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
...++.++|.++|+++||+++++...
T Consensus 182 ~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 182 AHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 24679999999999999999988653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=134.72 Aligned_cols=138 Identities=16% Similarity=0.058 Sum_probs=109.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC-cceEEEeccccccCChH
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP-EADAAIIKWVLHDWGDD 263 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~~~~ 263 (354)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+ +.. .||+|++..++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 346789999999999999999987 669999999 8888888764478888899887 432 49999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC-CceeEEEE
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG-FSRYNITS 342 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG-f~~~~~~~ 342 (354)
+...+|++++++||| ||.+++.......... . .. . .....++.++|.++++++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~-----------~~---~-~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP-GGLFYASYKSGEGEGR-D-----------KL---A-RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE-EEEEEEEEECCSSCEE-C-----------TT---S-CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC-CcEEEEEEcCCCcccc-c-----------cc---c-hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 889999999999999 9999987543222111 0 00 0 1124568999999999999 99998876
Q ss_pred c
Q 018565 343 I 343 (354)
Q Consensus 343 ~ 343 (354)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=136.58 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=113.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAI 252 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~ 252 (354)
..+.+.++ ..+..+|||||||+|.++..+++ |+.+++++|+ +.+++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34444444 56778999999999999999997 6789999999 8999988876699999999988 654 499999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ 332 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~ 332 (354)
+.+++|++++. .++|++++++|| ||++++.+...+.... . +. ...+... ... .....++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk--gG~~~~~~~~~~~~~~-~--~~--~~~~~~~-~~~-~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR--DGTIVLLTFDIRLAQR-I--WL--YDYFPFL-WED-ALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC--SSCEEEEEECGGGCCC-C--GG--GGTCHHH-HHH-HHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC--CcEEEEEEcCCchhHH-H--HH--HHHHHHH-hhh-hhhhCCCHHHHH-HHHH
Confidence 99999998654 589999999999 7999998875443322 1 10 0111100 000 122345678888 9999
Q ss_pred cCCceeEEEEc
Q 018565 333 AGFSRYNITSI 343 (354)
Q Consensus 333 aGf~~~~~~~~ 343 (354)
+||+.+++.+.
T Consensus 168 aGF~~v~~~~~ 178 (261)
T 3ege_A 168 NTKRRVEAIPF 178 (261)
T ss_dssp HHCSEEEEEEC
T ss_pred cCCCceeEEEe
Confidence 99999988765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-16 Score=138.23 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=111.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~~l 257 (354)
..+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..++++..+|+.+ +.+ +||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 557789999999999999999999984 89999999 888887764 3489999999998 554 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeee-----C---CCCCCCcchhhhhhhccHHh-hcccCCcccCCHHHHHH
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAII-----E---EDDGVDNKFKSVRLMLDMVM-MAHTNKGKERSLKEWDY 328 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~l~~-~~~~~~g~~~t~~e~~~ 328 (354)
|++++. .+++++++++||| ||.+++.++.. . ++.. .++......+..+.. .....+....+..++.+
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK-GGKIICFEPHWISNMASYLLDGEK-QSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPI 175 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE-EEEEEEEECCHHHHHHSEEETTSC-HHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHH
T ss_pred hcCCCH--HHHHHHHHHHcCC-CCEEEEEecchhcccccceecCcc-hhhccchHHHHHHHHHHhhhhcccccHHHHHHH
Confidence 998866 4899999999999 99999988651 1 1111 000000111111111 00112334556778999
Q ss_pred HHHHcCCceeEEEEc
Q 018565 329 VLRQAGFSRYNITSI 343 (354)
Q Consensus 329 ll~~aGf~~~~~~~~ 343 (354)
+|+++||+.+++...
T Consensus 176 ~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 176 YLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHTTCEEEEEEEC
T ss_pred HHHHcCCCeEEEEEc
Confidence 999999999877443
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=138.54 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=112.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC-cceEEE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP-EADAAI 252 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~-~~D~i~ 252 (354)
..+++.+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|+
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 34444444 55678999999999999999998 7889999999 888888875 4789999999988 554 499999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH-hhc-----ccCCcccCCHHHH
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV-MMA-----HTNKGKERSLKEW 326 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~-~~~-----~~~~g~~~t~~e~ 326 (354)
+..++|++++. ..+|++++++||| ||++++....... . .. . ........ ... .......++.++|
T Consensus 123 ~~~~l~~~~d~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~--~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (279)
T 3ccf_A 123 SNAMLHWVKEP--EAAIASIHQALKS-GGRFVAEFGGKGN--I-KY-I--LEALYNALETLGIHNPQALNPWYFPSIGEY 193 (279)
T ss_dssp EESCGGGCSCH--HHHHHHHHHHEEE-EEEEEEEEECTTT--T-HH-H--HHHHHHHHHHHTCCCGGGGCCCCCCCHHHH
T ss_pred EcchhhhCcCH--HHHHHHHHHhcCC-CcEEEEEecCCcc--h-HH-H--HHHHHHHHHhcCCccccCcCceeCCCHHHH
Confidence 99999998765 4899999999999 9999987653221 1 00 0 00111110 000 0011245689999
Q ss_pred HHHHHHcCCceeEEEEc
Q 018565 327 DYVLRQAGFSRYNITSI 343 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~ 343 (354)
.++|+++||+++++...
T Consensus 194 ~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 194 VNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHTEEEEEEEEE
T ss_pred HHHHHHcCCEEEEEEEe
Confidence 99999999999887654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=127.36 Aligned_cols=142 Identities=13% Similarity=0.057 Sum_probs=111.4
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-cc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-EA 248 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~ 248 (354)
.+.+.++ ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .|
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 3444444 445679999999999999999987 679999999 888887764 2479999999988 543 49
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|++..++|++++++..+++++++++|+| ||.+++++...+.... .+ . .....++.+++.+
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~-~~---------------~-~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP-GGYNLIVAAMDTADYP-CT---------------V-GFPFAFKEGELRR 160 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEE-EEEEEEEEEBCCSSSC-CC---------------S-CCSCCBCTTHHHH
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCC-CeEEEEEEeeccCCcC-CC---------------C-CCCCccCHHHHHH
Confidence 999999999999988888999999999999 9999998876544322 10 0 1224567899999
Q ss_pred HHHHcCCceeEEEEc
Q 018565 329 VLRQAGFSRYNITSI 343 (354)
Q Consensus 329 ll~~aGf~~~~~~~~ 343 (354)
++++ |++++....
T Consensus 161 ~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 161 YYEG--WERVKYNED 173 (199)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CeEEEeccc
Confidence 9987 999887543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-16 Score=135.29 Aligned_cols=150 Identities=12% Similarity=0.073 Sum_probs=111.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC-cceEEE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP-EADAAI 252 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~-~~D~i~ 252 (354)
..++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34555555 56778999999999999999999999999999999 889888876 5789999999988 422 499999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHh---hc--c----cCCcccCCH
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM---MA--H----TNKGKERSL 323 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~---~~--~----~~~g~~~t~ 323 (354)
+..++|++++ ...+|++++++|+| ||.+++.++..... . . ......+.. +. . ......++.
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~p-gG~l~~~~~~~~~~---~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T 2p35_A 101 ANAVFQWVPD--HLAVLSQLMDQLES-GGVLAVQMPDNLQE---P--T--HIAMHETADGGPWKDAFSGGGLRRKPLPPP 170 (259)
T ss_dssp EESCGGGSTT--HHHHHHHHGGGEEE-EEEEEEEEECCTTS---H--H--HHHHHHHHHHSTTGGGC-------CCCCCH
T ss_pred EeCchhhCCC--HHHHHHHHHHhcCC-CeEEEEEeCCCCCc---H--H--HHHHHHHhcCcchHHHhccccccccCCCCH
Confidence 9999999875 45899999999999 99999987532111 0 0 000001100 00 0 012355789
Q ss_pred HHHHHHHHHcCCcee
Q 018565 324 KEWDYVLRQAGFSRY 338 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~ 338 (354)
++|.++|+++||++.
T Consensus 171 ~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 171 SDYFNALSPKSSRVD 185 (259)
T ss_dssp HHHHHHHGGGEEEEE
T ss_pred HHHHHHHHhcCCceE
Confidence 999999999999743
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=133.44 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=106.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEecc-cccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKW-VLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~-~lh~ 259 (354)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999987 568999999 888888765 2389999999987 544 599999998 9999
Q ss_pred CC-hHHHHHHHHHHHHhcCCCCceEEEEeeeeCC---CCCCC--c--------chhh----hhhhccHHhhcc-------
Q 018565 260 WG-DDECIKILKNCKEAITKDKGKVIIVEAIIEE---DDGVD--N--------KFKS----VRLMLDMVMMAH------- 314 (354)
Q Consensus 260 ~~-~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~---~~~~~--~--------~~~~----~~~~~~l~~~~~------- 314 (354)
++ +++..++|++++++|+| ||.+++....... ..... . .+.. ......+.++..
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE-GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE-EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred cCCHHHHHHHHHHHHHhcCC-CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 84 36778999999999999 9988874321100 00000 0 0000 000000000100
Q ss_pred ---cCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 315 ---TNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 315 ---~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
....+.++.++|.++|+++||+++++...
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 00124569999999999999999998754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=133.96 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=103.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccC-----------CCeEEeecCCCC-CC--CcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKC-----------HGVEHVGGDMFD-GV--PEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~--~~~D~i~ 252 (354)
.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++. .++++..+|+.. +. ..||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 4568999999999999999999988889999999 8888887641 289999999866 33 3599999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH----H
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD----Y 328 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~----~ 328 (354)
+..++|+++++...++|++++++||| ||.+++.... +.... + ........... .....++.+++. +
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~-~~~~~----~---~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 177 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQP-KIVIVTTPNI-EYNVK----F---ANLPAGKLRHK-DHRFEWTRSQFQNWANK 177 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCC-SEEEEEEEBH-HHHHH----T---C------------CCSCBCHHHHHHHHHH
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCC-CEEEEEccCc-ccchh----h---ccccccccccc-ccccccCHHHHHHHHHH
Confidence 99999999988888999999999999 9966554431 10000 0 00000000001 223446888888 8
Q ss_pred HHHHcCCceeE
Q 018565 329 VLRQAGFSRYN 339 (354)
Q Consensus 329 ll~~aGf~~~~ 339 (354)
+++++||++..
T Consensus 178 ~~~~~Gf~v~~ 188 (217)
T 3jwh_A 178 ITERFAYNVQF 188 (217)
T ss_dssp HHHHSSEEEEE
T ss_pred HHHHcCceEEE
Confidence 99999998754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=141.63 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=105.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccC-----------------------------------
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKC----------------------------------- 231 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 231 (354)
....+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3578999999999999999999999999999999 8888877641
Q ss_pred -----------------------------CCeEEeecCCCCCC--------CcceEEEeccccccC----ChHHHHHHHH
Q 018565 232 -----------------------------HGVEHVGGDMFDGV--------PEADAAIIKWVLHDW----GDDECIKILK 270 (354)
Q Consensus 232 -----------------------------~~v~~~~~d~~~~~--------~~~D~i~~~~~lh~~----~~~~~~~~L~ 270 (354)
.+|+|..+|+.... +.||+|++..+++++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998622 359999999999654 6778899999
Q ss_pred HHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHH--cCCceeEEEEc
Q 018565 271 NCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQ--AGFSRYNITSI 343 (354)
Q Consensus 271 ~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~--aGf~~~~~~~~ 343 (354)
+++++|+| ||.|++.......... ........... .....+..+++.++|.+ +||+.+++...
T Consensus 205 ~~~~~Lkp-GG~lil~~~~~~~y~~-------~~~~~~~~~~~--~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLRP-GGILVLEPQPWSSYGK-------RKTLTETIYKN--YYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEEE-EEEEEEECCCHHHHHT-------TTTSCHHHHHH--HHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhCC-CcEEEEecCCchhhhh-------hhcccHHHHhh--hhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999 9988874322111000 00000000000 11123347899999999 99998887655
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=137.15 Aligned_cols=148 Identities=17% Similarity=0.134 Sum_probs=109.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C-CC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G-VP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~-~~--~~D~i~~~~~ 256 (354)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3579999999999999999987 679999999 888888775 2689999999988 3 33 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc-------ccCCcccCCHHHHHHH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA-------HTNKGKERSLKEWDYV 329 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~g~~~t~~e~~~l 329 (354)
+|++++. ..+|++++++||| ||.+++.+........ .. .....+...... .......++.+++.++
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP-GGVLSLMFYNAHGLLM-HN---MVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLW 218 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE-EEEEEEEEEBHHHHHH-HH---HHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHH
T ss_pred hhcccCH--HHHHHHHHHHcCC-CeEEEEEEeCCchHHH-HH---HHhcCHHHHhhhccccccccCCCCCCCCHHHHHHH
Confidence 9999865 5899999999999 9999998764322100 00 000000000000 0012355789999999
Q ss_pred HHHcCCceeEEEEcCC
Q 018565 330 LRQAGFSRYNITSIHA 345 (354)
Q Consensus 330 l~~aGf~~~~~~~~~~ 345 (354)
|+++||+++++..+..
T Consensus 219 l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 219 LEEAGWQIMGKTGVRV 234 (285)
T ss_dssp HHHTTCEEEEEEEESS
T ss_pred HHHCCCceeeeeeEEE
Confidence 9999999999887654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=131.29 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=106.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-----C-Cc-ceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-----V-PE-ADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-----~-~~-~D~i~~~~~lh 258 (354)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++..+|+.+. . .. ||+|++..++|
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 50 GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 345689999999999999999987 668999999 89999888777888888877551 1 23 99999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc-----cCCcccCCHHHHHHHHHHc
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH-----TNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~g~~~t~~e~~~ll~~a 333 (354)
.++ ...+|++++++||| ||.+++.+........ .. +. ..+........ ......++.++|.++|+++
T Consensus 128 -~~~--~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 199 (227)
T 3e8s_A 128 -HQD--IIELLSAMRTLLVP-GGALVIQTLHPWSVAD-GD-YQ--DGWREESFAGFAGDWQPMPWYFRTLASWLNALDMA 199 (227)
T ss_dssp -SSC--CHHHHHHHHHTEEE-EEEEEEEECCTTTTCT-TC-CS--CEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHT
T ss_pred -hhh--HHHHHHHHHHHhCC-CeEEEEEecCccccCc-cc-cc--cccchhhhhccccCcccceEEEecHHHHHHHHHHc
Confidence 444 35899999999999 9999998765433221 10 00 00000000000 0112456999999999999
Q ss_pred CCceeEEEE
Q 018565 334 GFSRYNITS 342 (354)
Q Consensus 334 Gf~~~~~~~ 342 (354)
||+++++..
T Consensus 200 Gf~~~~~~~ 208 (227)
T 3e8s_A 200 GLRLVSLQE 208 (227)
T ss_dssp TEEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999876
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=132.85 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=113.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH------Hhhhccc-------CCCeEEeecC-C
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PH------VVCVAEK-------CHGVEHVGGD-M 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~~v~~~~~d-~ 241 (354)
.+++.++ ..++.+|||||||+|.++..+++++ |+.+++++|+ +. +++.+++ .+++++..+| +
T Consensus 34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 3444444 5677899999999999999999985 7789999999 54 6776654 2689999998 5
Q ss_pred CC---CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhh-hhccHHh--hc
Q 018565 242 FD---GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVR-LMLDMVM--MA 313 (354)
Q Consensus 242 ~~---~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~-~~~~l~~--~~ 313 (354)
.. +++ .||+|++..++|++++.. .+++.++++++| ||++++.+...+.... .. ..... ....... ..
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~-gG~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 186 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV-CDHVDVAEWSMQPTAL-DQ-IGHLQAAMIQGLLYAIA 186 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT-CSEEEEEEECSSCSSG-GG-HHHHHHHHHHHHHHHHS
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC-CCEEEEEEecCCCCch-hh-hhHHHHHHHHHHHhhcc
Confidence 43 333 499999999999998775 478888888888 9999999987765432 11 10000 0000000 00
Q ss_pred ---ccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 314 ---HTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 314 ---~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.......++.+++.++++++||+++++..+
T Consensus 187 ~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 187 PSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 001124679999999999999999988766
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-15 Score=129.69 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=80.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEecc-cccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKW-VLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~-~lh~ 259 (354)
+..+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|++.. ++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999998876 68999999 888888765 3679999999987 444 499999986 8988
Q ss_pred C-ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 260 W-GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 260 ~-~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+ +.+...++|++++++|+| ||.+++.
T Consensus 110 ~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 136 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTD-GGKLLFD 136 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 7 556778999999999999 9988873
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=131.28 Aligned_cols=133 Identities=5% Similarity=-0.084 Sum_probs=105.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------------------CCCeEEeecCCCC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------------------CHGVEHVGGDMFD 243 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~d~~~ 243 (354)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++..+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 669999999 888887743 1579999999998
Q ss_pred -CC---CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcc
Q 018565 244 -GV---PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGK 319 (354)
Q Consensus 244 -~~---~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~ 319 (354)
+. ..||+|++..++|+++++...+++++++++||| ||+++++....+.... . ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp-GG~l~l~~~~~~~~~~-~------------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK-EFQYLVAVLSYDPTKH-A------------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE-EEEEEEEEEECCTTSC-C------------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC-CeEEEEEEEecCCccC-C------------------CCCC
Confidence 43 459999999999999988888999999999999 9999876655432111 0 0111
Q ss_pred cCCHHHHHHHHHHcCCceeEEEEc
Q 018565 320 ERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 320 ~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
..+.+++.++++. +|++......
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2579999999988 5998877554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=132.28 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=109.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCC-------cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVP-------EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~-------~~D~i~~~ 254 (354)
..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999977 8999999 888888765 4589999999998 322 28999999
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhh--hhhccHH-hhcccCCcccCCHHHHHHHHH
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSV--RLMLDMV-MMAHTNKGKERSLKEWDYVLR 331 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~--~~~~~l~-~~~~~~~g~~~t~~e~~~ll~ 331 (354)
.++|++++++..++|++++++||| ||++++++...++... ....... .....+. ..........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK-QGAMYLIELGTGCIDF-FNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT-TCEEEEEEECTTHHHH-HHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC-
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC-CCEEEEEeCCccccHH-HHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh-
Confidence 999999988889999999999999 9999999875432110 0000000 0000000 00000112346899999999
Q ss_pred HcCCceeEEEEc
Q 018565 332 QAGFSRYNITSI 343 (354)
Q Consensus 332 ~aGf~~~~~~~~ 343 (354)
+||++++...+
T Consensus 209 -aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 -PDFEILSQGEG 219 (245)
T ss_dssp -TTEEEEEEECC
T ss_pred -CCCEEEecccc
Confidence 99999886543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-15 Score=126.52 Aligned_cols=137 Identities=19% Similarity=0.138 Sum_probs=102.5
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHHH
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDEC 265 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~~ 265 (354)
..+|||||||+|.++..+++. +++|+ +.+++.+++. ++++..+|+.+ +.+ .||+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 689999999999999888664 89999 8888888754 79999999887 554 49999999999998764
Q ss_pred HHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 266 IKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 266 ~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.++|++++++|+| ||.+++.+..... . ......... ...........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~p-gG~l~i~~~~~~~--~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKK-GGYLIVGIVDRES--F----LGREYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEE-EEEEEEEEECSSS--H----HHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCC-CcEEEEEEeCCcc--H----HHHHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999 9999997753211 1 100000000 0000002235579999999999999999988765
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=120.75 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=105.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEec-cccccCC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIK-WVLHDWG 261 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~-~~lh~~~ 261 (354)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 46789999999999999999987 568999999 888888876 5679999999988 554 49999998 8999988
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEE
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 341 (354)
++....+|++++++|+| ||.+++.... ...++.+++.++++++||+++++.
T Consensus 123 ~~~~~~~l~~~~~~l~~-~G~l~~~~~~----------------------------~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 123 EDGREPALANIHRALGA-DGRAVIGFGA----------------------------GRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp HHHHHHHHHHHHHHEEE-EEEEEEEEET----------------------------TSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCC-CCEEEEEeCC----------------------------CCCcCHHHHHHHHHHcCCEEeeee
Confidence 88888999999999999 9999885421 012468899999999999999875
Q ss_pred Ec
Q 018565 342 SI 343 (354)
Q Consensus 342 ~~ 343 (354)
..
T Consensus 174 ~~ 175 (195)
T 3cgg_A 174 ES 175 (195)
T ss_dssp SS
T ss_pred cc
Confidence 54
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=125.01 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=109.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC---CCC--cce
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD---GVP--EAD 249 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~---~~~--~~D 249 (354)
...+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++ ...++..+|+.+ +++ .||
T Consensus 22 ~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 22 NPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKE-KLDHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp CHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHT-TSSEEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHH-hCCcEEEcchhhcCCCCCCCccC
Confidence 345555444 46689999999999999999988 4 89999999 888888875 224788888875 333 499
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhh-hhhccH---HhhcccCCcccCCHHH
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSV-RLMLDM---VMMAHTNKGKERSLKE 325 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~-~~~~~l---~~~~~~~~g~~~t~~e 325 (354)
+|++..++|++++. ..+|++++++|+| ||.+++..+....... .... ...+.. ..... .....++.++
T Consensus 96 ~v~~~~~l~~~~~~--~~~l~~~~~~L~~-gG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 167 (230)
T 3cc8_A 96 CVIFGDVLEHLFDP--WAVIEKVKPYIKQ-NGVILASIPNVSHISV----LAPLLAGNWTYTEYGLLDK-THIRFFTFNE 167 (230)
T ss_dssp EEEEESCGGGSSCH--HHHHHHTGGGEEE-EEEEEEEEECTTSHHH----HHHHHTTCCCCBSSSTTBT-TCCCCCCHHH
T ss_pred EEEECChhhhcCCH--HHHHHHHHHHcCC-CCEEEEEeCCcchHHH----HHHHhcCCceeccCCCCCc-ceEEEecHHH
Confidence 99999999998865 4899999999999 9999997643221000 0000 000000 00000 1224579999
Q ss_pred HHHHHHHcCCceeEEEEcC
Q 018565 326 WDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~~ 344 (354)
|.++++++||+++++....
T Consensus 168 ~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 168 MLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHcCCeEEEEEecc
Confidence 9999999999999887753
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=128.44 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=105.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 578999999 888887764 4789999999987 554 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHh-hccc--CCcccCCHHHHHHHHHHcC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM-MAHT--NKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--~~g~~~t~~e~~~ll~~aG 334 (354)
|++++. ..++++++++||| ||.+++. ...++ .. . .......+..+.. .... .....++.+++.++|+++|
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p-gG~l~~~-~~~~~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 187 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP-GGALLEG-WDQAE-AS-P-EWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLG 187 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE-EEEEEEE-EEEEC-CC-H-HHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred hhcCCH--HHHHHHHHHHCCC-CcEEEEE-ecCCC-cc-H-HHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcC
Confidence 998754 5899999999999 9999987 22221 11 1 0000011111111 1110 0224567899999999999
Q ss_pred CceeEEE
Q 018565 335 FSRYNIT 341 (354)
Q Consensus 335 f~~~~~~ 341 (354)
|+++.+.
T Consensus 188 f~~~~~~ 194 (263)
T 2yqz_A 188 LKPRTRE 194 (263)
T ss_dssp CCCEEEE
T ss_pred CCcceEE
Confidence 9987653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=126.95 Aligned_cols=152 Identities=10% Similarity=-0.007 Sum_probs=108.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
..+..+|||+|||+|..+..++.. ++.+++++|. +.+++.+++ ..++++..+|+.+ +++ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345689999999999985555444 5679999999 888887764 4679999999988 554 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
|+++.++..+++++++++||| ||.+++.+...++... ..........+.............++.+++.+++++.||..
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP-GGLACINFLTTKDERY-NKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEETTSTTT-TCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC-CcEEEEEEecccchhc-cchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCcee
Confidence 999878889999999999999 9999998876554321 10000000000000000001125668999999999999977
Q ss_pred eEEE
Q 018565 338 YNIT 341 (354)
Q Consensus 338 ~~~~ 341 (354)
.+..
T Consensus 178 ~~~~ 181 (209)
T 2p8j_A 178 KEDR 181 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6553
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.3e-15 Score=129.65 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=105.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CC------------------------------
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CH------------------------------ 232 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------ 232 (354)
..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 34568999999999999998888755 58999999 888887754 12
Q ss_pred --Ce-EEeecCCCC-CC------CcceEEEeccccccCCh--HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcch
Q 018565 233 --GV-EHVGGDMFD-GV------PEADAAIIKWVLHDWGD--DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKF 300 (354)
Q Consensus 233 --~v-~~~~~d~~~-~~------~~~D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~ 300 (354)
++ ++..+|+.+ +. +.||+|++..++|++++ ++...+|++++++||| ||.+++.+..... . +
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~~~~--~----~ 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP-GGFLVMVDALKSS--Y----Y 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEESSCC--E----E
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC-CcEEEEEecCCCc--e----E
Confidence 27 899999987 22 24999999999995433 3677999999999999 9999998743211 1 0
Q ss_pred hhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 301 KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 301 ~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
. .. + .. ......+.+++.++|+++||+++++...+
T Consensus 206 ~-~~---~---~~--~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 M-IG---E---QK--FSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp E-ET---T---EE--EECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred E-cC---C---cc--ccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0 00 0 00 11234589999999999999999987764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=130.29 Aligned_cols=142 Identities=12% Similarity=0.067 Sum_probs=96.4
Q ss_pred CCCceEEEecCCccHHHH----HHHHHCCCCeE--EEeec-hHHhhhccc-------CCCeEE--eecCCCC-C------
Q 018565 188 DGIETLVDIGGNDGTTLR----TLTKAFPRIRG--INFDL-PHVVCVAEK-------CHGVEH--VGGDMFD-G------ 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~~v~~--~~~d~~~-~------ 244 (354)
.+..+|||||||+|.++. .+..++|+.++ +++|. ++|++.+++ ..++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997654 44556788854 99999 888887764 134544 4455433 1
Q ss_pred C--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhc-ccCCcccC
Q 018565 245 V--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMA-HTNKGKER 321 (354)
Q Consensus 245 ~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~g~~~ 321 (354)
+ ..||+|++.+++|++++. .++|++++++||| ||++++.+... ... +.. .+....... .......+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp-gG~l~i~~~~~--~~~----~~~--~~~~~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT-NAKMLIIVVSG--SSG----WDK--LWKKYGSRFPQDDLCQYI 199 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE-EEEEEEEEECT--TSH----HHH--HHHHHGGGSCCCTTCCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC-CcEEEEEEecC--Ccc----HHH--HHHHHHHhccCCCcccCC
Confidence 2 249999999999999875 4889999999999 99999986431 111 110 010110000 00112457
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 018565 322 SLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 322 t~~e~~~ll~~aGf~~~~~ 340 (354)
+.++|.++|+++||+.++.
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998763
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-15 Score=131.81 Aligned_cols=141 Identities=16% Similarity=0.040 Sum_probs=100.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----C------------------------------
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----C------------------------------ 231 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~------------------------------ 231 (354)
..++.+|||||||+|.++..++.... .+++++|+ +.+++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 34678999999999987766554421 26999999 888886653 0
Q ss_pred -CCeE-EeecCCCCC-------CCcceEEEeccccccCC--hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcch
Q 018565 232 -HGVE-HVGGDMFDG-------VPEADAAIIKWVLHDWG--DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKF 300 (354)
Q Consensus 232 -~~v~-~~~~d~~~~-------~~~~D~i~~~~~lh~~~--~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~ 300 (354)
.+++ +..+|+.++ .++||+|+++.+||+.. .++..++|++++++||| ||.+++.+..... . +
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP-GG~li~~~~~~~~--~----~ 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP-GGHLVTTVTLRLP--S----Y 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEESSCC--E----E
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC-CcEEEEEEeecCc--c----c
Confidence 1233 888998872 23599999999999852 35667899999999999 9999998653211 0 0
Q ss_pred hhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 301 KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 301 ~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
...-. . .....++.+++.++|+++||+++++...+
T Consensus 205 -----~~g~~--~--~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 205 -----MVGKR--E--FSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp -----EETTE--E--EECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred -----eeCCe--E--eeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 00000 0 11124589999999999999999887653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=129.33 Aligned_cols=154 Identities=12% Similarity=0.036 Sum_probs=109.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC-C--cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV-P--EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~-~--~~D~i~~~~ 255 (354)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 46789999999999999998776 4568999999 888887765 2479999999988 55 2 499999999
Q ss_pred cccc--CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC-------CCCcc-h----------hh-hhhhccHHh--h
Q 018565 256 VLHD--WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD-------GVDNK-F----------KS-VRLMLDMVM--M 312 (354)
Q Consensus 256 ~lh~--~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~-------~~~~~-~----------~~-~~~~~~l~~--~ 312 (354)
++|+ .+.++..++|++++++|+| ||.+++..+...... . ..+ + +. ....+.+.. .
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 219 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRP-GGYFIMTVPSRDVILERYKQGRM-SNDFYKIELEKMEDVPMESVREYRFTLLDS 219 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEEEECHHHHHHHHHHTCC-BCSSEEEECCCCSSCCTTTCCEEEEEETTS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHccCcc-CCeeEEEEeCccccccccccceEEEEEchh
Confidence 9998 5667788999999999999 999998775421100 0 000 0 00 000000000 0
Q ss_pred cccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 313 AHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 313 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
........++.+++.++++++||+++++....
T Consensus 220 ~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 220 VNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp CSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 00011245689999999999999999987753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=127.82 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=84.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~ 264 (354)
...+|||||||+|..+..|++.+ .+++++|+ +.+++.+++.++++++.+|+.+ +++ .||+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 45799999999999999999875 58999999 9999999888899999999988 665 49999999999987643
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 265 CIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
+++++++++||| ||.|++.....
T Consensus 116 --~~~~e~~rvLkp-gG~l~~~~~~~ 138 (257)
T 4hg2_A 116 --RFWAELRRVARP-GAVFAAVTYGL 138 (257)
T ss_dssp --HHHHHHHHHEEE-EEEEEEEEECC
T ss_pred --HHHHHHHHHcCC-CCEEEEEECCC
Confidence 689999999999 99999887543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-15 Score=133.89 Aligned_cols=99 Identities=17% Similarity=0.126 Sum_probs=84.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC-C---CC--cce
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD-G---VP--EAD 249 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~-~---~~--~~D 249 (354)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.+..+|+.+ + ++ .||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 345689999999999999999987 459999999 888887753 2578889999887 4 33 499
Q ss_pred EEEec-cccccCCh-----HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 250 AAIIK-WVLHDWGD-----DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 250 ~i~~~-~~lh~~~~-----~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+|++. +++|++++ ++..++|++++++||| ||.+++...
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 176 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP-GGLLVIDHR 176 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE-EEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC-CeEEEEEeC
Confidence 99998 99999988 6788999999999999 999998764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=126.86 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC-CC--------Ccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD-GV--------PEA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~--------~~~ 248 (354)
.+..+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8999999999 888888764 4689999999988 42 359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
|+|++..++|++ +..+++++++++|+| ||.+++.+...
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~Lkp-gG~l~i~~~~~ 152 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLRK-DGTIAIWGYAD 152 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEEE-EEEEEEEEEEE
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcCC-CcEEEEEecCC
Confidence 999999999998 356899999999999 99999965443
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-14 Score=126.92 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=105.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~ 259 (354)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|++..++|+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFMF 196 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchhh
Confidence 36789999999999999999987 569999999 888887765 3389999999988 444 4999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
++++....++++++++|+| ||.++++.....+... .+ . .....++.+++.++++. |+++.
T Consensus 197 ~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~~---------------~-~~~~~~~~~~l~~~~~~--~~~~~ 256 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNV-GGYNLIVAAMSTDDVP-CP---------------L-PFSFTFAENELKEYYKD--WEFLE 256 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEE-EEEEEEEEEBCCSSSC-CS---------------S-CCSCCBCTTHHHHHTTT--SEEEE
T ss_pred CCHHHHHHHHHHHHHhcCC-CcEEEEEEecCCCCCC-CC---------------C-CccccCCHHHHHHHhcC--CEEEE
Confidence 9988899999999999999 9998887765544322 10 0 12235567888888855 88877
Q ss_pred EE
Q 018565 340 IT 341 (354)
Q Consensus 340 ~~ 341 (354)
..
T Consensus 257 ~~ 258 (286)
T 3m70_A 257 YN 258 (286)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.3e-14 Score=119.79 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=96.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~ 264 (354)
.+..+|||||||+|.++..+. .+++++|+... ++++..+|+.+ +++ .||+|++..++|+ + +
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~--~ 129 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-T--N 129 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCCS-S--C
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhccc-c--C
Confidence 456899999999999988772 68999998322 57888999887 554 4999999999984 3 3
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 265 CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
...+|++++++|+| ||.+++.+... ...+.++|.++++++||++++....+
T Consensus 130 ~~~~l~~~~~~L~~-gG~l~i~~~~~----------------------------~~~~~~~~~~~l~~~Gf~~~~~~~~~ 180 (215)
T 2zfu_A 130 IRDFLEEANRVLKP-GGLLKVAEVSS----------------------------RFEDVRTFLRAVTKLGFKIVSKDLTN 180 (215)
T ss_dssp HHHHHHHHHHHEEE-EEEEEEEECGG----------------------------GCSCHHHHHHHHHHTTEEEEEEECCS
T ss_pred HHHHHHHHHHhCCC-CeEEEEEEcCC----------------------------CCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 46899999999999 99999976321 01168999999999999999876666
Q ss_pred CceeEEEEeC
Q 018565 345 AVQSLIEAFP 354 (354)
Q Consensus 345 ~~~~~i~~~~ 354 (354)
....++.++|
T Consensus 181 ~~~~~~~~~k 190 (215)
T 2zfu_A 181 SHFFLFDFQK 190 (215)
T ss_dssp TTCEEEEEEE
T ss_pred CeEEEEEEEe
Confidence 6666666653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=119.10 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=84.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EAD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D 249 (354)
.++.... ..+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ +||
T Consensus 32 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 32 EIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc--ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 3444444 456689999999999999999986 679999999 888888764 3579999999988 544 499
Q ss_pred EEEec-cccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 250 AAIIK-WVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 250 ~i~~~-~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+|++. ..+++++.++..++|++++++|+| ||.+++.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~li~~ 144 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKP-GGVFITD 144 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 99986 566777777889999999999999 9988763
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=133.79 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=108.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC------CC--C
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD------GV--P 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~------~~--~ 246 (354)
...+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. ++ .
T Consensus 96 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 96 ARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 355666666 667889999999999999999986 559999999 8888888753 33333322221 11 3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
+||+|++.+++||+++ ...+|++++++||| ||.+++..+...... ....+..... .....++.++|
T Consensus 171 ~fD~I~~~~vl~h~~d--~~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~----------~~~~~~~~~~-~~~~~~s~~~l 236 (416)
T 4e2x_A 171 PANVIYAANTLCHIPY--VQSVLEGVDALLAP-DGVFVFEDPYLGDIV----------AKTSFDQIFD-EHFFLFSATSV 236 (416)
T ss_dssp CEEEEEEESCGGGCTT--HHHHHHHHHHHEEE-EEEEEEEEECHHHHH----------HHTCGGGCST-TCCEECCHHHH
T ss_pred CEEEEEECChHHhcCC--HHHHHHHHHHHcCC-CeEEEEEeCChHHhh----------hhcchhhhhh-hhhhcCCHHHH
Confidence 5999999999999985 46899999999999 999998654322100 0001111111 33456799999
Q ss_pred HHHHHHcCCceeEEEEcC
Q 018565 327 DYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~ 344 (354)
.++++++||+++++...+
T Consensus 237 ~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 237 QGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHcCCEEEEEEEcc
Confidence 999999999999998875
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=119.79 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=101.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCC-----C-CcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDG-----V-PEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~-----~-~~~D~i~~~~ 255 (354)
+.+..+|||+|||+|.++..+++.++..+++++|+ +.+++.+++ ..++.++.+|+.++ . ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55778999999999999999999988789999999 888776543 47899999998762 2 2499998
Q ss_pred ccccCChH-HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 256 VLHDWGDD-ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 256 ~lh~~~~~-~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
|++++. ....+++++.+.||| ||.+++. ........ ..+ . .....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~-~~~~~~~~-~~~---------~---------~~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK-GGYGMIA-IKARSIDV-TKD---------P---------KEIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE-EEEEEEE-EEGGGTCS-SSC---------H---------HHHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC-CcEEEEE-EecCCCCC-CCC---------H---------HHhhHHHHH-HHHHCC
Confidence 444433 446779999999999 9999997 22211111 100 0 011246777 899999
Q ss_pred CceeEEEEcCCc---eeEEEEe
Q 018565 335 FSRYNITSIHAV---QSLIEAF 353 (354)
Q Consensus 335 f~~~~~~~~~~~---~~~i~~~ 353 (354)
|+.+++.++..+ +.++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999999887554 6666654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=115.95 Aligned_cols=133 Identities=8% Similarity=0.034 Sum_probs=101.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~ 259 (354)
+. +|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|++. +.+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999886 569999999 888887765 3489999999988 544 49999984 344
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
++.+....+|++++++|+| ||.+++.+........ . .. ........++.+++.++|+ ||++++
T Consensus 105 ~~~~~~~~~l~~~~~~L~p-gG~l~~~~~~~~~~~~--------~--~~----~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKP-GGVFILEGFAPEQLQY--------N--TG----GPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCS-SEEEEEEEECTTTGGG--------T--SC----CSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred CCHHHHHHHHHHHHHhcCC-CcEEEEEEeccccccC--------C--CC----CCCcceeecCHHHHHHHhc--CceEEE
Confidence 5777788999999999999 9999998765322100 0 00 0001124679999999999 999998
Q ss_pred EEEc
Q 018565 340 ITSI 343 (354)
Q Consensus 340 ~~~~ 343 (354)
+...
T Consensus 168 ~~~~ 171 (202)
T 2kw5_A 168 ANNL 171 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-14 Score=129.36 Aligned_cols=139 Identities=16% Similarity=0.070 Sum_probs=97.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CC---------------------------------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CH--------------------------------- 232 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--------------------------------- 232 (354)
++.+|||||||+|.+. .++...+..+++++|+ +.+++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3343345569999999 888876653 10
Q ss_pred -CeEEeecCCCC--C-----CC--cceEEEeccccccCChH--HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcch
Q 018565 233 -GVEHVGGDMFD--G-----VP--EADAAIIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKF 300 (354)
Q Consensus 233 -~v~~~~~d~~~--~-----~~--~~D~i~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~ 300 (354)
.++++.+|+.+ + ++ .||+|++..++|+++++ +..++|++++++||| ||++++.+..... ..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp-GG~l~~~~~~~~~-~~----- 222 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP-GGHLLLIGALEES-WY----- 222 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEEESCC-EE-----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC-CCEEEEEEecCcc-eE-----
Confidence 14566668876 2 22 29999999999985533 677999999999999 9999998643211 00
Q ss_pred hhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 301 KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 301 ~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
. . .+ .. .....++.++|.++|+++||+++++...+
T Consensus 223 ~-~---~~----~~-~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 223 L-A---GE----AR-LTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp E-E---TT----EE-EECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred E-c---CC----ee-eeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0 0 00 00 11235689999999999999999876654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=120.44 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=102.4
Q ss_pred CCceEEEecCCc--cHHHHHH-HHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---------Ccce
Q 018565 189 GIETLVDIGGND--GTTLRTL-TKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---------PEAD 249 (354)
Q Consensus 189 ~~~~vLDvG~G~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---------~~~D 249 (354)
+..+|||||||+ +..+..+ .+..|+.+++++|. |.|++.++. ..+++|+.+|+.++. ..+|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 567999999997 4344444 45689999999999 999999875 247999999998730 1255
Q ss_pred -----EEEeccccccCChHH-HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCH
Q 018565 250 -----AAIIKWVLHDWGDDE-CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSL 323 (354)
Q Consensus 250 -----~i~~~~~lh~~~~~~-~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~ 323 (354)
+++++.+||++++.+ ...++++++++|+| ||.|++.+...+.... . .....+.....- .....||.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P-GG~Lvls~~~~d~~p~----~--~~~~~~~~~~~g-~p~~~rs~ 229 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS-GSYLAMSIGTAEFAPQ----E--VGRVAREYAARN-MPMRLRTH 229 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT-TCEEEEEEECCTTSHH----H--HHHHHHHHHHTT-CCCCCCCH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC-CcEEEEEeccCCCCHH----H--HHHHHHHHHhcC-CCCccCCH
Confidence 688999999999875 57899999999999 9999998876542111 0 111112221111 22466899
Q ss_pred HHHHHHHHHcCCceeE
Q 018565 324 KEWDYVLRQAGFSRYN 339 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~ 339 (354)
+|+.++|. ||++++
T Consensus 230 ~ei~~~f~--Glelve 243 (277)
T 3giw_A 230 AEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHTTT--TSEECT
T ss_pred HHHHHHhC--CCcccC
Confidence 99999994 998765
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-14 Score=121.90 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=85.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CC-CcceEEEecccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GV-PEADAAIIKWVLHD 259 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~-~~~D~i~~~~~lh~ 259 (354)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..||+|++..++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999874 58999999 888888765 3589999999998 42 24999999999999
Q ss_pred CCh-HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 260 WGD-DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 260 ~~~-~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+++ +...++|++++++||| ||.+++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p-gG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP-GGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE-EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCEEEEEec
Confidence 986 5567899999999999 999998665
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=116.15 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=105.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC-CcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV-PEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~-~~~D~i~~~~~lh~ 259 (354)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ ..++++..+|+.+.. ..||+|++..++|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3568999999999999999776 56779999999 888887765 234999999998843 45999999887764
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
...+++++.++|+| ||.+++.+.... +.+++.++++++||+.++
T Consensus 138 -----~~~~l~~~~~~L~~-gG~l~~~~~~~~------------------------------~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNE-DGQVIFSGIDYL------------------------------QLPKIEQALAENSFQIDL 181 (205)
T ss_dssp -----HHHHGGGSGGGEEE-EEEEEEEEEEGG------------------------------GHHHHHHHHHHTTEEEEE
T ss_pred -----HHHHHHHHHHhcCC-CCEEEEEecCcc------------------------------cHHHHHHHHHHcCCceEE
Confidence 46889999999999 999998654210 367788999999999999
Q ss_pred EEEcCCceeEEEEeC
Q 018565 340 ITSIHAVQSLIEAFP 354 (354)
Q Consensus 340 ~~~~~~~~~~i~~~~ 354 (354)
+.......+++.-+|
T Consensus 182 ~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 182 KMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred eeccCCEEEEEEecc
Confidence 988888888877654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-13 Score=112.64 Aligned_cols=124 Identities=14% Similarity=0.209 Sum_probs=98.9
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC---CCc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG---VPE 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~---~~~ 247 (354)
.++..+. ..+..+|||+|||+|.++..+++.+|..+++++|+ +++++.+++ .++++++.+|+.+. .+.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3444455 56778999999999999999999999999999999 888888765 36899999999773 245
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
||+|++...++ ...++++++.++|+| ||++++..... .+.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp-gG~l~~~~~~~------------------------------~~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS-EGVIVLNAVTL------------------------------DTLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT-TCEEEEEECBH------------------------------HHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC-CeEEEEEeccc------------------------------ccHHHHH
Confidence 99999988776 345899999999999 99999854221 0256778
Q ss_pred HHHHHcCCceeEE
Q 018565 328 YVLRQAGFSRYNI 340 (354)
Q Consensus 328 ~ll~~aGf~~~~~ 340 (354)
++++++|| .+++
T Consensus 153 ~~l~~~g~-~~~~ 164 (204)
T 3e05_A 153 EFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHTTC-EEEE
T ss_pred HHHHHCCC-ceeE
Confidence 88999998 4443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=118.95 Aligned_cols=143 Identities=9% Similarity=0.034 Sum_probs=95.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhh----ccc------CCCeEEeecCCCC-CCCc-ceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCV----AEK------CHGVEHVGGDMFD-GVPE-ADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~d~~~-~~~~-~D~i~~ 253 (354)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++. .|.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999999 776664 221 3589999999988 5441 265552
Q ss_pred ---ccccc--cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 254 ---KWVLH--DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 254 ---~~~lh--~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
...+| ++++. ..+|++++++||| ||.+++......-... .. .+. ........+..+++..
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~----~~------~~~--~~~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP-GASFLVALNLHAWRPS----VP------EVG--EHPEPTPDSADEWLAP 169 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEE-EEEEEEEEEGGGBTTB----CG------GGT--TCCCCCHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCC-CcEEEEEecccccccc----cc------ccc--cCCccchHHHHHHHHH
Confidence 22221 33333 5889999999999 9999884322111111 00 000 0001112223556888
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
+++++||++.++..+.
T Consensus 170 ~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 170 RYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCCceeeeccc
Confidence 9999999999887654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=118.72 Aligned_cols=146 Identities=15% Similarity=0.110 Sum_probs=93.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHhhhc---cc------CCCeEEeecCCCC-CCCcceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL--PHVVCVA---EK------CHGVEHVGGDMFD-GVPEADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~------~~~v~~~~~d~~~-~~~~~D~i~~~~ 255 (354)
.+..+|||||||+|.++..++++.|+.+++++|+ +.+++.| ++ ..++++..+|..+ +...+|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4668999999999999999999899999999999 3444443 43 3579999999877 322246555554
Q ss_pred ccccCChHH------HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHH
Q 018565 256 VLHDWGDDE------CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYV 329 (354)
Q Consensus 256 ~lh~~~~~~------~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~l 329 (354)
+.+.|+... ...+|++++++||| ||++++....... .. ..+. ...... . ........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp-GG~l~i~~~~~~~-~~-~~~~----~~~~~~---~-~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK-EAHFEFVTTYSDS-YE-EAEI----KKRGLP---L-LSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE-EEEEEEEECCCC------------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC-CcEEEEEEecccc-ch-hchh----hhcCCC---C-CChhhcchHHHHHH
Confidence 444443321 13689999999999 9999984433222 11 1000 000000 0 00011122359999
Q ss_pred HHHcCCceeEEEEcC
Q 018565 330 LRQAGFSRYNITSIH 344 (354)
Q Consensus 330 l~~aGf~~~~~~~~~ 344 (354)
++++||++.++...+
T Consensus 172 l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 172 LSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHTCEEEEEEEEC
T ss_pred HHHcCCCeeeeeecC
Confidence 999999998887654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-12 Score=108.55 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=95.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCC--cceEEEeccccccCChH--
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVP--EADAAIIKWVLHDWGDD-- 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~--~~D~i~~~~~lh~~~~~-- 263 (354)
+..+|||+|||+|.++..+++.. +++++|+ +.+++. ..++++..+|+.++.+ .||+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45699999999999999999876 9999999 888887 5789999999998654 49999998888865443
Q ss_pred -----HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 264 -----ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 264 -----~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
....+++++.+.+ | ||.+++++... .+.+++.++++++||+..
T Consensus 97 ~~~~~~~~~~~~~~~~~l-p-gG~l~~~~~~~------------------------------~~~~~l~~~l~~~gf~~~ 144 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-T-VGMLYLLVIEA------------------------------NRPKEVLARLEERGYGTR 144 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-C-SSEEEEEEEGG------------------------------GCHHHHHHHHHHTTCEEE
T ss_pred ccCCcchHHHHHHHHhhC-C-CCEEEEEEecC------------------------------CCHHHHHHHHHHCCCcEE
Confidence 3467888999888 9 99999866311 136788899999999998
Q ss_pred EEEEc
Q 018565 339 NITSI 343 (354)
Q Consensus 339 ~~~~~ 343 (354)
.+...
T Consensus 145 ~~~~~ 149 (170)
T 3q87_B 145 ILKVR 149 (170)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88765
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=125.80 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=90.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------CCCeEEeecC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------CHGVEHVGGD 240 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d 240 (354)
..+++.+. ..+..+|||||||+|..+..++...+..+++++|+ +.+++.|++ ..+|+|+.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34445455 66789999999999999999998887667999999 777665542 2689999999
Q ss_pred CCC-CC----CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCC
Q 018565 241 MFD-GV----PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDD 294 (354)
Q Consensus 241 ~~~-~~----~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~ 294 (354)
+.+ ++ +.+|+|+++++++ . ++..+.|+++++.||| ||+|++.|.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLKP-GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMKE-GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSCT-TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCCC-CcEEEEeecccCCCC
Confidence 998 54 3599999987764 2 4556788999999999 999999998887654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=115.85 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEeccccccCCh
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGD 262 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~ 262 (354)
+..+|||||||+|.++..+ +. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999998877 45 8999999 888888875 4689999999988 554 4999999999999875
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc--cCCcccCCHHHHHHHHHHcC
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH--TNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~g~~~t~~e~~~ll~~aG 334 (354)
. .++|++++++||| ||.+++.+...... +... ......... ....+.++.+++.++|+ |
T Consensus 111 ~--~~~l~~~~~~L~p-gG~l~i~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 111 V--ERVLLEARRVLRP-GGALVVGVLEALSP------WAAL--YRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp H--HHHHHHHHHHEEE-EEEEEEEEECTTSH------HHHH--HHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred H--HHHHHHHHHHcCC-CCEEEEEecCCcCc------HHHH--HHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 4 5899999999999 99999987542211 1100 000000000 01235679999999998 7
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-14 Score=124.34 Aligned_cols=133 Identities=14% Similarity=-0.005 Sum_probs=91.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC---CCC--cceEEEe---
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD---GVP--EADAAII--- 253 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~---~~~--~~D~i~~--- 253 (354)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.+++ ..+++++.+|... +.+ +||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999887664 7899999 999998875 5678888888654 333 4888864
Q ss_pred --ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHH
Q 018565 254 --KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLR 331 (354)
Q Consensus 254 --~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~ 331 (354)
...+++++ +...++++++++||| ||++++.+........ ...++ .-.....+.+...|.
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLkP-GG~l~f~~~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~L~ 198 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLKP-GGVLTYCNLTSWGELM--------KSKYS--------DITIMFEETQVPALL 198 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEE-EEEEEECCHHHHHHHT--------TTTCS--------CHHHHHHHHTHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeCC-CCEEEEEecCCchhhh--------hhhhh--------hhhhhhHHHHHHHHH
Confidence 44444443 456899999999999 9998875432211100 00000 001112456677888
Q ss_pred HcCCceeEE
Q 018565 332 QAGFSRYNI 340 (354)
Q Consensus 332 ~aGf~~~~~ 340 (354)
++||+...+
T Consensus 199 eaGF~~~~i 207 (236)
T 3orh_A 199 EAGFRRENI 207 (236)
T ss_dssp HHTCCGGGE
T ss_pred HcCCeEEEE
Confidence 999987654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=118.27 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=100.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CC-------CeEEeecCCCC---------CCC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CH-------GVEHVGGDMFD---------GVP 246 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------~v~~~~~d~~~---------~~~ 246 (354)
++.+|||||||+|..+..+++. ...+++++|+ +.+++.|++ .. +++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766654 3468999999 999998875 21 26677777722 122
Q ss_pred --cceEEEecccccc-CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCC-C--------c-chhh-hhhhc----c
Q 018565 247 --EADAAIIKWVLHD-WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGV-D--------N-KFKS-VRLML----D 308 (354)
Q Consensus 247 --~~D~i~~~~~lh~-~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~-~--------~-~~~~-~~~~~----~ 308 (354)
.||+|+|..++|+ ++.++...+|++++++||| ||.+++..+........ . . +... ..... +
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp-GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS-GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE-EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 5999999999997 4545567999999999999 99998876532110000 0 0 0000 00000 0
Q ss_pred H-Hhhcc---cCC--cccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 309 M-VMMAH---TNK--GKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 309 l-~~~~~---~~~--g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
. ..... +.. ....+.+++.++++++||++++....
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0 00000 011 12457899999999999999988664
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=115.10 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=104.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC--CcceEEEecc----
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV--PEADAAIIKW---- 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~--~~~D~i~~~~---- 255 (354)
+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|++++. ..||+|+++.
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID 188 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCC
Confidence 457999999999999999999999999999999 888887765 257999999999854 3599999973
Q ss_pred ---------ccccCCh----------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccC
Q 018565 256 ---------VLHDWGD----------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTN 316 (354)
Q Consensus 256 ---------~lh~~~~----------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (354)
++++.|. +...++++++.+.|+| ||.+++.. ..
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp-gG~l~~~~------~~--------------------- 240 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLLEH------GW--------------------- 240 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEEEC------CS---------------------
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC-CCEEEEEE------Cc---------------------
Confidence 3333331 3457899999999999 99888731 11
Q ss_pred CcccCCHHHHHHHHHHcCCceeEEEE-cCCceeEEEEeC
Q 018565 317 KGKERSLKEWDYVLRQAGFSRYNITS-IHAVQSLIEAFP 354 (354)
Q Consensus 317 ~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 354 (354)
.+.+++.++++++||+.++++. ..+...++.+++
T Consensus 241 ----~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 241 ----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 1367888999999999888765 455666776653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=112.13 Aligned_cols=141 Identities=14% Similarity=0.125 Sum_probs=101.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCC--C----CcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDG--V----PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~--~----~~~D~i~~~ 254 (354)
+.++.+|||+|||+|.++..+++. .|.-+++++|+ +++++.+++ ..++..+.+|..++ . ..+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678999999999999999999986 58899999999 888877654 56899998888763 1 237888753
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
. ++. ++...+++++++.||| ||+++|+......+.. .+ . . ...++-.+.|+++|
T Consensus 155 ~--~~~--~~~~~~l~~~~r~LKp-GG~lvI~ik~r~~d~~-~p------------------~-~-~~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 V--AQP--EQAAIVVRNARFFLRD-GGYMLMAIKARSIDVT-TE------------------P-S-EVYKREIKTLMDGG 208 (233)
T ss_dssp C--CCT--THHHHHHHHHHHHEEE-EEEEEEEEECCHHHHH-TC------------------C-C-HHHHHHHHHHHHTT
T ss_pred c--cCC--hhHHHHHHHHHHhccC-CCEEEEEEecccCCCC-CC------------------h-H-HHHHHHHHHHHHCC
Confidence 2 221 2446789999999999 9999987543222111 00 0 0 01233356788999
Q ss_pred CceeEEEEcCC---ceeEEEEe
Q 018565 335 FSRYNITSIHA---VQSLIEAF 353 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~~ 353 (354)
|+..+...+.. .+.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 99999888743 46666654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=119.86 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCceEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHhhhcccC----------------------------
Q 018565 189 GIETLVDIGGNDGT----TLRTLTKAFP----RIRGINFDL-PHVVCVAEKC---------------------------- 231 (354)
Q Consensus 189 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 231 (354)
+..+|+|+|||+|. ++..+++..| +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5555666645 468999999 8998887641
Q ss_pred ---------CCeEEeecCCCC-CCC---cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 232 ---------HGVEHVGGDMFD-GVP---EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 232 ---------~~v~~~~~d~~~-~~~---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.+|+|..+|+.+ +++ +||+|+|.+++++++++...+++++++++|+| ||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p-gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP-DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE-EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC-CcEEEE
Confidence 268999999998 454 59999999999999998889999999999999 998887
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-12 Score=108.07 Aligned_cols=141 Identities=15% Similarity=0.259 Sum_probs=106.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CC--CeEEeecCCCCCCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CH--GVEHVGGDMFDGVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~v~~~~~d~~~~~~- 246 (354)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. ++++..+|+.++.+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 34455555 557789999999999999999887 779999999 888887764 23 49999999988533
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
.||+|++..++|+ ..+....+++++.++|+| ||.+++...... ...+
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~-gG~l~~~~~~~~------------------------------~~~~ 165 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD-NGEIWVVIQTKQ------------------------------GAKS 165 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE-EEEEEEEEESTH------------------------------HHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCC-CCEEEEEECCCC------------------------------ChHH
Confidence 5999999888774 455677999999999999 999998764210 0234
Q ss_pred HHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 326 WDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 326 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+.+.+++. |..++++.....+.++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 66667776 66677777766677776654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-12 Score=110.79 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=95.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHh----hhcccCCCeEEeecCCCCC-----CC-cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVV----CVAEKCHGVEHVGGDMFDG-----VP-EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~~v~~~~~d~~~~-----~~-~~D~i~~~~ 255 (354)
..++.+|||+|||+|.++..+++..+..+++++|+ +.++ +.++...++.++.+|...+ ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45778999999999999999999887779999999 6544 4444456889988888762 22 49999986
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH----HHHHH
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW----DYVLR 331 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~----~~ll~ 331 (354)
+.+ .++...++++++++||| ||++++.-...+.+.. .+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE-KGEVVIMVKARSIDST-------------------------AEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE-EEEEEEEEEHHHHCTT-------------------------SCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC-CCEEEEEEecCCcccc-------------------------CCHHHHHHHHHHHHH
Confidence 322 23445669999999999 9999987322111000 012222 12378
Q ss_pred HcCCceeEEEEcC---CceeEEEEeC
Q 018565 332 QAGFSRYNITSIH---AVQSLIEAFP 354 (354)
Q Consensus 332 ~aGf~~~~~~~~~---~~~~~i~~~~ 354 (354)
++ |++.+..... ..+.++.++|
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 88 9999998872 2566777664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-13 Score=115.19 Aligned_cols=141 Identities=12% Similarity=0.071 Sum_probs=97.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhh----hcccCCCeEEeecCCCCC--C----CcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVC----VAEKCHGVEHVGGDMFDG--V----PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~d~~~~--~----~~~D~i~~~ 254 (354)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++ .++...+++++.+|+.++ . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5677899999999999999999986 7789999999 65443 344358899999999872 1 249999985
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
.. ..+....+++++.++||| ||.+++.-........ . ... ..+ ..+ .++|+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp-gG~l~i~~~~~~~~~~-~----------~~~--------~~~-~~~-~~~l~~~G 208 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN-GGHFVISIKANCIDST-A----------SAE--------AVF-ASE-VKKMQQEN 208 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE-EEEEEEEEEHHHHCSS-S----------CHH--------HHH-HHH-HHTTGGGT
T ss_pred CC----CccHHHHHHHHHHHHcCC-CeEEEEEEcccccccC-C----------CHH--------HHH-HHH-HHHHHHCC
Confidence 43 233456778999999999 9999883221100111 0 000 001 123 58899999
Q ss_pred CceeEEEEcCC---ceeEEEEe
Q 018565 335 FSRYNITSIHA---VQSLIEAF 353 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~~ 353 (354)
|+++++.++.. .+.++.++
T Consensus 209 f~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 209 MKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEEEECTTTSSSEEEEEEE
T ss_pred CceEEEEecCCccCCcEEEEEE
Confidence 99999777643 35555543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=119.01 Aligned_cols=154 Identities=15% Similarity=0.074 Sum_probs=104.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------------CCCeEEeecCCCC-C----C--C
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------------CHGVEHVGGDMFD-G----V--P 246 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~-~----~--~ 246 (354)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 3568999999999999999887 46779999999 888887764 1378999999987 3 3 2
Q ss_pred --cceEEEeccccccC--ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC-------C-CCC-Ccc-----hhhh-----
Q 018565 247 --EADAAIIKWVLHDW--GDDECIKILKNCKEAITKDKGKVIIVEAIIEE-------D-DGV-DNK-----FKSV----- 303 (354)
Q Consensus 247 --~~D~i~~~~~lh~~--~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~-------~-~~~-~~~-----~~~~----- 303 (354)
.||+|++..++|+. +.++...+|++++++||| ||.+++..+.... . ... ..+ +...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 190 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP-GGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPL 190 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE-EEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCS
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC-CcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCC
Confidence 59999999999986 445678999999999999 9999987653210 0 000 000 0000
Q ss_pred -hhhccHHh-hcccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 304 -RLMLDMVM-MAHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 304 -~~~~~l~~-~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.....+.. ..........+.+++.+++++.||++++....
T Consensus 191 ~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 191 FGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp SCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred ccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 00000000 00000112357899999999999999988764
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=114.19 Aligned_cols=107 Identities=11% Similarity=-0.017 Sum_probs=82.9
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--C-CCeEEeecCCCC----C-CC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--C-HGVEHVGGDMFD----G-VP 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~-~~v~~~~~d~~~----~-~~ 246 (354)
...++..+. ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ . ..+.....++.. . ..
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence 345566666 677889999999999999999987 568999999 899998875 1 122222222211 1 23
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+||+|++..++|+++.++...++++++++| | ||++++...
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P-GG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-G-SGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T-TSEEEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c-CcEEEEEec
Confidence 599999999999999888899999999999 9 999998753
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-13 Score=115.79 Aligned_cols=135 Identities=12% Similarity=0.065 Sum_probs=89.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCC-------CcceEEEec
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGV-------PEADAAIIK 254 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~-------~~~D~i~~~ 254 (354)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+++ ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 888888875 126888999988732 459999996
Q ss_pred ccccc------CChHHH------------------HHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH
Q 018565 255 WVLHD------WGDDEC------------------IKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV 310 (354)
Q Consensus 255 ~~lh~------~~~~~~------------------~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~ 310 (354)
...+. ++.+.. ..++++++++||| ||.+++++.. .
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~-----~--------------- 167 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR-GRAGVFLEVG-----H--------------- 167 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS-SSEEEEEECT-----T---------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC-CCeEEEEEEC-----C---------------
Confidence 54433 222211 6889999999999 9996665431 1
Q ss_pred hhcccCCcccCCHHHHHHHHH--HcCCceeEEEEcC-CceeEEEEe
Q 018565 311 MMAHTNKGKERSLKEWDYVLR--QAGFSRYNITSIH-AVQSLIEAF 353 (354)
Q Consensus 311 ~~~~~~~g~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~~i~~~ 353 (354)
...+++.++++ +.||..+++++.. +...++.++
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 12556777888 8899888877753 344555443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-13 Score=118.20 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=78.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC---CCC--cceEEEe-cc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD---GVP--EADAAII-KW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~---~~~--~~D~i~~-~~ 255 (354)
.+..+|||||||+|..+..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 3568999999999999999966433 48999999 888888765 4679999999865 344 4999998 55
Q ss_pred c--cccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 256 V--LHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 256 ~--lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
. .+.+.......++++++++||| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp-gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP-GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE-EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC-CeEEEEEecC
Confidence 4 3344444556889999999999 9999987654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=108.37 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=78.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC--C--CcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG--V--PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~--~--~~~D~i~~~ 254 (354)
..+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++ ++.+|..+. . +.||+|++.
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 55678999999999999999999999999999999 888887764 2378 888888663 2 459999999
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
..+|+ ..+++++.+.|+| ||++++.+.
T Consensus 102 ~~~~~------~~~l~~~~~~L~~-gG~l~~~~~ 128 (178)
T 3hm2_A 102 GGLTA------PGVFAAAWKRLPV-GGRLVANAV 128 (178)
T ss_dssp C-TTC------TTHHHHHHHTCCT-TCEEEEEEC
T ss_pred CcccH------HHHHHHHHHhcCC-CCEEEEEee
Confidence 99986 4789999999999 999988653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=129.32 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=85.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------------CCCeEEeecCCCC-CCC--cceE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------------CHGVEHVGGDMFD-GVP--EADA 250 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~--~~D~ 250 (354)
.++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+ +.+ .||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 467899999999999999999987 5679999999 888888754 2579999999988 543 5999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|++..++||++++....++++++++||| | .++|..+
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKP-G-~LIISTP 835 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHP-K-LLIVSTP 835 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCC-S-EEEEEEC
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCC-C-EEEEEec
Confidence 9999999999999888999999999999 7 6666554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.6e-13 Score=112.69 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=84.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~ 259 (354)
.+..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 46789999999999999999998654 8999999 888887765 3689999999988 554 4999999988876
Q ss_pred CC-------------hHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 260 WG-------------DDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 260 ~~-------------~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+. .+...++|+++.++||| ||.+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP-GGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE-EEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcC-CCEEEEEeCC
Confidence 54 44668999999999999 9999998754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=106.73 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=99.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhcc----cCCCeEEeecCCCCC-----CC-cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAE----KCHGVEHVGGDMFDG-----VP-EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~d~~~~-----~~-~~D~i~~~ 254 (354)
..+..+|||+|||+|.++..+++.. |..+++++|. +.+++.+. ...++++..+|+.++ .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999874 6689999999 76655543 247899999999872 22 49999975
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
.. ..+....++++++++||| ||.+++. ........ .. .......+++..+ .++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp-gG~l~~~-~~~~~~~~-~~------------------~~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR-GGYGMIA-VKSRSIDV-TK------------------EPEQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE-EEEEEEE-EEGGGTCT-TS------------------CHHHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC-CCEEEEE-EecCCCCC-CC------------------ChhhhhHHHHHHH-Hhh-
Confidence 43 223344569999999999 9999988 22211111 10 0011235677777 777
Q ss_pred CceeEEEEcCCc---eeEEEEeC
Q 018565 335 FSRYNITSIHAV---QSLIEAFP 354 (354)
Q Consensus 335 f~~~~~~~~~~~---~~~i~~~~ 354 (354)
|+.++...+... +.++.+++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred ceeeeEeccCcccCCCEEEEEEe
Confidence 999998887544 66666654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-12 Score=103.57 Aligned_cols=95 Identities=8% Similarity=-0.036 Sum_probs=75.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----C--CCeEEeecCCCC-CCC-cceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----C--HGVEHVGGDMFD-GVP-EADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~--~~v~~~~~d~~~-~~~-~~D~i~~~~~l 257 (354)
.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ . .++++ .|..+ +.+ +||+|++.+++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4678999999999999999999999999999999 999998875 2 24555 66665 333 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
|++ ++ ....+.++.+.|+| ||.++-.+
T Consensus 126 HlL-~~-~~~al~~v~~~L~p-ggvfISfp 152 (200)
T 3fzg_A 126 PVL-KQ-QDVNILDFLQLFHT-QNFVISFP 152 (200)
T ss_dssp HHH-HH-TTCCHHHHHHTCEE-EEEEEEEE
T ss_pred Hhh-hh-hHHHHHHHHHHhCC-CCEEEEeC
Confidence 998 33 34566699999999 66554444
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-12 Score=105.01 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=91.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C-C-C-cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G-V-P-EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~-~-~~D~i~~~~ 255 (354)
..++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.. + . + +||+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 346789999999999999999987 789999999 889888875 2789999877665 1 2 3 499998762
Q ss_pred -ccccC------ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 256 -VLHDW------GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 256 -~lh~~------~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
.++.- ..+....+++++.+.||| ||+++++.....+... . ......+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~~~~-~---------------------~~~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV-GGRLAIMIYYGHDGGD-M---------------------EKDAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE-EEEEEEEEC------C-H---------------------HHHHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC-CcEEEEEEeCCCCCCH-H---------------------HHHHHHHHHH
Confidence 22210 224567889999999999 9999987643222111 0 0012445556
Q ss_pred HHHHcCCceeEEEEcC
Q 018565 329 VLRQAGFSRYNITSIH 344 (354)
Q Consensus 329 ll~~aGf~~~~~~~~~ 344 (354)
.+...+|.+.+.....
T Consensus 155 ~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 155 GLDQRVFTAMLYQPLN 170 (185)
T ss_dssp HSCTTTEEEEEEEESS
T ss_pred hCCCceEEEEEehhhc
Confidence 6666788888776663
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-12 Score=113.21 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=79.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCcceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPEADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~~D~i~~~~~lh 258 (354)
..++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++ .++++++.+|..+ +..+||+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67889999999999988776667778999999999 999998875 3789999999988 54469999986542
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+ +..++++++++.||| ||+|++.+
T Consensus 199 --~--d~~~~l~el~r~LkP-GG~Lvv~~ 222 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDT-ETRIIYRT 222 (298)
T ss_dssp --S--CHHHHHHHHHHHCCT-TCEEEEEE
T ss_pred --c--CHHHHHHHHHHHcCC-CcEEEEEc
Confidence 2 345899999999999 99999866
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=114.32 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=95.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC-C----CCcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD-G----VPEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~-~----~~~~D~i 251 (354)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ . ...||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3568999999999999999998777889999999 888877654 3689999999876 2 2249999
Q ss_pred EeccccccCChHHH--HHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHH
Q 018565 252 IIKWVLHDWGDDEC--IKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYV 329 (354)
Q Consensus 252 ~~~~~lh~~~~~~~--~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~l 329 (354)
++....+..+.... .+++++++++||| ||.+++.... .. . ......++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~~~----~~-----------~-----------~~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP-DGICCNQGES----IW-----------L-----------DLELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE-EEEEEEEECC----TT-----------T-----------CHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC-CcEEEEecCC----cc-----------c-----------chHHHHHHHHH
Confidence 99777665544332 5899999999999 9998876311 01 0 01136788899
Q ss_pred HHHcCCceeEEEEc
Q 018565 330 LRQAGFSRYNITSI 343 (354)
Q Consensus 330 l~~aGf~~~~~~~~ 343 (354)
++++||..+++...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-13 Score=119.61 Aligned_cols=144 Identities=16% Similarity=0.085 Sum_probs=96.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCC----CCCC-----cceEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMF----DGVP-----EADAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~----~~~~-----~~D~i 251 (354)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|.. ++++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999888899999999 888888765 346999999853 3333 49999
Q ss_pred EeccccccCCh-------------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCc
Q 018565 252 IIKWVLHDWGD-------------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKG 318 (354)
Q Consensus 252 ~~~~~lh~~~~-------------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 318 (354)
+++-..|.... +....++.+++++||| ||.+.+++........ .......... ..+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp-gG~l~~~~~~~~~~~~---------~l~~~g~~~~-~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE-GGELEFVKRIIHDSLQ---------LKKRLRWYSC-MLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH-HTHHHHHHHHHHHHHH---------HGGGBSCEEE-EES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec-CCEEEEEHHHHHHHHh---------cccceEEEEE-CCC
Confidence 99866664331 1123567889999999 9998887643321000 0000000011 123
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 319 KERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 319 ~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
...+.+++.++++++||+.+++..+
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3445688999999999999888776
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-12 Score=110.21 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=98.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCC--CcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGV--PEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~--~~~D~i~~~~~lh~ 259 (354)
.+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ...+++..+|+.+++ .+||+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 3568999999999999999888755 9999999 888887764 112899999987743 3599999865443
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
....+++++.+.|+| ||++++.+... .+.+++.++++++||++++
T Consensus 196 ----~~~~~l~~~~~~Lkp-gG~lils~~~~------------------------------~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 ----LHAALAPRYREALVP-GGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ----HHHHHHHHHHHHEEE-EEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEE
T ss_pred ----HHHHHHHHHHHHcCC-CCEEEEEeecc------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 356899999999999 99999865421 0267888999999999999
Q ss_pred EEEcCCceeEEEEe
Q 018565 340 ITSIHAVQSLIEAF 353 (354)
Q Consensus 340 ~~~~~~~~~~i~~~ 353 (354)
+.......+ +.++
T Consensus 241 ~~~~~~W~~-l~~~ 253 (254)
T 2nxc_A 241 EAAEGEWVL-LAYG 253 (254)
T ss_dssp EEEETTEEE-EEEE
T ss_pred EeccCCeEE-EEEE
Confidence 877665444 3444
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=111.06 Aligned_cols=127 Identities=14% Similarity=0.204 Sum_probs=98.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~- 246 (354)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +++++.+++ .+++++..+|+.+.++
T Consensus 83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 34555555 667889999999999999999998 88999999999 888888765 3569999999998654
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHH
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKE 325 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e 325 (354)
.||+|++. .++. ..+++++.++|+| ||.+++...... ..++
T Consensus 161 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~-gG~l~~~~~~~~------------------------------~~~~ 202 (255)
T 3mb5_A 161 ENVDHVILD-----LPQP--ERVVEHAAKALKP-GGFFVAYTPCSN------------------------------QVMR 202 (255)
T ss_dssp CSEEEEEEC-----SSCG--GGGHHHHHHHEEE-EEEEEEEESSHH------------------------------HHHH
T ss_pred CCcCEEEEC-----CCCH--HHHHHHHHHHcCC-CCEEEEEECCHH------------------------------HHHH
Confidence 49999872 3333 3689999999999 999988653210 1456
Q ss_pred HHHHHHHcC--CceeEEEEc
Q 018565 326 WDYVLRQAG--FSRYNITSI 343 (354)
Q Consensus 326 ~~~ll~~aG--f~~~~~~~~ 343 (354)
+.+++++.| |..++++..
T Consensus 203 ~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHcCCCccccEEEEE
Confidence 677888888 888776543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-12 Score=117.49 Aligned_cols=108 Identities=19% Similarity=0.296 Sum_probs=87.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----C----CCeEEeecCCCCCCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----C----HGVEHVGGDMFDGVP 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~----~~v~~~~~d~~~~~~ 246 (354)
..+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ . .++++..+|+.++++
T Consensus 212 ~~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~ 289 (375)
T 4dcm_A 212 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 289 (375)
T ss_dssp HHHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC
T ss_pred HHHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC
Confidence 34566666 44558999999999999999999999999999999 888887765 1 258889999999655
Q ss_pred --cceEEEecccccc---CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 --EADAAIIKWVLHD---WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 --~~D~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.||+|+++..+|+ .++....++++++.+.||| ||.++++.
T Consensus 290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~iv~ 334 (375)
T 4dcm_A 290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI-NGELYIVA 334 (375)
T ss_dssp TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC-CcEEEEEE
Confidence 4999999988885 3344556899999999999 99999964
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-11 Score=103.77 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=95.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHh----hhcccCCCeEEeecCCCCC------CCcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVV----CVAEKCHGVEHVGGDMFDG------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~~v~~~~~d~~~~------~~~~D~i~~~ 254 (354)
+.++.+|||+|||+|.++..+++. .|..+++++|+ +.++ +.++...++.++.+|...+ .+.||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567899999999999999999886 46789999999 7654 3344457899999998763 1359999886
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
... + ++...+++.+++.||| ||++++.......+.. ..... ..++....|+++|
T Consensus 154 ~a~---~-~~~~il~~~~~~~Lkp-GG~lvisik~~~~d~t--------------------~~~~e-~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKV-NGDMLLVIKARSIDVT--------------------KDPKE-IYKTEVEKLENSN 207 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEE-EEEEEEEEC---------------------------CCSSS-STTHHHHHHHHTT
T ss_pred CCC---h-hHHHHHHHHHHHhCCC-CeEEEEEEccCCcccC--------------------CCHHH-HHHHHHHHHHHCC
Confidence 443 2 2333455667779999 9999987322111111 00011 1123445678899
Q ss_pred CceeEEEEcCC---ceeEEEEe
Q 018565 335 FSRYNITSIHA---VQSLIEAF 353 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~~ 353 (354)
|++.+...+.. .+.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 99999988832 47777665
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=103.42 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=102.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC---cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP---EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~---~~D~i~~~~~ 256 (354)
+++.+|+|||||+|..+..+++..|..+++++|+ +.+++.|++ .++|++..+|.+++++ +||+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3568999999999999999999999889999999 888888775 4689999999998654 4999988765
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
- .+....+|....+.|+| +|++++.-. . ..+...++|.+.||.
T Consensus 94 G----g~~i~~Il~~~~~~L~~-~~~lVlq~~------~--------------------------~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLAN-VERLILQPN------N--------------------------REDDLRIWLQDHGFQ 136 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTT-CCEEEEEES------S--------------------------CHHHHHHHHHHTTEE
T ss_pred C----hHHHHHHHHHHHHHhCC-CCEEEEECC------C--------------------------CHHHHHHHHHHCCCE
Confidence 2 34577999999999999 988776221 0 256778889999999
Q ss_pred eeEEEEc---CCceeEEEEe
Q 018565 337 RYNITSI---HAVQSLIEAF 353 (354)
Q Consensus 337 ~~~~~~~---~~~~~~i~~~ 353 (354)
+++..-+ +.++.+|.+.
T Consensus 137 i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 137 IVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 9986543 3456676654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=110.57 Aligned_cols=122 Identities=18% Similarity=0.245 Sum_probs=94.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CC-----CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GV-----PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~i~~ 253 (354)
+.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..||+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34678999999999999999999889999999999 888887764 3479999999876 42 24999998
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
..+ . ....+++.+.++|+| ||.+++.... .. . ...+++.+.+++.
T Consensus 148 ~~~----~--~~~~~l~~~~~~Lkp-gG~l~~~~g~----~~-~-----------------------~~~~~~~~~l~~~ 192 (240)
T 1xdz_A 148 RAV----A--RLSVLSELCLPLVKK-NGLFVALKAA----SA-E-----------------------EELNAGKKAITTL 192 (240)
T ss_dssp ECC----S--CHHHHHHHHGGGEEE-EEEEEEEECC-----C-H-----------------------HHHHHHHHHHHHT
T ss_pred ecc----C--CHHHHHHHHHHhcCC-CCEEEEEeCC----Cc-h-----------------------HHHHHHHHHHHHc
Confidence 763 2 246899999999999 9999875311 00 0 0135677889999
Q ss_pred CCceeEEEEc
Q 018565 334 GFSRYNITSI 343 (354)
Q Consensus 334 Gf~~~~~~~~ 343 (354)
||+..++.+.
T Consensus 193 g~~~~~~~~~ 202 (240)
T 1xdz_A 193 GGELENIHSF 202 (240)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEeEEEEE
Confidence 9998887653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=118.64 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=88.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCC-Ccce
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGV-PEAD 249 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~-~~~D 249 (354)
+.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++..+|+++.. +.||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44555564 33457999999999999999999999999999999 888887764 344778899998743 3599
Q ss_pred EEEecccccc---CChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 250 AAIIKWVLHD---WGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 250 ~i~~~~~lh~---~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+|+++.++|+ ++.+...+++++++++||| ||.++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS-GGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE-EEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC-CcEEEEEEc
Confidence 9999999986 2455678999999999999 999999764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-11 Score=103.73 Aligned_cols=115 Identities=17% Similarity=0.108 Sum_probs=90.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CC-CeEEeecCCCCC---CCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CH-GVEHVGGDMFDG---VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~~---~~~~D~i~~~~ 255 (354)
..+..+|||+|||+|.++..+++. +.+++++|+ +++++.+++ .+ +++++.+|+.+. .+.||+|++..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 556789999999999999999987 789999999 888888765 23 899999999882 34699999876
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
.+ ... +++++.++||| ||++++..... .+..++.+++++.||
T Consensus 131 ~~------~~~-~l~~~~~~Lkp-gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 131 GG------SQA-LYDRLWEWLAP-GTRIVANAVTL------------------------------ESETLLTQLHARHGG 172 (204)
T ss_dssp CC------CHH-HHHHHHHHSCT-TCEEEEEECSH------------------------------HHHHHHHHHHHHHCS
T ss_pred cc------cHH-HHHHHHHhcCC-CcEEEEEecCc------------------------------ccHHHHHHHHHhCCC
Confidence 44 123 89999999999 99998754311 025566778888898
Q ss_pred ceeEEE
Q 018565 336 SRYNIT 341 (354)
Q Consensus 336 ~~~~~~ 341 (354)
++.++.
T Consensus 173 ~i~~i~ 178 (204)
T 3njr_A 173 QLLRID 178 (204)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 877753
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=112.48 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=94.1
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc----C---CCeEEeecCCCCCCC--
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK----C---HGVEHVGGDMFDGVP-- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~~v~~~~~d~~~~~~-- 246 (354)
.++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . +++++..+|+.++++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 4444455 667789999999999999999997 78899999999 888887764 2 579999999988554
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
.||+|++ ++++. .++|+++.++||| ||.+++...... ..+++
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp-gG~l~i~~~~~~------------------------------~~~~~ 220 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMKP-GSVATFYLPNFD------------------------------QSEKT 220 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE-EEEEEEEESSHH------------------------------HHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcCC-CCEEEEEeCCHH------------------------------HHHHH
Confidence 4999998 33433 3789999999999 999998663110 13455
Q ss_pred HHHHHHcCCceeEEEE
Q 018565 327 DYVLRQAGFSRYNITS 342 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~ 342 (354)
.+.++++||+.+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6677778888877765
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=106.69 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=81.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C-C--CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G-V--PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~-~--~~~D~i~~ 253 (354)
..+..+|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ + . ..||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3467899999999999999999985 6779999999 888888765 2689999999876 2 2 24999998
Q ss_pred cccccc-------CChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 254 KWVLHD-------WGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 254 ~~~lh~-------~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
...+.. ...+...++++++.++||| ||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~-gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT-GGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE-EEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC-CCEEEEEEcc
Confidence 765511 1233456799999999999 9999987754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=104.63 Aligned_cols=128 Identities=18% Similarity=0.102 Sum_probs=95.5
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCC--CCCC--cceEEEecc
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMF--DGVP--EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~--~~~~--~~D~i~~~~ 255 (354)
..++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+. .+.+ .||+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3567899999999 999999999886 779999999 888888764 337999999963 3443 599999887
Q ss_pred ccccCChH-----------------HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCc
Q 018565 256 VLHDWGDD-----------------ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKG 318 (354)
Q Consensus 256 ~lh~~~~~-----------------~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 318 (354)
..+..++. ...++++++.+.||| ||+++++-...
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~~~---------------------------- 182 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP-GGKVALYLPDK---------------------------- 182 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE-EEEEEEEEESC----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC-CeEEEEEeccc----------------------------
Confidence 76654332 136899999999999 99998853210
Q ss_pred ccCCHHHHHHHHHHcCCceeEEEEcCC
Q 018565 319 KERSLKEWDYVLRQAGFSRYNITSIHA 345 (354)
Q Consensus 319 ~~~t~~e~~~ll~~aGf~~~~~~~~~~ 345 (354)
....+++.+++++.||.+..+....+
T Consensus 183 -~~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 183 -EKLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred -HhHHHHHHHHHHHcCCceEEEEecCC
Confidence 01256788899999998776655444
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=106.94 Aligned_cols=124 Identities=11% Similarity=0.111 Sum_probs=94.7
Q ss_pred cC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C--C--CcceEEE
Q 018565 187 FD-GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G--V--PEADAAI 252 (354)
Q Consensus 187 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~--~--~~~D~i~ 252 (354)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+ + + ..||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 9999999 888887765 3579999999988 3 3 2499999
Q ss_pred eccccccC------------------ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcc
Q 018565 253 IKWVLHDW------------------GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAH 314 (354)
Q Consensus 253 ~~~~lh~~------------------~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (354)
++-..+.. .......+++.+.++|+| ||+++++- +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~---~~---------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ-GGKANFVH---RP---------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE-EEEEEEEE---CT----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC-CcEEEEEE---cH----------------------
Confidence 96554322 112356799999999999 99999832 11
Q ss_pred cCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 315 TNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 315 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
....++..++++.||...++.++
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 02556778888999988887665
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-11 Score=101.26 Aligned_cols=129 Identities=11% Similarity=-0.012 Sum_probs=103.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCC-C--cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGV-P--EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~-~--~~D~i~~~~~ 256 (354)
+++.+|+|||||+|..+..+++..|..+++++|+ +.+++.|++ .++|++..+|.++.. + +||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3668999999999999999999988889999999 888888875 468999999999943 3 4999988765
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
. .+....+|....+.|++ +|++++.-. . ..+++.++|.+.||.
T Consensus 100 G----g~lI~~IL~~~~~~l~~-~~~lIlqp~------~--------------------------~~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQH-VKTLVLQPN------N--------------------------REDDLRKWLAANDFE 142 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTT-CCEEEEEES------S--------------------------CHHHHHHHHHHTTEE
T ss_pred c----hHHHHHHHHHHHHHhCc-CCEEEEECC------C--------------------------ChHHHHHHHHHCCCE
Confidence 4 35677899999999999 898876321 0 266788999999999
Q ss_pred eeEEEEc---CCceeEEEEe
Q 018565 337 RYNITSI---HAVQSLIEAF 353 (354)
Q Consensus 337 ~~~~~~~---~~~~~~i~~~ 353 (354)
+.+..-+ +.++.+|.+.
T Consensus 143 i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 143 IVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 9986654 3456677664
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=106.30 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=79.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---C-----Ccce
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---V-----PEAD 249 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~-----~~~D 249 (354)
..++.+|||||||+|..+..+++.+| +.+++++|+ +++++.+++ .++++++.+|+.+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34578999999999999999999988 789999999 888887764 35799999998762 1 3599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+|++... ......+++++.+.|+| ||.+++.+...+
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p-gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP-GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT-TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC-CcEEEEeCCCcC
Confidence 9988654 33456899999999999 997777655443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=108.69 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=79.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C---CcceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V---PEADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~---~~~D~i 251 (354)
..+..+|||||||+|..+..+++.+| +.+++++|+ +++++.+++ .++++++.+|+.+ + . ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34678999999999999999999988 889999999 888887765 3589999999866 2 2 259999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
++.. +......+++++.++||| ||.|++.+...
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp-GG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP-GTLIIGDNVVR 173 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT-TCEEEEECCSG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC-CeEEEEeCCCc
Confidence 9854 234556899999999999 99888766544
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=109.04 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=88.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC--CCC---cceEEEeccccccC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD--GVP---EADAAIIKWVLHDW 260 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~--~~~---~~D~i~~~~~lh~~ 260 (354)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 35689999999999999999988 579999999 889888876 6789999999965 444 499999871
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
+...+|++++++||| ||.++.. . ...+.+++.++++++||+..++
T Consensus 120 ---~~~~~l~~~~~~Lkp-gG~l~~~----~---------------------------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 120 ---GPTSVILRLPELAAP-DAHFLYV----G---------------------------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp ---CCSGGGGGHHHHEEE-EEEEEEE----E---------------------------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred ---CHHHHHHHHHHHcCC-CcEEEEe----C---------------------------CcCCHHHHHHHHHHCCCeEEEE
Confidence 223778999999999 9988810 0 0113456778888889888776
Q ss_pred EEc
Q 018565 341 TSI 343 (354)
Q Consensus 341 ~~~ 343 (354)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.9e-12 Score=110.03 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=94.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CC-----CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GV-----PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~i~~ 253 (354)
..+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 34678999999999999999999999999999999 888887764 3469999999877 33 35999998
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHc
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQA 333 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~a 333 (354)
..+- ....+++.+.+.||| ||++++.... .. . -...++...++..
T Consensus 158 ~a~~------~~~~ll~~~~~~Lkp-gG~l~~~~g~----~~-~-----------------------~e~~~~~~~l~~~ 202 (249)
T 3g89_A 158 RAVA------PLCVLSELLLPFLEV-GGAAVAMKGP----RV-E-----------------------EELAPLPPALERL 202 (249)
T ss_dssp ESSC------CHHHHHHHHGGGEEE-EEEEEEEECS----CC-H-----------------------HHHTTHHHHHHHH
T ss_pred CCcC------CHHHHHHHHHHHcCC-CeEEEEEeCC----Cc-H-----------------------HHHHHHHHHHHHc
Confidence 7642 235789999999999 9998875421 11 0 0133566778888
Q ss_pred CCceeEEEEc
Q 018565 334 GFSRYNITSI 343 (354)
Q Consensus 334 Gf~~~~~~~~ 343 (354)
||+..++.++
T Consensus 203 G~~~~~~~~~ 212 (249)
T 3g89_A 203 GGRLGEVLAL 212 (249)
T ss_dssp TEEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 9999888765
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.28 E-value=9.9e-12 Score=114.51 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=85.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC-c
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP-E 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~ 247 (354)
..+.+.+. ..+..+|||||||+|.++..+++. +..+++++|..+++..+++ .++++++.+|+.+ +.+ .
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 34444444 446789999999999999988875 5669999999556666553 3789999999988 554 4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
||+|++..+++++..+.....+.++++.||| ||.+++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP-SGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE-EEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC-CeEEEEe
Confidence 9999999999888877778889999999999 9988853
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=101.12 Aligned_cols=113 Identities=22% Similarity=0.309 Sum_probs=90.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---CCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~~~~D~i~~~~ 255 (354)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..++++..+|+.++ .+.||+|++..
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECC
Confidence 5567899999999999999999876 78999999 888887764 26899999998762 24699999988
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
++++ ...+++++.++|+| ||.+++..... .+..++.+++++.||
T Consensus 109 ~~~~-----~~~~l~~~~~~l~~-gG~l~~~~~~~------------------------------~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 109 SGGE-----LQEILRIIKDKLKP-GGRIIVTAILL------------------------------ETKFEAMECLRDLGF 152 (192)
T ss_dssp CTTC-----HHHHHHHHHHTEEE-EEEEEEEECBH------------------------------HHHHHHHHHHHHTTC
T ss_pred chHH-----HHHHHHHHHHhcCC-CcEEEEEecCc------------------------------chHHHHHHHHHHCCC
Confidence 8764 35889999999999 99998854310 024567888999999
Q ss_pred ce
Q 018565 336 SR 337 (354)
Q Consensus 336 ~~ 337 (354)
.+
T Consensus 153 ~~ 154 (192)
T 1l3i_A 153 DV 154 (192)
T ss_dssp CC
T ss_pred ce
Confidence 43
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=114.56 Aligned_cols=110 Identities=15% Similarity=0.264 Sum_probs=85.5
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc-------cc-----C---CCeEEeecCC
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA-------EK-----C---HGVEHVGGDM 241 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-----~---~~v~~~~~d~ 241 (354)
.+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| +. . .+++++.+|.
T Consensus 233 ~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 233 DVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 3444455 56788999999999999999999888778999999 7776666 32 2 6899988754
Q ss_pred C-CC------CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCC
Q 018565 242 F-DG------VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293 (354)
Q Consensus 242 ~-~~------~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~ 293 (354)
+ .+ ..+||+|+++++++. ++....|+++.+.||| ||++++.+...+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKp-GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKV-GCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCT-TCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCC-CeEEEEeeccCCcc
Confidence 4 32 235999999877742 4556789999999999 99999998776654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=101.99 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=87.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-CC---C--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-GV---P--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~~---~--~~D~i~~~~~l 257 (354)
..++.+|||||||. +.+|. +.+++.+++ ..++++..+|+.+ +. + .||+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23787 888888875 3469999999987 44 4 39999999999
Q ss_pred ccC-ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 258 HDW-GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 258 h~~-~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
|++ ++. .++|++++++||| ||++++.+........ ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp-gG~l~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP-GGCLFLKEPVETAVDN---------------------NSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE-EEEEEEEEEEESSSCS---------------------SSSSCCHHHHHHHHHHTTC-
T ss_pred hhcccCH--HHHHHHHHHHCCC-CEEEEEEccccccccc---------------------ccccCCHHHHHHHHHHCCC-
Confidence 998 554 5899999999999 9999996554322110 1123578999999999999
Q ss_pred eeEEEE
Q 018565 337 RYNITS 342 (354)
Q Consensus 337 ~~~~~~ 342 (354)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 43 443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=103.15 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=78.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~--~~D~i~~~~~ 256 (354)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999999 888887764 3689999999987 3 43 4999998755
Q ss_pred cccCChH-------HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWGDD-------ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~~~-------~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+ |+.. ....+++++.++|+| ||.+++..
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 156 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPE-NGEIHFKT 156 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCT-TCEEEEEE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCC-CcEEEEEe
Confidence 43 2211 124799999999999 99988853
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=109.04 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=96.7
Q ss_pred HHHhcCCCccC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhc-ccCCCeEEee-cCCCC----CCC--c
Q 018565 178 AIIEGCPEVFD-GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVA-EKCHGVEHVG-GDMFD----GVP--E 247 (354)
Q Consensus 178 ~~~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~v~~~~-~d~~~----~~~--~ 247 (354)
.++..+. .. .+.+|||||||+|.++..+++. +..+++++|+ +.|++.+ +...++.... .|+.. .+| .
T Consensus 75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 3444444 33 4679999999999999988886 4568999999 8888773 4345654433 34432 123 3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcc-hhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNK-FKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
||++++...+|++ ..+|.+++++|+| ||+++++- .|.... ... ........|-. -+.+..+++
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp-GG~lv~lv--kPqfe~-~~~~~~~~G~vrd~~-------~~~~~~~~v 215 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVD-GGQVVALV--KPQFEA-GREQIGKNGIVRESS-------IHEKVLETV 215 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCT-TCEEEEEE--CGGGTS-CGGGCC-CCCCCCHH-------HHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCc-CCEEEEEE--Cccccc-ChhhcCCCCccCCHH-------HHHHHHHHH
Confidence 9999998887754 4789999999999 99998862 221111 100 00000000111 123368899
Q ss_pred HHHHHHcCCceeEEEEcC
Q 018565 327 DYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~~ 344 (354)
.++++++||++..+...|
T Consensus 216 ~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 216 TAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHTTEEEEEEEECS
T ss_pred HHHHHHCCCEEEEEEECC
Confidence 999999999998887654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-11 Score=103.94 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~--~~D~i~~~~~ 256 (354)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 888887764 3579999999887 3 43 4898877543
Q ss_pred cccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 257 LHDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 257 lh~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.. |+... ...+++.+.++|+| ||.+++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp-gG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK-GGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHTT-SCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcCC-CCEEEEEe
Confidence 22 22110 25789999999999 99998854
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=106.69 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=77.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC----CC--cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG----VP--EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~----~~--~~D~i~~~~ 255 (354)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+. ++ .+|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 467999999999999999999999999999999 888877654 35799999997662 33 489998874
Q ss_pred ccccCChH-HH------HHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWGDD-EC------IKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~~~-~~------~~~L~~~~~~L~p~gG~lli~e 287 (354)
... |+.. .. ..+++.++++||| ||.+++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp-GG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQL-GGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcCC-CcEEEEEe
Confidence 433 2222 11 2589999999999 99988865
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=106.24 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=81.5
Q ss_pred CCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHhhhccc---CC-------C---------------------
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA--FPRIRGINFDL-PHVVCVAEK---CH-------G--------------------- 233 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------~--------------------- 233 (354)
.+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.++. .. +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 35689999999999999999998 77889999999 888888774 22 2
Q ss_pred ----eE-------------EeecCCCCCC-------C-cceEEEeccccccCCh-------HHHHHHHHHHHHhcCCCCc
Q 018565 234 ----VE-------------HVGGDMFDGV-------P-EADAAIIKWVLHDWGD-------DECIKILKNCKEAITKDKG 281 (354)
Q Consensus 234 ----v~-------------~~~~d~~~~~-------~-~~D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~gG 281 (354)
++ +..+|++++. + .||+|+++..++...+ +....++++++++|+| ||
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG 208 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA-HA 208 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT-TC
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC-Cc
Confidence 67 9999998843 3 5999999877665442 5667999999999999 99
Q ss_pred eEEEEee
Q 018565 282 KVIIVEA 288 (354)
Q Consensus 282 ~lli~e~ 288 (354)
.++++..
T Consensus 209 ~l~~~~~ 215 (250)
T 1o9g_A 209 VIAVTDR 215 (250)
T ss_dssp EEEEEES
T ss_pred EEEEeCc
Confidence 9998543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=109.55 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEeccccccCChH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDD 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~ 263 (354)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ... .+..+|+.+ +++ .||+|++..+++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 5689999999999999999887 568999999 888888875 222 388889887 554 49999998876666433
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 264 ECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
...+|++++++||| ||.+++....
T Consensus 131 -~~~~l~~~~~~Lkp-gG~l~~~~~~ 154 (260)
T 2avn_A 131 -KDKAFSEIRRVLVP-DGLLIATVDN 154 (260)
T ss_dssp -HHHHHHHHHHHEEE-EEEEEEEEEB
T ss_pred -HHHHHHHHHHHcCC-CeEEEEEeCC
Confidence 67899999999999 9999987653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=101.07 Aligned_cols=129 Identities=13% Similarity=0.044 Sum_probs=102.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC---cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP---EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~---~~D~i~~~~~ 256 (354)
+++.+|+|||||+|.++..+++..|..+++++|+ +.+++.|++ .++|++..+|.++.++ +||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3668999999999999999999988889999999 888888775 4689999999999543 3999988665
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
. .+....+|....+.|++ ++++++.-. . ..+.+.++|.+.||.
T Consensus 100 G----g~lI~~IL~~~~~~L~~-~~~lIlq~~------~--------------------------~~~~lr~~L~~~Gf~ 142 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAG-VTKLILQPN------I--------------------------AAWQLREWSEQNNWL 142 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTT-CCEEEEEES------S--------------------------CHHHHHHHHHHHTEE
T ss_pred c----hHHHHHHHHHHHHHhCC-CCEEEEEcC------C--------------------------ChHHHHHHHHHCCCE
Confidence 3 45678899999999998 888877421 0 256778899999999
Q ss_pred eeEEEEc---CCceeEEEEe
Q 018565 337 RYNITSI---HAVQSLIEAF 353 (354)
Q Consensus 337 ~~~~~~~---~~~~~~i~~~ 353 (354)
+++..-+ ..++-+|.+.
T Consensus 143 i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 143 ITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 9765433 4456666654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=105.54 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~ 246 (354)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+ +++
T Consensus 86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 34555566 677889999999999999999998 78899999999 888887764 2689999999988 455
Q ss_pred --cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHH
Q 018565 247 --EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLK 324 (354)
Q Consensus 247 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~ 324 (354)
.||+|++. +++. ..+++++.++|+| ||++++.+.... ...
T Consensus 164 ~~~~D~v~~~-----~~~~--~~~l~~~~~~L~~-gG~l~~~~~~~~------------------------------~~~ 205 (258)
T 2pwy_A 164 EAAYDGVALD-----LMEP--WKVLEKAALALKP-DRFLVAYLPNIT------------------------------QVL 205 (258)
T ss_dssp TTCEEEEEEE-----SSCG--GGGHHHHHHHEEE-EEEEEEEESCHH------------------------------HHH
T ss_pred CCCcCEEEEC-----CcCH--HHHHHHHHHhCCC-CCEEEEEeCCHH------------------------------HHH
Confidence 49999972 3333 3789999999999 999998663210 134
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018565 325 EWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~ 342 (354)
++.+.++++||..+++..
T Consensus 206 ~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 206 ELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHCCCceEEEEE
Confidence 556667778888776654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=104.24 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=93.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~l 257 (354)
.++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ ..+ .||+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 35789999999999999999998776 8999999 888887764 3569999999998 333 49999885431
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
...++++++.++|+| ||.+++.+........ ....+++.+.++++||+.
T Consensus 203 ------~~~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~------------------------~~~~~~i~~~~~~~G~~~ 251 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKD-GAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDV 251 (278)
T ss_dssp ------SGGGGHHHHHHHEEE-EEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEE
T ss_pred ------hHHHHHHHHHHHCCC-CeEEEEEEeecccccc------------------------ccHHHHHHHHHHHcCCee
Confidence 224789999999999 9999988765321111 123677889999999988
Q ss_pred eE
Q 018565 338 YN 339 (354)
Q Consensus 338 ~~ 339 (354)
..
T Consensus 252 ~~ 253 (278)
T 2frn_A 252 EK 253 (278)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-11 Score=102.12 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=80.3
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---Cc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---PE 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~~ 247 (354)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++..+|..+.. .+
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 3344444 567889999999999999999998 678999999 888887764 357999999998832 25
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
||+|++..++|++++ ++.+.||| ||++++.-.
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~p-gG~lv~~~~ 175 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDE-GGILVLPVG 175 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEE-EEEEEEEEC
T ss_pred ccEEEEccchhhhhH--------HHHHhccc-CcEEEEEEc
Confidence 999999999999875 46789999 999988654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=104.68 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=75.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC--CcceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV--PEADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~--~~~D~i~~~~~lh~ 259 (354)
+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.++. ..++++..+|+.+.. ..||+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 367999999999999999999999999999999 888887764 245999999998833 35999997543 2
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
....+++++.++|+| ||.+++.
T Consensus 143 ----~~~~~l~~~~~~L~~-gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGE-QGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEE-EEEEEEE
T ss_pred ----CHHHHHHHHHHhcCC-CcEEEEE
Confidence 235889999999999 9998885
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=102.78 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=81.4
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC---
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--- 246 (354)
.++..+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ ..++++..+|+..+.+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 3444444 5677899999999999999999987 6689999999 888887765 2579999999876443
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+||+|++..++|++++ ++.+.||| ||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~p-gG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKD-GGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEE-EEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCC-CcEEEEEEC
Confidence 5999999999998773 67889999 999998753
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=116.85 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=86.2
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP- 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~- 246 (354)
...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.+++ .++++++.+|+.+ +.+
T Consensus 147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 344555554 44668999999999999998877 57789999999557776654 3789999999998 655
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.||+|++..++|++..+.....+.+++++||| ||.+++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp-gG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKP-SGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE-EEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC-CCEEEE
Confidence 49999998888888777778889999999999 998885
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.4e-11 Score=104.45 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C------Ccce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V------PEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~------~~~D 249 (354)
.+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++|+++.+|..+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3568999999999999999999886 789999999 888877764 3689999999876 2 2 4599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
+|++... ......+++++.+.|+| ||.|++-+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp-GG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP-KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE-EEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC-CeEEEEECCccCC
Confidence 9988653 33456789999999999 9988887665543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=96.58 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=89.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~l 257 (354)
..+..+|||+|||+|.++..+++ +..+++++|+ +.+++.+++ .+++++..+|+.++.+ .||+|++..+
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-
Confidence 45678999999999999999988 7889999999 888887765 2689999999987443 5999999887
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
+ ....+++++++. | ||.+++..... . +..++.+.+++.||.+
T Consensus 110 ~-----~~~~~l~~~~~~--~-gG~l~~~~~~~------~------------------------~~~~~~~~l~~~g~~~ 151 (183)
T 2yxd_A 110 K-----NIEKIIEILDKK--K-INHIVANTIVL------E------------------------NAAKIINEFESRGYNV 151 (183)
T ss_dssp S-----CHHHHHHHHHHT--T-CCEEEEEESCH------H------------------------HHHHHHHHHHHTTCEE
T ss_pred c-----cHHHHHHHHhhC--C-CCEEEEEeccc------c------------------------cHHHHHHHHHHcCCeE
Confidence 2 345788888888 8 99999865311 0 1456778899999876
Q ss_pred eEE
Q 018565 338 YNI 340 (354)
Q Consensus 338 ~~~ 340 (354)
..+
T Consensus 152 ~~~ 154 (183)
T 2yxd_A 152 DAV 154 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-11 Score=105.36 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=81.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~- 246 (354)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .+++++..+|+.+.++
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34555555 667889999999999999999998 68899999999 888887764 1589999999988543
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.||+|++. .++. ..+++++.++|+| ||.+++.+
T Consensus 180 ~~~D~V~~~-----~~~~--~~~l~~~~~~L~p-gG~l~~~~ 213 (277)
T 1o54_A 180 KDVDALFLD-----VPDP--WNYIDKCWEALKG-GGRFATVC 213 (277)
T ss_dssp CSEEEEEEC-----CSCG--GGTHHHHHHHEEE-EEEEEEEE
T ss_pred CccCEEEEC-----CcCH--HHHHHHHHHHcCC-CCEEEEEe
Confidence 49999982 3333 3789999999999 99999866
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=108.32 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
.+..+|||||||+|.++..+++. +..+++++|+.++++.+++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45689999999999999999987 6669999999657777664 4569999999998 555 49999997665
Q ss_pred ccC-ChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 258 HDW-GDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 258 h~~-~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+.+ .......+++.+.++||| ||.++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~Lkp-gG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAP-DGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEE-EEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCC-CCEEcc
Confidence 443 234566899999999999 998874
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-11 Score=98.23 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=79.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--C--CcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--V--PEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~--~~~D~i~~~~~ 256 (354)
++.+|||+|||+|.++..+++. +..+++++|+ +++++.+++ .++++++.+|+.+ . . ..||+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 5689999999999999987774 5568999999 889888775 2589999999887 2 2 35999999887
Q ss_pred cccCChHHHHHHHHHHHH--hcCCCCceEEEEeee
Q 018565 257 LHDWGDDECIKILKNCKE--AITKDKGKVIIVEAI 289 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~--~L~p~gG~lli~e~~ 289 (354)
+|+ ..+...++++.+.+ +|+| ||.+++....
T Consensus 123 ~~~-~~~~~~~~l~~~~~~~~L~p-gG~l~~~~~~ 155 (189)
T 3p9n_A 123 YNV-DSADVDAILAALGTNGWTRE-GTVAVVERAT 155 (189)
T ss_dssp TTS-CHHHHHHHHHHHHHSSSCCT-TCEEEEEEET
T ss_pred CCc-chhhHHHHHHHHHhcCccCC-CeEEEEEecC
Confidence 664 34567789999999 9999 9999886544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.4e-11 Score=104.57 Aligned_cols=99 Identities=11% Similarity=0.182 Sum_probs=77.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---C-------CCeEEeecCCCCC--------CC-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---C-------HGVEHVGGDMFDG--------VP- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~-------~~v~~~~~d~~~~--------~~- 246 (354)
..+..+|||+|||+|..+..+++++|..+++++|+ +.+++.+++ . ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 888887764 1 2699999999874 22
Q ss_pred -cceEEEecccccc----------------CChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 -EADAAIIKWVLHD----------------WGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 -~~D~i~~~~~lh~----------------~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.||+|+++-..+. ........+++.+.+.||| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS-GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC-CCEEEEE
Confidence 4999999743322 1222356889999999999 9999874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.5e-11 Score=108.91 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=81.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~ 259 (354)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ...++++.+|+.+ ..+ .||+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 569999999 888887765 3358999999998 443 5999999999887
Q ss_pred ---CChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 260 ---WGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 260 ---~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
...+...++++++.+.|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp-GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP-GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc-CcEEEEEE
Confidence 3456678999999999999 99999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.6e-11 Score=101.88 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=77.4
Q ss_pred CCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCCC--C---C--cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKA----FPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFDG--V---P--EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~--~---~--~~D~i~~~~ 255 (354)
+..+|||||||+|..+..+++. .|+.+++++|+ +++++.++. .++|+++.+|..+. . . +||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999987 78899999999 888887765 57899999999873 1 2 499998765
Q ss_pred ccccCChHHHHHHHHHHHH-hcCCCCceEEEEee
Q 018565 256 VLHDWGDDECIKILKNCKE-AITKDKGKVIIVEA 288 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~-~L~p~gG~lli~e~ 288 (354)
. |. ...++|+++.+ .||| ||.+++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp-GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE-GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT-TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC-CCEEEEEeC
Confidence 4 42 34678999997 9999 999998654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-11 Score=103.89 Aligned_cols=97 Identities=13% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCC-----CcceEEEec
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGV-----PEADAAIIK 254 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~-----~~~D~i~~~ 254 (354)
.+..+|||||||+|..+..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+.. ..||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4578999999999999999999888999999999 888888765 358999999998732 359999975
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.. ......+++++.+.||| ||.+++-+...
T Consensus 150 ~~-----~~~~~~~l~~~~~~Lkp-gG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AA-----KAQSKKFFEIYTPLLKH-QGLVITDNVLY 179 (232)
T ss_dssp TT-----SSSHHHHHHHHGGGEEE-EEEEEEECTTG
T ss_pred Cc-----HHHHHHHHHHHHHhcCC-CeEEEEeeCCc
Confidence 43 23356799999999999 99887755443
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=100.75 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=80.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCCC---Ccc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDGV---PEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~---~~~ 248 (354)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+.. .+|
T Consensus 60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 34444454 5677899999999999999999985 68999999 888888775 128999999998732 249
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|+|++..++|++++ ++.+.|+| ||++++...
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~p-gG~l~~~~~ 166 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKE-GGIMILPIG 166 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEE-EEEEEEEEC
T ss_pred cEEEECCcHHHHHH--------HHHHHcCC-CcEEEEEEc
Confidence 99999999998774 57789999 999998764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-11 Score=102.29 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=74.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------CCCeEEeecCCCC--C--CC--cc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------CHGVEHVGGDMFD--G--VP--EA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~--~--~~--~~ 248 (354)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 888775531 4689999999986 3 33 48
Q ss_pred eEEEeccccccCChH-H------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 249 DAAIIKWVLHDWGDD-E------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 249 D~i~~~~~lh~~~~~-~------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
|.|++...-. |... . ...+|+++.++||| ||.+++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp-GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV-GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEE-EEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC-CCEEEEEe
Confidence 9988643321 1110 0 13699999999999 99998864
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=102.77 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=77.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CC------Ccce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GV------PEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~------~~~D 249 (354)
.+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++ .++++++.+|+.+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 4568999999999999999999764 889999999 888888765 3579999999744 12 3599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+|++....+++. ...++++.+ +.||| ||.+++.+..
T Consensus 137 ~V~~d~~~~~~~--~~~~~~~~~-~~Lkp-gG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYL--PDTLLLEKC-GLLRK-GTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHH--HHHHHHHHT-TCCCT-TCEEEESCCC
T ss_pred EEEEcCCcccch--HHHHHHHhc-cccCC-CeEEEEeCCC
Confidence 999988777643 334677777 99999 9988774443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-11 Score=106.58 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=84.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeec-CCC----CCCC--cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGG-DMF----DGVP--EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~-d~~----~~~~--~~D~i~~~~~lh~ 259 (354)
.+.+|||||||+|.++..+++. ...+++++|+ +.+++.+++ ..++..... ++. .+.+ .+|.+.+..++.+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 4579999999999999999987 3348999999 888877554 333332211 111 1111 1344444434333
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc-chhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN-KFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+ ..+|++++++||| ||++++.. .+.... .. .........+-. ....+.+++.++++++||++.
T Consensus 116 l-----~~~l~~i~rvLkp-gG~lv~~~--~p~~e~-~~~~~~~~G~~~d~~-------~~~~~~~~l~~~l~~aGf~v~ 179 (232)
T 3opn_A 116 L-----DLILPPLYEILEK-NGEVAALI--KPQFEA-GREQVGKNGIIRDPK-------VHQMTIEKVLKTATQLGFSVK 179 (232)
T ss_dssp G-----GGTHHHHHHHSCT-TCEEEEEE--CHHHHS-CHHHHC-CCCCCCHH-------HHHHHHHHHHHHHHHHTEEEE
T ss_pred H-----HHHHHHHHHhccC-CCEEEEEE--Cccccc-CHHHhCcCCeecCcc-------hhHHHHHHHHHHHHHCCCEEE
Confidence 2 4789999999999 99999853 111001 00 000000000111 122368999999999999999
Q ss_pred EEEEcC
Q 018565 339 NITSIH 344 (354)
Q Consensus 339 ~~~~~~ 344 (354)
.+...+
T Consensus 180 ~~~~~p 185 (232)
T 3opn_A 180 GLTFSP 185 (232)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 886653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=96.02 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=78.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHhhhcccCCCeEEeecCCCC-C--------CC--cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-G--------VP--EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~--------~~--~~D~i~~~ 254 (354)
..+..+|||+|||+|.++..+++.+ |+.+++++|+..++. ..++++..+|+.+ + .+ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 3466799999999999999999984 778999999944433 2679999999988 4 44 49999999
Q ss_pred cccccCChHH---------HHHHHHHHHHhcCCCCceEEEEee
Q 018565 255 WVLHDWGDDE---------CIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 ~~lh~~~~~~---------~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.++|..+... ...+++++.++|+| ||.+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP-GGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC-CcEEEEEEe
Confidence 8888765431 15889999999999 999998664
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-11 Score=104.86 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=75.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC-cc---eEEEec--
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP-EA---DAAIIK-- 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~-~~---D~i~~~-- 254 (354)
+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ .++++++.+|++++.+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999999 888888765 3469999999998543 58 999996
Q ss_pred ----------cccccCChH------HHHHHHHHHH-HhcCCCCceEEE
Q 018565 255 ----------WVLHDWGDD------ECIKILKNCK-EAITKDKGKVII 285 (354)
Q Consensus 255 ----------~~lh~~~~~------~~~~~L~~~~-~~L~p~gG~lli 285 (354)
.+. +.|.. +...+++++. +.++| ||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p-gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS-GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT-TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC-CCEEEE
Confidence 222 22221 1237899999 99999 998886
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-11 Score=103.01 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=99.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC-CC-cceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG-VP-EADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~-~~-~~D~i~~~~~lh~ 259 (354)
.++.+|||||||+|-++..+....|..+++++|+ +.+++.++. ..+.++...|+..+ .+ +||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888888765 56688999999984 33 4999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
+.++.....+ ++.++|+| +|.++-.+. ..-.+. .+ +-...-...|.+.+.+.|+...+
T Consensus 211 Le~q~kg~g~-~ll~aL~~-~~vvVSfp~-ksl~Gr-s~------------------gm~~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS-PNIVVTFPT-KSLGQR-SK------------------GMFQNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC-SEEEEEEEC-C--------------------------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhHHHH-HHHHHhCC-CCEEEeccc-hhhcCC-Cc------------------chhhHHHHHHHHHHHhcCCceee
Confidence 9888776777 89999999 654443333 111111 00 00111267888999999985544
Q ss_pred EEEcCC
Q 018565 340 ITSIHA 345 (354)
Q Consensus 340 ~~~~~~ 345 (354)
..+++
T Consensus 269 -~~~~n 273 (281)
T 3lcv_B 269 -LEIGN 273 (281)
T ss_dssp -EEETT
T ss_pred -eeecC
Confidence 44443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-11 Score=102.09 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=80.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC---
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--- 246 (354)
..+++.+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 34444444 56778999999999999999999987 89999998 888887765 2469999999855543
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+||+|++..+++++++ ++.+.|+| ||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p-gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI-GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE-EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC-CcEEEEEEe
Confidence 3999999999998764 57789999 999988653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.15 E-value=8e-11 Score=105.86 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=78.7
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CC--CcceEEEeccccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GV--PEADAAIIKWVLH 258 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~--~~~D~i~~~~~lh 258 (354)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|..+ .. ..||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 999998875 4689999999876 23 2599999865544
Q ss_pred cCChHH--HHHHHHHHHHhcCCCCceEEEEee
Q 018565 259 DWGDDE--CIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 259 ~~~~~~--~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
...... ..++++.++++|+| ||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp-gGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP-GGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC-CcEEEEEec
Confidence 322222 25899999999999 998877553
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.4e-11 Score=102.49 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=79.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C------Ccce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V------PEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~------~~~D 249 (354)
.+..+|||||||+|..+..+++.+| +.+++++|+ +++++.+++ .++++++.+|..+ + . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3567999999999999999999987 889999999 888887764 3679999999865 2 1 4699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
+|++... ......+++++.+.|+| ||.+++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p-gG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE-GGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE-EEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC-CcEEEEeCCCcC
Confidence 9996442 34456899999999999 999988766544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=105.55 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=76.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
..+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456789999999999999998886 4568999999547777664 2789999999988 555 4999998764
Q ss_pred cccC-ChHHHHHHHHHHHHhcCCCCceEE
Q 018565 257 LHDW-GDDECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 257 lh~~-~~~~~~~~L~~~~~~L~p~gG~ll 284 (354)
.+.+ .......+|+++.++||| ||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lkp-gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAK-GGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE-EEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCC-CcEEE
Confidence 3322 133456899999999999 99887
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=108.36 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=80.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~l 257 (354)
..++.+|||||||+|.++..++++. ..+++++|...+++.+++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999873 348999999777776654 4679999999988 554 59999997766
Q ss_pred ccCCh-HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 258 HDWGD-DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 258 h~~~~-~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|.... .....+++.+.+.||| ||.+++.+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp-gG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP-TGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE-EEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCCC-CeEEEEecC
Confidence 66543 3466799999999999 998877554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=105.12 Aligned_cols=101 Identities=17% Similarity=0.258 Sum_probs=81.7
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV--- 245 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~--- 245 (354)
..+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +++++.+++ ..++++..+|+.+..
T Consensus 65 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence 34444455 56778999999999999999999877 478999999 888887764 256999999998732
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.+||+|++..++|+++ +++.+.||| ||++++...
T Consensus 143 ~~fD~Iv~~~~~~~~~--------~~~~~~Lkp-gG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP--------ETWFTQLKE-GGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBSCCC--------HHHHHHEEE-EEEEEEEBC
T ss_pred CCeEEEEEcCCHHHHH--------HHHHHhcCC-CcEEEEEEC
Confidence 3599999999999877 367789999 999998753
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=100.91 Aligned_cols=97 Identities=14% Similarity=0.186 Sum_probs=80.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---C---CcceEEEe
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---V---PEADAAII 253 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~---~~~D~i~~ 253 (354)
.+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .+++++..+|+.+. . ..||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 4567999999999999999999999999999999 888887765 25799999999872 2 35999999
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
....+ ....+++++.+.|+| ||.+++.+...
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~p-gG~lv~~~~~~ 163 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRP-GGLILSDNVLF 163 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEE-EEEEEEETTTC
T ss_pred CCCHH-----HHHHHHHHHHHHcCC-CeEEEEEcCCc
Confidence 77654 345889999999999 99998865443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=99.24 Aligned_cols=95 Identities=8% Similarity=0.049 Sum_probs=76.2
Q ss_pred CceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------C-CCeEEeecCCCC---CC--CcceEEEec
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------C-HGVEHVGGDMFD---GV--PEADAAIIK 254 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~---~~--~~~D~i~~~ 254 (354)
..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ . ++++++.+|..+ .. .+||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999999 888888765 3 589999999866 23 359999886
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
... .....+++++.+.||| ||.+++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~Lkp-GG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRR-GGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEE-EEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCC-CcEEEEeCCCC
Confidence 532 3345789999999999 99888755443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=102.65 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=77.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEeccccccCCh
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGD 262 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~ 262 (354)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++ ..++.+..+|+.+ +++ +||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3568999999999999999999888889999999 888888876 5778999999887 544 49999986553
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
..++++.++||| ||++++..+.
T Consensus 159 ----~~l~~~~~~L~p-gG~l~~~~~~ 180 (269)
T 1p91_A 159 ----CKAEELARVVKP-GGWVITATPG 180 (269)
T ss_dssp ----CCHHHHHHHEEE-EEEEEEEEEC
T ss_pred ----hhHHHHHHhcCC-CcEEEEEEcC
Confidence 248899999999 9999998754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=96.54 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=74.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC--CCeEEEeechHHhhhcccCCCeEEeecCCCC-C-------------------
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP--RIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-G------------------- 244 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~------------------- 244 (354)
+.+..+|||+|||+|.++..+++++| +.+++++|+.++. ...++++..+|+.+ +
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccccccchhhH
Confidence 35678999999999999999999988 6899999994431 23679999999987 4
Q ss_pred ------CC--cceEEEeccccccCC----hHH-----HHHHHHHHHHhcCCCCceEEEE
Q 018565 245 ------VP--EADAAIIKWVLHDWG----DDE-----CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 245 ------~~--~~D~i~~~~~lh~~~----~~~-----~~~~L~~~~~~L~p~gG~lli~ 286 (354)
++ .||+|++...+|... +.. ..++++++.++||| ||.+++.
T Consensus 96 ~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~ 153 (201)
T 2plw_A 96 YKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI-GGTYIVK 153 (201)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred HHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEEE
Confidence 23 499999987776532 111 13489999999999 9998874
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-10 Score=103.06 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=75.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~l 257 (354)
.+..+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35679999999999999988886 4568999999657776654 3679999999988 555 49999988655
Q ss_pred ccCC-hHHHHHHHHHHHHhcCCCCceEEE
Q 018565 258 HDWG-DDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 258 h~~~-~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+.+. ......+++.+.++||| ||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~Lkp-gG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVE-GGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE-EEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCC-CeEEEE
Confidence 5432 33456889999999999 998874
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-10 Score=97.80 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=78.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C----------
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V---------- 245 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~---------- 245 (354)
.+..+|||||||+|..+..+++.+| ..+++++|. +.+++.+++ .+++++..+|+.+ + .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4568999999999999999999987 789999999 888887764 2469999999865 2 1
Q ss_pred -------CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 246 -------PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 246 -------~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.+||+|++... .+....+++++.+.|+| ||.+++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p-gG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP-GGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE-EEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC-CeEEEEEcccc
Confidence 45999998743 33456889999999999 99998866444
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=9e-11 Score=96.28 Aligned_cols=93 Identities=9% Similarity=-0.026 Sum_probs=72.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCC-------CcceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGV-------PEADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~-------~~~D~i~~~~ 255 (354)
+..+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ..++++..+|+.+.. ..||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998665 999999 888888775 228999999987621 1599999988
Q ss_pred ccccCChHHHHHHHHHHH--HhcCCCCceEEEEee
Q 018565 256 VLHDWGDDECIKILKNCK--EAITKDKGKVIIVEA 288 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~--~~L~p~gG~lli~e~ 288 (354)
++| -..+ ++++.+. ++|+| ||.+++...
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~-gG~~~~~~~ 148 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA-GGLYVLQHP 148 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE-EEEEEEEEE
T ss_pred CCc-hhHH---HHHHHHHhhcccCC-CcEEEEEeC
Confidence 776 2222 3444454 99999 998887554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=100.60 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=73.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------------CCCeEEeecCCCC--C--CC-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------------CHGVEHVGGDMFD--G--VP- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~v~~~~~d~~~--~--~~- 246 (354)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999999 777776532 2579999999886 2 32
Q ss_pred -cceEEEeccccccCChHHH-----------HHHHHHHHHhcCCCCceEEEE
Q 018565 247 -EADAAIIKWVLHDWGDDEC-----------IKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~-----------~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+|.|++. ++++.. ..+++++.++|+| ||.+++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp-gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE-GGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE-EEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC-CCEEEEE
Confidence 37777643 233211 4799999999999 9999885
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.9e-10 Score=101.63 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=78.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C-CC-cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G-VP-EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-~~-~~D~i~~~~ 255 (354)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.-
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45678999999999999999999875 478999999 888877764 3579999999987 3 23 599999832
Q ss_pred ------cccc-------CChHH-------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 256 ------VLHD-------WGDDE-------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 256 ------~lh~-------~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+++. |+.+. -.++|+++.+.||| ||++++....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp-GG~lv~stcs 248 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTCS 248 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 2332 22222 15899999999999 9999886643
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=99.12 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=77.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--CC-CcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--GV-PEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~~-~~~D~i~~~~~ 256 (354)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++++++.+|..+ +. ++||+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999887 889999999 888887764 3579999999865 32 12999988632
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
......+++++.+.|+| ||.+++.+...
T Consensus 136 -----~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAK-NALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEE-EEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcCC-CeEEEEECccc
Confidence 23456889999999999 99888755443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=100.32 Aligned_cols=97 Identities=13% Similarity=0.234 Sum_probs=78.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---C------Ccce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---V------PEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---~------~~~D 249 (354)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4568999999999999999999877 789999999 888887764 36899999998651 1 4699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
+|++... ......+++++.+.|+| ||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~p-gG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRP-GGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEE-EEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC-CeEEEEECCCc
Confidence 9998543 33456889999999999 99888866543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=95.26 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=74.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-------CCcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-------VPEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-------~~~~D~i~ 252 (354)
.+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3567999999999999998887 45679999999 888888765 25799999998772 23599999
Q ss_pred eccccccCChHHHHHHHHHH--HHhcCCCCceEEEEee
Q 018565 253 IKWVLHDWGDDECIKILKNC--KEAITKDKGKVIIVEA 288 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~--~~~L~p~gG~lli~e~ 288 (354)
+...+|.... ..+++.+ .++|+| ||.+++...
T Consensus 122 ~~~~~~~~~~---~~~~~~l~~~~~L~~-gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAKQEI---VSQLEKMLERQLLTN-EAVIVCETD 155 (187)
T ss_dssp ECCCGGGCCH---HHHHHHHHHTTCEEE-EEEEEEEEE
T ss_pred ECCCCCchhH---HHHHHHHHHhcccCC-CCEEEEEeC
Confidence 9877553233 3455555 788999 998887644
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.9e-10 Score=94.01 Aligned_cols=97 Identities=4% Similarity=-0.020 Sum_probs=75.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-C-CcceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-V-PEADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-~-~~~D~i~~~~ 255 (354)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ + . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35679999999999999999887 6679999999 888888765 2479999999877 2 2 3599999986
Q ss_pred ccccCChHHHHHHHHHHH--HhcCCCCceEEEEeee
Q 018565 256 VLHDWGDDECIKILKNCK--EAITKDKGKVIIVEAI 289 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~--~~L~p~gG~lli~e~~ 289 (354)
.+|. ....++++.+. ++|+| ||.+++....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~-gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE-QVMVVCETDK 140 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE-EEEEEEEEET
T ss_pred CCCc---chHHHHHHHHHhCCCcCC-CcEEEEEECC
Confidence 6542 33456677776 89999 9988886543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-10 Score=99.65 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=78.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C--------CCcc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G--------VPEA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~--------~~~~ 248 (354)
.+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++++++.+|..+ + ...|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999987 789999999 888887764 3589999999865 2 2359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
|+|++... ......+++.+.+.|+| ||.+++-+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp-GG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKV-GGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCT-TCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCC-CeEEEEecCCc
Confidence 99998643 23456889999999999 99888765443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.4e-10 Score=94.79 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=76.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCCC----
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-----PRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDGV---- 245 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~---- 245 (354)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5779999999 888877764 257999999998743
Q ss_pred ---CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 246 ---PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 246 ---~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.+||+|++...+|++ ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp-gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE-NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE-EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC-CcEEEEEEc
Confidence 249999999988864 4677889999 999988654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=97.20 Aligned_cols=97 Identities=10% Similarity=0.042 Sum_probs=75.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------C--CCeEEeecCCCC-C-C---Cc-ceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------C--HGVEHVGGDMFD-G-V---PE-ADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~v~~~~~d~~~-~-~---~~-~D~i~~ 253 (354)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ . ++++++.+|+.+ . . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 457999999999999998777643 58999999 889888775 2 689999999876 2 1 36 999999
Q ss_pred ccccccCChHHHHHHHHHH--HHhcCCCCceEEEEeeee
Q 018565 254 KWVLHDWGDDECIKILKNC--KEAITKDKGKVIIVEAII 290 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~--~~~L~p~gG~lli~e~~~ 290 (354)
...+| . ....++++.+ .++|+| ||.+++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~Lkp-gG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKP-NALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEE-EEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCC-CcEEEEEECCC
Confidence 87755 2 3455788888 567999 99988865443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=105.23 Aligned_cols=94 Identities=17% Similarity=0.105 Sum_probs=75.3
Q ss_pred CCceEEEecCC------ccHHHHHHHHH-CCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CC--------CcceEE
Q 018565 189 GIETLVDIGGN------DGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GV--------PEADAA 251 (354)
Q Consensus 189 ~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~--------~~~D~i 251 (354)
+..+||||||| +|..+..++++ +|+.+++++|+ +.+. ...++++++.+|+.+ ++ .+||+|
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 46899999999 77777777765 69999999999 6663 235789999999988 43 359999
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
++. ..|++ .+..+.|++++++||| ||.+++.|..
T Consensus 293 isd-gsH~~--~d~~~aL~el~rvLKP-GGvlVi~Dl~ 326 (419)
T 3sso_A 293 IDD-GSHIN--AHVRTSFAALFPHVRP-GGLYVIEDMW 326 (419)
T ss_dssp EEC-SCCCH--HHHHHHHHHHGGGEEE-EEEEEEECGG
T ss_pred EEC-Ccccc--hhHHHHHHHHHHhcCC-CeEEEEEecc
Confidence 876 45664 3457899999999999 9999988765
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-10 Score=97.44 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=75.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCCCC--
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP------RIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDGVP-- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~~-- 246 (354)
..+..+|||||||+|.++..+++..+ ..+++++|+ +++++.+++ ..++++..+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998654 368999999 888887764 2589999999987543
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+||+|++...+|+++ +++.+.||| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp-gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS-GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE-EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC-CCEEEEEE
Confidence 499999999998765 567889999 99998864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=100.55 Aligned_cols=102 Identities=16% Similarity=0.278 Sum_probs=77.8
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPE 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~ 247 (354)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 45555555 5677899999999999999999984 48999999 888887764 1579999999998 7778
Q ss_pred ceEEEeccccccCChHHHHHHHHH--------------H--HHhcCCCCceEE
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKN--------------C--KEAITKDKGKVI 284 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~--------------~--~~~L~p~gG~ll 284 (354)
||+|+++ ..++|..+...++|.. + +.+++| ||+++
T Consensus 94 fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP-Gg~~y 144 (285)
T 1zq9_A 94 FDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP-GDKLY 144 (285)
T ss_dssp CSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT-TCTTC
T ss_pred hcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC-CCccc
Confidence 9998884 4445666555566542 2 468999 99653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.6e-10 Score=97.02 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=71.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc--CC------CeEEe--ecCCCC-CCCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK--CH------GVEHV--GGDMFD-GVPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~v~~~--~~d~~~-~~~~~D~i~~~~ 255 (354)
+.+..+|||+|||+|.++..+++. .+++++|+..+...+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 457789999999999999998886 68999999446433322 12 68988 899987 534599999976
Q ss_pred ccccCChH-----HHHHHHHHHHHhcCCCCc--eEEEEee
Q 018565 256 VLHDWGDD-----ECIKILKNCKEAITKDKG--KVIIVEA 288 (354)
Q Consensus 256 ~lh~~~~~-----~~~~~L~~~~~~L~p~gG--~lli~e~ 288 (354)
. +..+.. ....+|+.+.++|+| || .+++-.+
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp-GG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK-NPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc-CCCeEEEEEeC
Confidence 6 433221 122489999999999 99 8877443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-09 Score=92.03 Aligned_cols=95 Identities=9% Similarity=-0.018 Sum_probs=78.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~ 259 (354)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.++. ..+.++...|... +.+ +||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 567899999999999998877 8999999999 888888775 6778899999998 444 4999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+.+.+....+ ++.+.|++ + +++|+=+
T Consensus 181 LE~q~~~~~~-~ll~aL~~-~-~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT-P-RMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC-S-EEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC-C-CEEEEcC
Confidence 8777666656 88889998 5 4555433
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=100.28 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=84.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CC-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GV- 245 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~- 245 (354)
+..++.... ..+..+|||+|||+|.++..++... |+.+++++|+ +.+++.++. .+++++..+|+.+ +.
T Consensus 192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 344445455 5677899999999999999999987 8899999999 889888775 2389999999988 43
Q ss_pred -CcceEEEeccccccCCh--H----HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 246 -PEADAAIIKWVLHDWGD--D----ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 246 -~~~D~i~~~~~lh~~~~--~----~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.||+|+++-..+.... . ....+++.+.+.|+| ||+++++.
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp-gG~l~i~t 317 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP-GGRVALLT 317 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT-TCEEEEEE
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 35899999655432111 1 136889999999999 99999854
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-10 Score=98.40 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=81.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-C
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD-G 244 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~ 244 (354)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .+++++..+|+.+ +
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34555556 667889999999999999999985 57889999999 888877654 2589999999987 4
Q ss_pred CC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 245 VP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 245 ~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
++ .||+|++. .++. .++++++.++|+| ||.+++...
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~p-gG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVA-GGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEE-EEEEEEEES
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCC-CCEEEEEeC
Confidence 43 49999982 2322 2679999999999 999998764
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.1e-10 Score=97.72 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=71.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc--CC------CeEEe--ecCCCC-CCCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK--CH------GVEHV--GGDMFD-GVPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~v~~~--~~d~~~-~~~~~D~i~~~~ 255 (354)
+.++.+|||+|||+|.++..++++ .+++++|+..+...+++ .. +++++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 457789999999999999999887 58999999446443322 11 78999 899987 534599999976
Q ss_pred ccccCChH-----HHHHHHHHHHHhcCCCCc--eEEEEee
Q 018565 256 VLHDWGDD-----ECIKILKNCKEAITKDKG--KVIIVEA 288 (354)
Q Consensus 256 ~lh~~~~~-----~~~~~L~~~~~~L~p~gG--~lli~e~ 288 (354)
. +..+.. ....+|+.+.++||| || .+++..+
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp-GG~~~~v~~~~ 194 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY-NQGCGFCVKVL 194 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH-STTCEEEEEES
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc-CCCcEEEEEeC
Confidence 6 433221 122479999999999 99 8877443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=91.10 Aligned_cols=102 Identities=16% Similarity=0.260 Sum_probs=74.1
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCC------------
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGV------------ 245 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~------------ 245 (354)
++.+.+. .+.++.+|||+|||+|.++..++++ ..+++++|+.++ ....+++++.+|+.+..
T Consensus 15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 3444443 1457789999999999999999987 778999999432 12468999999998731
Q ss_pred --CcceEEEecccccc---CC------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 246 --PEADAAIIKWVLHD---WG------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 246 --~~~D~i~~~~~lh~---~~------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.||+|++...... +. .+....+++.+.++||| ||.+++..
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp-GG~lv~k~ 139 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN-GGNVLLKQ 139 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC-CCEEEEEE
Confidence 36999998543211 11 12245789999999999 99988644
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-09 Score=93.02 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=79.1
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCC-C--
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGV-P-- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~-~-- 246 (354)
.++..++ ..+..+|||+|||+|.++..+++. ..+++++|+ +++++.+++ .+++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 3444445 567789999999999999999998 679999999 888887764 268999999998854 3
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.||+|++. .++. ..+++++.++|+| ||++++...
T Consensus 158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~-gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFVD-----VREP--WHYLEKVHKSLME-GAPVGFLLP 191 (248)
T ss_dssp CBSEEEEC-----SSCG--GGGHHHHHHHBCT-TCEEEEEES
T ss_pred cccEEEEC-----CcCH--HHHHHHHHHHcCC-CCEEEEEeC
Confidence 49999973 2322 3679999999999 999998764
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-11 Score=105.44 Aligned_cols=135 Identities=13% Similarity=0.115 Sum_probs=95.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----C--CCeEEeecCCCC-CC-CcceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----C--HGVEHVGGDMFD-GV-PEADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~--~~v~~~~~d~~~-~~-~~~D~i~~~~~lh 258 (354)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.++. . ++++++.+|+.+ +. ..||+|++..++|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 5689999999999999999987 479999999 888888765 2 589999999988 42 3599999999998
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+.++.. ..+.+++++|+| ||.+++ +........ ... .-.+....+++..++...|.-.+
T Consensus 156 ~~~~~~--~~~~~~~~~L~p-gG~~i~-~~~~~~~~~-------------~~~----~lp~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP-DGFEIF-RLSKKITNN-------------IVY----FLPRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS-CHHHHH-HHHHHHCSC-------------EEE----EEETTBCHHHHHHTTCTTCCEEE
T ss_pred Ccchhh--hHHHHHHhhcCC-cceeHH-HHHHhhCCc-------------eEE----ECCCCCCHHHHHHHhccCCCEEE
Confidence 866543 367789999999 998544 221111000 000 00123356777777877776666
Q ss_pred EEEEcCCc
Q 018565 339 NITSIHAV 346 (354)
Q Consensus 339 ~~~~~~~~ 346 (354)
+.....+.
T Consensus 215 ~~~~~~~~ 222 (241)
T 3gdh_A 215 EQNFLNNK 222 (241)
T ss_dssp EEEEETTE
T ss_pred EehhhcCc
Confidence 55555443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=92.99 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=75.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCCC---CcceE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDGV---PEADA 250 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~---~~~D~ 250 (354)
..+..+|||||||+|..+..+++.. |..+++++|+ +.+++.+++ ..+++++.+|..... .+||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4467899999999999999999874 6679999999 888877653 248999999987632 25999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|++...++++. +++.+.||| ||.+++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp-gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP-GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE-EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC-CcEEEEEEe
Confidence 99998887654 577889999 999988653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.5e-10 Score=96.65 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=77.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C--------CCcc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G--------VPEA 248 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~--------~~~~ 248 (354)
.+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .++++++.+|..+ + ...|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3567999999999999999999987 789999999 888887764 3579999999875 2 2359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
|+|++.. +......+++++.+.|+| ||.+++-+..
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~p-GG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVKV-GGIVAYDNTL 183 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEE-EEEEEEECTT
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcCC-CeEEEEecCC
Confidence 9999753 234567899999999999 9887765443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.9e-10 Score=99.10 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=77.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCCC----CCcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFDG----VPEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~----~~~~D~i~ 252 (354)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. ...||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3568999999999999999998878889999999 888887764 36899999998762 23599999
Q ss_pred eccccccCChHHH--HHHHHHHHHhcCCCCceEEEE
Q 018565 253 IKWVLHDWGDDEC--IKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 253 ~~~~lh~~~~~~~--~~~L~~~~~~L~p~gG~lli~ 286 (354)
+....+..+.... .+++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 8654443223222 5899999999999 9988875
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-10 Score=97.49 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=78.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C---C----CcceE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G---V----PEADA 250 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~---~----~~~D~ 250 (354)
+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++ .+++++..+|..+ + . ..||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999887 789999999 888887764 3579999999754 1 1 45999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 251 AIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
|++... ......+++++.+.|+| ||.+++.+...+
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~~ 186 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRR-GGLMVIDNVLWH 186 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEE-EEEEEEECTTGG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCC-CeEEEEeCCCcC
Confidence 997643 34456889999999999 998888665443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=98.69 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=69.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHhhhcc--c--CCCeEEeec-CCCC-CCCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-----PHVVCVAE--K--CHGVEHVGG-DMFD-GVPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~--~~~v~~~~~-d~~~-~~~~~D~i~~~~ 255 (354)
+.++.+|||||||+|.++..++++ .+++++|+ +..++... . .++++++.+ |+.+ +..+||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456789999999999999999887 47899997 43333221 1 267999999 9887 555699999976
Q ss_pred ccc---cCChHH-HHHHHHHHHHhcCCCCceEEE
Q 018565 256 VLH---DWGDDE-CIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 256 ~lh---~~~~~~-~~~~L~~~~~~L~p~gG~lli 285 (354)
.++ ...+.. ...+|+.++++||| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp-GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN-NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT-TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 553 212221 22689999999999 997776
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.98 E-value=9.6e-10 Score=93.14 Aligned_cols=96 Identities=5% Similarity=0.002 Sum_probs=74.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--CC--CcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--GV--PEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~~--~~~D~i~~~~~l 257 (354)
+..+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +. ..||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 457999999999999998887643 48999999 899888875 2589999999876 32 249999998775
Q ss_pred ccCChHHHHHHHHHHHH--hcCCCCceEEEEeee
Q 018565 258 HDWGDDECIKILKNCKE--AITKDKGKVIIVEAI 289 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~--~L~p~gG~lli~e~~ 289 (354)
| . .....+++.+.+ +|+| ||.+++....
T Consensus 133 ~-~--~~~~~~l~~l~~~~~L~p-gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-R--GLLEETINLLEDNGWLAD-EALIYVESEV 162 (202)
T ss_dssp S-T--TTHHHHHHHHHHTTCEEE-EEEEEEEEEG
T ss_pred C-C--CcHHHHHHHHHhcCccCC-CcEEEEEECC
Confidence 5 2 234467777766 4999 9988876543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-09 Score=98.05 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=72.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~ 259 (354)
++.+|||||||+|.++...++.. ..+++++|..+++..|++ .++|+++.+|+.+ +.| .+|+|++..+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 45799999999999988777653 347999998657666654 5789999999988 666 4999988544333
Q ss_pred CC-hHHHHHHHHHHHHhcCCCCceEEE
Q 018565 260 WG-DDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 260 ~~-~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+. ......++....+.||| ||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp-~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE-GGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE-EEEEES
T ss_pred ccccchhhhHHHHHHhhCCC-CceECC
Confidence 32 33566788888899999 887764
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-10 Score=99.06 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=76.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC--C--CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD--G--VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~--~~~~D~i~~ 253 (354)
++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ + ...||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 468999999999999999998767789999999 888887764 3689999999876 2 235999999
Q ss_pred ccccccCChHH--HHHHHHHHHHhcCCCCceEEEE
Q 018565 254 KWVLHDWGDDE--CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 254 ~~~lh~~~~~~--~~~~L~~~~~~L~p~gG~lli~ 286 (354)
....+..+... ..+++++++++|+| ||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~p-gG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKE-DGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEE-EEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 65443322111 24789999999999 9988774
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=90.68 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=72.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHhhhcccCCCeEEe-ecCCCC-C--------CC-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR---------IRGINFDLPHVVCVAEKCHGVEHV-GGDMFD-G--------VP- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~-~--------~~- 246 (354)
+.+..+|||+|||+|.++..++++++. .+++++|+.++. ...++++. .+|+.+ + .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 356789999999999999999999765 789999994421 13568889 899876 2 22
Q ss_pred -cceEEEeccccccC----ChHH-----HHHHHHHHHHhcCCCCceEEEEee
Q 018565 247 -EADAAIIKWVLHDW----GDDE-----CIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 247 -~~D~i~~~~~lh~~----~~~~-----~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.||+|++...+|.. .+.. ...+++++.++||| ||++++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP-GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC-CCEEEEEec
Confidence 59999986544421 1111 14789999999999 999988654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-10 Score=99.84 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=78.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCC--C--CCcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFD--G--VPEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~--~--~~~~D~i~ 252 (354)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ + ...||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 458999999999999999999878889999999 888877653 3689999999876 2 23599999
Q ss_pred ecccccc---CChHH--HHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 IKWVLHD---WGDDE--CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 ~~~~lh~---~~~~~--~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+....|. -+... ..+++++++++|+| ||.+++..
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~ 195 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNP-GGVMGMQT 195 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCC-CcEEEEEc
Confidence 9766553 11111 36889999999999 99988864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.9e-10 Score=98.61 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------CCCeEEeecCCCCC---CCcc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGGDMFDG---VPEA 248 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~d~~~~---~~~~ 248 (354)
.+.+|||||||+|..+..+++. |..+++++|+ +.+++.+++ .++++++.+|..+. ...|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4689999999999999999998 8889999999 888876652 36799999997652 2359
Q ss_pred eEEEeccccccCChHH--HHHHHHHHHHhcCCCCceEEEE
Q 018565 249 DAAIIKWVLHDWGDDE--CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~--~~~~L~~~~~~L~p~gG~lli~ 286 (354)
|+|++....+.-+... ..+++++++++|+| ||.+++.
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p-gG~lv~~ 192 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNN-PGIYVTQ 192 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEE-EEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 9999866543222222 26789999999999 9988775
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=97.17 Aligned_cols=99 Identities=20% Similarity=0.137 Sum_probs=81.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC-C-CcceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG-V-PEADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~-~-~~~D~i~~~~~l 257 (354)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+. . ..||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 888888765 35789999999874 3 249999987543
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
...++++.+.+.|+| ||.+++.+....+
T Consensus 197 ------~~~~~l~~~~~~Lkp-gG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD-RGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEEE-EEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcCC-CCEEEEEEcCccc
Confidence 234678999999999 9999988776543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.2e-10 Score=100.39 Aligned_cols=98 Identities=21% Similarity=0.158 Sum_probs=76.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CC--CcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GV--PEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~--~~~D~i 251 (354)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ .. ..||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 3568999999999999999999878889999999 888887764 3689999999865 22 359999
Q ss_pred EeccccccCChHH--HHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWVLHDWGDDE--CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~lh~~~~~~--~~~~L~~~~~~L~p~gG~lli~ 286 (354)
++....+..+.+. ..+++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP-GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC-CcEEEEe
Confidence 9854422111111 36899999999999 9988874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=99.74 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=75.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCCC----CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFDG----VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~----~~~~D~i~~ 253 (354)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. ...||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 458999999999999999998778889999999 888887654 35899999998762 235999998
Q ss_pred ccccccCChHHH--HHHHHHHHHhcCCCCceEEEE
Q 018565 254 KWVLHDWGDDEC--IKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 254 ~~~lh~~~~~~~--~~~L~~~~~~L~p~gG~lli~ 286 (354)
...-+.-+.... .+++++++++|+| ||.+++.
T Consensus 196 d~~~p~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 229 (321)
T 2pt6_A 196 DSSDPIGPAETLFNQNFYEKIYNALKP-NGYCVAQ 229 (321)
T ss_dssp ECCCSSSGGGGGSSHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCcCCCCcchhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 643221112221 6899999999999 9988774
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.95 E-value=8.1e-10 Score=99.93 Aligned_cols=98 Identities=20% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCCC----CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFDG----VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~----~~~~D~i~~ 253 (354)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. ...||+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 458999999999999999999878889999999 888887764 35899999998762 235999998
Q ss_pred ccccccCChHHH--HHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVLHDWGDDEC--IKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~lh~~~~~~~--~~~L~~~~~~L~p~gG~lli~e 287 (354)
...-+.-+.... .+++++++++|+| ||.+++..
T Consensus 188 d~~~~~~~~~~l~t~~~l~~~~~~Lkp-gG~lv~~~ 222 (314)
T 2b2c_A 188 DSSDPVGPAESLFGQSYYELLRDALKE-DGILSSQG 222 (314)
T ss_dssp CCC-------------HHHHHHHHEEE-EEEEEEEC
T ss_pred cCCCCCCcchhhhHHHHHHHHHhhcCC-CeEEEEEC
Confidence 554332122221 6899999999999 99888753
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-10 Score=110.79 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=81.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC---CCC--cceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD---GVP--EADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~~--~~D~i~~~~~ 256 (354)
.+.+|||||||.|.++..|++. +.+++|+|. +.+++.|+. ..+|+|..++..+ ..+ .||+|++..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4679999999999999999997 779999999 888887764 2469999998876 232 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
+||++++....-+..+.+.|++ +|+.++...+..+
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~-~~~~~~~~~~~~e 178 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLAD-VTQAVILELAVKE 178 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH-HSSEEEEECCCTT
T ss_pred hhcCCCHHHHHHHHHHHHHhcc-ccceeeEEecccc
Confidence 9999887655556677788888 8888887765443
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-10 Score=99.87 Aligned_cols=99 Identities=19% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC--C--CCcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD--G--VPEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~--~~~~D~i~ 252 (354)
.+..+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ + ...||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 3568999999999999999999878889999999 888877653 4689999999865 2 23599999
Q ss_pred eccccccCChH--HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 IKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 ~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE-DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE-EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC-CeEEEEec
Confidence 86544322211 125789999999999 99887754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.1e-09 Score=92.43 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=71.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHhhhccc-C---------------CCeEEeecCCCCC-----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL--PHVVCVAEK-C---------------HGVEHVGGDMFDG----- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~-~---------------~~v~~~~~d~~~~----- 244 (354)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++. . +++++...|..+.
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888753 348999998 577766543 1 3688886655431
Q ss_pred ----CCcceEEEeccccccCChHHHHHHHHHHHHhcC---C-CCceEEEE
Q 018565 245 ----VPEADAAIIKWVLHDWGDDECIKILKNCKEAIT---K-DKGKVIIV 286 (354)
Q Consensus 245 ----~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~---p-~gG~lli~ 286 (354)
...||+|++..++|+. +....+++.+.++|+ | +||.++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 1359999999999884 446689999999999 6 26776663
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=98.11 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=77.7
Q ss_pred HHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-----------------CCCeEEeec
Q 018565 179 IIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-----------------CHGVEHVGG 239 (354)
Q Consensus 179 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~v~~~~~ 239 (354)
++..++ ..++.+|||+|||+|.++..+++. .|+.+++++|+ +.+++.+++ ..++++..+
T Consensus 97 ~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 97 ILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 444444 567789999999999999999998 58789999999 888877764 158999999
Q ss_pred CCCCC---CC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 240 DMFDG---VP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 240 d~~~~---~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|+.+. ++ .||+|++... ... .+++++.++|+| ||.+++...
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~~-----~~~--~~l~~~~~~Lkp-gG~lv~~~~ 220 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDML-----NPH--VTLPVFYPHLKH-GGVCAVYVV 220 (336)
T ss_dssp CTTCCC-------EEEEEECSS-----STT--TTHHHHGGGEEE-EEEEEEEES
T ss_pred ChHHcccccCCCCeeEEEECCC-----CHH--HHHHHHHHhcCC-CcEEEEEeC
Confidence 99873 33 4999998432 111 378999999999 999998764
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-09 Score=98.96 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=80.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC--cceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP--EADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~--~~D~i~~ 253 (354)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 456789999999999999999999877 79999999 777776654 3579999999987 3 43 4999996
Q ss_pred ------ccccccCChH-------HH-------HHHHHHHHHhcCCCCceEEEEeeee
Q 018565 254 ------KWVLHDWGDD-------EC-------IKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 254 ------~~~lh~~~~~-------~~-------~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
..+++..++. +. .++|+++.+.||| ||++++++...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP-GGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE-EEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEeCCC
Confidence 3344443332 11 5789999999999 99999877544
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=97.75 Aligned_cols=97 Identities=24% Similarity=0.216 Sum_probs=73.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC--C--CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD--G--VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~--~--~~~~D~i~~ 253 (354)
.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ + ...||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999999 888877653 3689999999765 2 234999998
Q ss_pred ccccccCChH---HHHHHHHHHHHhcCCCCceEEEE
Q 018565 254 KWVLHDWGDD---ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 254 ~~~lh~~~~~---~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
...-+..... ...+++++++++|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp-gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE-DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE-EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC-CcEEEEE
Confidence 5332201111 125889999999999 9988874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-09 Score=93.48 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=73.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCCCCCcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFDGVPEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~~~~~D~i~~~~~l 257 (354)
.+.+|||||||+|..+..+++. + .+++++|+ +.+++.+++ .++++++.+|..+-...||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~-- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ-- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS--
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC--
Confidence 4579999999999999999988 7 89999999 899988864 3589999999887335699999862
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+++. .+++.+++.|+| ||.+++.
T Consensus 148 ---~dp~--~~~~~~~~~L~p-gG~lv~~ 170 (262)
T 2cmg_A 148 ---EPDI--HRIDGLKRMLKE-DGVFISV 170 (262)
T ss_dssp ---CCCH--HHHHHHHTTEEE-EEEEEEE
T ss_pred ---CChH--HHHHHHHHhcCC-CcEEEEE
Confidence 2332 489999999999 9988874
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.4e-09 Score=88.14 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=67.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCCCCCcceEEEeccccccCChHHH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDEC 265 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~ 265 (354)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+-...||+|++...+|++++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35679999999999999999886 5557999999 889888876 33899999999883256999999999998876544
Q ss_pred HHHHHHHHHhc
Q 018565 266 IKILKNCKEAI 276 (354)
Q Consensus 266 ~~~L~~~~~~L 276 (354)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57788887775
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-09 Score=94.24 Aligned_cols=103 Identities=8% Similarity=0.043 Sum_probs=78.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C------CCcceEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G------VPEADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~------~~~~D~i 251 (354)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999998876 79999999 787777654 3489999999876 3 2359999
Q ss_pred Eecccccc---------CCh-------HHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 252 IIKWVLHD---------WGD-------DECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 252 ~~~~~lh~---------~~~-------~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
++.-.... |.. +.-.++|+++.+.||| ||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK-DGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE-EEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEECCC
Confidence 98632211 111 1236899999999999 99998876543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-08 Score=88.69 Aligned_cols=120 Identities=11% Similarity=0.078 Sum_probs=90.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C-CCcceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G-VPEADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~-~~~~D~i~~~~~ 256 (354)
..++.+|||+|||+|.++..+++. ...+++++|+ |..++.+++ .+++++..+|..+ . ...||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 346789999999999999999886 4568999999 888887764 5789999999988 3 234999987543
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
. ....+|..+.++||| ||.|.+.+.+..+... ....+.++++.++.|++
T Consensus 202 ~------~~~~~l~~a~~~lk~-gG~ih~~~~~~e~~~~------------------------~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD-GAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE-EEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC-CCEEEEEeeecccccc------------------------hhHHHHHHHHHHHcCCc
Confidence 2 123678888999999 9988877765432211 11356677888899987
Q ss_pred ee
Q 018565 337 RY 338 (354)
Q Consensus 337 ~~ 338 (354)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.6e-09 Score=93.93 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=71.9
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCCcc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVPEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~~ 248 (354)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 34444444 556789999999999999999986 468999999 888887764 2689999999988 67789
Q ss_pred eEEEeccccccCChHHHHHHH---------------HHHHHhcCCCCc
Q 018565 249 DAAIIKWVLHDWGDDECIKIL---------------KNCKEAITKDKG 281 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L---------------~~~~~~L~p~gG 281 (354)
|+|+++ ..+++..+...+++ ..+.+.++| +|
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~-~G 153 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN-VG 153 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC-TT
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC-CC
Confidence 999875 44556666666666 346678887 66
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-09 Score=95.36 Aligned_cols=98 Identities=12% Similarity=0.147 Sum_probs=79.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCC--CcceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPR-----IRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGV--PEADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~--~~~D~i~~~~ 255 (354)
+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++.+..+|.+.+. ..||+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 5689999999999999999987764 68999999 888887764 347899999998843 3599999998
Q ss_pred ccccCChHHH----------------HHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWGDDEC----------------IKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~~~~~----------------~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+++++.++. ..+++++.+.|+| ||+++++.
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~-gG~~~~v~ 256 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP-GGYLFFLV 256 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC-CCEEEEEE
Confidence 8776654432 2689999999999 99888865
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=95.29 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=74.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-C-CcceEEEecccccc----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-V-PEADAAIIKWVLHD---- 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-~-~~~D~i~~~~~lh~---- 259 (354)
....+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .++++..+|+++. . +.||+|+++-....
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~ 114 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEA 114 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCT
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCcccc
Confidence 345699999999999999999876 6789999999 7777776 6799999999883 2 35999999533221
Q ss_pred ------CChHHH-----------------HHHHHHHHHhcCCCCceEEEEee
Q 018565 260 ------WGDDEC-----------------IKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 260 ------~~~~~~-----------------~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.+++.. ..+++++.+.|+| ||+++++-+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~-~G~~~~i~p 165 (421)
T 2ih2_A 115 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP-GGVLVFVVP 165 (421)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC-CCEEEEEEC
Confidence 222221 2678999999999 999888653
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.2e-08 Score=82.45 Aligned_cols=88 Identities=14% Similarity=-0.017 Sum_probs=70.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCCcceEEEeccccccCC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVPEADAAIIKWVLHDWG 261 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~ 261 (354)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++. ..+++++.+|+.+-.+.||+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 456899999999999999998873 347999999 888887765 2279999999988324699999998888876
Q ss_pred hHHHHHHHHHHHHhc
Q 018565 262 DDECIKILKNCKEAI 276 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L 276 (354)
......+++.+.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567888888876
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-08 Score=87.82 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=74.2
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc-c
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-A 248 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-~ 248 (354)
.+.+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 355666665 5677899999999999999999985 68999999 888887765 3689999999998 6653 3
Q ss_pred eEEEeccccccCChHHHHHHH--------------HHHHHhcCCCCceE
Q 018565 249 DAAIIKWVLHDWGDDECIKIL--------------KNCKEAITKDKGKV 283 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~p~gG~l 283 (354)
+..++++..++++.+...+++ ..+.+.++| +|++
T Consensus 95 ~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~-~G~l 142 (244)
T 1qam_A 95 SYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNT-KRSL 142 (244)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCT-TSHH
T ss_pred CeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcC-Ccch
Confidence 445556665555544444444 235666776 6644
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-08 Score=91.78 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=73.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CC-CeEEeecCCCCC-------CCcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CH-GVEHVGGDMFDG-------VPEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~v~~~~~d~~~~-------~~~~D~i~ 252 (354)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999864 49999999 888887765 22 599999999872 23599999
Q ss_pred eccccccC--------ChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 253 IKWVLHDW--------GDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 253 ~~~~lh~~--------~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+.-..... ..+...++++++.++|+| ||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp-gG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP-KALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT-TCCEEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc-CcEEEEEEC
Confidence 84321110 023456899999999999 998776553
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-09 Score=90.91 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=77.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC---c
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP---E 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~---~ 247 (354)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++ +
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 45555555 5677899999999999999999984 78999999 888888775 3589999999998 554 2
Q ss_pred ceEEEeccccccCChHHHHHHH--------------HHHHHhcCCCCceEEEEe
Q 018565 248 ADAAIIKWVLHDWGDDECIKIL--------------KNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L--------------~~~~~~L~p~gG~lli~e 287 (354)
| .++++.-++.+......++ +.+.+.|+| ||++.+..
T Consensus 95 f--~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~-~G~l~v~~ 145 (245)
T 1yub_A 95 Y--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI-HRTLGLLL 145 (245)
T ss_dssp E--EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG-GGSHHHHT
T ss_pred c--EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC-CCchhhhh
Confidence 5 3445554444444444444 558899999 99877643
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-08 Score=88.32 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=81.1
Q ss_pred cCCCceEEEecCCc------cHHHHHHHHHCC-CCeEEEeechHHhhhcccCCCeEE-eecCCCC-CCC-cceEEEeccc
Q 018565 187 FDGIETLVDIGGND------GTTLRTLTKAFP-RIRGINFDLPHVVCVAEKCHGVEH-VGGDMFD-GVP-EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~------G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~d~~~-~~~-~~D~i~~~~~ 256 (354)
+.++.+|||+|||+ |. ..+++..| +.+++++|+.+.+ .++++ +.+|+.+ +++ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 56778999999955 66 44566666 6899999993331 46889 9999988 444 5999998643
Q ss_pred ccc-----CC----hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 257 LHD-----WG----DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 257 lh~-----~~----~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
.+. .+ ......+++.++++||| ||++++...... ...++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp-GG~~v~~~~~~~------------------------------~~~~l~ 181 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL-GGSIAVKITEHS------------------------------WNADLY 181 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE-EEEEEEEECSSS------------------------------CCHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC-CcEEEEEEeccC------------------------------CHHHHH
Confidence 221 00 12345899999999999 999988532110 123667
Q ss_pred HHHHHcCCceeEEE
Q 018565 328 YVLRQAGFSRYNIT 341 (354)
Q Consensus 328 ~ll~~aGf~~~~~~ 341 (354)
+++++.||..+++.
T Consensus 182 ~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 182 KLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHHHcCCcEEEEE
Confidence 77888888777665
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.7e-08 Score=91.39 Aligned_cols=120 Identities=18% Similarity=0.105 Sum_probs=89.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
.+..+|||+|||+|.++..++...+..+++++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|+++-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 3568999999999999999999887778999999 899888875 2589999999998 543 5999999655
Q ss_pred cccCC------hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHH
Q 018565 257 LHDWG------DDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVL 330 (354)
Q Consensus 257 lh~~~------~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll 330 (354)
.+... .+...++++.+.+.| + |+.+++.. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~-g~~~~i~~----------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E-KRGVFITT----------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E-EEEEEEES----------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C-CeEEEEEC----------------------------------CHHHHHHHH
Confidence 44321 112367888888888 5 44443311 244556778
Q ss_pred HHcCCceeEEEEc
Q 018565 331 RQAGFSRYNITSI 343 (354)
Q Consensus 331 ~~aGf~~~~~~~~ 343 (354)
.+.||+..+..++
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 8899999887776
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=94.70 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=79.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C--CC--cceEEEec-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G--VP--EADAAIIK- 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~--~~--~~D~i~~~- 254 (354)
..++.+|||+|||+|..+..+++..++.+++++|+ +..+..+++ ..+++++.+|+.+ + ++ .||+|++.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45678999999999999999999998889999999 777776654 3468899999987 3 32 49999962
Q ss_pred -----cccccCChH-------HH-------HHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 -----WVLHDWGDD-------EC-------IKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 -----~~lh~~~~~-------~~-------~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.+++..++. +. .++|+++.+.||| ||++++++...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp-GG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT-GGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE-EEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEECCC
Confidence 334433321 11 4889999999999 99999877544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=95.53 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=76.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C--CC-cceEEEec-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G--VP-EADAAIIK- 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~--~~-~~D~i~~~- 254 (354)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .-.+.++.+|..+ + .+ .||+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 456789999999999999999998765 68999999 888877764 2228999999876 3 23 49999962
Q ss_pred -----ccc-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEee
Q 018565 255 -----WVL-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 -----~~l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.++ ..|..+.. .++|+++.+.||| ||+|+.+.-
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvysTC 230 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP-GGVLVYSTC 230 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE-EEEEEEEES
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEec
Confidence 112 22333222 6799999999999 999988654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.7e-08 Score=91.50 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=77.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC-cceEEEec--
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP-EADAAIIK-- 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~-~~D~i~~~-- 254 (354)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999999 888877664 3579999999987 3 33 49999982
Q ss_pred ----ccc-------ccCChHH-------HHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 ----WVL-------HDWGDDE-------CIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ----~~l-------h~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
.++ ++|+.+. -.++|+++.++||| ||+|+++....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP-GGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEecccC
Confidence 122 2233322 24789999999999 99998876543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-08 Score=93.07 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=76.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC-cceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP-EADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~-~~D~i~~~ 254 (354)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999987654 68999999 878777654 4579999999876 2 23 59999983
Q ss_pred cc------ccc-------CChHH-------HHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WV------LHD-------WGDDE-------CIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~------lh~-------~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
-. +.. |..+. -.++|+++.+.||| ||+|+.+.-..
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp-GG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN-KGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE-EEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEEeec
Confidence 32 211 11111 13789999999999 99988765433
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=84.06 Aligned_cols=89 Identities=13% Similarity=0.217 Sum_probs=67.3
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-- 247 (354)
...+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 345555555 567789999999999999999998 568999999 888887765 4789999999998 6654
Q ss_pred ceEEEeccccccCChHHHHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L 269 (354)
||+|+++.. ++++.+-..++|
T Consensus 115 fD~Iv~NlP-y~is~pil~~lL 135 (295)
T 3gru_A 115 FNKVVANLP-YQISSPITFKLI 135 (295)
T ss_dssp CSEEEEECC-GGGHHHHHHHHH
T ss_pred ccEEEEeCc-ccccHHHHHHHH
Confidence 999986644 334444333333
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.9e-08 Score=87.84 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=74.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~D~i~~~~~lh~ 259 (354)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ .++++++.+|+++....||+|++.-.-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 3568999999999999999 76 4778999999 888887765 258999999998844669999984321
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
...++++.+.+.|+| ||.+++.+..
T Consensus 269 ----~~~~~l~~~~~~L~~-gG~l~~~~~~ 293 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEE-GGVIHYYTIG 293 (336)
T ss_dssp ----TGGGGHHHHHHHEEE-EEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCC-CCEEEEEEee
Confidence 123789999999999 9998887654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=80.65 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=95.4
Q ss_pred CCceEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechHH--------hhhccc--------------C
Q 018565 189 GIETLVDIGGNDGTTLRTL--------TKAF-------PRIRGINFDLPHV--------VCVAEK--------------C 231 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a~~--------------~ 231 (354)
...+|+|+|||+|..+..+ .+++ |.+++..-|+|.- +...++ .
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3689999999999888776 2233 7888999998521 122110 0
Q ss_pred CCeEEeecCCCC-CCC--cceEEEeccccccCCh------------------------------------HHHHHHHHHH
Q 018565 232 HGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGD------------------------------------DECIKILKNC 272 (354)
Q Consensus 232 ~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~------------------------------------~~~~~~L~~~ 272 (354)
--+.-+++.|.. .+| ++|+|+.+.+||-.++ .+...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 113335677777 455 4999999999997651 1344579999
Q ss_pred HHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhc-cH-----Hhhcc------------cCCcccCCHHHHHHHHH-Hc
Q 018565 273 KEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLML-DM-----VMMAH------------TNKGKERSLKEWDYVLR-QA 333 (354)
Q Consensus 273 ~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~-~l-----~~~~~------------~~~g~~~t~~e~~~ll~-~a 333 (354)
++.|+| ||++++.-...++... .. .......+ +. ..+.. ......++.+|+..+++ +.
T Consensus 212 a~eL~p-GG~mvl~~~gr~~~~~-~~-~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~ 288 (374)
T 3b5i_A 212 AAEVKR-GGAMFLVCLGRTSVDP-TD-QGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG 288 (374)
T ss_dssp HHHEEE-EEEEEEEEEECCCSST-TC-CHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred HHHhCC-CCEEEEEEecCCCCcc-cc-ccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence 999999 9999987776554321 10 00000111 11 11111 01123468999999998 59
Q ss_pred CCceeEEEEc
Q 018565 334 GFSRYNITSI 343 (354)
Q Consensus 334 Gf~~~~~~~~ 343 (354)
||++.++...
T Consensus 289 ~F~I~~le~~ 298 (374)
T 3b5i_A 289 SFAIDKLVVY 298 (374)
T ss_dssp SEEEEEEEEE
T ss_pred CcEEEEEEEE
Confidence 9998876543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.8e-08 Score=89.50 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=75.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC-------CCcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG-------VPEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~-------~~~~D~i~~~ 254 (354)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+++. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5689999999999999999987 568999999 888887765 24599999998772 1259999985
Q ss_pred cccccCCh-------HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 255 WVLHDWGD-------DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 255 ~~lh~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
-..+..+. ....++++.+.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE-GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE-EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 33222111 3456789999999999 999888653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.8e-08 Score=89.98 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=75.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-------CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-------VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-------~~~~D~i~~ 253 (354)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++. ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999986 3458999999 888887765 12899999998762 125999998
Q ss_pred ccccccCCh-------HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 254 KWVLHDWGD-------DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 254 ~~~lh~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.-..+..+. .....+++++.+.|+| ||.++++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD-GGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE-EEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEEC
Confidence 543322221 3456889999999999 998887653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.53 E-value=9.1e-08 Score=90.88 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=76.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHhhhccc-----C-C--CeEEeecCCCC-C
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAF-------------PRIRGINFDL-PHVVCVAEK-----C-H--GVEHVGGDMFD-G 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~-~--~v~~~~~d~~~-~ 244 (354)
....+|+|.|||+|.++..+.+.. +..+++++|+ +.++..++. . . ++.+..+|.+. +
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 456799999999999999888753 4568999999 888877653 1 1 68899999988 4
Q ss_pred CC-cceEEEeccccccCChH---------------HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 245 VP-EADAAIIKWVLHDWGDD---------------ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 245 ~~-~~D~i~~~~~lh~~~~~---------------~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.. .||+|+++-.++..... .-..+++++.+.|+| ||++.++-+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~-gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT-GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE-EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc-CCEEEEEEC
Confidence 33 59999998666542211 124789999999999 999988653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-07 Score=85.76 Aligned_cols=111 Identities=9% Similarity=0.036 Sum_probs=79.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPR--------------------------------------IRGI 217 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 217 (354)
+..++.... +.+...|||.+||+|.+++..+....+ .+++
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344555555 557789999999999999988765433 5699
Q ss_pred Eeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEeccccccC-C-hHHHHHHHHHHHHhcCC-CCceEE
Q 018565 218 NFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDW-G-DDECIKILKNCKEAITK-DKGKVI 284 (354)
Q Consensus 218 ~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~-~-~~~~~~~L~~~~~~L~p-~gG~ll 284 (354)
++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|+++-..+.- . .+....+.+.+.+.||+ +||+++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9999 899888775 3579999999998 444 59999997544321 1 24556667767666654 388888
Q ss_pred EEee
Q 018565 285 IVEA 288 (354)
Q Consensus 285 i~e~ 288 (354)
|+..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8e-08 Score=89.46 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CC-CeEEeecCCCC--C-C----CcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CH-GVEHVGGDMFD--G-V----PEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~v~~~~~d~~~--~-~----~~~D~i~ 252 (354)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+ +++++.+|+++ + . ..||+|+
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 46799999999999999999853 338999999 888888765 22 89999999876 2 1 2599999
Q ss_pred eccccc-----cCC--hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 IKWVLH-----DWG--DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 ~~~~lh-----~~~--~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-... ... .....++++.+.+.|+| ||.+++..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p-gG~l~~~~ 331 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE-NGLIIAST 331 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 853331 111 12345688889999999 99887754
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=87.38 Aligned_cols=97 Identities=8% Similarity=0.064 Sum_probs=71.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC---C-CcceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG---V-PEADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~---~-~~~D~i~~~~~lh 258 (354)
++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .-..++..+|+++. . +.||+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 4789999999999999999987 345999999 888888765 22235678888772 2 2499999854332
Q ss_pred cCCh-------HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 259 DWGD-------DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 259 ~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.-+. ....++++.+.+.|+| ||.|+++..
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp-GG~Lv~~s~ 327 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAE-EGFLWLSSC 327 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEE-EEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 1111 2335789999999999 999886553
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.50 E-value=9e-07 Score=82.07 Aligned_cols=111 Identities=16% Similarity=0.030 Sum_probs=81.9
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPR--------------------------------------IRGI 217 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 217 (354)
+..++.... +.+...+||.+||+|.++++.+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344455445 557789999999999999988765433 5699
Q ss_pred Eeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEecccccc-C-ChHHHHHHHHHHHHhcCC-CCceEE
Q 018565 218 NFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD-W-GDDECIKILKNCKEAITK-DKGKVI 284 (354)
Q Consensus 218 ~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L~p-~gG~ll 284 (354)
++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|+++-..+. + ..++..++.+.+.+.||+ +||+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9999 889888775 3579999999998 443 5999999755432 2 235667788888877764 388888
Q ss_pred EEee
Q 018565 285 IVEA 288 (354)
Q Consensus 285 i~e~ 288 (354)
|+..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=87.33 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=74.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------C-C-CeEEeecCCCCC-------CCcceEEE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------C-H-GVEHVGGDMFDG-------VPEADAAI 252 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-~v~~~~~d~~~~-------~~~~D~i~ 252 (354)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++.+|+++. ...||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 46799999999999999999864 458999999 888887764 2 3 799999998872 13599999
Q ss_pred eccccccCC-------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 IKWVLHDWG-------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 ~~~~lh~~~-------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-.....+ .....+++.++.+.|+| ||.+++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNE-GGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 864321110 13456889999999999 99888754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=84.15 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=80.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPR--------------------------------------IRGI 217 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 217 (354)
+..++.... +.+..+|||.+||+|.+++.++....+ .+++
T Consensus 184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 344555555 557789999999999999988775322 5799
Q ss_pred Eeec-hHHhhhccc-------CCCeEEeecCCCC-CCC-cceEEEecccccc-CC-hHHHHHHHHHHHHhcCC-CCceEE
Q 018565 218 NFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD-WG-DDECIKILKNCKEAITK-DKGKVI 284 (354)
Q Consensus 218 ~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~-~~-~~~~~~~L~~~~~~L~p-~gG~ll 284 (354)
++|+ +.+++.++. .+++++..+|+.+ +.+ .||+|+++-.... +. .+...++.+.+.+.|++ +|+.++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 9999 899988875 3479999999998 444 4999999655432 12 34566777777777764 278888
Q ss_pred EEee
Q 018565 285 IVEA 288 (354)
Q Consensus 285 i~e~ 288 (354)
++..
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7653
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.6e-07 Score=90.24 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=87.5
Q ss_pred ChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCc--cCCCceEEEecCCccHHHHHHHH---HC-CCCeEEEeech
Q 018565 149 DVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEV--FDGIETLVDIGGNDGTTLRTLTK---AF-PRIRGINFDLP 222 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~---~~-p~~~~~~~D~~ 222 (354)
..|+.+++++-+-..|.+|+.. .+.+..... ......|+|||||+|-++...++ +. -++++.+++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4588899999887888877653 222222210 22446899999999988544433 32 23467888884
Q ss_pred HHhhhccc-------CCCeEEeecCCCC-CCCc-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEE
Q 018565 223 HVVCVAEK-------CHGVEHVGGDMFD-GVPE-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 223 ~~~~~a~~-------~~~v~~~~~d~~~-~~~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~ll 284 (354)
.+...+++ .++|+++.+|+.+ ..|+ +|+|+.-.+=.....+....+|....+.||| ||.++
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP-gGimi 464 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD-DGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE-EEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC-CcEEc
Confidence 45554443 7899999999999 6664 9999886554444445556788888899999 87653
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.4e-07 Score=78.98 Aligned_cols=89 Identities=17% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-CCC---cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-GVP---EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~~~---~~ 248 (354)
+.+++.+. ..+. +|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 34444444 5566 99999999999999999974 68999999 888888765 4689999999998 654 46
Q ss_pred eEEEeccccccCChHHHHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKN 271 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~ 271 (354)
|.|+ .|.-++.+.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 6654 455566676666666654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-07 Score=78.07 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=66.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-CCCc-c-eE
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-GVPE-A-DA 250 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~~~~-~-D~ 250 (354)
+.+++.+. ..+..+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 45555555 556789999999999999999987 4578999999 888887765 3679999999998 6554 2 45
Q ss_pred EEeccccccCChHHHHHHH
Q 018565 251 AIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 251 i~~~~~lh~~~~~~~~~~L 269 (354)
+++.|.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666665544433333
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=78.75 Aligned_cols=151 Identities=16% Similarity=0.141 Sum_probs=92.4
Q ss_pred CceEEEecCCccHHHHHHHHH-----------------CCCCeEEEeech-----------H-Hhhhccc--C--CCeEE
Q 018565 190 IETLVDIGGNDGTTLRTLTKA-----------------FPRIRGINFDLP-----------H-VVCVAEK--C--HGVEH 236 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a~~--~--~~v~~ 236 (354)
..+|+|+||++|..+..++.. .|.++++.-|+| . ..+.+++ . .+--|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999998877665 477888899986 1 1111111 1 12233
Q ss_pred ---eecCCCC-CCC--cceEEEeccccccCChH-------------------------HHH------------HHHHHHH
Q 018565 237 ---VGGDMFD-GVP--EADAAIIKWVLHDWGDD-------------------------ECI------------KILKNCK 273 (354)
Q Consensus 237 ---~~~d~~~-~~~--~~D~i~~~~~lh~~~~~-------------------------~~~------------~~L~~~~ 273 (354)
+++.|.. .+| ++|+|+.+.+||-.++. .+. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777 466 49999999999954322 121 2377789
Q ss_pred HhcCCCCceEEEEeeeeCCC--CCCCcchhhhhhhccHHhhc---------ccCCcccCCHHHHHHHHHHcC-CceeEEE
Q 018565 274 EAITKDKGKVIIVEAIIEED--DGVDNKFKSVRLMLDMVMMA---------HTNKGKERSLKEWDYVLRQAG-FSRYNIT 341 (354)
Q Consensus 274 ~~L~p~gG~lli~e~~~~~~--~~~~~~~~~~~~~~~l~~~~---------~~~~g~~~t~~e~~~ll~~aG-f~~~~~~ 341 (354)
+.|+| ||++++.-...++. .. ...-.....+.++.... .......++.+|++.+++++| |++.++.
T Consensus 213 ~eL~p-GG~mvl~~~gr~~~~~~~-~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELIS-RGRMLLTFICKEDEFDHP-NSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEE-EEEEEEEEECCCTTTCCC-CHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhcc-CCeEEEEEecCCCcccCc-ccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 99999 99999877766554 21 10000011121111110 101224568999999999985 7777654
Q ss_pred E
Q 018565 342 S 342 (354)
Q Consensus 342 ~ 342 (354)
.
T Consensus 291 ~ 291 (384)
T 2efj_A 291 T 291 (384)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-07 Score=81.22 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=62.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C--C--
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G--V-- 245 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~--~-- 245 (354)
+.+++.+. ..++.+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 44455444 55678999999999999999999999889999999 889888765 3689999999876 3 1
Q ss_pred ---CcceEEEecc
Q 018565 246 ---PEADAAIIKW 255 (354)
Q Consensus 246 ---~~~D~i~~~~ 255 (354)
..||.|++.-
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 3599998744
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=82.63 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=66.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC-------CcceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV-------PEADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~-------~~~D~i~ 252 (354)
..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..+++|+.+|+.+.. ..||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456689999999999999999987 678999999 888888764 358999999998732 1499999
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+.-.-. ....+++.+.+ ++| ++.+++
T Consensus 362 ~dPPr~-----g~~~~~~~l~~-~~p-~~ivyv 387 (433)
T 1uwv_A 362 LDPARA-----GAAGVMQQIIK-LEP-IRIVYV 387 (433)
T ss_dssp ECCCTT-----CCHHHHHHHHH-HCC-SEEEEE
T ss_pred ECCCCc-----cHHHHHHHHHh-cCC-CeEEEE
Confidence 843221 12245555543 678 665554
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-06 Score=74.91 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=105.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------------------------CCCeEEeecC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------------------------CHGVEHVGGD 240 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~d 240 (354)
.+...||.+|||.......+...+++++++-+|.|++++.-++ .++.+++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999998888999999999988765432 2689999999
Q ss_pred CCC-CC--------C--c-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc
Q 018565 241 MFD-GV--------P--E-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD 308 (354)
Q Consensus 241 ~~~-~~--------~--~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~ 308 (354)
+.+ +. + + ..++++-.++++++.+.+.++++.+.+.+ | +|.+++.|.+.+.... . ++... ....
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~-~~~~v~~e~i~~~~~~-~-~fg~~-m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S-HGLWISYDPIGGSQPN-D-RFGAI-MQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S-SEEEEEEEECCCCSTT-C-CHHHH-HHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C-CcEEEEEeccCCCCCc-c-hHHHH-HHHH
Confidence 987 22 1 2 57889999999999999999999999988 6 7888889988763222 1 12111 0011
Q ss_pred HHh-hccc--CCcccCCHHHHHHHHHHcCCc
Q 018565 309 MVM-MAHT--NKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 309 l~~-~~~~--~~g~~~t~~e~~~ll~~aGf~ 336 (354)
+.. .... ......+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 111 1110 112345889999999999997
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.4e-07 Score=88.34 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=74.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------C-CCeEEeecCCCC--C--CCcceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------C-HGVEHVGGDMFD--G--VPEADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~v~~~~~d~~~--~--~~~~D~i~~~~ 255 (354)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++.+|.++ + ...||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46799999999999999988853 346999999 888888765 2 489999999987 2 23599999854
Q ss_pred ccc--------cCC-hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLH--------DWG-DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh--------~~~-~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+ .+. .....++++.+.+.|+| ||.|++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp-gG~L~~s~ 657 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA-GGTIMFSN 657 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 321 111 23567889999999999 99888644
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.1e-07 Score=78.96 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=62.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC----
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP---- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~---- 246 (354)
..+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 34455555 5667899999999999999999874 68999999 888888765 3789999999998 543
Q ss_pred --cceEEEeccccccCChHHHHHHH
Q 018565 247 --EADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 247 --~~D~i~~~~~lh~~~~~~~~~~L 269 (354)
++| ++.|.-++.+.+-..++|
T Consensus 95 ~~~~~--vv~NlPY~is~~il~~ll 117 (255)
T 3tqs_A 95 DKPLR--VVGNLPYNISTPLLFHLF 117 (255)
T ss_dssp SSCEE--EEEECCHHHHHHHHHHHH
T ss_pred CCCeE--EEecCCcccCHHHHHHHH
Confidence 255 444544444443333333
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-07 Score=81.46 Aligned_cols=84 Identities=18% Similarity=0.148 Sum_probs=61.2
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHhhhccc--CCCeEEeecCCCC-CCCc-c-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPR--IRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-GVPE-A- 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~~~~-~- 248 (354)
+.+++.+. ..+..+|||||||+|.++..++++.+. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. +
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 34444444 556789999999999999999998653 45999999 888888875 3689999999998 6554 2
Q ss_pred -----eEEEeccccccCCh
Q 018565 249 -----DAAIIKWVLHDWGD 262 (354)
Q Consensus 249 -----D~i~~~~~lh~~~~ 262 (354)
...++.|.-++.+.
T Consensus 110 ~~~~~~~~vv~NlPY~iss 128 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPYNISS 128 (279)
T ss_dssp SSSSCCEEEEEECCHHHHH
T ss_pred cccCCceEEEEccCccccH
Confidence 24455555444333
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=77.19 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=75.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCC----CCcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDG----VPEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~----~~~~D~i 251 (354)
+++.+||-||+|.|..+.++++..|..+++.+|+ +.+++.+++ .+|++++.+|..+- ...||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999999777778999999 888887754 58999999999872 2249999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+.-..=..-+.. --..+++.++++|+| ||.++..
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p-~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP-GGIFVAQ 197 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEE-EEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCC-CCEEEEe
Confidence 874321110110 124789999999999 8877764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-06 Score=79.38 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=66.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC-cceEEEeccccccC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP-EADAAIIKWVLHDW 260 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~-~~D~i~~~~~lh~~ 260 (354)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. +++..+|+.+..+ .||+|++.-.-...
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g~ 366 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAGL 366 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTCS
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccch
Confidence 5679999999999999999886 458999999 888888765 23 9999999988433 69999985432211
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
. ..+++.+. .|+| +|.+++.
T Consensus 367 ~----~~~~~~l~-~l~p-~givyvs 386 (425)
T 2jjq_A 367 H----PRLVKRLN-REKP-GVIVYVS 386 (425)
T ss_dssp C----HHHHHHHH-HHCC-SEEEEEE
T ss_pred H----HHHHHHHH-hcCC-CcEEEEE
Confidence 1 13455554 4899 8877774
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-06 Score=74.34 Aligned_cols=106 Identities=8% Similarity=-0.029 Sum_probs=66.3
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHhhhccc----CCCeEEeecCCCC-CC--Ccc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLP-HVVCVAEK----CHGVEHVGGDMFD-GV--PEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~--~~~ 248 (354)
.++.+... +.+..+|||+|||+|.++..++++.+...++++|+. ........ ..++.....++.. .+ .++
T Consensus 64 ~ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 64 RWFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 34444433 677789999999999999998887655566666662 22111111 1133444444322 33 359
Q ss_pred eEEEeccccc---cCChH-HHHHHHHHHHHhcCCCC-ceEEE
Q 018565 249 DAAIIKWVLH---DWGDD-ECIKILKNCKEAITKDK-GKVII 285 (354)
Q Consensus 249 D~i~~~~~lh---~~~~~-~~~~~L~~~~~~L~p~g-G~lli 285 (354)
|+|++....+ .+-|. ....+|+.+.++|+| | |.+++
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp-G~G~FV~ 182 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLAC-GVDNFCV 182 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCC-CCCeEEE
Confidence 9999976555 12122 334568999999999 9 98877
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=72.51 Aligned_cols=151 Identities=14% Similarity=0.143 Sum_probs=91.4
Q ss_pred CCCceEEEecCCccHHHHHHHHH----------------CCCCeEEEeech-HHhhhc-cc------CCC---eEEeecC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA----------------FPRIRGINFDLP-HVVCVA-EK------CHG---VEHVGGD 240 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~~a-~~------~~~---v~~~~~d 240 (354)
+...+|+|+||++|..+..++.. .|.++++.-|+| +....+ +. ..+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45678999999999776654332 567788899984 222211 11 012 2235678
Q ss_pred CCC-CCC--cceEEEeccccccCCh-------------------------------HHHHHHHHHHHHhcCCCCceEEEE
Q 018565 241 MFD-GVP--EADAAIIKWVLHDWGD-------------------------------DECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 241 ~~~-~~~--~~D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
|.. .+| ++|+++.+.+||-.++ .+...+|+..++.|+| ||++++.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p-GG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP-GGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT-TCEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEE
Confidence 877 566 4999999999995432 1234569999999999 9999987
Q ss_pred eeeeCCCCCCCcc-----hh-hhhhhccHHhhcc---------cCCcccCCHHHHHHHHHHcCC-ceeEE
Q 018565 287 EAIIEEDDGVDNK-----FK-SVRLMLDMVMMAH---------TNKGKERSLKEWDYVLRQAGF-SRYNI 340 (354)
Q Consensus 287 e~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~---------~~~g~~~t~~e~~~ll~~aGf-~~~~~ 340 (354)
-...++... ... +. ....+.++..... ......++.+|++.+++++|. ++.+.
T Consensus 209 ~~gr~~~~~-~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 209 ILGRRSEDR-ASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEECSSSSS-SSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EecCCCCCc-cccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 776654321 000 00 0011111111000 012245689999999999965 66554
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-06 Score=83.72 Aligned_cols=127 Identities=11% Similarity=0.076 Sum_probs=86.4
Q ss_pred ChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH----C---------CCCe
Q 018565 149 DVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA----F---------PRIR 215 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~---------p~~~ 215 (354)
..|+.+++++-+-..|.+|+.... ..+... ......|+|||||+|-++...+++ . ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al----~d~~~~----~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGAL----KDLGAD----GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH----HHHHTT----CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHHH----HHhhcc----cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 458888899988888888876531 111110 123578999999999997543222 1 2347
Q ss_pred EEEeec-hHHhhhccc------CCCeEEeecCCCC-CC------C-cceEEEeccccccCChHHHHHHHHHHHHhcCCCC
Q 018565 216 GINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GV------P-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDK 280 (354)
Q Consensus 216 ~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~------~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~g 280 (354)
+++++. +.++...+. .++|+++.+|+.+ .. + .+|+|+.-..=.....+.....|..+.+.||| |
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp-~ 527 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP-T 527 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT-T
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC-C
Confidence 899998 444333221 6889999999998 44 3 59999987765444455566788888999999 8
Q ss_pred ceEE
Q 018565 281 GKVI 284 (354)
Q Consensus 281 G~ll 284 (354)
|.++
T Consensus 528 Gi~i 531 (745)
T 3ua3_A 528 TISI 531 (745)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 8543
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-06 Score=76.30 Aligned_cols=89 Identities=8% Similarity=0.005 Sum_probs=62.5
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc---
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE--- 247 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~--- 247 (354)
..+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 34444444 5567899999999999999 54 444444999999 899988876 2489999999988 5442
Q ss_pred ---ceEEEeccccccCChHHHHHHH
Q 018565 248 ---ADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 248 ---~D~i~~~~~lh~~~~~~~~~~L 269 (354)
.+.++++|.-++.+.+-..+++
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2356666666665555444444
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-06 Score=79.41 Aligned_cols=87 Identities=8% Similarity=0.076 Sum_probs=64.0
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC---C--------------
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG---V-------------- 245 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~---~-------------- 245 (354)
+.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|..+- .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 468999999999999998875 358999999 888887764 35899999998651 1
Q ss_pred --CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 246 --PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 246 --~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..||+|++.-.-. .+..++.+.|+| +|+++++.
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~-~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQA-YPRILYIS 326 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTT-SSEEEEEE
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhC-CCEEEEEE
Confidence 1589998732211 233455566677 88888764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.4e-06 Score=72.66 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCC-eEEeec-CCCC-CCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHG-VEHVGG-DMFD-GVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-v~~~~~-d~~~-~~~~ 247 (354)
..++.+.+. +.+..+|||+|||.|.++..++++.+-..++++|+ ......+.. ..+ +.+... |+.. +...
T Consensus 79 L~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP 156 (282)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence 445666654 77888999999999999999988777667788887 332222211 122 333322 4443 3335
Q ss_pred ceEEEeccccc----cCChHHHHHHHHHHHHhcCCCC--ceEEE
Q 018565 248 ADAAIIKWVLH----DWGDDECIKILKNCKEAITKDK--GKVII 285 (354)
Q Consensus 248 ~D~i~~~~~lh----~~~~~~~~~~L~~~~~~L~p~g--G~lli 285 (354)
+|+|++-...+ ..+......+|+-+.++|+| | |.+++
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~-g~~G~Fv~ 199 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE-GNYTEFCI 199 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH-HCCCEEEE
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC-CCCCcEEE
Confidence 99999976665 11222334578888899999 8 88776
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.08 E-value=7.4e-06 Score=71.71 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=55.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-h-------HHhhhccc-------CCCeEEeecCCCC--C-C---
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-P-------HVVCVAEK-------CHGVEHVGGDMFD--G-V--- 245 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~~v~~~~~d~~~--~-~--- 245 (354)
..+..+|||+|||+|..+..+++. +.+++++|+ + .+++.++. ..+++++.+|..+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999986 568999999 7 77776653 3569999999876 2 3
Q ss_pred -CcceEEEecccccc
Q 018565 246 -PEADAAIIKWVLHD 259 (354)
Q Consensus 246 -~~~D~i~~~~~lh~ 259 (354)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 45999999655543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=79.91 Aligned_cols=110 Identities=13% Similarity=-0.007 Sum_probs=77.1
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH------------------------------------------CCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA------------------------------------------FPR 213 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------------------------------------------~p~ 213 (354)
+..++.... +.+...|||.+||+|.+++..+.. .+.
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344455445 456789999999999999887764 233
Q ss_pred CeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC----cceEEEecccccc-C-ChHHHHHHHHHHHHhc--
Q 018565 214 IRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP----EADAAIIKWVLHD-W-GDDECIKILKNCKEAI-- 276 (354)
Q Consensus 214 ~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~----~~D~i~~~~~lh~-~-~~~~~~~~L~~~~~~L-- 276 (354)
.+++++|+ +.+++.|+. .+.+++..+|+.+ ..| .||+|+++-.... + ..+....+.+.+.+.|
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 68999999 999988775 3569999999987 222 5899999744332 1 2334555666555554
Q ss_pred -CCCCceEEEEee
Q 018565 277 -TKDKGKVIIVEA 288 (354)
Q Consensus 277 -~p~gG~lli~e~ 288 (354)
.| ||+++|+..
T Consensus 337 ~~~-g~~~~ilt~ 348 (703)
T 3v97_A 337 QFG-GWNLSLFSA 348 (703)
T ss_dssp HCT-TCEEEEEES
T ss_pred hCC-CCeEEEEeC
Confidence 47 999998753
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.1e-06 Score=63.48 Aligned_cols=83 Identities=16% Similarity=0.084 Sum_probs=59.7
Q ss_pred CCCceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCC----cceEEEeccccccCC
Q 018565 188 DGIETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVP----EADAAIIKWVLHDWG 261 (354)
Q Consensus 188 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~----~~D~i~~~~~lh~~~ 261 (354)
.+..++||||||+| ..+..|++. .+..++++|+ |..++ ++..|+|+|.. +||+|...+.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP----- 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP----- 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC-----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC-----
Confidence 35679999999999 588888764 4788999998 54443 88899999644 6999988763
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+.+...-+.++.+.. |.-++|.-.
T Consensus 99 P~El~~~i~~lA~~v---~adliI~pL 122 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV---GARLIIKPL 122 (153)
T ss_dssp CTTTHHHHHHHHHHH---TCEEEEECB
T ss_pred CHHHHHHHHHHHHHc---CCCEEEEcC
Confidence 444555566666554 456666543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.9e-06 Score=75.95 Aligned_cols=92 Identities=8% Similarity=-0.030 Sum_probs=70.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----C-----------------CCeEEeecCCCCC--
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----C-----------------HGVEHVGGDMFDG-- 244 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~~v~~~~~d~~~~-- 244 (354)
++.+|||+|||+|..+..++++.+..+++++|+ ++.++.+++ . .++++..+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 357999999999999999999988888999999 877776653 1 2388999998762
Q ss_pred -C-CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 245 -V-PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 245 -~-~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
. ..||+|++.- .. . ...++..+.+.|+| ||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~~---~--~~~~l~~a~~~lk~-gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG---S--PMEFLDTALRSAKR-RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS---C--CHHHHHHHHHHEEE-EEEEEEEE
T ss_pred hccCCCCEEEeCC-CC---C--HHHHHHHHHHhcCC-CCEEEEEe
Confidence 2 2599999532 11 1 24788999999999 99777654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=9.8e-06 Score=70.79 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=63.2
Q ss_pred CCceEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec-h---HHhh-----------hccc-----------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKA-------FPR-----IRGINFDL-P---HVVC-----------VAEK----------- 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~~----------- 230 (354)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+. .++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887654 674 57888886 4 2222 1110
Q ss_pred ---------CCCeEEeecCCCC--C-CC-----cceEEEeccc-cccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 231 ---------CHGVEHVGGDMFD--G-VP-----EADAAIIKWV-LHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 231 ---------~~~v~~~~~d~~~--~-~~-----~~D~i~~~~~-lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
..++++..+|..+ + .+ .||+|++--. -..-|+-.-..+|+.+++.|+| ||.++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p-GG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP-GGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE-EEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC-CcEEEE
Confidence 2457788899866 2 22 5899998421 1100110124789999999999 988763
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-05 Score=77.12 Aligned_cols=99 Identities=14% Similarity=0.135 Sum_probs=73.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC------------------CCeEEEeec-hHHhhhccc------CCC-----eEEe
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP------------------RIRGINFDL-PHVVCVAEK------CHG-----VEHV 237 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~~-----v~~~ 237 (354)
.+..+|+|.+||+|.++..+.+... ..+++++|+ +.++..++. ... +.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4567999999999999988876431 247999999 888777653 222 7889
Q ss_pred ecCCCC-C---CCcceEEEeccccccCCh------------HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 238 GGDMFD-G---VPEADAAIIKWVLHDWGD------------DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 238 ~~d~~~-~---~~~~D~i~~~~~lh~~~~------------~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.+|.+. + .+.||+|+++-.+..... ..-..++.++.+.|+| ||++.++-
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~-gGr~a~V~ 312 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP-GGRAAVVV 312 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC-CCEEEEEe
Confidence 999987 3 246999999765543211 1224789999999999 99998864
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.8e-05 Score=69.89 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=54.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CC-----CcceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GV-----PEADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~-----~~~D~i~ 252 (354)
..++.+|||+|||+|..+..+++.. +..+++++|+ ++.++.+++ ..+++++.+|+.+ +. ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999874 5678999999 887777664 3579999999876 21 3589998
Q ss_pred e
Q 018565 253 I 253 (354)
Q Consensus 253 ~ 253 (354)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-05 Score=74.86 Aligned_cols=92 Identities=9% Similarity=0.019 Sum_probs=71.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhccc-------CCC-eEEeecCCCC--C--CC-cceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEK-------CHG-VEHVGGDMFD--G--VP-EADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~~-v~~~~~d~~~--~--~~-~~D~i~~ 253 (354)
++.+|||++||+|.+++.++++.++ .+++++|+ +..++.+++ .++ ++++.+|.++ . .+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 5689999999999999999998665 57899999 888887765 244 9999999865 2 22 4999998
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.- . .. ...+++.+.+.|+| ||.|++..
T Consensus 132 DP--~--g~--~~~~l~~a~~~Lk~-gGll~~t~ 158 (392)
T 3axs_A 132 DP--F--GT--PVPFIESVALSMKR-GGILSLTA 158 (392)
T ss_dssp CC--S--SC--CHHHHHHHHHHEEE-EEEEEEEE
T ss_pred CC--C--cC--HHHHHHHHHHHhCC-CCEEEEEe
Confidence 54 1 11 13588899999999 99776654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00014 Score=66.23 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=66.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChH
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDD 263 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~ 263 (354)
+.++.++||+||++|.++..++++ +.+++++|...+.......++|++..+|.+. ..+ ++|+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 457899999999999999999987 6799999985555555557899999999998 332 499999977654 34
Q ss_pred HHHHHHHHHHHhcCCCCceEE
Q 018565 264 ECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 264 ~~~~~L~~~~~~L~p~gG~ll 284 (354)
....++.+....... ++.++
T Consensus 284 ~~~~l~~~wl~~~~~-~~aI~ 303 (375)
T 4auk_A 284 KVAALMAQWLVNGWC-RETIF 303 (375)
T ss_dssp HHHHHHHHHHHTTSC-SEEEE
T ss_pred HhHHHHHHHHhcccc-ceEEE
Confidence 444444443333333 34433
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.6e-05 Score=73.51 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=69.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC---CCeEEEeec-hHHhhhc--cc----------CCCeEEeecCCCCC----CCc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP---RIRGINFDL-PHVVCVA--EK----------CHGVEHVGGDMFDG----VPE 247 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~----------~~~v~~~~~d~~~~----~~~ 247 (354)
.+..+|+|.|||+|.++..+++..+ ..+++++|+ +.++..+ +. .....+...|++.+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4568999999999999999998775 357899999 7777666 21 12235666777762 235
Q ss_pred ceEEEecccccc-CChH--------------------------HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 248 ADAAIIKWVLHD-WGDD--------------------------ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 248 ~D~i~~~~~lh~-~~~~--------------------------~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
||+|+++-.... +..+ ....++.++.+.|+| ||++.++-
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp-GGrLAfIl 465 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD-GTVISAIM 465 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT-TCEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC-CcEEEEEE
Confidence 999999655421 1111 123478889999999 99998854
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.4e-05 Score=65.83 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=64.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----C-CCeEEeec-CCCC-CCCcceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----C-HGVEHVGG-DMFD-GVPEADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~-d~~~-~~~~~D~i~~~~~lh 258 (354)
+.+..+|||+||++|.++..++++.+-..++++|+ ......... . +-+.+..+ |++. +...+|+|++....+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 56789999999999999999998766556778887 222111110 1 22333333 5544 333599999865554
Q ss_pred ----cCChHHHHHHHHHHHHhcCCCC-ceEEEE
Q 018565 259 ----DWGDDECIKILKNCKEAITKDK-GKVIIV 286 (354)
Q Consensus 259 ----~~~~~~~~~~L~~~~~~L~p~g-G~lli~ 286 (354)
..+......+|.-+.++|+| | |.+++=
T Consensus 159 sG~~~~D~~rs~~LL~~A~~~Lkp-G~G~FV~K 190 (300)
T 3eld_A 159 SSNPLVERDRTMKVLENFERWKHV-NTENFCVK 190 (300)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCT-TCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcC-CCCcEEEE
Confidence 11111235668888999999 9 987773
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.9e-05 Score=75.24 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=68.8
Q ss_pred ceEEEecCCccHHHHHHHHHCC---------------CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C-C
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFP---------------RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G-V 245 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~-~ 245 (354)
.+|+|.+||+|.++..+.+..+ ..+++++|+ +.++..++. ..++.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999888765332 467899999 878777663 2345558889887 3 2
Q ss_pred C--cceEEEecccccc--CChH-------------------------HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 246 P--EADAAIIKWVLHD--WGDD-------------------------ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 246 ~--~~D~i~~~~~lh~--~~~~-------------------------~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+ .||+|+++-.... |..+ .-..++.++.+.|+| ||++.++-
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~-gGr~aiVl 395 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP-TGSMALLL 395 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc-CceEEEEe
Confidence 2 4999999654432 2211 112689999999999 99988764
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00058 Score=61.75 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=103.6
Q ss_pred CCceEEEecCCccHHHHHHHHH-CCCCeEEEeechHHhhhcc-----------------------------cCCCeEEee
Q 018565 189 GIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDLPHVVCVAE-----------------------------KCHGVEHVG 238 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~v~~~~ 238 (354)
+...||-+|||.=.....+... .+++++.-+|.|++++.-+ ...+.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4689999999999988888765 3678899999988876321 146889999
Q ss_pred cCCCCC--C---------C-c-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhh
Q 018565 239 GDMFDG--V---------P-E-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRL 305 (354)
Q Consensus 239 ~d~~~~--~---------~-~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~ 305 (354)
.|+.+. . . + .-++++-.++.+++.+++.++|+.+.+..++ |.+++.|.+.+.+. + ..
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~--~~~i~yE~i~p~d~-----f---g~ 239 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER--AMFINYEQVNMGDR-----F---GQ 239 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS--EEEEEEEECCTTSH-----H---HH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC--ceEEEEeccCCCCH-----H---HH
Confidence 999761 1 1 1 4478888999999999999999999998865 77778898854321 1 11
Q ss_pred hccHHhhcc--cCCc--ccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 306 MLDMVMMAH--TNKG--KERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 306 ~~~l~~~~~--~~~g--~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
.+--++... ...+ ...+.++..+.|.++||+.++++++.
T Consensus 240 ~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 282 (334)
T 3iei_A 240 IMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMM 282 (334)
T ss_dssp HHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHH
T ss_pred HHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecHH
Confidence 111111111 0011 23477888999999999998877653
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0001 Score=67.32 Aligned_cols=97 Identities=16% Similarity=0.057 Sum_probs=71.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------------CCCeEEeecCCCCC-------C
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------------CHGVEHVGGDMFDG-------V 245 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~v~~~~~d~~~~-------~ 245 (354)
.++.+||=||+|.|..+.++++. |.-+++.+|+ |.+++.+++ .+|++++.+|...- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999985 5578999999 889887764 25689999987651 2
Q ss_pred CcceEEEeccccccC-------C-hHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 246 PEADAAIIKWVLHDW-------G-DDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~-------~-~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
..||+|+.-..-... . .--..++++.++++|+| ||.++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p-~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ-DGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC-CCEEEEe
Confidence 359999875321110 0 11235788999999999 8877653
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.9e-05 Score=64.99 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=53.0
Q ss_pred cCCC--ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHH-------hhhccc-----C---CCeEEeecCCCC--C-C
Q 018565 187 FDGI--ETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHV-------VCVAEK-----C---HGVEHVGGDMFD--G-V 245 (354)
Q Consensus 187 ~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-----~---~~v~~~~~d~~~--~-~ 245 (354)
..++ .+|||+|||+|..+..++++ +.+++++|. +.+ ++.++. . .+++++.+|..+ + .
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999998 568999999 644 332221 1 579999999876 2 3
Q ss_pred C-cceEEEecccccc
Q 018565 246 P-EADAAIIKWVLHD 259 (354)
Q Consensus 246 ~-~~D~i~~~~~lh~ 259 (354)
+ +||+|++.-..+.
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 5999999766654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=1.6e-05 Score=89.71 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=65.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-----CCeEEEeec-hHHhhhcccC---CCeEEeecCCCCC---CC-cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP-----RIRGINFDL-PHVVCVAEKC---HGVEHVGGDMFDG---VP-EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~---~~v~~~~~d~~~~---~~-~~D~i~~~~ 255 (354)
+..+||+||+|+|..+..+++... ..+++..|+ +...+.+++. -.++....|..++ .+ .||+|++++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 467999999999987776666543 235777787 5555555531 1233322233332 12 499999999
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCC
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGF 335 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf 335 (354)
+||.-+ +....|+++++.||| ||++++.+........ . ...+.... .. ..+...+.++|.++|.++||
T Consensus 1320 vl~~t~--~~~~~l~~~~~lL~p-~G~l~~~e~~~~~~~g-~-----~~~~~~~~--~r-~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLG--DPAVAVGNMAATLKE-GGFLLLHTLLAGHPLG-E-----MVGFLTSP--EQ-GGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-----------------------CCEEEEEEC-----------------------------------CTTTTSSTTTTE
T ss_pred cccccc--cHHHHHHHHHHhcCC-CcEEEEEecccccccc-c-----cccccccc--cc-cCCcccCHHHHHHHHHhCCC
Confidence 999633 445789999999999 9999998754311000 0 00000000 00 11233567899999999999
Q ss_pred ceeEEEE
Q 018565 336 SRYNITS 342 (354)
Q Consensus 336 ~~~~~~~ 342 (354)
+.+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9877643
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3.1e-05 Score=52.65 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=46.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+..|++.|...+.|+|..|||+.+|++...+.+.|..|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~----~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPS----PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEE----TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCC----CceEeeC
Confidence 556788887544689999999999999999999999999999998755 3788765
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=97.55 E-value=9.9e-05 Score=53.98 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=54.3
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
..++....++.|+..| . ++.|+.+||+.+|+++..+.+.|+.|...|++.... +.|++|+.++
T Consensus 25 ~~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-----g~y~l~~~g~ 87 (96)
T 1y0u_A 25 NYAVTNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-----ERWVVTDAGK 87 (96)
T ss_dssp HHHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEECTTTC
T ss_pred HHHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-----CEEEECCCch
Confidence 3445555678899999 6 799999999999999999999999999999999876 5899998764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00041 Score=59.39 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=63.4
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH---HhhhcccCCCe---EEeec-CCCCCC-Cc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPH---VVCVAEKCHGV---EHVGG-DMFDGV-PE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~---~~~~a~~~~~v---~~~~~-d~~~~~-~~ 247 (354)
..++.+.. .+.+..+|||+||+.|.++...+++-+-..+.+.++.- ..........+ .|..+ ||++.. .+
T Consensus 62 L~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 62 LRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 34555554 37889999999999999999988852111223333311 11111101333 55557 999833 36
Q ss_pred ceEEEeccccc--cCC-hH-HHHHHHHHHHHhcCCCCc-eEEE
Q 018565 248 ADAAIIKWVLH--DWG-DD-ECIKILKNCKEAITKDKG-KVII 285 (354)
Q Consensus 248 ~D~i~~~~~lh--~~~-~~-~~~~~L~~~~~~L~p~gG-~lli 285 (354)
+|+|++-..-. +.. |. ....+|.-+.+.|+| || .+++
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~-gG~~Fvv 181 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR-GPKEFCI 181 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc-CCcEEEE
Confidence 99999854332 111 11 223467777799999 99 6666
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00087 Score=60.06 Aligned_cols=146 Identities=12% Similarity=0.011 Sum_probs=94.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCCCC------C-----cc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFDGV------P-----EA 248 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~------~-----~~ 248 (354)
+...||++|||-=.....+.. .++++++-+|.|.+++..++ ..+..++..|+.+.+ . ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456899999998877655542 12578999999988876542 567889999998631 1 13
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccC--------Cccc
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTN--------KGKE 320 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~g~~ 320 (354)
-++++-.++|++++++..++++.+.+.+.| |+.| +.|.+.++... . ......... ..+...+ ....
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~-gs~l-~~d~~~~~~~~-~--~~~~~~~~~-~~~~~~g~~~~~~l~~~~~ 254 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAV-GSRI-AVETSPLHGDE-W--REQMQLRFR-RVSDALGFEQAVDVQELIY 254 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCT-TCEE-EEECCCTTCSH-H--HHHHHHHHH-HHHC-----------CCTT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCC-CeEE-EEEecCCCCcc-h--hHHHHHHHH-HHHHHcCCcCCCCcccccc
Confidence 478888999999999999999999999888 6654 55655443211 0 000000000 0010001 1122
Q ss_pred -CC-HHHHHHHHHHcCCceeEEEE
Q 018565 321 -RS-LKEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 321 -~t-~~e~~~ll~~aGf~~~~~~~ 342 (354)
++ .++..++|.+.||+.+ .++
T Consensus 255 ~~~~~~~~~~~f~~~G~~~~-~~~ 277 (310)
T 2uyo_A 255 HDENRAVVADWLNRHGWRAT-AQS 277 (310)
T ss_dssp CCTTCCCHHHHHTTTTEEEE-EEE
T ss_pred CCCChHHHHHHHHHCcCccc-cCC
Confidence 25 7789999999999988 444
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00047 Score=66.64 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=72.2
Q ss_pred CCceEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHhhhccc------C--CCeEEeecCCCCC-CC-----cceE
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAF---PRIRGINFDL-PHVVCVAEK------C--HGVEHVGGDMFDG-VP-----EADA 250 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~------~--~~v~~~~~d~~~~-~~-----~~D~ 250 (354)
...+|+|.+||+|.++..+.+.. +..+++++|+ +.+...++. . +++.+..+|.+.. +| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999988874 3578999999 777777653 1 4678999999873 22 4999
Q ss_pred EEeccccc-cCCh--------------------HHHHHHHHHHHHhcC-CCCceEEEEe
Q 018565 251 AIIKWVLH-DWGD--------------------DECIKILKNCKEAIT-KDKGKVIIVE 287 (354)
Q Consensus 251 i~~~~~lh-~~~~--------------------~~~~~~L~~~~~~L~-p~gG~lli~e 287 (354)
|+++-... .|.. ..-..++.++.+.|+ | ||++.++-
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~-gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD-NGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT-TCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC-ceeEEEEe
Confidence 99863321 1210 011358999999999 9 99988754
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.7e-05 Score=70.19 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=52.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----C----CCeEEeecCCCCC--C---CcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----C----HGVEHVGGDMFDG--V---PEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~~~~--~---~~~D~i~~~ 254 (354)
++.+|||+|||+|..+..+++. ..+++++|+ +.+++.++. . ++++++.+|+.+. . ..||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4689999999999999998886 468999999 888887764 1 4799999999872 2 259999983
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00059 Score=56.95 Aligned_cols=89 Identities=10% Similarity=0.096 Sum_probs=60.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCCC-------------
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFDG------------- 244 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~------------- 244 (354)
.+..+|||+||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 356899999985 55555665 45788999997 777666653 34799999985421
Q ss_pred --------------CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 245 --------------VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 245 --------------~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
..+||+|++-.-- ....+..+.+.|+| ||.| ++|.
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~-GG~I-v~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITR-PVTL-LFDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSS-CEEE-EETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCC-CeEE-EEeC
Confidence 1359999985421 12445556788999 8766 5554
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00021 Score=62.47 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=59.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-C-------
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-G------- 244 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~------- 244 (354)
.+++++.+. ..++..+||.+||.|..+..++++ +.+++++|. |.+++.+++ .+|++++.+||.+ +
T Consensus 11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence 456666666 667889999999999999999998 779999999 888877654 2589999999976 2
Q ss_pred CCcceEEEec
Q 018565 245 VPEADAAIIK 254 (354)
Q Consensus 245 ~~~~D~i~~~ 254 (354)
..++|.|++.
T Consensus 87 ~~~vDgIL~D 96 (285)
T 1wg8_A 87 VERVDGILAD 96 (285)
T ss_dssp CSCEEEEEEE
T ss_pred CCCcCEEEeC
Confidence 1358888863
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00053 Score=57.84 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=71.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhh--c-cc--CCCeEEeec-CCCC-CCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCV--A-EK--CHGVEHVGG-DMFD-GVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~--a-~~--~~~v~~~~~-d~~~-~~~~ 247 (354)
..++.+.+. +.+..+|||+||++|.++...+.+..-.++.++|+ +.-.+. . +. -+.|+|..+ |++. +..+
T Consensus 67 L~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 67 LQWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 455666664 67888999999999999998888766567999998 221111 1 11 367999999 9776 4456
Q ss_pred ceEEEeccccccCC---hH-HHHHHHHHHHHhcCCCCceEEE
Q 018565 248 ADAAIIKWVLHDWG---DD-ECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 248 ~D~i~~~~~lh~~~---~~-~~~~~L~~~~~~L~p~gG~lli 285 (354)
+|+|+|--.=..-. ++ ...++|.-+.++|++ + .++|
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~-~fc~ 184 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-N-QFCI 184 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-C-EEEE
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-C-CEEE
Confidence 99999853332111 11 224467777889997 5 4444
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.41 E-value=9.1e-05 Score=55.56 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=53.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHc--CCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhc
Q 018565 39 ELGIAEAVEEKGSPITLNELASAL--KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMR 105 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~--g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~ 105 (354)
+..|++.|.+. ++.|+.+||+.+ |+++..+++.|+.|...|+++..+. +.|++|+.++ +|..
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~r----g~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLAN----GVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECST----TCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCC----ceEEECchHHHHHHH
Confidence 45678888654 799999999999 9999999999999999999998863 6899999986 4443
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=57.59 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=70.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhh---ccc--CCCeEEeec-CCCC-CCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCV---AEK--CHGVEHVGG-DMFD-GVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~~v~~~~~-d~~~-~~~~ 247 (354)
..++.+.+. +.+..+|||+||++|.++...+....-..+.++|+ ..-.+. .+. -.-|.++.+ |++. +..+
T Consensus 83 L~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 83 LRWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 455556555 67778999999999999998877665557899998 221110 111 134888887 8776 4455
Q ss_pred ceEEEeccccccCChH-----HHHHHHHHHHHhcCCCC-ceEEE
Q 018565 248 ADAAIIKWVLHDWGDD-----ECIKILKNCKEAITKDK-GKVII 285 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~-----~~~~~L~~~~~~L~p~g-G~lli 285 (354)
+|+|+|--. ..-+.+ ...++|.-+.++|++ | |.++|
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~-~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR-GPREFCV 202 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT-CCCEEEE
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc-CCCcEEE
Confidence 999988443 222221 224577777899998 7 66655
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00033 Score=51.77 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=51.8
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
..+|..-.++.|+..|.. ++.|+.|||+.+|+++..+.+.|+.|...|++..... +....|++|+.
T Consensus 17 ~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~-g~~~~y~l~~~ 82 (102)
T 3pqk_A 17 LKTLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRN-IKQIFYRLTEA 82 (102)
T ss_dssp HHHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECS-SSCCEEEECSS
T ss_pred HHHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEECcH
Confidence 345555567778888865 7999999999999999999999999999999987652 01234777764
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=49.54 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=50.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcc-cHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPS-LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
.+-.|++.|... +|.|+.+||+.+|+++. .+++.|..|...|+++..+. |...|++|+.++
T Consensus 12 ~~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~--gRP~w~LT~~g~ 73 (79)
T 1xmk_A 12 IKEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGT--TPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECS--SSCEEEECHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCC--CCCCeEeCHhHH
Confidence 355677778765 79999999999999998 99999999999999986652 124799998774
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00028 Score=51.71 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=52.5
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
..+|....++.|+..|.+ ++.|+.|||+.+|+++..+.+.|+.|...|++...... ....|++++.
T Consensus 17 ~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g-~~~~y~l~~~ 82 (98)
T 3jth_A 17 LKAMANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA-QTVYYTLKSE 82 (98)
T ss_dssp HHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT-TCCEEEECCH
T ss_pred HHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEECHH
Confidence 345555677888999986 79999999999999999999999999999999877520 0224777654
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00036 Score=61.49 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=47.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|...+++.|+.|||+.+|++..-+.|+|..|+..|++++++ +++|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~----~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA----DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT----TSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC----CCcEEehHHH
Confidence 45788887654689999999999999999999999999999999886 3789999753
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00029 Score=53.61 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=53.4
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.+|.--.++.|+..|.+ +|.|+.+||+.+|+++..+.+.|+.|...|++...... ....|++++.+
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g-r~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG-RVRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC-CEEEEEECHHH
Confidence 445556678888888875 79999999999999999999999999999999876520 02348777654
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0005 Score=52.65 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=51.3
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+.+|....++.|+..|... ++.|+.+||+.+|+++..+.+.|+.|...|++...... ....|++++.
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~ 102 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG-KLALYSLGDE 102 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CCEEEESCH
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC-CEEEEEECHH
Confidence 4455555678899988743 79999999999999999999999999999999876520 0124777754
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00034 Score=52.69 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=49.4
Q ss_pred HHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 34 VKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 34 l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+....++.|+..|.. ++.|+.+||+.+|+++..+.+.|+.|...|+++..... ....|++|+.+
T Consensus 18 l~~~~r~~IL~~L~~--~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g-r~~~y~l~~~~ 81 (114)
T 2oqg_A 18 LSDETRWEILTELGR--ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG-REIRYRALGAE 81 (114)
T ss_dssp TTCHHHHHHHHHHHH--SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHH
T ss_pred hCChHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC-CEEEEEechHH
Confidence 333456677777754 79999999999999999999999999999999876520 01238888765
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00077 Score=47.12 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=48.6
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
.....|++.|.. .+.|+.|||+.+|++...+++.|..|...|++...+.+ +..|+++...
T Consensus 17 ~~~~~IL~lL~~--~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~--PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGI--EGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDI--PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSS--STEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSS--SCEEESCC--
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCC--CCcceeccCc
Confidence 345667778876 34999999999999999999999999999999988632 5678887653
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0013 Score=46.22 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=47.1
Q ss_pred HHcChhhhhhhCCC---CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccch
Q 018565 38 VELGIAEAVEEKGS---PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRR 102 (354)
Q Consensus 38 ~~lglf~~L~~~~~---~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~ 102 (354)
.+..|++.|... + ++|+.+||+++|++...+.+.|.-|...|++...+.. ++.|.+.+....
T Consensus 11 ~~~~IL~~L~~~-~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~--~~~W~i~~~~~~ 75 (81)
T 1qbj_A 11 QEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGT--PPLWKIAVSTQA 75 (81)
T ss_dssp HHHHHHHHHHHH-CTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSS--SCEEEEC-----
T ss_pred HHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCC--CCeeEEeCcHHh
Confidence 355577777654 4 7999999999999999999999999999999876521 478888776543
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0005 Score=51.18 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=48.6
Q ss_pred HHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 33 VVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 33 ~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+|..-.++.|+..|.. ++.|+.+||+.+|+++..+.+.|+.|...|++...... ....|++++.
T Consensus 22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~ 85 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG-QSMIYSLDDI 85 (106)
T ss_dssp HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSH
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence 3444456677777775 78999999999999999999999999999999876520 0113666643
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00086 Score=46.69 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=47.0
Q ss_pred HcChhhhhhhCCC---CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 39 ELGIAEAVEEKGS---PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 39 ~lglf~~L~~~~~---~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
+..|++.|... + ++|+.|||+++|++...+.+.|.-|...|++...+. .++.|..++
T Consensus 16 ~~~IL~~L~~~-~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~--~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG--TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHH-CSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS--SSCEEEECC
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC--CCCceEecC
Confidence 45677777654 4 799999999999999999999999999999988762 246777665
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0006 Score=49.79 Aligned_cols=66 Identities=8% Similarity=0.003 Sum_probs=50.7
Q ss_pred HHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 33 VVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 33 ~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
++....++.|+..|.. +++.|..+||+.+|+++..+.+.|+.|...|++..... +....|++|+.+
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~-~r~~~y~l~~~~ 85 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD-AQRILYSIKNEA 85 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC-SSCEEEEECCHH
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChHH
Confidence 3444566778888876 25999999999999999999999999999999987652 012247777653
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00066 Score=48.00 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=42.7
Q ss_pred HHcChhhhhhhCC-CCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKG-SPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~-~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
-+..|++.|...+ ++.|++||++.+ +++..-+.|.|+.|...|++.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 4566888887643 589999999999 999999999999999999998775
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00032 Score=52.49 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=48.4
Q ss_pred HHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 33 VVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 33 ~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+|..-.++.|+..|.. ++.|+.|||+.+|+++..+.+.|+.|...|++...... ....|++++.
T Consensus 21 al~~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g-r~~~y~l~~~ 84 (108)
T 2kko_A 21 ALANGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREG-TRQYYRIAGE 84 (108)
T ss_dssp HHTTSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEEESCH
T ss_pred HhCCHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence 3334455667777765 79999999999999999999999999999999876520 0124666654
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00058 Score=51.31 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCC--HHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCCCce
Q 018565 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPIT--LNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMA 93 (354)
Q Consensus 17 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t--~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~ 93 (354)
+...+++.+.+.|...+|. .|.. ++.+ +.||++.+ |+++..+.+.|+.|...|+|++... ....
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~--r~~~ 82 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG--QITT 82 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES--SSEE
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec--CcEE
Confidence 3445566666677665554 3443 6877 99999999 9999999999999999999998741 1257
Q ss_pred EecCcccchhhc
Q 018565 94 FQQTPLSRRLMR 105 (354)
Q Consensus 94 y~~t~~~~~l~~ 105 (354)
|++|+.|+.+..
T Consensus 83 y~LT~~G~~l~~ 94 (111)
T 3df8_A 83 YALTEKGMNVRN 94 (111)
T ss_dssp EEECHHHHHHHH
T ss_pred EEECccHHHHHH
Confidence 999998875543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.032 Score=55.67 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=102.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCC--------CCeEEEeechHHhhhccc------------------------------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFP--------RIRGINFDLPHVVCVAEK------------------------------ 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 230 (354)
+...||-+|||.=.....+...+| ++++.-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 568999999999999999987755 678888888888764221
Q ss_pred CCCeEEeecCCCCC--C-----------Cc-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCC
Q 018565 231 CHGVEHVGGDMFDG--V-----------PE-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGV 296 (354)
Q Consensus 231 ~~~v~~~~~d~~~~--~-----------~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~ 296 (354)
.++.+++..|+.+. + ++ .-++++-.+|.+++.+.+.++|+.+.+ + | ++.+++.|.+.+....
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~-~~~~~~~e~~~~~~~~- 262 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E-NSHFIILEQLIPKGPF- 262 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S-SEEEEEEEECCTTCTT-
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C-CceEEEEEeecCCCCC-
Confidence 14889999999872 1 11 346788899999999999999999985 4 6 7888888988765333
Q ss_pred CcchhhhhhhccHHhhc--cc--CCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 297 DNKFKSVRLMLDMVMMA--HT--NKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 297 ~~~~~~~~~~~~l~~~~--~~--~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
+. + ...+--+... .. .-....+.++..+.|.+.||+.+....+
T Consensus 263 d~-f---~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 263 EP-F---SKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp SH-H---HHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred Ch-H---HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 21 2 1111111111 00 0113347899999999999998776654
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00057 Score=54.42 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
.+.+|.--.++.|+..|.. ++.|+.+||+.+|+++..+.+.|+.|...|+|+..... ....|++|+.+
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~G-r~~~y~lt~~~ 118 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDG-RFRYYRLDPQG 118 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHH
Confidence 4667777789999999985 79999999999999999999999999999999876520 01248888754
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0014 Score=48.79 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=53.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCC--CceEe
Q 018565 19 VEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQ 95 (354)
Q Consensus 19 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~ 95 (354)
..+++.+.+.|...+| ..|.. ++.+..|||+.+ |+++..+.+.|+.|...|++++....++ .-.|.
T Consensus 5 ~~~l~~l~~~~~~~IL---------~~L~~--~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~ 73 (107)
T 2hzt_A 5 EATLEVIGGKWKXVIL---------XHLTH--GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYE 73 (107)
T ss_dssp HHHHHHHCSTTHHHHH---------HHHTT--CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred HHHHHHHcCccHHHHH---------HHHHh--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE
Confidence 3444455555544444 44443 799999999999 9999999999999999999987752111 12499
Q ss_pred cCcccchhh
Q 018565 96 QTPLSRRLM 104 (354)
Q Consensus 96 ~t~~~~~l~ 104 (354)
+|+.++.+.
T Consensus 74 LT~~G~~l~ 82 (107)
T 2hzt_A 74 LSEYGRSLE 82 (107)
T ss_dssp ECTTGGGGH
T ss_pred ECccHHHHH
Confidence 998876444
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0025 Score=49.73 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=47.4
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
..++.|+..|... ++.|..+||+.+++++..+.++++.|...|++++.....+ .-.+.+|+.|+.+.
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 5677788888875 6999999999999999999999999999999998652100 11367887776443
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00055 Score=59.80 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=49.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|....++.|+.|||+.+|+++.-+.|+|+.|+..|+++++.. .++|++++..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~---~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEG---ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSS---SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC---CCcEEcCHHH
Confidence 457788875336899999999999999999999999999999998863 3799998753
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=48.08 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=47.4
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
|+..+.. + ++..+||..+|++++.++..++.|...|+++... +.|.+|+.|+.+.
T Consensus 13 IL~~i~~--~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~-----~~~~LT~kG~~~l 67 (95)
T 1r7j_A 13 ILEACKS--G-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG-----KQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHTT--C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEECHHHHHHH
T ss_pred HHHHHHc--C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC-----CeeEEChhHHHHH
Confidence 4455543 5 9999999999999999999999999999999987 6799999997444
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00094 Score=57.62 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=49.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
+.|++.|...+++.|+.|||+.+|+++..+.|+|+.|...|++++... +++|++++...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~---~~~Y~lg~~~~ 67 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGP---AGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGG---GCEEEECSHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---CCeEEECHHHH
Confidence 456777765435799999999999999999999999999999998753 37899997643
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0026 Score=56.01 Aligned_cols=92 Identities=16% Similarity=0.049 Sum_probs=64.8
Q ss_pred CCceEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hH--------------------------Hhhhccc------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAF-----PRIRGINFDL-PH--------------------------VVCVAEK------ 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~------ 230 (354)
.+.+|||+|+..|..+..+++.. ++.+++++|. .. ..+.+++
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 46899999999999988887653 4778988884 11 1112222
Q ss_pred --CCCeEEeecCCCC--C-CC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 231 --CHGVEHVGGDMFD--G-VP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 231 --~~~v~~~~~d~~~--~-~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.++|+++.||+.+ + .+ ++|+|++-.-.+ +.....|..+.+.|+| ||.|++
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p-GGiIv~ 242 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV-GGYVIV 242 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE-EEEEEE
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC-CEEEEE
Confidence 2789999999976 2 32 489988865321 2356789999999999 775544
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00097 Score=46.31 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=39.0
Q ss_pred hhhhhhhC-----CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEK-----GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~-----~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|++.|... |+|.|+.|||+.+|+++..+++-|..|...|++....
T Consensus 9 IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 9 IISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 45555443 5799999999999999999999999999999999885
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0014 Score=56.78 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=48.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|...+++.|+.|||+.+|+++..+.|+|+.|...|+++... ++.|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~----~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK----DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT----TSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECC----CCcEEECHHH
Confidence 45677776543589999999999999999999999999999999883 3889998753
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0023 Score=49.48 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=59.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCC--Cce
Q 018565 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMA 93 (354)
Q Consensus 17 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~ 93 (354)
+....++++.+-|...+|... .. ++.+..||++.+ |+++..+.+.|+.|...|+|++.....+ .-.
T Consensus 15 pi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~ 83 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVE 83 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEE
T ss_pred cHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEE
Confidence 355667777777776666543 23 799999999999 9999999999999999999988742111 125
Q ss_pred EecCcccchhhc
Q 018565 94 FQQTPLSRRLMR 105 (354)
Q Consensus 94 y~~t~~~~~l~~ 105 (354)
|++|+.|+.+..
T Consensus 84 y~LT~~G~~l~~ 95 (131)
T 4a5n_A 84 YSLTEFGRTLEP 95 (131)
T ss_dssp EEECTTGGGGHH
T ss_pred EEECHhHHHHHH
Confidence 999999986664
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=57.29 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=50.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
+.|++.|...+++.|+.|||+.+|+++.-+.|+|+.|...|+++.++ ++|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-----~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-----GRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-----CEEEEcHHHHHHH
Confidence 45677776434689999999999999999999999999999999875 8999998754343
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0045 Score=55.39 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=62.2
Q ss_pred hHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-C-----
Q 018565 175 AMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-G----- 244 (354)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~----- 244 (354)
+.+++++.+. ..++..+||..+|.|..+..++++. |+.+++++|. +.+++.++. .+|++++.++|.+ .
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~ 122 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAE 122 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHH
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 3567777777 6788999999999999999999884 7889999999 888887754 5789999998876 2
Q ss_pred --CC-cceEEEec
Q 018565 245 --VP-EADAAIIK 254 (354)
Q Consensus 245 --~~-~~D~i~~~ 254 (354)
++ ++|.|++.
T Consensus 123 ~g~~~~vDgILfD 135 (347)
T 3tka_A 123 RDLIGKIDGILLD 135 (347)
T ss_dssp TTCTTCEEEEEEE
T ss_pred cCCCCcccEEEEC
Confidence 12 36777664
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0027 Score=44.58 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=39.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
..|++.|... ++.|..|||+.+|+++..+++.|+.|...|++...
T Consensus 3 ~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3466777654 68999999999999999999999999999999854
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0018 Score=49.45 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=49.4
Q ss_pred HHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 33 VVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 33 ~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+|....++.|+..|.+ ++.++.+||+.+|+++..+.+.|+.|...|++...... ....|++++.
T Consensus 42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~g-r~~~y~l~~~ 105 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQG-RHVYYQLQDH 105 (122)
T ss_dssp HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSH
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence 3444467788888875 79999999999999999999999999999999876520 0123666643
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=56.83 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=47.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|....++.|+.|||+.+|+++.-+.|+|+.|...|+++.+. +++|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~----~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRA----DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECT----TSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC----CCeEEecHHH
Confidence 45677775423689999999999999999999999999999999886 2589998753
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0085 Score=54.63 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=72.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------CCCeEEeecCCCC-C--CC-cce
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------CHGVEHVGGDMFD-G--VP-EAD 249 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~--~~-~~D 249 (354)
..++.+|||+-+|.|.-+..+++..++-.++..|+ +.-+...++ ..++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56788999999999999999998777667889998 544443321 3578888888776 2 23 499
Q ss_pred EEEeccc--------c-------ccCChHHH-------HHHHHHHHHhcCCCCceEEEEeeeeC
Q 018565 250 AAIIKWV--------L-------HDWGDDEC-------IKILKNCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 250 ~i~~~~~--------l-------h~~~~~~~-------~~~L~~~~~~L~p~gG~lli~e~~~~ 291 (354)
.|++--. + ..+..++. .++|+++.+.||| ||+|+-+.-.+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp-GG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP-GGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE-EEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC-CcEEEEEeCCCc
Confidence 9987211 1 11222221 4789999999999 998887654433
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=56.79 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=48.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+.|++.|....++.|+.|||+.+|+++.-+.|+|+.|...|+++.++ ++|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-----~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-----SAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-----SEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-----CEEEEcHHH
Confidence 45677776433689999999999999999999999999999999874 899998754
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0029 Score=43.98 Aligned_cols=43 Identities=5% Similarity=0.197 Sum_probs=39.5
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
|.+.|... +.+++.|||+.+++++.-++|-|+.|...|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56777764 79999999999999999999999999999999988
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=47.72 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=53.0
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-C-CCceEecCcccc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-Q-GSMAFQQTPLSR 101 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~-~~~~y~~t~~~~ 101 (354)
.++....++.|+..|... ++.|..+||+.+|+++..+.+.|+.|...|+++..... + ....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 455566777888888643 69999999999999999999999999999999854310 0 023588887764
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0021 Score=49.78 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCC--CceE
Q 018565 18 KVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAF 94 (354)
Q Consensus 18 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y 94 (354)
...+++++.+.|...+ +..|.. ++.+..||++.+ |+++..+.+.|+.|...|+|++....++ .-.|
T Consensus 25 ~~~~l~~l~~~w~l~I---------L~~L~~--g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y 93 (131)
T 1yyv_A 25 SREVLKHVTSRWGVLI---------LVALRD--GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEY 93 (131)
T ss_dssp HHHHHHHHHSHHHHHH---------HHHGGG--CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEE
T ss_pred HHHHHHHHcCCcHHHH---------HHHHHc--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEE
Confidence 4445555555555444 344443 799999999999 7999999999999999999987642110 1259
Q ss_pred ecCcccchhh
Q 018565 95 QQTPLSRRLM 104 (354)
Q Consensus 95 ~~t~~~~~l~ 104 (354)
++|+.++.+.
T Consensus 94 ~LT~~G~~l~ 103 (131)
T 1yyv_A 94 SLTPLGEQVS 103 (131)
T ss_dssp EECHHHHHHH
T ss_pred EECccHHHHH
Confidence 9999886544
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0025 Score=49.85 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
++.|+.+||+.+|+++..+.+.|+.|...|++.... .+.|.+|+.++.+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK----YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee----CceEEEchhHHHHH
Confidence 689999999999999999999999999999999876 37899999886443
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0025 Score=47.87 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCC--CceE
Q 018565 18 KVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAF 94 (354)
Q Consensus 18 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y 94 (354)
...+++++.+.|...+| ..|.. ++.+..+||+.+ |+++..+.+.|+.|...|+++......+ .-.|
T Consensus 12 ~~~~l~~l~~~~~~~IL---------~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 12 INLALSTINGKWKLSLM---------DELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHHTTCSTTHHHHH---------HHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHHHHcCccHHHHH---------HHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 34455555555554444 44444 689999999999 9999999999999999999987752111 1138
Q ss_pred ecCcccchhh
Q 018565 95 QQTPLSRRLM 104 (354)
Q Consensus 95 ~~t~~~~~l~ 104 (354)
.+|+.|+.+.
T Consensus 81 ~LT~~G~~~~ 90 (112)
T 1z7u_A 81 TLTPEGYALY 90 (112)
T ss_dssp EECHHHHHHH
T ss_pred EECHhHHHHH
Confidence 9998876443
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=55.33 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=52.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..|||+.+|+++..+.|.|+.|...|++++.+. ...|++|+.++.+.
T Consensus 153 ~~~~IL~~L~~~-~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r---~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET-KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGK---DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH-TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEEECHHHHHHH
Confidence 345566666543 6899999999999999999999999999999998753 37899999886543
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=45.03 Aligned_cols=44 Identities=7% Similarity=0.213 Sum_probs=39.8
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|.+.|... +.+++.|||+.+++++.-++|-|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56777764 799999999999999999999999999999998874
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0034 Score=48.59 Aligned_cols=66 Identities=11% Similarity=0.244 Sum_probs=50.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.+.|+.|...|++...... |+ .-.|.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS-GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 456677777664 68999999999999999999999999999999876421 10 12377888776443
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=46.47 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=49.1
Q ss_pred HcChhhhhhhCCCCCCHHHH----HhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNEL----ASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~el----A~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
++.++..|... ++.|..+| |+.+++++..+.++|+.|...|++++.... ....|.+|+.|+.+.
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~-r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER-GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC-CceEEEECHHHHHHH
Confidence 34556666553 68999999 999999999999999999999999876410 024588888876444
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0066 Score=47.12 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=52.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.+.|+-|...|+++..... |+ ...|.+|+.++.+.
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456677788654 68999999999999999999999999999999877421 11 22488898887554
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.011 Score=51.57 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=61.2
Q ss_pred cCCCceEEEecC------CccHHHHHHHHHCCC-CeEEEeechHHhhhcccCCCeEEeecCCCC-C-CCcceEEEeccc-
Q 018565 187 FDGIETLVDIGG------NDGTTLRTLTKAFPR-IRGINFDLPHVVCVAEKCHGVEHVGGDMFD-G-VPEADAAIIKWV- 256 (354)
Q Consensus 187 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~-~~~~D~i~~~~~- 256 (354)
.+.+.+|||+|+ -.|.. .+.+..|. ..++.+|+.++...+ . .++.||+.+ . ..++|+|+.-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 467899999996 56663 34455776 689999985544322 2 348899776 2 345999987322
Q ss_pred --cccCC------hHHHHHHHHHHHHhcCCCCceEEE
Q 018565 257 --LHDWG------DDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 257 --lh~~~------~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
--+.+ ..-+..++.=+.+.|+| ||.+++
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp-GGsFvV 215 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL-GGSIAV 215 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE-EEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC-CCEEEE
Confidence 11111 22467778888899999 998887
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0028 Score=47.12 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCC--Cce
Q 018565 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMA 93 (354)
Q Consensus 17 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~ 93 (354)
....+++.+.+.|...+|. .|.. ++.+..||++.+ |+++..+.+.|+.|...|++++.....+ .-.
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~ 82 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVE 82 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEE
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeE
Confidence 4456666666666655544 3433 799999999999 5999999999999999999987652111 124
Q ss_pred EecCcccchhh
Q 018565 94 FQQTPLSRRLM 104 (354)
Q Consensus 94 y~~t~~~~~l~ 104 (354)
|.+|+.|+.+.
T Consensus 83 y~LT~~G~~l~ 93 (107)
T 2fsw_A 83 YSLTPLGEKVL 93 (107)
T ss_dssp EEECHHHHTTH
T ss_pred EEECccHHHHH
Confidence 99999886444
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.03 Score=44.60 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=51.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.|+.+.
T Consensus 47 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK-PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 445678888765 6999999999999999999999999999999987752111 11378888876444
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.026 Score=54.38 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=69.6
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHhhhccc------CCCeE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-------------PRIRGINFDL-PHVVCVAEK------CHGVE 235 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~v~ 235 (354)
++.+++.+. ...+.+|+|-.||+|.++....+.. ....+.|+|+ +.+...++. .+.-.
T Consensus 206 v~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 206 VRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 344444444 3456799999999999988765432 1356899998 766666552 23445
Q ss_pred EeecCCCC-CC------CcceEEEecccccc---------CC-----hHHHHHHHHHHHHhcC-------CCCceEEEEe
Q 018565 236 HVGGDMFD-GV------PEADAAIIKWVLHD---------WG-----DDECIKILKNCKEAIT-------KDKGKVIIVE 287 (354)
Q Consensus 236 ~~~~d~~~-~~------~~~D~i~~~~~lh~---------~~-----~~~~~~~L~~~~~~L~-------p~gG~lli~e 287 (354)
+..+|.+. +. ..||+|+.+-.+.. ++ .+....++..+.+.|| | ||++.++-
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~-gGr~avVl 362 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN-GGRAAVVV 362 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS-CCEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC-CceEEEEe
Confidence 67788776 31 14999999755531 11 1122356777777776 7 89888864
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0042 Score=48.79 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=49.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.++..|... +++|..+||+.+++++..+.+.++-|...|+++..... |. ...+.+|+.|+.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 456677778764 69999999999999999999999999999999877421 10 13477887775443
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0033 Score=49.59 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=48.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
.++.|+..|...++++|..+||+.+++++..+.++++-|...|++++..... ++ .+.+|+.|+.+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~-D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPS-DRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC------------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcc-ccchheeeECHHHHHHH
Confidence 4566777776544578999999999999999999999999999998865210 12 277888776444
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.008 Score=46.23 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
++.|+.+||+.+|+++..++++|+.|...|+++.... ..|.|+++..
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g--~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG--AYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCC--CCCceEeCCC
Confidence 6899999999999999999999999999999987641 0367887754
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0036 Score=49.41 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=54.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CCCceEecC
Q 018565 19 VEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QGSMAFQQT 97 (354)
Q Consensus 19 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~y~~t 97 (354)
.+.++.+.+.|...+|.. |.. ++.+..||++.+|+++..+.+.|+.|...|++++.... +..-.|++|
T Consensus 15 ~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT 83 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVRD---------AFE--GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLT 83 (146)
T ss_dssp TTTHHHHCSSSHHHHHHH---------HHT--TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEEC
T ss_pred HHHHHHhCCchHHHHHHH---------HHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEEC
Confidence 345555556665555443 333 68999999999999999999999999999999887521 111258999
Q ss_pred cccchhh
Q 018565 98 PLSRRLM 104 (354)
Q Consensus 98 ~~~~~l~ 104 (354)
+.++.+.
T Consensus 84 ~~G~~l~ 90 (146)
T 2f2e_A 84 DKGRALF 90 (146)
T ss_dssp HHHHTTH
T ss_pred chHHHHH
Confidence 8876444
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=46.52 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=50.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceee--ccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKE--VPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~--~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++++-|...|++++ .....+ .-.+.+|+.++.+.
T Consensus 42 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST-PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 456677778764 6899999999999999999999999999999998 321100 12488888876443
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0037 Score=45.74 Aligned_cols=64 Identities=9% Similarity=0.105 Sum_probs=46.1
Q ss_pred HHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 33 VVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 33 ~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+|....++.|+..|... ++.|+.|||+.+|+++..+++.|+.|... ++..... +....|++++.
T Consensus 23 aL~~~~Rl~IL~~l~~~-~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~-gr~~~y~l~~~ 86 (99)
T 2zkz_A 23 TMAHPMRLKIVNELYKH-KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ-GLEIYYSINNP 86 (99)
T ss_dssp HHCSHHHHHHHHHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE-TTEEEEECCCH
T ss_pred HhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe-CcEEEEEEChH
Confidence 33444566666444332 79999999999999999999999999999 9876542 00124777754
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0054 Score=47.72 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=43.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
++.|..+||+.+|+++..+.+.|+.|...|+++... +.|.+|+.++.+
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~-----~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE-----DGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC-----CeEEEChhHHHH
Confidence 689999999999999999999999999999999876 679999887644
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.01 Score=47.79 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=50.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
.++.|+..|...++++|..+||+.+++++..+.++++-|...|+|++....++ .-.+.+|+.|+.+..
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 45667777765336899999999999999999999999999999998752110 124788888764443
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.005 Score=47.66 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=50.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+|+++..+.+.|+.|...|+++...... ++ .|.+|+.++.+.
T Consensus 39 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~-d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET-GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPD-DGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETT-EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCC-CCCeeeeEECHhHHHHH
Confidence 456678888654 699999999999999999999999999999998863110 12 377888776443
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.011 Score=44.54 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=44.5
Q ss_pred HHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 33 VVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 33 ~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++....++.|+..|.+ ++.|+.+||+.+|+++..+.+.|+.|...|++....
T Consensus 28 ~l~~~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 28 ALATPSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3444567778888876 689999999999999999999999999999997664
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0073 Score=46.83 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=49.9
Q ss_pred HHcChhhhhhhCCC-CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGS-PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~-~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|...++ ++|..+||+.+++++..+.+.++.|...|+++.....++ .-.+.+|+.++.+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 34556777766422 799999999999999999999999999999987642110 11477888776443
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0064 Score=46.97 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=49.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
.++.++..|... ++.|..+||+.+++++..+.+.++.|...|+++..... .++ .|.+|+.++.+.
T Consensus 30 ~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~-~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP-ENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC-CCceeEEeeECHhHHHHH
Confidence 445567777664 79999999999999999999999999999999885411 012 277787775443
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0056 Score=47.73 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++++.|...|++++.... |. .-.+.+|+.|+.+.
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 456677777654 79999999999999999999999999999999876421 10 12478888876444
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.037 Score=42.98 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=50.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.++..|. . ++.|..+||+.+++++..+.+.|+.|...|+++..... |. .-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 4566777777 3 79999999999999999999999999999999876421 10 12377888776443
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0066 Score=43.69 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=50.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHh-HcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELAS-ALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~-~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
.++.|+-.|.+. ++.|+.+||+ .++++...+.|-++.|...|+++.++ ++ +.+|+.|+.+..
T Consensus 17 ~QfsiL~~L~~~-~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe~~~----~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 17 KTATILITIAKK-DFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVEKSG----DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHHS-TTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEEEET----TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCeecCC----CC-eeeCHhHHHHHH
Confidence 345667777775 5999999999 99999999999999999999999434 24 999998874443
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0097 Score=47.08 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=46.4
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
..+|++.+.+... .. ++.|+++||+.+++++..++++|..|...|+++.... .|.|+++..
T Consensus 14 ~yAl~~L~~La~~---~~--~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG---~GGy~L~~~ 74 (149)
T 1ylf_A 14 SIAVHILSILKNN---PS--SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG---PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHS---CG--GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred HHHHHHHHHHHhC---CC--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC---CCceEeCCC
Confidence 3456666555432 22 6899999999999999999999999999999987652 377888754
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0065 Score=41.23 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
.+-.|++.|.++|.|++..+||+.+|++..-+...|..|-..|.+....+ -.|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SPkR----Cyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSP----ATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEET----TEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCCC----ceeeCC
Confidence 35567888887778999999999999999999999999999999998875 467765
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0095 Score=46.42 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=49.5
Q ss_pred HcChhhhh-hhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 39 ELGIAEAV-EEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L-~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
++.|+..| .. .++.|..+||+.+++++..+.+.++-|...|+++......+ .-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARH-RDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHC-SSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 45577777 44 37999999999999999999999999999999988642100 12377887776443
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.008 Score=43.48 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=43.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccch
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRR 102 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~ 102 (354)
++.+..+||+.++++...+.|.|..|...|+++.....|+-+...+|+.++.
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~ 86 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAA 86 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHH
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHH
Confidence 6889999999999999999999999999999998654333345777877753
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.008 Score=47.81 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=49.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|....+++|..+||+.+++++..+.++++-|...|++++.... |. .-.+.+|+.|+.+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 456688888322379999999999999999999999999999999886421 00 11377888776443
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.032 Score=43.78 Aligned_cols=64 Identities=6% Similarity=0.166 Sum_probs=47.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec---cCCCC-CceEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV---PTSQG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~---~~~~~-~~~y~~t~~~~~l~ 104 (354)
++.++..| .. ++.|..+||+.+++++..+.++++.|...|+++.. ++.|. .-.+.+|+.|+.+.
T Consensus 40 q~~iL~~l-~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI-EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH-SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 45578888 43 79999999999999999999999999999999973 22110 11367777775443
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0073 Score=47.20 Aligned_cols=66 Identities=6% Similarity=0.014 Sum_probs=51.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.++++-|...|++++.....+ .-.+.+|+.|+.+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 456677788654 6899999999999999999999999999999997642110 12488888886543
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0074 Score=47.52 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=50.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+|+++..+.+.|+-|...|+++..... |. .-.+.+|+.++.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLT-PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 456677777764 68999999999999999999999999999999886421 10 12477888776433
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0055 Score=46.79 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHcChhhhhhhCCCC-CCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSP-ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~-~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|...++| +|+.|||+.+++++..+.|.|+.|...|++.+..
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 355667777654456 9999999999999999999999999999998763
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.008 Score=46.55 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHcChhhhhhhCC-CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKG-SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~-~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.++..|...+ ++.|..+||+.+++++..+.++++-|...|++++.... |. .-.+.+|+.|+.+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 4566777776542 48999999999999999999999999999999876421 10 12377888776444
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.016 Score=52.63 Aligned_cols=83 Identities=8% Similarity=0.008 Sum_probs=58.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC-C-C----Cc-----------
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD-G-V----PE----------- 247 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~-~-~----~~----------- 247 (354)
+...|||||.|.|.++..|+++...-+++++++ +..+...++ .++++++.+|+++ + + .+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~ 137 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSS 137 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHhhccccccccccccc
Confidence 357899999999999999998744457888888 666555543 5789999999976 3 1 11
Q ss_pred ----ceEEEeccccccCChHHHHHHHHH
Q 018565 248 ----ADAAIIKWVLHDWGDDECIKILKN 271 (354)
Q Consensus 248 ----~D~i~~~~~lh~~~~~~~~~~L~~ 271 (354)
-.+.++.|.-++.+.+-..++|..
T Consensus 138 ~~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 138 DHINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp TSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred ccCCCceEEEEECCCchHHHHHHHHHHh
Confidence 124566676666666555566654
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0045 Score=44.82 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=45.4
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCccc-HHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSL-LQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
++..|...+++.|..+||+.+++++.. +.+.|+.|...|+++....+.-.-.+.+|+.|+.+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 444454432389999999999999999 999999999999998432100012477888776444
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0095 Score=46.56 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=51.1
Q ss_pred HHHcChhhhhhh-CCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 37 AVELGIAEAVEE-KGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 37 a~~lglf~~L~~-~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
..++.|+..|.. . ++.|..+||+.+|+++..+.+.++.|...|++++.... |+ .-.+.+|+.|+.+.
T Consensus 35 ~~~~~iL~~l~~~~-~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG-GDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 355677888875 4 79999999999999999999999999999999886421 10 12377888776443
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.018 Score=45.58 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=49.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhhc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLMR 105 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~~ 105 (354)
++.++..|...+++.+..+||+.+++++..+.++++-|...|++++....+ ++ .+.+|+.|+.+..
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~-DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSAN-DRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS-CTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCC-CCcchhhhcCHHHHHHHH
Confidence 345566665444567889999999999999999999999999998765211 22 3788888864443
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0079 Score=46.86 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=49.8
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
++.++..|... +++|..+||+.+++++..+.+.++-|...|++.......+ .-.+.+|+.++.+.
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 45567777664 6899999999999999999999999999999988642100 12377888776443
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.021 Score=45.00 Aligned_cols=65 Identities=11% Similarity=0.192 Sum_probs=49.6
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
++.|+..|... ++.|..+||+.+++++..+.+.|+-|...|+++..... |. .-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 45577777654 68999999999999999999999999999999886421 10 11377887775443
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0071 Score=46.73 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.++..|... ++.|..+||+.+++++..+.+.++-|...|+++......+ .-.+.+|+.|+.+.
T Consensus 35 ~~~~iL~~l~~~-~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 345567777653 6899999999999999999999999999999988642110 11378888876444
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.023 Score=45.18 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=50.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++++-|...|++++.....+ .-.+.+|+.|+.+.
T Consensus 54 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY-GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 455677778654 6999999999999999999999999999999987752110 12478888876444
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.014 Score=45.41 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=50.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++ |..+||+.+++++..+.+.++.|...|++++.... .++ .+.+|+.|+.+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDS-KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCC-CCCceEEEEECHHHHHHH
Confidence 456788888774 45 99999999999999999999999999999887521 011 388888876444
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.057 Score=42.40 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=58.2
Q ss_pred HHcChhhhhhhCC-CCCCHHHHHhHcC-CCcccHHHHHHHHhccCceeeccCCC---CCc----eEecCcccc-hhhcCC
Q 018565 38 VELGIAEAVEEKG-SPITLNELASALK-CDPSLLQRIMRFLIHLKFFKEVPTSQ---GSM----AFQQTPLSR-RLMRHG 107 (354)
Q Consensus 38 ~~lglf~~L~~~~-~~~t~~elA~~~g-~~~~~l~~lL~~L~~~g~l~~~~~~~---~~~----~y~~t~~~~-~l~~~~ 107 (354)
.++.|+..|.... +..|+++|++.++ +++..+.+.|+.|+..|++++....+ +.| .|++|+.++ .|....
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y~ 109 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAVS 109 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHhH
Confidence 4555666664421 4589999999999 99999999999999999998653211 012 699999986 443321
Q ss_pred CcchHHHHHHhcCchhhhhhhhHHHhH
Q 018565 108 ENNMAAFILLESSPVMLAPWHSLGTRV 134 (354)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l 134 (354)
.+ ....+|..|.+.+
T Consensus 110 --~l----------a~~~alr~l~~~v 124 (151)
T 3u1d_A 110 --MY----------EEAAVWRSVYEQM 124 (151)
T ss_dssp --CS----------THHHHTHHHHHHS
T ss_pred --HH----------hHHHHHHHHHHHh
Confidence 00 1225677777766
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.014 Score=46.69 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
.+|++.+.+... .. +++.|+++||+.+++++..++++|..|...|+++.... ..|.|+++..
T Consensus 28 yAlr~L~~LA~~---~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar~ 89 (159)
T 3lwf_A 28 YGLTITLELAKR---IG-DGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG--AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHHHT---TT-SCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS--TTCEEEECSC
T ss_pred HHHHHHHHHHhc---CC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC--CCCceEecCC
Confidence 455555544331 11 26899999999999999999999999999999987652 1467887753
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0073 Score=46.98 Aligned_cols=66 Identities=11% Similarity=0.223 Sum_probs=50.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.+.|+.|...|+++......+ .-.+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 456677788764 6899999999999999999999999999999987652111 11477787775433
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.038 Score=43.79 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=49.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
+.|+..|... +++|..+||+.+++++..+.++++-|...|++++.....+ .-.+.+|+.|+.+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 4566777654 7899999999999999999999999999999987742110 11477888776444
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.024 Score=45.47 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=48.4
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhhc
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~~ 105 (354)
.++.|+..|... ++++|..+||+.+++++..+.++++-|...|+|++.... .++ .+.+|+.|+.+..
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKP-ENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCC-CCCCeeEeEECHHHHHHHH
Confidence 456677777653 259999999999999999999999999999999877421 012 3778888764443
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0064 Score=44.00 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=40.7
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
++|..+||+.+++++..+.++|+.|...|++.... ++ .|++|+.|+.+.
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~----d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECEL----EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE----ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCC----CCCeEEEEEChhHHHHH
Confidence 39999999999999999999999999999994333 23 488998876444
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.01 Score=47.26 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=49.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.+.|+-|...|++++.... |+ ...|.+|+.++.+.
T Consensus 50 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY-PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 456678888764 79999999999999999999999999999999876411 10 12377787775443
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0099 Score=46.63 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=50.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.++..|... ++.|..+||+.+++++..+.+.|+.|...|+++..... |. .-.+.+|+.++.+.
T Consensus 43 ~~~~iL~~l~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEE-GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 345677777654 69999999999999999999999999999999876421 10 12377888776443
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0091 Score=47.60 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=50.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++|+-|...|+++..... |. .-.|.+|+.++.+.
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456678888764 68999999999999999999999999999999876421 10 12377887776433
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.091 Score=46.49 Aligned_cols=122 Identities=21% Similarity=0.146 Sum_probs=70.7
Q ss_pred CCceEEEecCCccHHHHH----HHHHCCCCeE--EEeec-h--------HHhhh----c----c--cCCCe--EEeecCC
Q 018565 189 GIETLVDIGGNDGTTLRT----LTKAFPRIRG--INFDL-P--------HVVCV----A----E--KCHGV--EHVGGDM 241 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~-~--------~~~~~----a----~--~~~~v--~~~~~d~ 241 (354)
..-+|+|+|=|+|..... +.+..|+.+. +.++. + +.... . . ...++ ++.-||.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 456899999999976543 2345677654 44442 1 10000 0 0 03444 4566787
Q ss_pred CC---CCC--cceEEEeccccccC-ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 242 FD---GVP--EADAAIIKWVLHDW-GDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 242 ~~---~~~--~~D~i~~~~~lh~~-~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
.+ .++ .+|++++-..--.- |+=.-..++++++++++| ||.+.-. .
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p-gg~laTY-------t--------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE-KGYWVSY-------S--------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE-EEEEEES-------C---------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC-CcEEEEE-------e---------------------
Confidence 65 233 38998884322111 111225789999999999 8876420 0
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEEcCC
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITSIHA 345 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~ 345 (354)
....+++-|+++||++.++-..++
T Consensus 227 ------aag~VRR~L~~aGF~V~k~~G~g~ 250 (308)
T 3vyw_A 227 ------SSLSVRKSLLTLGFKVGSSREIGR 250 (308)
T ss_dssp ------CCHHHHHHHHHTTCEEEEEECC--
T ss_pred ------CcHHHHHHHHHCCCEEEecCCCCC
Confidence 134557789999999887655544
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0076 Score=46.98 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.+.++-|...|+++...... ++ .|.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~-d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPA-DRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCC-CCceEEEEECHHHHHHH
Confidence 456677777653 699999999999999999999999999999998864110 12 377888776444
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=46.84 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++|+.|...|++++.... |+ .-.+.+|+.|+.+.
T Consensus 44 ~~~~iL~~l~~~-~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN-DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 456677778654 68999999999999999999999999999999876421 10 12378888876443
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.012 Score=46.66 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=46.0
Q ss_pred hhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 45 AVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 45 ~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
.|... ++.|..+||+.+|+++..+.+.|+.|...|+++... +..+.+|+.++.+.
T Consensus 48 ~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~----~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREV-GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP----WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET----TTEEEECHHHHHHH
T ss_pred HHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec----CCceEEChhHHHHH
Confidence 44442 689999999999999999999999999999998876 36788998876443
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0068 Score=47.16 Aligned_cols=66 Identities=11% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.++++.|...|++++....++ .-.+.+|+.|+.+.
T Consensus 37 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND-EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT-CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 445667777653 7999999999999999999999999999999997742110 12478888876444
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.014 Score=46.08 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=50.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.+.++.|...|+++..... |. .-.|.+|+.++.+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 456677777654 68999999999999999999999999999999886421 10 12377888776443
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.022 Score=45.72 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=46.4
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
.+|++.+.+..- . ++++|.++||+.+++++..++++|..|...|+++.... ..|.|+++..
T Consensus 13 yAlr~l~~La~~---~--~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar~ 73 (162)
T 3k69_A 13 VAVHSILYLDAH---R--DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVG--KNGGYQLDLA 73 (162)
T ss_dssp HHHHHHHHHHTT---T--TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECS--TTCEEECCSC
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecC--CCCCeEecCC
Confidence 455555544332 1 26899999999999999999999999999999977642 1367988754
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0048 Score=52.64 Aligned_cols=69 Identities=6% Similarity=0.105 Sum_probs=53.7
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceee-ccCCC--C--CceEecCcccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKE-VPTSQ--G--SMAFQQTPLSR 101 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~-~~~~~--~--~~~y~~t~~~~ 101 (354)
+.+|....++.|+..|.. +|.|+.+||+.+|+++..+.+.|+.|...|++.. ..... | ...|++++.+.
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 455556677888888875 7999999999999999999999999999999987 33100 0 12488887664
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.017 Score=45.29 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=40.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
++.|+++||+.+++++..++++|..|...|+++.... ..|.|+++..
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG--AKGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSS--SSSEEEESSC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCC--CCCCeeecCC
Confidence 5899999999999999999999999999999986641 1367888754
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=46.36 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=42.8
Q ss_pred HHcChhhhhhhCC-CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKG-SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~-~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.++..|...+ +++|..+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.|+.+.
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 3455677776532 6899999999999999999999999999999987742100 11367777776444
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.01 Score=46.74 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=51.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~~ 105 (354)
.++.|+..|... +++|..+||+.+++++..+.+.|+-|...|+++..... |. .-.+.+|+.++.+..
T Consensus 48 ~~~~iL~~l~~~-~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWET-DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 456677777764 68999999999999999999999999999999886421 00 124788888864443
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0087 Score=48.19 Aligned_cols=66 Identities=20% Similarity=0.321 Sum_probs=51.1
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.+.++.|...|++++.....+ .-.+.+|+.++.+.
T Consensus 46 ~~~~iL~~L~~~-~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH-GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 456677788664 6999999999999999999999999999999988642111 12378888876443
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.019 Score=44.70 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=48.2
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
..++.|+..|.. ++.|..+||+.+|+++..+.+.|+-|...|++++.... |+ .-.|.+|+.++.+.
T Consensus 38 ~~~~~iL~~l~~--~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSE--ESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTT--CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 355677788876 34999999999999999999999999999999876421 10 12477887775443
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.037 Score=45.45 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=53.2
Q ss_pred HHHHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 36 CAVELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 36 ~a~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
+..++.|+..|... ++++|..+||+.+++++..+.++++.|...|+|++.....+ .-.+.+|+.|+.+..
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 34567777777642 26899999999999999999999999999999988642111 124889988864443
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.017 Score=45.02 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=51.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~~ 105 (354)
.++.|+..|... ++.|..+||+.+++++..+.+.++.|...|+++..... |. .-.+.+|+.|+.+..
T Consensus 41 ~~~~iL~~l~~~-~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH-ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 456677777654 68999999999999999999999999999999886421 10 123788988865443
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.02 Score=44.11 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=49.3
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
+.-+.-|++.|...+++.|++||.+.+ +++..-+.|.|+.|+..|++.+....++..+|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 456677888887545799999999999 8999999999999999999988764333446754
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0096 Score=46.83 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++++.|...|++++.....+ .-.+.+|+.|+.+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 456777888764 7999999999999999999999999999999997742100 12478888876443
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.018 Score=47.97 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=51.3
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCC---C-CceEecCccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQ---G-SMAFQQTPLS 100 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~---~-~~~y~~t~~~ 100 (354)
..+|....++.|+..|.. +|.|+.+||+.+|+++..+.+.|+.|...|++....... + .-.|++|+.+
T Consensus 9 lkaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK--RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 345555566677777765 799999999999999999999999999999998764210 0 1237777654
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.012 Score=43.19 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=41.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.++.|+..|... ++.|..+||+.+|+++..+.+.|+.|...|++....
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666677543 689999999999999999999999999999998765
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.016 Score=48.81 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=46.1
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
++++..+||+.+++++..+.+.|+-|...|++++.. ...+.+|+.|+.+..
T Consensus 19 ~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~----~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 19 NKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK----KAGYLLTDLGLKLVS 69 (214)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec----CCCeEECHHHHHHHH
Confidence 799999999999999999999999999999999987 378999999875543
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0083 Score=46.50 Aligned_cols=65 Identities=6% Similarity=0.032 Sum_probs=50.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
.++.|+..|... ++.|..+||+.+++++..+.+.++-|...|+++...... ++ .|.+|+.++.+.
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~-d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPK-DQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCC-CCCeeEEEECHHHHHHH
Confidence 456677777664 689999999999999999999999999999998764210 12 377888776443
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.024 Score=44.54 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=49.2
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+..+.-|++.|...+++.|++||.+.+ +++..-+.|.|+.|...|++.+....++..+|.++
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence 345566888887645799999999999 88999999999999999999887643334457653
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=47.80 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=49.6
Q ss_pred HHcChhhhhhhCCCC--CCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSP--ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~--~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|...++| +|..+||+.+++++..+.++|+-|...|++++.....+ .-.+.+|+.++.+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456678888764333 99999999999999999999999999999988642100 11377887776443
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.035 Score=43.53 Aligned_cols=60 Identities=8% Similarity=0.149 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
...+|++.+.+..- . ++ |+++||+.+++++..++++|..|...|+|+.... .|.|+++..
T Consensus 8 ~~yAl~~L~~La~~----~--~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG---~GGy~Lar~ 67 (145)
T 1xd7_A 8 LAVAIHILSLISMD----E--KT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG---VPGASLKKD 67 (145)
T ss_dssp HHHHHHHHHHHHTC----S--CC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS---SSSCEESSC
T ss_pred HHHHHHHHHHHHhC----C--CC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC---CCCceecCC
Confidence 34455555554321 2 35 9999999999999999999999999999987752 467877754
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.018 Score=36.51 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=42.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
|..|++.+..+||-+.+..+|++.|++++-+..+|+-|...|++.-+
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 55688999888788899999999999999999999999999998753
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.026 Score=50.02 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=34.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK 230 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 230 (354)
++..|||++||+|.++..+++. +.+++++|+ +.+++.+++
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 5679999999999999998876 568999999 888877764
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.03 Score=46.22 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=45.9
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
..++....+..|+..|.+ ++.|..+||+.+|+++..+.+.|+.|...|++...
T Consensus 14 ~k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 14 IKVMLEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334445667788888874 79999999999999999999999999999999877
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.025 Score=44.14 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=42.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
..++..|....+|.|+.+||+.+|+++..+.++|+.|...|+++.....++...|.++.
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 33455553112789999999999999999999999999999998863111123455554
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.018 Score=42.71 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=39.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
++.|+..+...|.+.|..+||+.+|+++..+++.|..|...|+++..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45566666432348999999999999999999999999999999876
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.013 Score=47.99 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=52.0
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcC-CCcccHHHHHHHHhccCceeeccCC--CC--CceEecCcccch
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALK-CDPSLLQRIMRFLIHLKFFKEVPTS--QG--SMAFQQTPLSRR 102 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g-~~~~~l~~lL~~L~~~g~l~~~~~~--~~--~~~y~~t~~~~~ 102 (354)
.+|.--.++.|+..|.. +|.|+.+||+.+| ++...+++.|+.|...|+|+..... .| +..|++++.+-.
T Consensus 18 ~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIG--RSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 34455577788888875 7999999999996 8999999999999999999765421 01 234877765533
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.038 Score=42.84 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=48.0
Q ss_pred HHHcChhhhhhhCC-CCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 37 AVELGIAEAVEEKG-SPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 37 a~~lglf~~L~~~~-~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
..+.-|++.|...+ ++.|++||.+.+ +++..-+.|.|+.|+..|++.+....++..+|.++
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 35566888887654 689999999998 88999999999999999999887643334567653
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.041 Score=42.83 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+.-+.-|++.|....++.|++||.+.+ +++..-+.|.|+.|+..|++.+....+|..+|...
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 456677888887655799999999988 68899999999999999999887643334567654
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=94.32 E-value=0.019 Score=43.83 Aligned_cols=67 Identities=10% Similarity=0.248 Sum_probs=50.1
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.++..|... +++.|..+||+.+++++..+.++|+-|...|++++....++ .-.+.+|+.|+.+.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345566777652 25899999999999999999999999999999988542111 12377888876444
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.017 Score=48.30 Aligned_cols=66 Identities=12% Similarity=-0.024 Sum_probs=50.7
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.|+..|... +++|..+||+.+++++..+.++|+.|...|++.+.....+ .-.+.+|+.|+.+.
T Consensus 49 ~q~~iL~~L~~~-~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 345667777654 6999999999999999999999999999999988752100 11478888886444
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.013 Score=44.35 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=45.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcC----CCcccHHHHHHHHhccCceeeccCCCCCce---EecCcccchhh
Q 018565 40 LGIAEAVEEKGSPITLNELASALK----CDPSLLQRIMRFLIHLKFFKEVPTSQGSMA---FQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g----~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~~~~~l~ 104 (354)
+.|+..|... ++.|..+||+.++ +++..+.++|+-|...|++++... +.+ +.+|+.++.+.
T Consensus 13 ~~vL~~l~~~-~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~---~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 13 WEVMNIIWMK-KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec---CCeEEEEEecCHHHHHH
Confidence 4455555442 7999999999999 779999999999999999988762 232 35677665444
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.035 Score=43.70 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=41.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|... ++.|..+||+.+|+++..+.+.|+.|...|++....
T Consensus 8 ~~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 8 IDRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 345677777764 789999999999999999999999999999997654
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.03 Score=44.12 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|... ++.|..+||+.+|+++..+.+.|+.|...|++....
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 51 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEE
Confidence 456788888764 689999999999999999999999999999998653
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.036 Score=43.33 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=41.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|++.|... ++.|..|||+.+|+++..+.+.|+.|...|++....
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 45677888764 789999999999999999999999999999998654
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.021 Score=44.95 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=40.6
Q ss_pred HcChhhhhhhC----CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC-CceEecCcccchh
Q 018565 39 ELGIAEAVEEK----GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG-SMAFQQTPLSRRL 103 (354)
Q Consensus 39 ~lglf~~L~~~----~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~-~~~y~~t~~~~~l 103 (354)
++.++..|... ++++|..+||+.+++++..+.++++-|...|++...++.|. .-...+|+.|+.+
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~ 104 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAA 104 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHH
Confidence 34455555432 14689999999999999999999999999999965443210 1136777776543
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.05 Score=42.97 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=49.5
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+.-+.-|++.|...+++.|++||.+.+ +++..-+.|.|+.|+..|++.+....++..+|..+
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence 556777888887655799999999998 78999999999999999999887643333457653
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=94.03 E-value=0.024 Score=39.63 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=40.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcC----CCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALK----CDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g----~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|++.|... ++.|+.||++.++ +++..+.++|+.|...|++.+..
T Consensus 10 ~e~~vL~~L~~~-~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWKH-SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHTS-SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 345566666553 7999999999996 68899999999999999998876
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.023 Score=41.44 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCC----CcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKC----DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~----~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.++.|+..|-+. +++|+.||++.++. ++.-+.++|+-|+..|+|.+..
T Consensus 36 ~e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 36 AELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp SCSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 356677777653 69999999999974 5789999999999999999876
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.044 Score=43.80 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=41.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|++.|... ++.|..|||+.+|+++..+.+.|+.|...|++....
T Consensus 11 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 11 TDIKILQVLQEN-GRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeec
Confidence 345677777764 789999999999999999999999999999998654
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.075 Score=43.58 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCc-eeeccCCCCCceEecCcc
Q 018565 37 AVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKF-FKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~y~~t~~ 99 (354)
-....|++.|...++++|+.+||+.+|++++.+.+-|+.|...|+ +.... +.|.+++.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~~-----~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATP-----RGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEET-----TEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEC-----CEEEECCc
Confidence 445678888875335799999999999999999999999999999 76643 66877754
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.11 Score=39.15 Aligned_cols=69 Identities=19% Similarity=0.115 Sum_probs=51.9
Q ss_pred HHHHHHHcChhhhhhhCCCCCCHHHHHhHc------C--CCc-ccHHHHHHHHhccCceeeccCC-CCC--ceEecCccc
Q 018565 33 VVKCAVELGIAEAVEEKGSPITLNELASAL------K--CDP-SLLQRIMRFLIHLKFFKEVPTS-QGS--MAFQQTPLS 100 (354)
Q Consensus 33 ~l~~a~~lglf~~L~~~~~~~t~~elA~~~------g--~~~-~~l~~lL~~L~~~g~l~~~~~~-~~~--~~y~~t~~~ 100 (354)
++....++-|+..|.. +|.+.-+|++.+ + +++ ..+.+.|+-|...|+++..... ++. -.|++|+.|
T Consensus 9 ~~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G 86 (118)
T 2esh_A 9 FRGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQG 86 (118)
T ss_dssp HHHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHH
T ss_pred cccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHH
Confidence 3444566667777766 799999999998 3 899 9999999999999999876421 111 248999988
Q ss_pred chh
Q 018565 101 RRL 103 (354)
Q Consensus 101 ~~l 103 (354)
+.+
T Consensus 87 ~~~ 89 (118)
T 2esh_A 87 KLY 89 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.028 Score=41.18 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++.|..|||+.+|+++..+.+.|+.|...|+++...
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 789999999999999999999999999999999875
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.13 Score=32.58 Aligned_cols=51 Identities=10% Similarity=0.118 Sum_probs=43.1
Q ss_pred hhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 44 EAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 44 ~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
..|.+-..++|+.|+|...|++-+..+.-|+.|...|-+.+.. .+|++.|-
T Consensus 10 all~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKRs-----SRYrlkph 60 (68)
T 3i71_A 10 ALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRS-----SRYRLKPH 60 (68)
T ss_dssp HHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----CEEEECC-
T ss_pred HHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhhc-----cccccCcc
Confidence 3444333689999999999999999999999999999999998 79988763
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.046 Score=43.16 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=41.3
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|+..|... ++.|..|||+.+|+++..+.+.|+.|...|++....
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEE
Confidence 45677788764 799999999999999999999999999999998654
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.052 Score=42.75 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=41.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|... ++.|..+||+.+|+++..+.+.++.|...|++....
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 345677888764 789999999999999999999999999999998654
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.11 Score=35.30 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=41.0
Q ss_pred hhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 43 AEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 43 f~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
++.|.. ++..|+.+||.++|++...+.|.|--|...|.|...+.. +..|+.+
T Consensus 21 i~~L~~-~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~--PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNT-NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN--PPKWFKN 72 (75)
T ss_dssp HHTSCT-TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS--SCEEEEC
T ss_pred HHhCCC-CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCC--CCCccCC
Confidence 346665 245999999999999999999999999999999877621 3455544
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.044 Score=43.23 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|++.|... ++.|..+||+.+|+++..+.+.|+.|...|++....
T Consensus 8 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 8 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 345677778764 799999999999999999999999999999998654
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.06 Score=43.48 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|... ++.|..|||+.+|+++..+.+.|+.|...|++....
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 445678888764 789999999999999999999999999999997653
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.035 Score=43.56 Aligned_cols=64 Identities=9% Similarity=0.145 Sum_probs=47.0
Q ss_pred cChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 40 LGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
+.++..|... ++++|..+||+.+++++..+.++++-|...|++++....+ ++ .+.+|+.|+.+.
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~-DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPN-DGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCC-cCceeEEEECHHHHHHH
Confidence 3445555321 2689999999999999999999999999999998775211 12 377888876443
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.054 Score=43.33 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=42.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|++.|..+ +++|..+||+.+|+++..+.+-++.|...|++....
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeece
Confidence 456788889864 799999999999999999999999999999998654
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.053 Score=42.05 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=40.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|+..|... ++.|..+||+.+|+++..+.+.|+.|...|++....
T Consensus 6 ~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccc
Confidence 45567777653 689999999999999999999999999999997654
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.051 Score=44.98 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=33.9
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.|.|..|||+.+|++...+.+.|+.|...|++....
T Consensus 22 g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 22 GYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 3589999999999999999999999999999998875
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.22 Score=37.35 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=52.0
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHc------CCCcccHHHHHHHHhccCceeeccCC--CCC--ceEecCcccc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASAL------KCDPSLLQRIMRFLIHLKFFKEVPTS--QGS--MAFQQTPLSR 101 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~------g~~~~~l~~lL~~L~~~g~l~~~~~~--~~~--~~y~~t~~~~ 101 (354)
.+++-.+++-|+..|.. +|.+.-+|++.+ ++++..+...|+-|...|+++..... ++. -.|++|+.|+
T Consensus 6 ~l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 83 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGR 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHH
T ss_pred HHHHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHH
Confidence 34455566666777776 799999999998 78999999999999999999876311 111 1399999886
Q ss_pred h
Q 018565 102 R 102 (354)
Q Consensus 102 ~ 102 (354)
.
T Consensus 84 ~ 84 (117)
T 4esf_A 84 Q 84 (117)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.62 Score=42.01 Aligned_cols=122 Identities=8% Similarity=0.008 Sum_probs=74.7
Q ss_pred CceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHhhhccc-CCCeEEeecCCCC-C---CC--cceEEEeccccccC
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRI-RGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-G---VP--EADAAIIKWVLHDW 260 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~---~~--~~D~i~~~~~lh~~ 260 (354)
..+++|+-||.|.+...+.+..-.. .+.++|. +..++..+. .+...+..+|+.+ . ++ .+|+++.......|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3689999999999999999874222 4678888 766666654 3445677888877 2 23 58999997776555
Q ss_pred ChH--------HHHHHHHH---HHHhcC--CCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHH
Q 018565 261 GDD--------ECIKILKN---CKEAIT--KDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWD 327 (354)
Q Consensus 261 ~~~--------~~~~~L~~---~~~~L~--p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~ 327 (354)
+.. ....++.+ +.+.++ | +++++|.+..-. + ..+.+.+.
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P---~~~~~ENV~~l~-----------------------~--~~~~~~i~ 133 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLP---KYILLENVKGFE-----------------------V--SSTRDLLI 133 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCC---SEEEEEEETTGG-----------------------G--SHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCC---CEEEEeCCcccc-----------------------C--HHHHHHHH
Confidence 422 11123332 334455 6 577777663210 0 11356778
Q ss_pred HHHHHcCCceeE
Q 018565 328 YVLRQAGFSRYN 339 (354)
Q Consensus 328 ~ll~~aGf~~~~ 339 (354)
+.|++.||.+..
T Consensus 134 ~~l~~~GY~v~~ 145 (343)
T 1g55_A 134 QTIENCGFQYQE 145 (343)
T ss_dssp HHHHHTTEEEEE
T ss_pred HHHHHCCCeeEE
Confidence 888999987754
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.14 Score=37.23 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=41.5
Q ss_pred HHHHHHHcChhh-hhhhCCCCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 33 VVKCAVELGIAE-AVEEKGSPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 33 ~l~~a~~lglf~-~L~~~~~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+...++..|.+ .+.. +..+ |..+||+.+|++..-+++.|+.|...|+++...
T Consensus 15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 344445555665 3443 2455 999999999999999999999999999998776
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.058 Score=45.83 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=44.6
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
++.|+.++|+.+++++..+.+.++.|...|+|++.... ....+.+|+.|+.+..
T Consensus 26 ~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~-R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcC-CeEEEEECHHHHHHHH
Confidence 58999999999999999999999999999999988200 0167889998875543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=92.47 E-value=1 Score=41.21 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=65.0
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHhhhccc-CCCeEEeecCCCC-C---C-------CcceEEEeccc
Q 018565 191 ETLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHVVCVAEK-CHGVEHVGGDMFD-G---V-------PEADAAIIKWV 256 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~---~-------~~~D~i~~~~~ 256 (354)
.+++|+=||.|.++..+.++ +.+ +.++|. +..++..+. .+...++.+|+.+ . + +++|+++..-.
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 57999999999999999887 455 458888 666665554 4567788888876 2 2 35899998777
Q ss_pred cccCCh-------HHHHHHHH---HHHHhcCCCCceEEEEeeeeC
Q 018565 257 LHDWGD-------DECIKILK---NCKEAITKDKGKVIIVEAIIE 291 (354)
Q Consensus 257 lh~~~~-------~~~~~~L~---~~~~~L~p~gG~lli~e~~~~ 291 (354)
...|+. +....++. ++.+.++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P---~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP---LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC---SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC---CEEEEecchH
Confidence 666541 11223333 34445678 7888887643
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=92.32 E-value=0.074 Score=45.85 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=50.7
Q ss_pred HHcChhhhhhhCCC-CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--eEecCcccchhh
Q 018565 38 VELGIAEAVEEKGS-PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~-~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~~~~l~ 104 (354)
.++.|+..|...++ ++|..+||+.+++++..+.++++-|...|++++....++.. ...+|+.|+.+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 45667777865432 59999999999999999999999999999998875321111 377788776444
|
| >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.065 Score=42.29 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=46.6
Q ss_pred HHHcChhhhhhhCC-CCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 37 AVELGIAEAVEEKG-SPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 37 a~~lglf~~L~~~~-~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
..+.-|++.|...+ ++.|++||.+.+ +++..-+.|.|+.|+..|++.+....++..+|.+
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 34566788886544 689999999998 7889999999999999999988753222345764
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=91.88 E-value=0.066 Score=45.51 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=42.0
Q ss_pred CCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 53 ITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 53 ~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
.+..+||+.+++++..+.+.|+-|...|++++.. +..+.+|+.++.+.
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG----DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT----TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC----CccEEECHHHHHHH
Confidence 3459999999999999999999999999999987 36799999886444
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.1 Score=39.88 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=33.1
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|..+||+.+|+++..+.+.|+.|...|++....
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 47999999999999999999999999999999875
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.23 Score=37.14 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHc--------CCCcccHHHHHHHHhccCceeeccC--CCCC--ceEecCcc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASAL--------KCDPSLLQRIMRFLIHLKFFKEVPT--SQGS--MAFQQTPL 99 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~--------g~~~~~l~~lL~~L~~~g~l~~~~~--~~~~--~~y~~t~~ 99 (354)
..++-.+++-|+..|.. +|.+.-+|.+.+ ++++..+...|+-|...|+++.... .+|. -.|++|+.
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~ 84 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEI 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHH
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHH
Confidence 45555667777777876 799999998887 7899999999999999999987631 1111 13899998
Q ss_pred cch
Q 018565 100 SRR 102 (354)
Q Consensus 100 ~~~ 102 (354)
|+.
T Consensus 85 G~~ 87 (116)
T 3f8b_A 85 GHE 87 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=91.48 E-value=0.12 Score=36.88 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=39.0
Q ss_pred cChhhhhhhCC-CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKG-SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~-~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.|+..|...+ .+++..+||++++++..-+.+.|+.|...|++.+..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 44566665421 489999999999999999999999999999998554
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=91.42 E-value=1.5 Score=39.14 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=75.2
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHhhhccc-CCCeEEeecCCCC----CCCcceEEEeccccccCC-
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIR-GINFDL-PHVVCVAEK-CHGVEHVGGDMFD----GVPEADAAIIKWVLHDWG- 261 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~----~~~~~D~i~~~~~lh~~~- 261 (354)
..+++|+-||.|.++..+.+. +.+ +..+|. +..++..+. .+... .+|+.+ ..+++|+++.......|+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 468999999999999999886 454 556787 666555543 11111 577765 245689999876665553
Q ss_pred --------hH---HHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHH
Q 018565 262 --------DD---ECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVL 330 (354)
Q Consensus 262 --------~~---~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll 330 (354)
++ ....++ ++.+.++| +++++|.+..-... . ...+.+.+.+.|
T Consensus 87 ag~~~g~~d~r~~L~~~~~-r~i~~~~P---~~~~~ENV~gl~~~--------------------~--~~~~~~~i~~~l 140 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIA-RIVREKKP---KVVFMENVKNFASH--------------------D--NGNTLEVVKNTM 140 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHH-HHHHHHCC---SEEEEEEEGGGGTG--------------------G--GGHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHH-HHHHhccC---cEEEEeCcHHHHhc--------------------c--ccHHHHHHHHHH
Confidence 11 112223 34445688 68888876431110 1 122467788889
Q ss_pred HHcCCceeE
Q 018565 331 RQAGFSRYN 339 (354)
Q Consensus 331 ~~aGf~~~~ 339 (354)
++.||.+..
T Consensus 141 ~~~GY~v~~ 149 (327)
T 2c7p_A 141 NELDYSFHA 149 (327)
T ss_dssp HHTTBCCEE
T ss_pred HhCCCEEEE
Confidence 999987654
|
| >2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.15 Score=42.10 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=43.0
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
+|++..+||+.+|+++..++..++-|...|+++... +...+|+.|+.+.
T Consensus 29 ~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~-----~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ-----RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC-----CCeEECHHHHHHH
Confidence 589999999999999999999999999999999887 6788999886444
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.15 Score=39.46 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcC----CCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALK----CDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g----~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|....+++|+.+|++.++ +++..+.++|+-|...|+|.+..
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 35556666654226999999999998 78999999999999999999876
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.24 Score=37.19 Aligned_cols=73 Identities=12% Similarity=0.180 Sum_probs=54.7
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcC------CCcccHHHHHHHHhccCceeeccC--CCCC--ceEecCccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALK------CDPSLLQRIMRFLIHLKFFKEVPT--SQGS--MAFQQTPLS 100 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g------~~~~~l~~lL~~L~~~g~l~~~~~--~~~~--~~y~~t~~~ 100 (354)
..+++-.+++-|+..|.. +|.+.-+|++.+. +++..+...|+-|...|+++.... .++. ..|++|+.|
T Consensus 8 ~~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G 85 (117)
T 3elk_A 8 ERILHGLITLYILKELVK--RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAG 85 (117)
T ss_dssp CHHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHH
T ss_pred HHHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHH
Confidence 345556667777788876 7999999998886 899999999999999999986641 1111 249999998
Q ss_pred c-hhhc
Q 018565 101 R-RLMR 105 (354)
Q Consensus 101 ~-~l~~ 105 (354)
+ .|..
T Consensus 86 ~~~l~~ 91 (117)
T 3elk_A 86 KKFLCD 91 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 6 4443
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=90.51 E-value=0.18 Score=42.58 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=43.3
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
+.+..+||+.+++++..+.+.|+-|...|++++.. ...+.+|+.|+.+..
T Consensus 24 ~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQSGPTVSQTVARMERDGLVVVAS----DRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT----TSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC----CCCeEECHHHHHHHH
Confidence 44669999999999999999999999999999987 367999999865443
|
| >1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 | Back alignment and structure |
|---|
Probab=90.48 E-value=0.19 Score=34.42 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=34.3
Q ss_pred CCCCHHHHHhHcCC-CcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKC-DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~-~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.+++.++|+.+++ ..+++..++.+|.++|++++..
T Consensus 29 ~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecC
Confidence 67899999999999 9999999999999999999986
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.24 E-value=1.6 Score=34.21 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=38.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD 243 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 243 (354)
-..-|+|+|=|+|..=-.+.+.+|+-++.++|..-.+.-....+.=.++.||+.+
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 3467999999999999999999999999999962111000002334466677765
|
| >2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 | Back alignment and structure |
|---|
Probab=90.23 E-value=0.054 Score=49.14 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 105 (354)
-+..++..|... +++|..|||+.+|+++.-++|.|+.|...|+++... ....+|+.|+.+..
T Consensus 21 r~~~iL~~l~~~-~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~-----~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 21 ERFQILRNIYWM-QPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSK-----SGMTLTERGLEVYQ 82 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-----cceEEcHHHHHHHH
Confidence 345677777654 799999999999999999999999999999998554 34789988875554
|
| >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.21 Score=37.65 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=44.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
..-.|.+.+.. .|.++.+||+.+|+++..+..+|+.|...|.+..-. ++.|.++.
T Consensus 8 l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~----~~~~~~~~ 62 (121)
T 2pjp_A 8 IWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV----KDRYYRND 62 (121)
T ss_dssp HHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE----TTEEEEHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec----CCceECHH
Confidence 33455666643 577999999999999999999999999999888887 36775554
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=90.02 E-value=0.43 Score=35.69 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=51.4
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHc------CCCcccHHHHHHHHhccCceeeccCC--CCC--ceEecCcccc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASAL------KCDPSLLQRIMRFLIHLKFFKEVPTS--QGS--MAFQQTPLSR 101 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~------g~~~~~l~~lL~~L~~~g~l~~~~~~--~~~--~~y~~t~~~~ 101 (354)
.+++-.+++-|+..|.. +|.+.-+|++.+ ++++..+...|+-|...|+++..... +|. ..|++|+.|+
T Consensus 8 ~l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~ 85 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGE 85 (116)
T ss_dssp HHHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHH
T ss_pred HHHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHH
Confidence 44445556666777776 799999999998 68999999999999999999876310 111 1399999886
Q ss_pred h
Q 018565 102 R 102 (354)
Q Consensus 102 ~ 102 (354)
.
T Consensus 86 ~ 86 (116)
T 3hhh_A 86 A 86 (116)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.18 Score=39.45 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=46.0
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 37 AVELGIAEAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
..+.-|++.|...+ +.|++||.+.+ +++..-+.|.|+.|+..|++.+....++..+|.+.
T Consensus 19 ~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 19 PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEET
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence 35566778787654 89999998887 67889999999999999999887643233457643
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=89.59 E-value=0.15 Score=39.90 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHHHHcChhhhhhhCCCCCCHHHHHhHc--------CCCcccHHHHHHHHhccCceeeccCC--CC--CceEecCcccc
Q 018565 34 VKCAVELGIAEAVEEKGSPITLNELASAL--------KCDPSLLQRIMRFLIHLKFFKEVPTS--QG--SMAFQQTPLSR 101 (354)
Q Consensus 34 l~~a~~lglf~~L~~~~~~~t~~elA~~~--------g~~~~~l~~lL~~L~~~g~l~~~~~~--~~--~~~y~~t~~~~ 101 (354)
+....++-|+..|.. +|.+.-+|++.+ ++++..+.+.|+-|...|+|+..... ++ --.|++|+.++
T Consensus 38 ~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~ 115 (145)
T 1xma_A 38 IRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGI 115 (145)
T ss_dssp GGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHH
T ss_pred hcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHH
Confidence 344456667777765 789999988887 69999999999999999999776321 01 12489999886
Q ss_pred hh
Q 018565 102 RL 103 (354)
Q Consensus 102 ~l 103 (354)
.+
T Consensus 116 ~~ 117 (145)
T 1xma_A 116 KY 117 (145)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.2 Score=38.66 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
...|.++||+++|+++.-+.+.|+-|...|+++..
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46799999999999999999999999999999884
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=89.31 E-value=0.14 Score=38.59 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=40.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcC----CCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALK----CDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g----~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|+..|-.. +|.|..+||+.++ +++..+.++|+-|...|+|.+..
T Consensus 11 ~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 345566666654 6999999999997 57999999999999999999876
|
| >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.3 Score=43.67 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=45.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+..|++.|.+ ++++|.++||+.+|+++..++|-|+.|...|++.+..+ ...|++.+.
T Consensus 7 ~~~Il~~L~~-~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~---g~GY~l~~~ 63 (321)
T 1bia_A 7 PLKLIALLAN-GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVP---GKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHTT-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEET---TTEEECSSC
T ss_pred HHHHHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEec---CCCcEEeec
Confidence 3456777765 36899999999999999999999999999999865442 246888653
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=88.86 E-value=0.22 Score=36.31 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=37.8
Q ss_pred HcChhhhhhhCCCCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|+..|.. ++.+ |..+||+.+|++..-+++-|+.|...|+++...
T Consensus 30 ~~~I~~~l~~-g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDG-NEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBT-TEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcC-CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3344444544 2455 999999999999999999999999999998775
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=88.66 E-value=0.27 Score=42.23 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=49.2
Q ss_pred cChhhhhhhCC-CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--eEecCcccchhh
Q 018565 40 LGIAEAVEEKG-SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--AFQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~~-~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~~~~l~ 104 (354)
..|+..|-+.+ +++|..+||+.+++++..+.++|+-|...|++.+.....+.. ...+|+.|+.+.
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 55666665421 589999999999999999999999999999998875321222 367888876544
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=88.63 E-value=1.5 Score=40.11 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=28.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-------CCCeEEEeechH
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAF-------PRIRGINFDLPH 223 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~ 223 (354)
+..-+|+|+|+|+|.++..+++.. ..++++.++...
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 445689999999999999888642 345889999833
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=88.49 E-value=1.3 Score=39.61 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=77.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCe-E-EEeec-hHHhhhccc--CCCeEEeecCCCC-C---CC--cceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIR-G-INFDL-PHVVCVAEK--CHGVEHVGGDMFD-G---VP--EADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~---~~--~~D~i~~~~~l 257 (354)
...+++|+-||.|.+...+.+..-..+ + .++|+ +..++..+. ... +..+|+.+ . ++ ++|+++.....
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPC 86 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPC 86 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCc
Confidence 457999999999999999988742234 4 58888 666655543 222 56678876 2 23 48999987776
Q ss_pred ccC--C--------hHHHHHHHHHHHH----hc--CCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccC
Q 018565 258 HDW--G--------DDECIKILKNCKE----AI--TKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKER 321 (354)
Q Consensus 258 h~~--~--------~~~~~~~L~~~~~----~L--~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~ 321 (354)
..| + ++....++..+.+ .+ +| +++++|.+..-. .+ .
T Consensus 87 Q~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P---~~~~lENV~gl~-----------------------~~--~ 138 (327)
T 3qv2_A 87 QPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKP---KHIFIENVPLFK-----------------------ES--L 138 (327)
T ss_dssp TTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCC---SEEEEEECGGGG-----------------------GS--H
T ss_pred cCcccccCCCCCCCccccchhHHHHHHHHHHHhccCC---CEEEEEchhhhc-----------------------Ch--H
Confidence 666 1 1122234555544 44 55 788888653210 01 1
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 018565 322 SLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 322 t~~e~~~ll~~aGf~~~~~ 340 (354)
+.+.+.+.|++.||.+...
T Consensus 139 ~~~~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 139 VFKEIYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEE
Confidence 3677888899999987643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.42 E-value=0.41 Score=41.26 Aligned_cols=40 Identities=23% Similarity=0.113 Sum_probs=33.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE 229 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 229 (354)
.++..|||..||+|..+....+. +.+++++|+ +..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 35679999999999999998876 568999999 77777665
|
| >4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=88.29 E-value=0.42 Score=38.07 Aligned_cols=61 Identities=7% Similarity=0.098 Sum_probs=45.3
Q ss_pred HHHcChhhhhhhCCCCCCHHHHHhHc-------CCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 37 AVELGIAEAVEEKGSPITLNELASAL-------KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 37 a~~lglf~~L~~~~~~~t~~elA~~~-------g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
.-+.-|++.|.+.+++.|++||-+.+ +++..-+.|.|+.|+..|++.+....++..+|...
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEEeC
Confidence 36677888887655799999998765 46788999999999999999988532223457654
|
| >2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C* | Back alignment and structure |
|---|
Probab=88.25 E-value=0.43 Score=31.02 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=28.7
Q ss_pred hhhhhCCCCCCHHHHHhHc-----CCCcccHHHHHHHHhccCce
Q 018565 44 EAVEEKGSPITLNELASAL-----KCDPSLLQRIMRFLIHLKFF 82 (354)
Q Consensus 44 ~~L~~~~~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l 82 (354)
..+... ++.|++||++.+ +++..-+.|-|+ .+|++
T Consensus 12 ~ll~~~-~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 12 EIITSN-EIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHS-CCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE
T ss_pred HHHHcC-CCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE
Confidence 334432 799999999999 999999999999 56777
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=88.13 E-value=0.51 Score=40.01 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=44.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
.-|.-.|.. ++.|+++||+.+|+++.-+...|.-|...|+++... +++..+.+
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~----~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNLKEREVREKISEMARFVPVKIIN----DNTVVLDE 220 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEET----TTEEEECH
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEec----CCeEEecH
Confidence 556666666 899999999999999999999999999999998776 47776553
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=88.12 E-value=0.38 Score=38.99 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=48.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHc--------CCCcccHHHHHHHHhccCceeeccCC-CC---CceEecCcccc
Q 018565 38 VELGIAEAVEEKGSPITLNELASAL--------KCDPSLLQRIMRFLIHLKFFKEVPTS-QG---SMAFQQTPLSR 101 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~--------g~~~~~l~~lL~~L~~~g~l~~~~~~-~~---~~~y~~t~~~~ 101 (354)
+++-|+..|.. +|.+.-+|++.+ ++++..+.+.|+-|...|+++..... ++ --.|++|+.|+
T Consensus 3 l~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~ 76 (179)
T 1yg2_A 3 LPHVILTVLST--RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGR 76 (179)
T ss_dssp HHHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHH
T ss_pred hHHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHH
Confidence 35557777776 799999999998 68999999999999999999876421 11 12499999985
|
| >3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=0.34 Score=43.32 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=45.8
Q ss_pred HcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 39 ELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 39 ~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
+..|++.|.+. +.++|.++||+.+|++...+.+.++.|...|+..+..+ ...|++.+..
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~---~~GY~L~~~~ 64 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVN---HKGHLLQQLP 64 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEET---TTEEEEEECC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeC---CCeEEEecCc
Confidence 34577777432 25899999999999999999999999999999655432 2679887643
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=88.00 E-value=0.3 Score=35.96 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=47.9
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhH----cCCCcccHHHHHHHHhccCceeeccCC-CCC--ceEecCcccch
Q 018565 35 KCAVELGIAEAVEEKGSPITLNELASA----LKCDPSLLQRIMRFLIHLKFFKEVPTS-QGS--MAFQQTPLSRR 102 (354)
Q Consensus 35 ~~a~~lglf~~L~~~~~~~t~~elA~~----~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~~--~~y~~t~~~~~ 102 (354)
+-.+++-|+..|.. +|.+.-+|++. +++++..+.+.|+-|...|+++..... ++. ..|++|+.|+.
T Consensus 7 ~g~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~ 79 (108)
T 3l7w_A 7 ALLIEYLILAIVSK--HDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEK 79 (108)
T ss_dssp HHHHHHHHHHHHHH--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHH
Confidence 34455666777766 68887777666 589999999999999999999876421 111 13889998863
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=87.86 E-value=0.77 Score=40.00 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=66.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC--C--CC---cceEEEecccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD--G--VP---EADAAIIKWVL 257 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~--~--~~---~~D~i~~~~~l 257 (354)
...+||+=+|||.++.++++. .-+++.+|. ++.+...++ ..++++...|.+. . .| .||+|++--..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 456899999999999999983 468999999 777766654 4689999999765 1 12 49999996544
Q ss_pred ccCChHHHHHHHHHHHHh--cCCCCceEEEEeeee
Q 018565 258 HDWGDDECIKILKNCKEA--ITKDKGKVIIVEAII 290 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~--L~p~gG~lli~e~~~ 290 (354)
.. .+...++++.+.+. +.| +|.++|-=++.
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~-~Gi~v~WYPi~ 201 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFS-TGLYCVWYPVV 201 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCT-TSEEEEEEEES
T ss_pred CC--CcHHHHHHHHHHHhCccCC-CeEEEEEEecc
Confidence 32 22445556555553 346 78777754443
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=87.80 E-value=0.25 Score=46.77 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--eEecCcccchhh
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--AFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~~~~l~ 104 (354)
-+..|+..|.+. ++++|..+||+++++++..+.|+|+-|...|+|++.....+.+ ...+|+.++.+.
T Consensus 405 ~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 405 EEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 345677777652 1589999999999999999999999999999998865221111 377787776443
|
| >3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=87.42 E-value=0.32 Score=44.33 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=46.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecC
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQT 97 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t 97 (354)
+..|++.|.. +|.++++|++++|++...+...|-.|.-.|+++... ++.|+++
T Consensus 330 ~~~vl~~l~~--~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~~~~----Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGP--SPVGIDDLIRLSGISPAVVRTILLELELAGRLERHG----GSLVSLS 382 (382)
T ss_dssp HHHHHHHCCS--SCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECT----TSEEEC-
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEeCC----CceEecC
Confidence 4468888875 799999999999999999999999999999999887 4778764
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=87.31 E-value=0.48 Score=34.35 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhc
Q 018565 36 CAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIH 78 (354)
Q Consensus 36 ~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~ 78 (354)
.+.++||+..|.. ++.|-.|||+.+|++...+.|+=++|-.
T Consensus 44 l~~R~~l~~~L~~--ge~TQREIA~~lGiS~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLR--GEMSQRELKNELGAGIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHH--CCSCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHHCCChhhhhHHHHHHHH
Confidence 3567999999986 7899999999999999999988776643
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=1.1 Score=38.46 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=61.8
Q ss_pred CceEEEecCCccHHHHHHHHH-------CCCCeEEEeec----hHH------------------------hhh-------
Q 018565 190 IETLVDIGGNDGTTLRTLTKA-------FPRIRGINFDL----PHV------------------------VCV------- 227 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~~------- 227 (354)
+..|+|+|+-.|..+..+++. .++-++.++|. |+. +..
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 579999999999988876542 45678999983 221 000
Q ss_pred ccc----CCCeEEeecCCCC--C-----CC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 228 AEK----CHGVEHVGGDMFD--G-----VP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 228 a~~----~~~v~~~~~d~~~--~-----~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.+. .++|+++.|++.+ + .+ .+|++++-.=. -+.....+..+...|+| ||.+++
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~-GGvIv~ 215 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTK-GSIVAF 215 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEE-EEEEEE
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCC-CcEEEE
Confidence 001 3789999999976 2 12 37888775422 13456789999999999 766554
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=87.20 E-value=0.29 Score=44.83 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=43.2
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+.++..-+..|++.|. . +++|..|||+.+|+++.-+.++++-|...|++.+.+
T Consensus 14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp --------CCCSHHHHH-H-SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 45667777788999998 5 799999999999999999999999999999998865
|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
Probab=86.69 E-value=0.59 Score=39.63 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=38.5
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
-++|-++||+.+|+++..+.|.|+.|...|+++..+ +.+.....
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-----~~i~i~d~ 219 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-----NKIIVYNL 219 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-----SEEEESCH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-----CEEEEecH
Confidence 378999999999999999999999999999999887 56655543
|
| >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} | Back alignment and structure |
|---|
Probab=86.67 E-value=0.41 Score=36.92 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=40.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
-.+++.|.. ||.|+.+||+.+|++-....-.|..|...|++.+...
T Consensus 14 ~~ILE~Lk~--G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~ 59 (165)
T 2vxz_A 14 RDILALLAD--GCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAF 59 (165)
T ss_dssp HHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHh--CCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEE
Confidence 346777774 8999999999999999999999999999999988763
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=86.31 E-value=0.59 Score=43.10 Aligned_cols=51 Identities=12% Similarity=0.273 Sum_probs=43.2
Q ss_pred HHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 35 KCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 35 ~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..-+..|++.|... +++|..|||+.+|+++.-+.++++-|...|++.+.+
T Consensus 14 r~~n~~~il~~l~~~-~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHSS-CSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHhHHHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeec
Confidence 344445578888764 799999999999999999999999999999998864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=85.84 E-value=4 Score=36.11 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=52.7
Q ss_pred CceEEEecCCc-c-HHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCCcceEEEeccccccCChHHH
Q 018565 190 IETLVDIGGND-G-TTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVPEADAAIIKWVLHDWGDDEC 265 (354)
Q Consensus 190 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~~~~~ 265 (354)
..+|.=||+|. | .++..+.+.....+++++|. ++.++.+.+..-+.-...|..+ -..++|+|+++- |....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999773 3 33444554433238899998 6666665542222112233333 344689988754 44556
Q ss_pred HHHHHHHHHhcCCCCc
Q 018565 266 IKILKNCKEAITKDKG 281 (354)
Q Consensus 266 ~~~L~~~~~~L~p~gG 281 (354)
..+++++...++| +.
T Consensus 108 ~~vl~~l~~~l~~-~~ 122 (314)
T 3ggo_A 108 REIAKKLSYILSE-DA 122 (314)
T ss_dssp HHHHHHHHHHSCT-TC
T ss_pred HHHHHHHhhccCC-Cc
Confidence 7889999999998 54
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=85.50 E-value=0.95 Score=41.87 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=41.0
Q ss_pred cCCCceEEEecCCccHHHHHHH-HHCCC-CeEEEeec-hHHhhhccc---------C-CCeEEeecCC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLT-KAFPR-IRGINFDL-PHVVCVAEK---------C-HGVEHVGGDM 241 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~~v~~~~~d~ 241 (354)
+.+...++|||++.|.++..++ +..+. .+++.++. |...+..++ . ++++++..-.
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 3577899999999999999988 56665 78999998 766665443 2 5666665433
|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
Probab=85.43 E-value=0.55 Score=38.34 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++|-++||+.+|+++..+.|.|+.|...|+++..+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 68999999999999999999999999999999876
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=84.83 E-value=0.67 Score=43.15 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=45.0
Q ss_pred HHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 34 VKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 34 l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++..-+..|++.|... +++|..|||+.+|+++..+.++++-|...|++.+.+
T Consensus 36 ~r~~n~~~il~~l~~~-~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK-GPISRIDLSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4455556688888765 799999999999999999999999999999998865
|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
Probab=84.82 E-value=0.78 Score=37.81 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=37.7
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++|-++||+.+|+++..+.|.|+.|...|+++..+ +++...+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-----~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLSR-----GKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC-----CEEEEeC
Confidence 88999999999999999999999999999999876 6665543
|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.79 E-value=0.7 Score=37.70 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=37.6
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
++|-++||+.+|+++..+.|.|+.|...|+++..+ +.+.+.+
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-----~~i~i~d 187 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSGY-----GKIQLLD 187 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEESC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCC-----CEEEEeC
Confidence 68999999999999999999999999999999876 6666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 354 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 7e-74 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 2e-70 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 9e-61 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 9e-38 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 1e-31 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 4e-21 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 9e-16 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 2e-15 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 8e-13 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 4e-12 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-04 | |
| d1mkma1 | 75 | a.4.5.33 (A:1-75) Transcriptional regulator IclR, | 0.002 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 226 bits (578), Expect = 7e-74
Identities = 86/246 (34%), Positives = 142/246 (57%), Gaps = 6/246 (2%)
Query: 111 MAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMAC 170
+A + P + +H L + + F G W + + ++ NDAMA
Sbjct: 3 LAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMAS 62
Query: 171 DTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK 230
D++L A+ + C VFDG+E++VD+GG GTT + + + FP+++ I FD P VV
Sbjct: 63 DSKLINLALRD-CDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG 121
Query: 231 CHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDK--GKVIIVEA 288
+ + +VGGDMF +P ADA ++K++LH+W D +C++ILK CKEA+T D GKV I++
Sbjct: 122 SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181
Query: 289 IIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQS 348
+I++ +N+ ++L++D+ M GKER+ +EW + +AGF Y I+ + S
Sbjct: 182 VIDK-KKDENQVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238
Query: 349 LIEAFP 354
LIE +P
Sbjct: 239 LIEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 218 bits (555), Expect = 2e-70
Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 5/244 (2%)
Query: 111 MAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMAC 170
+A+F P +L W + V+ F HG + + D +++ N +M
Sbjct: 4 LASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD 63
Query: 171 DTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK 230
M+ ++E F+GI TLVD+GG G L + +P I+GINFDLP V+ A
Sbjct: 64 VCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 231 CHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290
G+EHVGGDMF VP+ DA I+K V H+W D++CI+ L NC +A+ GKVIIVE I+
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL-SPNGKVIIVEFIL 181
Query: 291 EEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT-SIHAVQSL 349
++ ++ + LD +M G+ER+ K+++ + + +GFS++ + +
Sbjct: 182 -PEEPNTSEESKLVSTLDNLMFITVG-GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239
Query: 350 IEAF 353
+E +
Sbjct: 240 MEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 193 bits (490), Expect = 9e-61
Identities = 90/242 (37%), Positives = 142/242 (58%), Gaps = 4/242 (1%)
Query: 110 NMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMA 169
+++A L+ V++ W+ L VL +G F+KA+G + Y D +K+ N M+
Sbjct: 4 SISALNLMNQDKVLMESWYHLKDAVL-DGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMS 62
Query: 170 CDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAE 229
+ + M+ I+E F+G+++LVD+GG G + T+ +P I+GINFDLPHV+ A
Sbjct: 63 DHSTITMKKILETYTG-FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP 121
Query: 230 KCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289
GVEHVGGDMF +P+ADA +KW+ HDW D+ C+K LKNC EA+ D GKVI+ E I
Sbjct: 122 SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEAL-PDNGKVIVAECI 180
Query: 290 IEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQSL 349
+ + + +D++M+AH GKER+ KE++ + + AGF + + +
Sbjct: 181 LPVAPD-SSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYI 239
Query: 350 IE 351
+E
Sbjct: 240 ME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 133 bits (336), Expect = 9e-38
Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 21/256 (8%)
Query: 112 AAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACD 171
A L + + L V+ G A+ +G+ W +AD A + + M+CD
Sbjct: 7 AWLDLNGAVSHADLAFTGL-LDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCD 65
Query: 172 TRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKC 231
LA A + + + ++D+GG +G L + P +RG +L A +
Sbjct: 66 EDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRR 123
Query: 232 HGVEHVGG--------DMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKV 283
+ AD ++ +VL +W D++ + IL+ C A+ ++
Sbjct: 124 FADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG-RL 182
Query: 284 IIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343
++++ E DG D F +LD+ M+ G+ R+ E + AG + + +
Sbjct: 183 LVLDRADVEGDGADRFF---STLLDLRMLTFMG-GRVRTRDEVVDLAGSAGLALASERTS 238
Query: 344 HAVQ-----SLIEAFP 354
+ S++E
Sbjct: 239 GSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 117 bits (294), Expect = 1e-31
Identities = 51/260 (19%), Positives = 95/260 (36%), Gaps = 34/260 (13%)
Query: 121 PVMLAPWHSLGTRV-------------LANGTSAFDKAHGKDVWSYAAADAAHSKLINDA 167
P WH L V + G ++ +GK + A +
Sbjct: 1 PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSL 60
Query: 168 MACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCV 227
+ACD +A A + + ++D+GG G + + P + ++ V
Sbjct: 61 LACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDT 118
Query: 228 AEK--------CHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKD 279
A G +ADA I+ +VL +W D + ++IL C EA+ +
Sbjct: 119 ARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEAL-EP 177
Query: 280 KGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339
G+++I E ++ + +F LD+ M+ G R+ ++WD + AG
Sbjct: 178 GGRILIHERDDLHENSFNEQF----TELDLRMLVFLG-GALRTREKWDGLAASAGLVVEE 232
Query: 340 ITSIHAVQ-----SLIEAFP 354
+ + + SL+ P
Sbjct: 233 VRQLPSPTIPYDLSLLVLAP 252
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 84.6 bits (209), Expect = 4e-21
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 16 DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKC---DPSLLQRI 72
A+ ++K+++ F + +K AVE+ I ++ G PI+L+ L S L+ ++R+
Sbjct: 8 KAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRL 67
Query: 73 MRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLMRHGE 108
MR+L H FF+ + + S + T S L+R +
Sbjct: 68 MRYLAHNGFFEIITKEEES--YALTVASELLVRGSD 101
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 70.2 bits (172), Expect = 9e-16
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 12 KEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSP---ITLNELASALKCD--- 65
+ ED A + AV+ A++L + E + + P ++ +E+AS L
Sbjct: 1 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH 60
Query: 66 ---PSLLQRIMRFLIHLKFFKEVPTSQGS----MAFQQTPLSRRLMR 105
P+ L R++R L + + + + + L+
Sbjct: 61 SDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVP 107
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 69.0 bits (169), Expect = 2e-15
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRI 72
D + K + ++ A L + + + TL LA P L R+
Sbjct: 3 PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHPQALSRL 60
Query: 73 MRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103
+R L + + + + T L L
Sbjct: 61 VRHLTVVGVLEG--GEKQGRPLRPTRLGMLL 89
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 62.1 bits (151), Expect = 8e-13
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEE--KGSPITLNELASALKCD----P 66
+++A + + ++K A+EL + E + + G+ I+ E+AS L P
Sbjct: 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62
Query: 67 SLLQRIMRFLIHLKFFKEVPTSQ----GSMAFQQTPLSRRLMR 105
+L R++R L +Q + +++ L++
Sbjct: 63 VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVK 105
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 59.0 bits (143), Expect = 4e-12
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 24 YVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFK 83
+ VV+ A L + + + T+ LA+ P L R++R L+ + +
Sbjct: 8 RLGSLHTPMVVRTAATLRLVDHILAG--ARTVKALAARTDTRPEALLRLIRHLVAIGLLE 65
Query: 84 EVPTSQGSMAFQQTPLSRRL 103
E + F T + L
Sbjct: 66 EDAPGE----FVPTEVGELL 81
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 17/162 (10%)
Query: 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFD--------LPHVVCVAEKCHGVEHVGGDMF 242
++DIG G T + G++ E + +
Sbjct: 18 HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 243 DGVPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKS 302
D ++ H + D K ++ + K G+ ++V+ ED +D
Sbjct: 78 FPDDSFDIITCRYAAHHFSDVR--KAVREVARVL-KQDGRFLLVDHYAPEDPVLDEFVNH 134
Query: 303 VRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344
+ + D + +E SL EW + + +I +
Sbjct: 135 LNRLRD------PSHVRESSLSEWQAMFSANQLAYQDIQKWN 170
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 13/160 (8%)
Query: 191 ETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADA 250
E ++D+ G ++ + ++ VA +
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKKVVAFDLT-EDILKVARAFIEGNGHQQVEYVQGDAEQM 75
Query: 251 AIIKWVLHDWGDDECIKILKNCKEAIT------KDKGKVIIVEAIIEEDDGVDNKFKSVR 304
H N ++ K G++++V+ E+D D + V
Sbjct: 76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVE 135
Query: 305 LMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344
D + +W +L +AGF + H
Sbjct: 136 KERDYSHH------RAWKKSDWLKMLEEAGFELEELHCFH 169
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 75 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 34.2 bits (79), Expect = 0.002
Identities = 7/48 (14%), Positives = 16/48 (33%)
Query: 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87
I + + + ++++E+A S + M L F
Sbjct: 8 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKD 55
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 354 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.82 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.8 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.78 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.73 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.73 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.72 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.68 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.67 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.67 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.64 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.63 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.62 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.61 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.61 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.58 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.54 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.51 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.48 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.47 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.47 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.46 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.44 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.44 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.42 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.42 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.38 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.35 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.31 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.3 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.29 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.28 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.28 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.28 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.28 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.28 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.24 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.19 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.16 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.08 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.08 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.06 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.03 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.02 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.01 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.9 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.9 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.87 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.81 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.71 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.59 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.54 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.48 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.43 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.41 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.37 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.37 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.36 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.3 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.26 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.25 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.24 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.23 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.21 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.21 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.18 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.17 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.16 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 98.14 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.14 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.13 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.1 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.08 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.04 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.02 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.95 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.9 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.87 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.67 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.62 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.56 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.53 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.53 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.34 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 97.33 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 97.29 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 97.17 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.16 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 97.13 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.05 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.02 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 97.01 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.87 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.87 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 96.71 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 96.7 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 96.67 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 96.57 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 96.56 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 96.45 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.41 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 96.39 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 96.37 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 96.34 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 96.22 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.98 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 95.94 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 95.92 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.76 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 95.75 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 95.74 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.6 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.59 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 95.58 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.47 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.46 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 95.43 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 95.41 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 95.32 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 95.22 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 95.22 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 95.2 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.09 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 95.07 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 95.01 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.99 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 94.94 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 94.91 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 94.8 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 94.76 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 94.67 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 94.59 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 94.56 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 94.44 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 94.34 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 94.24 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 94.11 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 93.99 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 93.97 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 93.88 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 93.85 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 93.79 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 93.7 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.67 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 93.52 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.51 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 93.46 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 93.46 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 93.41 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 93.32 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.14 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 93.05 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.98 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.78 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.7 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.64 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 92.64 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 92.36 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 92.3 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.18 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 92.18 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 91.83 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 91.37 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 91.06 | |
| d1s6la1 | 60 | Alkylmercury lyase MerB {Escherichia coli [TaxId: | 90.97 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 90.73 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 90.63 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 90.41 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.29 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.29 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.12 | |
| d3e5ua1 | 80 | Chlorophenol reduction protein CprK {Desulfitobact | 90.11 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 90.08 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.99 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.84 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 89.7 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 89.57 | |
| d2p8ta1 | 69 | Hypothetical protein PH0730 {Pyrococcus horikoshii | 89.1 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.02 | |
| d1y0ua_ | 89 | Putative arsenical resistance operon repressor AF0 | 88.45 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.44 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 88.36 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 88.09 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.84 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 86.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.6 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 86.52 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 86.46 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 86.07 | |
| d1cf7a_ | 67 | Cell cycle transcription factor E2F-4 {Human (Homo | 86.02 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 85.99 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.48 | |
| d2bgca1 | 100 | Listeriolysin regulatory protein PrfA, C-terminal | 85.04 | |
| d1okra_ | 120 | Methicillin resistance regulatory protein MecI {St | 84.96 | |
| d2fnaa1 | 73 | Hypothetical protein SSO1545, C-terminal domain {S | 83.63 | |
| d1mzba_ | 134 | Ferric uptake regulation protein, FUR {Pseudomonas | 83.55 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.13 | |
| d1bl0a1 | 54 | MarA {Escherichia coli [TaxId: 562]} | 83.02 | |
| d1u5ta2 | 68 | Vacuolar sorting protein SNF8 {Baker's yeast (Sacc | 82.73 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 82.63 | |
| d1in4a1 | 75 | Holliday junction helicase RuvB {Thermotoga mariti | 82.56 | |
| d2g9wa1 | 122 | Hypothetical protein Rv1846c {Mycobacterium tuberc | 80.66 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 80.4 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.8e-45 Score=320.27 Aligned_cols=241 Identities=34% Similarity=0.643 Sum_probs=207.5
Q ss_pred chHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCC
Q 018565 110 NMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDG 189 (354)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 189 (354)
|+++++.+.++|..+..|.+|.++++++++++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.++ .+++
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~ 81 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEG 81 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTT
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccC
Confidence 788999999889999999999999999887889999999999999999999999999999988888899999888 3578
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHHH
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L 269 (354)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|++|+|+++++||+|+++++.++|
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL 161 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 161 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence 89999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEc-CCcee
Q 018565 270 KNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI-HAVQS 348 (354)
Q Consensus 270 ~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~ 348 (354)
++++++|+| ||+|+|+|.+.++... .++.......+|+.|+.. .+|+.||.+||.++|++|||+.+++++. .+..+
T Consensus 162 ~~~~~aL~p-gg~llI~e~v~~~~~~-~~~~~~~~~~~d~~m~~~-~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~ 238 (244)
T d1fp1d2 162 SNCHKALSP-NGKVIIVEFILPEEPN-TSEESKLVSTLDNLMFIT-VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLG 238 (244)
T ss_dssp HHHHHHEEE-EEEEEEEEEEECSSCC-SSHHHHHHHHHHHHHHHH-HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEE
T ss_pred HHHHHHcCC-CcEEEEEEEEecCCCC-CchHHHHHHHHHHHHHhh-CCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEE
Confidence 999999999 9999999999987665 432223345678888876 7899999999999999999999999866 57899
Q ss_pred EEEEeC
Q 018565 349 LIEAFP 354 (354)
Q Consensus 349 ~i~~~~ 354 (354)
+||+||
T Consensus 239 viE~~K 244 (244)
T d1fp1d2 239 VMEFYK 244 (244)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999998
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.6e-44 Score=311.50 Aligned_cols=240 Identities=35% Similarity=0.712 Sum_probs=214.0
Q ss_pred chHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCC
Q 018565 110 NMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDG 189 (354)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 189 (354)
++.+++.+..+|.++.+|..|+++++++.+++|+.++|+++|+|+.++|+..+.|+++|...+......+.+. .+.+.+
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~-~~~~~~ 80 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDC-DFVFDG 80 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTC-HHHHTT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhh-cccccC
Confidence 4677888888899999999999999999888999999999999999999999999999998877665655543 222567
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHHH
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~L 269 (354)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|++|+|+++++||+|+++++.++|
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL 160 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 160 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHH
Confidence 88999999999999999999999999999999999999988899999999999998899999999999999999999999
Q ss_pred HHHHHhcCCCC---ceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcCCc
Q 018565 270 KNCKEAITKDK---GKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAV 346 (354)
Q Consensus 270 ~~~~~~L~p~g---G~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 346 (354)
++++++|+| | |+++|+|.+.++... .+........++++|+. .+|+.||.+||.++|++|||+.++++++++.
T Consensus 161 ~~~~~al~p-gg~~~~lli~e~~~~~~~~-~~~~~~~~~~~dl~m~~--~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~ 236 (244)
T d1fp2a2 161 KKCKEAVTN-DGKRGKVTIIDMVIDKKKD-ENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKISPLTGF 236 (244)
T ss_dssp HHHHHHHSG-GGCCCEEEEEECEECTTTS-CHHHHHHHHHHHHHGGG--GTCCCEEHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred HHHHHHcCc-ccCCcEEEEEEeecCCCCC-CchHHHHHHHHHHHHHh--CCCcCCCHHHHHHHHHHcCCceEEEEECCCC
Confidence 999999999 8 889999999988765 43223334567777765 5799999999999999999999999999999
Q ss_pred eeEEEEeC
Q 018565 347 QSLIEAFP 354 (354)
Q Consensus 347 ~~~i~~~~ 354 (354)
.++||+||
T Consensus 237 ~svIE~~p 244 (244)
T d1fp2a2 237 LSLIEIYP 244 (244)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.6e-42 Score=302.55 Aligned_cols=240 Identities=37% Similarity=0.721 Sum_probs=218.5
Q ss_pred cchHHHHHHhcCchhhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccC
Q 018565 109 NNMAAFILLESSPVMLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFD 188 (354)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 188 (354)
.|+++++.+..++.+++.|.+|++++|+|+ ++|+.++|+++|+|+.++|+..+.|+++|...+....+.+++.+++ .+
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~ 80 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FE 80 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TS
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-cc
Confidence 478899988888889999999999999998 5999999999999999999999999999999888788889988883 35
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKI 268 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~ 268 (354)
+..+|||||||+|.++..+++++|+++++++|+|++++.++..+|++++.+|+++++|.+|+|++.+++|+|+++++.++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~i 160 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKF 160 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHH
Confidence 67899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcCCcee
Q 018565 269 LKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHAVQS 348 (354)
Q Consensus 269 L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 348 (354)
|++++++|+| ||+++|+|.+.++... .+........+|+.|+..+.+|+.||.+||.++|++|||+.+++++.+...+
T Consensus 161 L~~~~~al~p-gg~~li~d~~~~~~~~-~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~ 238 (243)
T d1kyza2 161 LKNCYEALPD-NGKVIVAECILPVAPD-SSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238 (243)
T ss_dssp HHHHHHHCCS-SSCEEEEECEECSSCC-CCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEE
T ss_pred HHHHHHhcCC-CceEEEEEEEecCCCC-CchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCE
Confidence 9999999999 9999999999887655 4323334467888888876789999999999999999999999999999999
Q ss_pred EEEE
Q 018565 349 LIEA 352 (354)
Q Consensus 349 ~i~~ 352 (354)
+||.
T Consensus 239 viE~ 242 (243)
T d1kyza2 239 IMEF 242 (243)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9995
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=2.6e-39 Score=284.59 Aligned_cols=239 Identities=23% Similarity=0.405 Sum_probs=204.1
Q ss_pred CcchHHHHHHhcCch-hhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCc
Q 018565 108 ENNMAAFILLESSPV-MLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEV 186 (354)
Q Consensus 108 ~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~ 186 (354)
|.+++.++.+..... ...+|..|.+++|+|.+ +|...+|.++|+|+.++|+....|+++|...+....+.+++.++
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~-~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-- 78 (256)
T d1qzza2 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-- 78 (256)
T ss_dssp TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCC-SHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--
T ss_pred cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCCc-hhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--
Confidence 557778776542222 23379999999999984 89999999999999999999999999999988888899999999
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCCCCC-cceEEEeccccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGVP-EADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~~-~~D~i~~~~~lh 258 (354)
+++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|++++.| +||+|++.++||
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh 158 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL 158 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccc
Confidence 88899999999999999999999999999999999988877654 5899999999999766 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
+|+++++.++|++++++||| ||+++|+|.+.++... . .......+++.|+.. .+|+.||.+||.++|+++||+++
T Consensus 159 ~~~d~~~~~lL~~i~~~Lkp-gG~llI~d~~~~~~~~-~--~~~~~~~~d~~ml~~-~~g~~rt~~e~~~ll~~AGf~~~ 233 (256)
T d1qzza2 159 NWSDEDALTILRGCVRALEP-GGRLLVLDRADVEGDG-A--DRFFSTLLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALA 233 (256)
T ss_dssp GSCHHHHHHHHHHHHHHEEE-EEEEEEEECCH----------HHHHHHHHHHHHHH-HSCCCCCHHHHHHHHHTTTEEEE
T ss_pred ccCcHHHHHHHHHHHhhcCC-cceeEEEEeccCCCCc-c--cHHHHHHHHHHHHhh-CCCccCCHHHHHHHHHHCCCcee
Confidence 99999999999999999999 9999999987665443 2 122456678998887 78999999999999999999999
Q ss_pred EEEEcCC-----ceeEEEEeC
Q 018565 339 NITSIHA-----VQSLIEAFP 354 (354)
Q Consensus 339 ~~~~~~~-----~~~~i~~~~ 354 (354)
++++.+. .+++||+.|
T Consensus 234 ~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 234 SERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEECCSSCSSCEEEEEEEE
T ss_pred EEEEeCCcCccCceEEEEEEe
Confidence 9988643 478999864
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=7.8e-38 Score=275.09 Aligned_cols=223 Identities=22% Similarity=0.413 Sum_probs=194.8
Q ss_pred hhhhhhhHHHhHhcCCCchhhhhcCCChhHHHhhChHHHHHHHHHhhhchhhhHHHHHhcCCCccCCCceEEEecCCccH
Q 018565 123 MLAPWHSLGTRVLANGTSAFDKAHGKDVWSYAAADAAHSKLINDAMACDTRLAMRAIIEGCPEVFDGIETLVDIGGNDGT 202 (354)
Q Consensus 123 ~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~ 202 (354)
...+|.+|++++|+|++ +|...+|+++|+|+.++|+....|..+|...+....+.+++.++ +.+..+|||||||+|.
T Consensus 17 ~~~~~~~L~~~vr~G~~-~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~ 93 (253)
T d1tw3a2 17 ADISFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGG 93 (253)
T ss_dssp HGGGGGGHHHHHHHCCC-CHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSH
T ss_pred ccccHHHHHHHHHhCCc-hhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCH
Confidence 34578999999999984 79999999999999999999999999999988888899999999 8889999999999999
Q ss_pred HHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCCCCC-cceEEEeccccccCChHHHHHHHHHHHH
Q 018565 203 TLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFDGVP-EADAAIIKWVLHDWGDDECIKILKNCKE 274 (354)
Q Consensus 203 ~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~~~~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~ 274 (354)
++..+++++|+++++++|+|++++.+++ .++++++.+|++++.| +||+|+++++||+|+++++.++|+++++
T Consensus 94 ~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~ 173 (253)
T d1tw3a2 94 FAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAE 173 (253)
T ss_dssp HHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHH
Confidence 9999999999999999999888887764 5799999999998655 5999999999999999999999999999
Q ss_pred hcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEcCC-----ceeE
Q 018565 275 AITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSIHA-----VQSL 349 (354)
Q Consensus 275 ~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~-----~~~~ 349 (354)
+||| ||+|+|.|...++... . ......+++.|+.. .+|+.||.+||.++|+++||+++++.+++. ..++
T Consensus 174 ~LkP-GG~l~i~e~~~~~~~~-~---~~~~~~~dl~~~~~-~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~l 247 (253)
T d1tw3a2 174 ALEP-GGRILIHERDDLHENS-F---NEQFTELDLRMLVF-LGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSL 247 (253)
T ss_dssp TEEE-EEEEEEEECCBCGGGC-C---SHHHHHHHHHHHHH-HSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEE
T ss_pred hcCC-CcEEEEEeccCCCCCc-c---hhHHHHhhHHHHhh-CCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEE
Confidence 9999 9999999987655443 2 22445678888877 789999999999999999999999887643 2556
Q ss_pred EEEeC
Q 018565 350 IEAFP 354 (354)
Q Consensus 350 i~~~~ 354 (354)
|+..|
T Consensus 248 i~~~P 252 (253)
T d1tw3a2 248 LVLAP 252 (253)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66544
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=2.1e-20 Score=160.12 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=122.6
Q ss_pred CCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCCcceEEEeccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA--FPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVPEADAAIIKWV 256 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~~~D~i~~~~~ 256 (354)
+++.+|||||||+|..+..+++. .|+.+++++|+ ++|++.|++ ..++++..+|+.+ +.+.+|++++..+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 46789999999999999999986 48999999999 999999874 4678888889887 6677999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhh-ccc------------CCcccCCH
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMM-AHT------------NKGKERSL 323 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~-~~~------------~~g~~~t~ 323 (354)
+|+++.++..++|++++++||| ||.+++.|...+.... ..... ......+... ... ..-..++.
T Consensus 118 l~~~~~~d~~~~l~~i~~~Lkp-gG~li~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 194 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNP-NGVLVLSEKFRFEDTK-INHLL-IDLHHQFKRANGYSELEVSQKRTALENVMRTDSI 194 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEE-EEEEEEEEECCCSSHH-HHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCH
T ss_pred ccccChhhHHHHHHHHHHhCCC-Cceeecccccccccch-hhhHH-HHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCH
Confidence 9999988889999999999999 9999999987665432 11000 0000000000 000 00134688
Q ss_pred HHHHHHHHHcCCceeEEEEcCCceeEEEEeC
Q 018565 324 KEWDYVLRQAGFSRYNITSIHAVQSLIEAFP 354 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 354 (354)
+++..+|+++||+.++++---.....+.|+|
T Consensus 195 ~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 195 ETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 9999999999999998865444455565554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=1.8e-19 Score=159.57 Aligned_cols=155 Identities=13% Similarity=0.169 Sum_probs=121.2
Q ss_pred hhHHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C
Q 018565 174 LAMRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G 244 (354)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~ 244 (354)
.+...+....+ ++++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +
T Consensus 54 ~~~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~ 130 (282)
T d2o57a1 54 WLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 130 (282)
T ss_dssp HHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence 34455666666 7889999999999999999999875 678999999 888887764 4789999999998 6
Q ss_pred CC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCC
Q 018565 245 VP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERS 322 (354)
Q Consensus 245 ~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t 322 (354)
++ .||+|++..++||+++. .++|++++++||| ||++++.+....+... .. ....+.... ......+
T Consensus 131 ~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lkp-gG~l~~~~~~~~~~~~-~~------~~~~~~~~~--~~~~~~s 198 (282)
T d2o57a1 131 CEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP-RGVMAITDPMKEDGID-KS------SIQPILDRI--KLHDMGS 198 (282)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE-EEEEEEEEEEECTTCC-GG------GGHHHHHHH--TCSSCCC
T ss_pred ccccccchhhccchhhhccCH--HHHHHHHHHhcCC-CcEEEEEEeecCCCCc-hh------HHHHHHHHh--ccCCCCC
Confidence 65 39999999999999865 4899999999999 9999999988766543 21 111111111 1123457
Q ss_pred HHHHHHHHHHcCCceeEEEEc
Q 018565 323 LKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.+++.++++++||+.+++...
T Consensus 199 ~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 199 LGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHcCCceEEEEEC
Confidence 899999999999999887764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.82 E-value=5.3e-20 Score=158.09 Aligned_cols=152 Identities=18% Similarity=0.334 Sum_probs=116.4
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--c
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--E 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~ 247 (354)
.+++... ++++.+|||||||+|.++..++++. .+++++|+ +++++.|++ .++++++.+|+.+ +++ .
T Consensus 6 ~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 6 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 3444455 7788999999999999999999885 47999999 888888764 5789999999998 665 4
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHh-hcccCCcccCCHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVM-MAHTNKGKERSLKEW 326 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~g~~~t~~e~ 326 (354)
||+|++..++||+++.. ++|++++++||| ||++++.++..+.... + ....+... .........++.++|
T Consensus 82 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp-gG~l~i~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~ 151 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKK-GGQLLLVDNSAPENDA----F---DVFYNYVEKERDYSHHRAWKKSDW 151 (231)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEE-EEEEEEEEEEBCSSHH----H---HHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred cccccccccccccCCHH--HHHHHHHHhcCC-CcEEEEEeCCCCCCHH----H---HHHHHHHHhhcccCcccCCCHHHH
Confidence 99999999999998754 889999999999 9999999887654322 1 11111111 111133456789999
Q ss_pred HHHHHHcCCceeEEEEc
Q 018565 327 DYVLRQAGFSRYNITSI 343 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~ 343 (354)
.++|+++||+++++...
T Consensus 152 ~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 152 LKMLEEAGFELEELHCF 168 (231)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCEEEEEEEe
Confidence 99999999998876543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.80 E-value=1.9e-19 Score=156.74 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=118.6
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCC--cc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVP--EA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~--~~ 248 (354)
..+++.++ ..+..+|||+|||+|..+..++.++.+ +++++|. +++++.|++ ..++++..+|+.+ +++ .|
T Consensus 83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence 45566666 567889999999999999998877654 7899999 899998875 4568999999987 544 39
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDY 328 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ 328 (354)
|+|++..++||+++++..++|++++++|+| ||.++|.|.+...... . .+. . .+...|+.++|.+
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp-gG~iii~e~~~~~~~~-~---------~d~----~-d~~~~rs~~~~~~ 223 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP-NGYIFFKENCSTGDRF-L---------VDK----E-DSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEBC--CCE-E---------EET----T-TTEEEBCHHHHHH
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCC-CcEEEEEecCCCCCcc-e---------ecc----c-CCceeCCHHHHHH
Confidence 999999999999999999999999999999 9999999876554322 1 111 0 3345679999999
Q ss_pred HHHHcCCceeEEEE
Q 018565 329 VLRQAGFSRYNITS 342 (354)
Q Consensus 329 ll~~aGf~~~~~~~ 342 (354)
+|+++||++++...
T Consensus 224 l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 224 LFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHTCCEEEEEE
T ss_pred HHHHcCCEEEEEEe
Confidence 99999999988765
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.1e-19 Score=153.52 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=114.1
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
..+..+|||||||+|..+..+++..+ .+++++|+ +++++.|++ ..+++|.++|+.+ +++ .||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999999999999887665 48999999 999988765 3568999999988 543 4999999999
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCc
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFS 336 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~ 336 (354)
+||+++++..++|++++++||| ||.+++.+...++... + + .. .....++.++|.++|+++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~-~G~~~i~~~~~~~~~~----~-------~----~~-~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP-NGIIVIKDNMAQEGVI----L-------D----DV-DSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE-EEEEEEEEEEBSSSEE----E-------E----TT-TTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcCC-cceEEEEEcccccccc----c-------c----cC-CceeeCCHHHHHHHHHHcCCE
Confidence 9999998888999999999999 9999999877654322 0 0 01 334567899999999999999
Q ss_pred eeEEEEc
Q 018565 337 RYNITSI 343 (354)
Q Consensus 337 ~~~~~~~ 343 (354)
+++....
T Consensus 200 ii~~~~q 206 (222)
T d2ex4a1 200 LLAEERQ 206 (222)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9987764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.1e-18 Score=151.20 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=117.8
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC--
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP-- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~-- 246 (354)
..+.+.+. +.++.+|||||||+|..+..++++++ .+++++|+ +.+++.+++ .++++|+.+|+.+..+
T Consensus 23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 34556666 78899999999999999999998865 79999999 888887764 5789999999988433
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHH
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~ 326 (354)
+||+|++..++|++++. .++|++++++||| ||++++.+........ .. ...... .........+..++
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkP-GG~l~i~~~~~~~~~~-~~---~~~~~~-----~~~~~~~~~~~~~~ 167 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKP-GGIMLIGEPYWRQLPA-TE---EIAQAC-----GVSSTSDFLTLPGL 167 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE-EEEEEEEEEEETTCCS-SH---HHHHTT-----TCSCGGGSCCHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCc-CcEEEEEeccccCCCC-hH---HHHHHh-----ccCCCcccCCHHHH
Confidence 49999999999999865 4899999999999 9999999887655433 21 111100 01022245689999
Q ss_pred HHHHHHcCCceeEEEEc
Q 018565 327 DYVLRQAGFSRYNITSI 343 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~~ 343 (354)
..+++++||+++.....
T Consensus 168 ~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 168 VGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHcCCEEEEEEeC
Confidence 99999999999876654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=6.7e-19 Score=151.55 Aligned_cols=151 Identities=19% Similarity=0.316 Sum_probs=116.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC--c
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP--E 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~ 247 (354)
.+++.++ ++++.+|||||||+|.++..++++. .+++++|+ +.+++.|++ .+++.++.+|+.+ +++ +
T Consensus 7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 3455566 8899999999999999999999975 47999999 888888764 4689999999988 665 3
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhcc-HHhhcccCCcccCCHHHH
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLD-MVMMAHTNKGKERSLKEW 326 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~~~t~~e~ 326 (354)
||+|++..++|++++. .++|++++++||| ||++++.+...++... ...+++ +.........+..+..+|
T Consensus 83 fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp-gG~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDV--RKAVREVARVLKQ-DGRFLLVDHYAPEDPV-------LDEFVNHLNRLRDPSHVRESSLSEW 152 (234)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE-EEEEEEEEECBCSSHH-------HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred cceeeeeceeecccCH--HHHHHHHHHeeCC-CcEEEEEEcCCCCCHH-------HHHHHHHHHhhCCCcccccCCHHHH
Confidence 9999999999998765 5899999999999 9999999876554321 111111 111111134466789999
Q ss_pred HHHHHHcCCceeEEEE
Q 018565 327 DYVLRQAGFSRYNITS 342 (354)
Q Consensus 327 ~~ll~~aGf~~~~~~~ 342 (354)
..+++++||.+.++..
T Consensus 153 ~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 153 QAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCceeEEEE
Confidence 9999999998776544
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.73 E-value=1.6e-18 Score=127.17 Aligned_cols=93 Identities=29% Similarity=0.499 Sum_probs=82.4
Q ss_pred ccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCc---ccHHHHHHHHhccCceeeccCCC
Q 018565 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDP---SLLQRIMRFLIHLKFFKEVPTSQ 89 (354)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~---~~l~~lL~~L~~~g~l~~~~~~~ 89 (354)
|.++++..++++++||+.+++|++|+++||||.|.+.++|+|++|||+++|+++ +.+.|+||+|++.|+|++..++
T Consensus 5 e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~~- 83 (101)
T d1fp2a1 5 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKE- 83 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESS-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecCC-
Confidence 566788899999999999999999999999999986668999999999999976 4599999999999999865432
Q ss_pred CCceEecCcccchhhcCC
Q 018565 90 GSMAFQQTPLSRRLMRHG 107 (354)
Q Consensus 90 ~~~~y~~t~~~~~l~~~~ 107 (354)
+++|++|+.|++|++++
T Consensus 84 -~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 84 -EESYALTVASELLVRGS 100 (101)
T ss_dssp -SEEEEECHHHHTTSTTS
T ss_pred -CCeEecCHHHHHhhcCC
Confidence 47899999999988764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=1.8e-17 Score=139.73 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=102.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEeccccccCChHH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGDDE 264 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~~~ 264 (354)
+..+|||||||+|.++..+. +.+++|+ +.+++.+++ .++++..+|+.+ +.+ .||+|++.++||++++.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~- 107 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 107 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc-
Confidence 45689999999999887773 3589999 999998885 579999999988 655 49999999999999864
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEE
Q 018565 265 CIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 265 ~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 342 (354)
.++|++++++|+| ||.+++.++....... ..............+...+|.+++.++|+++||+.+++..
T Consensus 108 -~~~l~~~~~~L~p-gG~l~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 -ERALKEAYRILKK-GGYLIVGIVDRESFLG-------REYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp -HHHHHHHHHHEEE-EEEEEEEEECSSSHHH-------HHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -ccchhhhhhcCCC-CceEEEEecCCcchhH-------HhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4899999999999 9999998764321100 0000011101111344567999999999999999988765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=3.4e-17 Score=143.95 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=123.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 248 (354)
+.+++.+. +.++.+|||||||+|.++..++++++ .+++++|+ ++.++.+++ ..++.+...|..+....|
T Consensus 42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 56777777 88999999999999999999888764 69999999 777776654 467888878876654569
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc----ch-hhhhhhccH-HhhcccCCcccCC
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN----KF-KSVRLMLDM-VMMAHTNKGKERS 322 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~----~~-~~~~~~~~l-~~~~~~~~g~~~t 322 (354)
|.|++..+++|++++....+|++++++||| ||+++|.+.+...... .. .. .......++ .-... ++|..++
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp-gG~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~dfI~kyif-Pgg~lPS 195 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA-DGRMTVQSSVSYHPYE-MAARGKKLSFETARFIKFIVTEIF-PGGRLPS 195 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT-TCEEEEEEEECCCHHH-HHTTCHHHHHHHHHHHHHHHHHTS-TTCCCCC
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCC-CceEEEEEeeccCcch-hhhcccccccccccccchhhhhcc-CCCcccc
Confidence 999999999999988888999999999999 9999998765443211 00 00 000111122 12233 7788899
Q ss_pred HHHHHHHHHHcCCceeEEEEc
Q 018565 323 LKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 323 ~~e~~~ll~~aGf~~~~~~~~ 343 (354)
.+++.+.++++||.+.++..+
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred hHhhhhhHHhhccccceeeec
Confidence 999999999999999988765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=1.9e-16 Score=139.04 Aligned_cols=163 Identities=10% Similarity=0.106 Sum_probs=125.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCcc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~~ 248 (354)
+.+++.+. +.++.+|||||||.|.++..+++++ +++++++++ ++.++.+++ .+++++..+|+.+...+|
T Consensus 52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 56677777 8899999999999999999999988 589999999 766666543 689999999987643569
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCC---Ccch-hhhhhhcc-HHhhcccCCcccCCH
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGV---DNKF-KSVRLMLD-MVMMAHTNKGKERSL 323 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~---~~~~-~~~~~~~~-l~~~~~~~~g~~~t~ 323 (354)
|.|++..++.|+..+....++++++++||| ||++++........... ..+. .......+ +.-... ++|...+.
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~Lkp-gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiF-pgg~lPsl 206 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA-DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF-PGGRLPSI 206 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT-TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS-TTCCCCCH
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCC-CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhc-cCCCCCCh
Confidence 999999999999877777999999999999 99999988764321100 0000 00111112 222334 78888999
Q ss_pred HHHHHHHHHcCCceeEEEEcC
Q 018565 324 KEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 324 ~e~~~ll~~aGf~~~~~~~~~ 344 (354)
+++..+++++||++.++..++
T Consensus 207 ~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 207 PMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHHHTTTCEEEEEEECH
T ss_pred hhHHHHHHHhchhhcccccch
Confidence 999999999999999987763
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=3.3e-16 Score=137.99 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=123.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCCc
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVPE 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~~ 247 (354)
.+.+++.+. +.++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ ..++++...|+..+.++
T Consensus 50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 126 (291)
T d1kpia_ 50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 126 (291)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence 356677777 88999999999999999999999885 69999999 666665543 57889888887655456
Q ss_pred ceEEEeccccccCCh-------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc------chhhhhhhccH-Hhhc
Q 018565 248 ADAAIIKWVLHDWGD-------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN------KFKSVRLMLDM-VMMA 313 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~------~~~~~~~~~~l-~~~~ 313 (354)
||.|++..++.|+++ +....++++++++||| ||++++.....++... .. |.. .....++ ....
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp-gG~~~l~~i~~~~~~~-~~~~~~~~p~~-~~~~~~fi~kyi 203 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD-DGRMLLHTITIPDKEE-AQELGLTSPMS-LLRFIKFILTEI 203 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT-TCEEEEEEEECCCHHH-HHHHTCCCCHH-HHHHHHHHHHHT
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC-CCceEEEEEeccCcch-hhhccCCCchh-hcccchHHHHHh
Confidence 999999999988876 3457999999999999 9999998887654321 00 000 0111111 2223
Q ss_pred ccCCcccCCHHHHHHHHHHcCCceeEEEEcC
Q 018565 314 HTNKGKERSLKEWDYVLRQAGFSRYNITSIH 344 (354)
Q Consensus 314 ~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~ 344 (354)
. ++|...+.+++...++++||++.++..++
T Consensus 204 F-pgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 204 F-PGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp C-TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred c-CCCCCCCHHHHHhhhcccccccceeeecc
Confidence 4 78889999999999999999999887764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.68 E-value=1.6e-16 Score=140.24 Aligned_cols=100 Identities=22% Similarity=0.230 Sum_probs=87.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~~~l 257 (354)
...+.+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++|..+|+.+ +++ +||+|++.+++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 56778999999999999999999887 478999999 888888875 4479999999988 555 49999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
||++++. .+|++++++||| ||.+++.|+.
T Consensus 105 ~~~~d~~--~~l~~~~~~Lkp-gG~lii~~~~ 133 (281)
T d2gh1a1 105 LHMTTPE--TMLQKMIHSVKK-GGKIICFEPH 133 (281)
T ss_dssp GGCSSHH--HHHHHHHHTEEE-EEEEEEEECC
T ss_pred hcCCCHH--HHHHHHHHHcCc-CcEEEEEECC
Confidence 9998764 789999999999 9999999854
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.67 E-value=3.1e-16 Score=133.80 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=104.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-CCC-cceEEEeccccccCChH
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-GVP-EADAAIIKWVLHDWGDD 263 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~~~~~ 263 (354)
.+.+|||||||+|.++..++++. .+++++|+ +++++.+++ ..++.+..+|+.+ +.+ .||+|++..++||++++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d~ 97 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 97 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCCH
Confidence 46789999999999999998874 57999999 889998875 5679999999887 444 49999999999999876
Q ss_pred HHHHHHHHHH-HhcCCCCceEEEEeeeeCCCCCCCcc----hhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCcee
Q 018565 264 ECIKILKNCK-EAITKDKGKVIIVEAIIEEDDGVDNK----FKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRY 338 (354)
Q Consensus 264 ~~~~~L~~~~-~~L~p~gG~lli~e~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 338 (354)
..+|++++ ++|+| ||.+++.-+....... ... .........-..... ...+.++.+++.++++++||+++
T Consensus 98 --~~~l~~i~~~~Lk~-gG~l~i~~pn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~l~~~l~~~Gf~i~ 172 (225)
T d2p7ia1 98 --VALLKRINDDWLAE-GGRLFLVCPNANAVSR-QIAVKMGIISHNSAVTEAEFAH-GHRCTYALDTLERDASRAGLQVT 172 (225)
T ss_dssp --HHHHHHHHHTTEEE-EEEEEEEEECTTCHHH-HHHHHTTSSSSTTCCCHHHHHT-TCCCCCCHHHHHHHHHHTTCEEE
T ss_pred --HHHHHHHHHHhcCC-CceEEEEeCCcccHHH-HHHHHhhhhhhhhhcCccccce-eeeeccCHHHHHHHHHHCCCEEE
Confidence 47899998 78999 9999986432111000 000 000000000000111 23456789999999999999988
Q ss_pred EEE
Q 018565 339 NIT 341 (354)
Q Consensus 339 ~~~ 341 (354)
+..
T Consensus 173 ~~~ 175 (225)
T d2p7ia1 173 YRS 175 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.67 E-value=7e-17 Score=114.98 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=74.0
Q ss_pred HHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 22 WKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 22 ~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
+..+.+++.+.+|++++++||||.|.. +|+|++|||+++|+++..+.|+||+|++.|++++.+ ++.|++|+.|+
T Consensus 6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~~~~~l~rlLr~l~a~gl~~e~~----~~~y~lt~~s~ 79 (85)
T d1tw3a1 6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA----PGEFVPTEVGE 79 (85)
T ss_dssp HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE----TTEEEECTTGG
T ss_pred HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCcChhHHHHHHHHHHHCCCeEecC----CCeEecCHHHH
Confidence 455688899999999999999999986 899999999999999999999999999999999887 48999999999
Q ss_pred hhhcCC
Q 018565 102 RLMRHG 107 (354)
Q Consensus 102 ~l~~~~ 107 (354)
.|.+|+
T Consensus 80 ~L~~Dh 85 (85)
T d1tw3a1 80 LLADDH 85 (85)
T ss_dssp GGSTTS
T ss_pred HhhcCC
Confidence 998764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=6.2e-16 Score=129.23 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=86.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-CCC-cceEEEecccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-GVP-EADAAIIKWVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D~i~~~~~lh~ 259 (354)
.+++|||||||+|..+..++++ +.+++++|+ +.+++.++. .+++++...|+.+ +++ .||+|++..++|+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence 4569999999999999999997 568999999 888887654 4679999999988 443 4999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
+++++..++|++++++|+| ||.+++.....
T Consensus 108 ~~~~~~~~~l~~~~~~L~p-gG~~~~~~~~~ 137 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKP-GGYNLIVAAMD 137 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEE-EEEEEEEEEBC
T ss_pred CCHHHHHHHHHHHHHHcCC-CcEEEEEEecC
Confidence 9998899999999999999 99999877653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=4.3e-16 Score=132.54 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=86.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC--cceEEEeccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP--EADAAIIKWVLH 258 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh 258 (354)
++..+|||||||+|.++..+++. +.+++++|+ +++++.+++ ...+.++.+|+.+ +++ +||+|++..++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 35689999999999999999985 668999999 899988875 5678899999988 654 499999999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
++++.+..++|+++.++||| ||++++....
T Consensus 114 ~~~~~d~~~~l~~i~~~Lkp-gG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKP-SGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEE-EEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCc-CcEEEEEEcC
Confidence 99988888999999999999 9999887654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.63 E-value=1.7e-15 Score=128.91 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=110.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCC--CC--cceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDG--VP--EADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~--~~--~~D~i~~~~~l 257 (354)
+.++.+|||+|||+|.++..+++..|+.+++++|+ |.+++.++. .+++.++.+|...+ .. .+|++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 77899999999999999999999999999999999 888887664 57788888888773 22 37887887888
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
|++++ ...+++++++.||| ||.++++......+.. .+ .....+++.+.|+++||++
T Consensus 152 ~~~~~--~~~~l~~~~r~LKp-gG~~~i~~k~~~~d~~-~~--------------------~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 152 AQPNQ--AEILIKNAKWFLKK-GGYGMIAIKARSIDVT-KD--------------------PKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp CSTTH--HHHHHHHHHHHEEE-EEEEEEEEEGGGTCSS-SC--------------------HHHHHHHHHHHHHHHTEEE
T ss_pred cchHH--HHHHHHHHHHhccc-CceEEEEeeccccCCC-CC--------------------HHHHHHHHHHHHHHcCCEE
Confidence 87554 46789999999999 9999998766554433 21 1112467889999999999
Q ss_pred eEEEEcCC---ceeEEEE
Q 018565 338 YNITSIHA---VQSLIEA 352 (354)
Q Consensus 338 ~~~~~~~~---~~~~i~~ 352 (354)
++...+.. .+.++.+
T Consensus 208 ve~idL~py~~~H~~vvg 225 (230)
T d1g8sa_ 208 VDEVDIEPFEKDHVMFVG 225 (230)
T ss_dssp EEEEECTTTSTTEEEEEE
T ss_pred EEEecCCCCcCCeEEEEE
Confidence 99988743 3655554
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.62 E-value=3.5e-16 Score=112.62 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEe
Q 018565 16 DAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQ 95 (354)
Q Consensus 16 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~ 95 (354)
+....+++++.+++.+.+|++|+|+|||+.|.+ +|.|++|||+++|++++.+.|+||+|+++|+|++.++ +.+.|+
T Consensus 6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~~~~~l~rLlr~L~a~gll~~~~d--~~~~~~ 81 (92)
T d1qzza1 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEK--QGRPLR 81 (92)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC---CCCCE
T ss_pred hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCcCchHHHHHHHHHHHCCCeeeecC--CCceec
Confidence 456778999999999999999999999999986 8999999999999999999999999999999998863 135688
Q ss_pred cCcccchhhc
Q 018565 96 QTPLSRRLMR 105 (354)
Q Consensus 96 ~t~~~~~l~~ 105 (354)
+|+.|+.|.+
T Consensus 82 ~t~~g~lL~d 91 (92)
T d1qzza1 82 PTRLGMLLAD 91 (92)
T ss_dssp ECTTGGGGST
T ss_pred ccHHHHhccC
Confidence 9999988875
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.61 E-value=2.5e-15 Score=124.99 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=88.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------------------CCCeEEeecCCCCCCC-
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------------------CHGVEHVGGDMFDGVP- 246 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~~~~- 246 (354)
.+++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ...+++..+|+++..+
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 668899999999999999999997 789999999 899988764 3456788888888322
Q ss_pred ---cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 247 ---EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 247 ---~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
.+|+|++..++|+++++.....++++.++||| ||++++.......
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp-gG~l~l~~~~~~~ 143 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ-ACSGLLITLEYDQ 143 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS-EEEEEEEEESSCS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC-CcEEEEEEccccc
Confidence 48999999999999998889999999999999 9999887655443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.61 E-value=1.1e-15 Score=132.11 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=79.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCC-cceEEEec-ccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVP-EADAAIIK-WVLHD 259 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~-~~D~i~~~-~~lh~ 259 (354)
++.+|||||||+|.++..++++. .+++++|+ ++|++.|++ ..++++..+|+.+ +.+ +||+|++. +++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 45799999999999999999984 58999999 999988865 5689999999988 544 49998874 67766
Q ss_pred C-ChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 260 W-GDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 260 ~-~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+ +.++..++|++++++|+| ||.+++
T Consensus 115 ~~~~~~~~~~l~~~~~~Lkp-gG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKE-GGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE-EEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCC-CeEEEE
Confidence 6 466788999999999999 998775
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=3.4e-15 Score=129.20 Aligned_cols=105 Identities=17% Similarity=0.282 Sum_probs=87.8
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-CCCc-c
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-GVPE-A 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~~~~-~ 248 (354)
..++.... ..+..+|||||||+|..+..++++ +.+++++|+ +++++.|++ ..++++..+|+.+ ++++ |
T Consensus 31 ~~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 31 EEIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp HHHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHhc--CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence 34444455 566789999999999999999987 458999999 899998875 4589999999988 6654 9
Q ss_pred eEEEec-cccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 249 DAAIIK-WVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 249 D~i~~~-~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
|+|++. +++++++.++..++|++++++||| ||.+++.
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp-gG~lii~ 144 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKP-GGVFITD 144 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 999885 688888878889999999999999 9988774
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1e-14 Score=124.45 Aligned_cols=131 Identities=5% Similarity=-0.112 Sum_probs=103.6
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------------------CCCeEEeecCCC
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------------------CHGVEHVGGDMF 242 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~d~~ 242 (354)
..++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++..+|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 457789999999999999999986 779999999 888876532 468999999998
Q ss_pred C-C-C--CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCc
Q 018565 243 D-G-V--PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKG 318 (354)
Q Consensus 243 ~-~-~--~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 318 (354)
+ + . ..||+|+...++|+++++....+++++.++||| ||++++.....+.... . +..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp-gG~~~l~~~~~~~~~~-~------------------gpp 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK-KFQYLLCVLSYDPTKH-P------------------GPP 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE-EEEEEEEEEECCTTTC-C------------------CSS
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC-cceEEEEEcccCCCCC-C------------------CCC
Confidence 7 2 2 249999999999999999999999999999999 9998887766543322 1 011
Q ss_pred ccCCHHHHHHHHHHcCCceeEE
Q 018565 319 KERSLKEWDYVLRQAGFSRYNI 340 (354)
Q Consensus 319 ~~~t~~e~~~ll~~aGf~~~~~ 340 (354)
...+.+++.++++. +|.+..+
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEE
Confidence 23478999999965 6766444
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.54 E-value=2.8e-14 Score=123.59 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=81.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CC--C-cceEEEecc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GV--P-EADAAIIKW 255 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~--~-~~D~i~~~~ 255 (354)
+++.+|||||||+|..+..+++... .+++++|+ +.+++.|++ ..++.+..+|+.. +. . .||+|++..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 4678999999999999999988743 47999999 899888864 3579999999976 33 2 499999999
Q ss_pred ccccC--ChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDW--GDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~--~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
++|++ +.+...++|++++++||| ||.+++..
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~-gG~~i~~~ 134 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRP-GGYFIMTV 134 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCC-CCEEEEEe
Confidence 99986 446778999999999999 99988753
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=4.7e-14 Score=124.05 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=98.0
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHH----HCCCC--eEEEeec-hHHhhhccc-------CCCeEE--eecC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTK----AFPRI--RGINFDL-PHVVCVAEK-------CHGVEH--VGGD 240 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~-------~~~v~~--~~~d 240 (354)
+.++..+.. .++..+|||||||+|.++..+++ .+++. +++++|. +.+++.+++ ...+.+ ...+
T Consensus 29 ~~~l~~l~~-~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 107 (280)
T d1jqea_ 29 PGIIGRIGD-TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKET 107 (280)
T ss_dssp HHHTTTTTT-TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSC
T ss_pred HHHHHHhcc-CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhh
Confidence 444444431 34556899999999998777655 45554 5789998 888887764 233433 3333
Q ss_pred CC-------CC--CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHH-
Q 018565 241 MF-------DG--VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMV- 310 (354)
Q Consensus 241 ~~-------~~--~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~- 310 (354)
+. .+ ...||+|++.+++|++++. .++|++++++|+| ||.++|..... ... +. ..+..+.
T Consensus 108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lkp-gG~l~i~~~~~--~~~----~~--~l~~~~~~ 176 (280)
T d1jqea_ 108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT-NAKMLIIVVSG--SSG----WD--KLWKKYGS 176 (280)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE-EEEEEEEEECT--TSH----HH--HHHHHHGG
T ss_pred hhhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCC-CCEEEEEEecC--cch----HH--HHHHHHHH
Confidence 32 11 2349999999999998765 4899999999999 99998875421 111 11 1111111
Q ss_pred hhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 311 MMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 311 ~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
..........++.++|.++|.+.||+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 177 RFPQDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp GSCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred hcCCCcccccCCHHHHHHHHHHCCCceEE
Confidence 11111234567899999999999998654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=2.8e-14 Score=122.69 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=79.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCC--cceEEEe-ccccccCCh
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVP--EADAAII-KWVLHDWGD 262 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~--~~D~i~~-~~~lh~~~~ 262 (354)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++.....++.+|+.+ +++ .||+|++ ..++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 46679999999999999999876 678999999 9999998873333467788877 665 4999987 578999887
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.. ++|++++++||| ||.+++..+
T Consensus 119 ~~--~~l~~i~r~Lk~-gG~~ii~~~ 141 (246)
T d2avna1 119 KD--KAFSEIRRVLVP-DGLLIATVD 141 (246)
T ss_dssp HH--HHHHHHHHHEEE-EEEEEEEEE
T ss_pred HH--HHHHHHHhhcCc-CcEEEEEEC
Confidence 64 789999999999 998888653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.4e-14 Score=125.64 Aligned_cols=140 Identities=14% Similarity=-0.073 Sum_probs=95.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCC--e--------------------------
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHG--V-------------------------- 234 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~--v-------------------------- 234 (354)
..++.+|||||||+|.++..++... ..+++++|+ +.+++.+++ ... +
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3467899999999998887666543 237999999 888887764 111 0
Q ss_pred -----EEeecCC----CC-CCC--cceEEEeccccccCCh--HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcch
Q 018565 235 -----EHVGGDM----FD-GVP--EADAAIIKWVLHDWGD--DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKF 300 (354)
Q Consensus 235 -----~~~~~d~----~~-~~~--~~D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~ 300 (354)
.....+. .. +.+ .||+|++..++|+++. ++...+++++++.||| ||.+++.+........ .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp-GG~li~~~~~~~~~~~-~--- 202 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP-GGHLVTTVTLRLPSYM-V--- 202 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEESSCCEEE-E---
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC-CcEEEEEEecccccce-e---
Confidence 0111111 11 222 4999999999998753 4677899999999999 9999998764322111 0
Q ss_pred hhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEEEc
Q 018565 301 KSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNITSI 343 (354)
Q Consensus 301 ~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~ 343 (354)
. +. . .....++.+++.++|++|||+++++...
T Consensus 203 --~----~~----~-~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 203 --G----KR----E-FSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp --T----TE----E-EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --c----cc----c-ccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 00 0 1123568999999999999999887544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=2.1e-13 Score=117.37 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=97.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC--CCcceEEEecccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG--VPEADAAIIKWVLHD 259 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~--~~~~D~i~~~~~lh~ 259 (354)
.++.+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .-++++..+|+.+. ..+||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~- 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc-
Confidence 46789999999999999888775 468999999 999988875 45678888888763 34699999864433
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeE
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYN 339 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 339 (354)
...++++.++++||| ||++++++.... ..+++.+.++++||+.++
T Consensus 196 ----~l~~l~~~~~~~Lkp-GG~lilSgil~~------------------------------~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 196 ----LHAALAPRYREALVP-GGRALLTGILKD------------------------------RAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ----HHHHHHHHHHHHEEE-EEEEEEEEEEGG------------------------------GHHHHHHHHHHTTCEEEE
T ss_pred ----cHHHHHHHHHHhcCC-CcEEEEEecchh------------------------------hHHHHHHHHHHCCCEEEE
Confidence 456789999999999 999998654210 146778889999999998
Q ss_pred EEEcCCceeEEEEe
Q 018565 340 ITSIHAVQSLIEAF 353 (354)
Q Consensus 340 ~~~~~~~~~~i~~~ 353 (354)
...... +..+..+
T Consensus 241 ~~~~~~-Wv~l~~~ 253 (254)
T d2nxca1 241 EAAEGE-WVLLAYG 253 (254)
T ss_dssp EEEETT-EEEEEEE
T ss_pred EEEECC-EEEEEEe
Confidence 877654 3344444
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=3.2e-13 Score=113.04 Aligned_cols=143 Identities=14% Similarity=0.080 Sum_probs=100.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCC-CC--cceEE-Eecccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDG-VP--EADAA-IIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~-~~--~~D~i-~~~~~l 257 (354)
+.++.+|||+|||+|..+..+++..|+.+++++|+ +.+++.+++ ..++.++.+|...+ .+ .+|.+ ++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 78899999999999999999999999889999999 889887764 67899999998873 22 23322 333344
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
+++. +...+++++++.||| ||++++.......+.. .++ .. ...+..+.+ ++||++
T Consensus 134 ~~~~--~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~d~~-~~~---~~-----------------~~~~~~~~l-~~gf~i 188 (209)
T d1nt2a_ 134 AQKN--QIEILKANAEFFLKE-KGEVVIMVKARSIDST-AEP---EE-----------------VFKSVLKEM-EGDFKI 188 (209)
T ss_dssp CSTT--HHHHHHHHHHHHEEE-EEEEEEEEEHHHHCTT-SCH---HH-----------------HHHHHHHHH-HTTSEE
T ss_pred cChh--hHHHHHHHHHHHhcc-CCeEEEEEEccccCCC-CCH---HH-----------------HHHHHHHHH-HcCCEE
Confidence 4433 345889999999999 9999998754433222 100 00 011222333 479999
Q ss_pred eEEEEcCC---ceeEEEEeC
Q 018565 338 YNITSIHA---VQSLIEAFP 354 (354)
Q Consensus 338 ~~~~~~~~---~~~~i~~~~ 354 (354)
.+...+.. .+.+|-+++
T Consensus 189 ~E~i~L~P~~~~H~~v~~~r 208 (209)
T d1nt2a_ 189 VKHGSLMPYHRDHIFIHAYR 208 (209)
T ss_dssp EEEEECTTTCTTEEEEEEEE
T ss_pred EEEEccCCCccCcEEEEEEe
Confidence 99887743 466776653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.4e-13 Score=120.03 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC-CCC--cceEEEeccccccCCh
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD-GVP--EADAAIIKWVLHDWGD 262 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh~~~~ 262 (354)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++..+|+.+ +++ .||+|++..++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 3568999999999999999999999999999999 889988876 7889999999988 655 3999999888776
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 263 DECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 263 ~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+++++++||| ||.+++..+
T Consensus 160 ------~~e~~rvLkp-gG~l~~~~p 178 (268)
T d1p91a_ 160 ------AEELARVVKP-GGWVITATP 178 (268)
T ss_dssp ------HHHHHHHEEE-EEEEEEEEE
T ss_pred ------HHHHHHHhCC-CcEEEEEee
Confidence 4678899999 999999875
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.44 E-value=1e-13 Score=101.38 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=77.3
Q ss_pred ccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCC--CCCCHHHHHhHcCCC----cccHHHHHHHHhccCceeecc
Q 018565 13 EEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKG--SPITLNELASALKCD----PSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~--~~~t~~elA~~~g~~----~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..+.....++++++++...+|++|++|||||.|.+.| .++|..|||.+++.+ +..+.|+||+|++.|+|....
T Consensus 3 ~dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~ 82 (107)
T d1kyza1 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSV 82 (107)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEee
Confidence 44456667789999999999999999999999998754 367999999999884 347999999999999997643
Q ss_pred CC--CC--CceEecCcccchhhcC
Q 018565 87 TS--QG--SMAFQQTPLSRRLMRH 106 (354)
Q Consensus 87 ~~--~~--~~~y~~t~~~~~l~~~ 106 (354)
.. || +..|.+||.|++|+++
T Consensus 83 ~~~~dg~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 83 RTQQDGKVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp EECTTSCEEEEEEECHHHHHHSCC
T ss_pred ecCCCCCeeeEEecchhHHhhcCC
Confidence 21 22 2469999999999876
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1e-13 Score=120.64 Aligned_cols=138 Identities=14% Similarity=0.007 Sum_probs=95.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCC---------------------------
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHG--------------------------- 233 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~--------------------------- 233 (354)
...+.++||||||+|.+....+.... .+++++|. +.+++.+++ ...
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 34678999999999987654444433 37999999 888887753 100
Q ss_pred ----eEEeecCCCCC-------C--CcceEEEeccccccCCh--HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCc
Q 018565 234 ----VEHVGGDMFDG-------V--PEADAAIIKWVLHDWGD--DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDN 298 (354)
Q Consensus 234 ----v~~~~~d~~~~-------~--~~~D~i~~~~~lh~~~~--~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~ 298 (354)
......|+.++ . ..||+|++.+++|+.+. ++..+++++++++||| ||.|++.+........
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP-GG~li~~~~~~~~~~~--- 206 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP-GGHLLLIGALEESWYL--- 206 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE-EEEEEEEEEESCCEEE---
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC-CCEEEEecccCCcccc---
Confidence 12234455542 1 14899999999998753 3578999999999999 9999988765322111
Q ss_pred chhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCceeEEE
Q 018565 299 KFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSRYNIT 341 (354)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 341 (354)
..... ......+.+++.++|+++||+++++.
T Consensus 207 --------~~~~~----~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 207 --------AGEAR----LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp --------ETTEE----EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred --------cCCcc----cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 00000 11124689999999999999988754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=4.5e-13 Score=111.07 Aligned_cols=103 Identities=17% Similarity=0.308 Sum_probs=83.4
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCCCCC--
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDGVP-- 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~~~-- 246 (354)
.+++.+. ..+..+|||+|||+|.++..+++.++ +++++|+ +.+++.+++ ..++++..+|++++.+
T Consensus 43 lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 3455565 66789999999999999999998866 6788888 888887764 3579999999988544
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.||+|++..++|. ..+...++++++.+.|+| ||.++++
T Consensus 119 ~fD~Ii~~~p~~~-~~~~~~~~l~~~~~~Lkp-gG~l~i~ 156 (194)
T d1dusa_ 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKD-NGEIWVV 156 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE-EEEEEEE
T ss_pred CceEEEEcccEEe-cchhhhhHHHHHHHhcCc-CcEEEEE
Confidence 4999999888775 445567899999999999 9998774
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.42 E-value=2.2e-13 Score=99.85 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=76.9
Q ss_pred cchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCC---CCHHHHHhHcCC---Ccc---cHHHHHHHHhccCceee
Q 018565 14 EDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSP---ITLNELASALKC---DPS---LLQRIMRFLIHLKFFKE 84 (354)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~---~t~~elA~~~g~---~~~---~l~~lL~~L~~~g~l~~ 84 (354)
..+.....++++.++....+|++|+||||+|.|.+.|+| +|+.|||.+++. +|. .+.|+||+|++.|+|..
T Consensus 3 ~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~ 82 (110)
T d1fp1d1 3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 82 (110)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcccc
Confidence 345567789999999999999999999999999876434 799999999986 333 59999999999999975
Q ss_pred ccCC--CC--CceEecCcccchhhcCC
Q 018565 85 VPTS--QG--SMAFQQTPLSRRLMRHG 107 (354)
Q Consensus 85 ~~~~--~~--~~~y~~t~~~~~l~~~~ 107 (354)
.... +| +..|.+||.+++|+++.
T Consensus 83 ~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 83 TTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccCCCCCeeeEEecchhhHhhcCCC
Confidence 5321 11 33699999999999864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-13 Score=117.86 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=73.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC---CCC--cceEEE----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD---GVP--EADAAI---- 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~---~~~--~~D~i~---- 252 (354)
..+.+|||||||+|..+..+++..+ .+++++|+ +.+++.+++ ..++.+..+|... +.+ +||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 3568999999999999999988654 47999999 899988865 4567777776543 333 477776
Q ss_pred -eccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 -IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 -~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
....++++++ ...++++++++||| ||.+++.+
T Consensus 131 ~~~~~~~~~~~--~~~~~~~~~r~Lkp-GG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTHQ--FNFIKNHAFRLLKP-GGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEE-EEEEEECC
T ss_pred ccccccccccC--HHHHHHHHHHHcCC-CcEEEEEe
Confidence 4566666554 45899999999999 99887643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.3e-12 Score=116.97 Aligned_cols=111 Identities=13% Similarity=0.131 Sum_probs=89.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------CCCeEEeecC
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------CHGVEHVGGD 240 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~d 240 (354)
..+++.+. +.+..+|||||||+|..+..+++.++..+++|+|+ +.+++.++. ..+++++.+|
T Consensus 141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 45566666 77889999999999999999999999889999999 877776642 4679999999
Q ss_pred CCC-CCC----cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCC
Q 018565 241 MFD-GVP----EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293 (354)
Q Consensus 241 ~~~-~~~----~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~ 293 (354)
+.+ ++. .+|+|++.+..| .++..+.|+++.+.||| ||++++.+...+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f---~~~~~~~l~e~~r~LKp-Gg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKERFANMKE-GGRIVSSKPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT---CHHHHHHHHHHHTTCCT-TCEEEESSCSSCTT
T ss_pred ccccccccccCcceEEEEcceec---chHHHHHHHHHHHhCCC-CcEEEEecccCCCC
Confidence 998 543 368888776655 24556889999999999 99999887665543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=3e-12 Score=110.18 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=86.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc---------CCCeEEeecCCCC-
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK---------CHGVEHVGGDMFD- 243 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~- 243 (354)
+..++..++ ..++.+|||+|||+|.++..|++. .|+-+++.+|. +++++.|++ .+++++..+|+.+
T Consensus 85 ~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 85 AAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 455666677 889999999999999999999987 79999999999 888888864 4789999999987
Q ss_pred CCC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 244 GVP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 244 ~~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+++ .||.|++ +.+++. +++.+++++||| ||++++..+.
T Consensus 163 ~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp-GG~lv~~~P~ 202 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA-GGVLMVYVAT 202 (264)
T ss_dssp CCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE-EEEEEEEESS
T ss_pred cccCCCcceEEE-----ecCCHH--HHHHHHHhccCC-CCEEEEEeCc
Confidence 555 4999986 356554 779999999999 9999886543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.30 E-value=2.5e-12 Score=105.71 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=77.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC---CCCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD---GVPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~~~~D~i~~~~ 255 (354)
..++.+|||||||+|.++..+++.. .+++++|. +++++.+++ .++++++.+|+.+ +.+.||+|++..
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 6788999999999999999998864 48999999 899988875 4799999999877 234699999987
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..++ ..++++.+.+.||| ||++++..
T Consensus 109 ~~~~-----~~~~~~~~~~~Lkp-gG~lvi~~ 134 (186)
T d1l3ia_ 109 SGGE-----LQEILRIIKDKLKP-GGRIIVTA 134 (186)
T ss_dssp CTTC-----HHHHHHHHHHTEEE-EEEEEEEE
T ss_pred cccc-----chHHHHHHHHHhCc-CCEEEEEe
Confidence 6654 34789999999999 99988754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.2e-11 Score=102.71 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=100.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCC--C----CcceEEEec
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDG--V----PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~--~----~~~D~i~~~ 254 (354)
+.++.+|||+|||+|.++..+++. .|.-+++++|+ +.+++.++. ..++..+..|...+ . +.+|+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 678999999999999999999997 48889999999 888887654 56677777777652 1 23566654
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAG 334 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aG 334 (354)
.+++. ++...+++++++.||| ||.++++......+.. .+ ......+..+++ +.|
T Consensus 150 -d~~~~--~~~~~~l~~~~~~Lkp-gG~lvi~~ka~~~~~~-~~--------------------~~~v~~~v~~l~-~~g 203 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLKR-GGYGMIAVKSRSIDVT-KE--------------------PEQVFREVEREL-SEY 203 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEEE-EEEEEEEEEGGGTCTT-SC--------------------HHHHHHHHHHHH-HTT
T ss_pred -Ecccc--chHHHHHHHHHHhccc-CCeEEEEEECCccCCC-CC--------------------HHHHHHHHHHHH-HcC
Confidence 33332 3456789999999999 9999987654333222 10 000122334444 569
Q ss_pred CceeEEEEcCC---ceeEEEEeC
Q 018565 335 FSRYNITSIHA---VQSLIEAFP 354 (354)
Q Consensus 335 f~~~~~~~~~~---~~~~i~~~~ 354 (354)
|++.+...+.. .+.++.++|
T Consensus 204 f~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCCceEEEEEEe
Confidence 99999888743 488888886
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=8.8e-12 Score=103.52 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=77.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC--cceEEEecccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP--EADAAIIKWVL 257 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~--~~D~i~~~~~l 257 (354)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.. ..++.++.+|+.. . ++ .+|.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 35799999999999999999999999999999 777766543 5789999999876 2 44 48988887776
Q ss_pred ccCChHH------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDE------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+.... ...+|+.++++||| ||.|+|..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkp-gG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGK-GGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTT-SCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCC-CcEEEEEE
Confidence 5432221 14799999999999 99998864
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=4.7e-11 Score=103.22 Aligned_cols=134 Identities=14% Similarity=0.224 Sum_probs=101.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCCC--cceEEEeccccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGVP--EADAAIIKWVLH 258 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~--~~D~i~~~~~lh 258 (354)
....+|||+|||+|..+..++..+|+.+++++|+ +.+++.|++ ..++++..+|++++.+ .||+|+++-..-
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 3567899999999999999999999999999999 888888775 4589999999999654 499999863321
Q ss_pred c------------CCh-----------HHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhccc
Q 018565 259 D------------WGD-----------DECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHT 315 (354)
Q Consensus 259 ~------------~~~-----------~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (354)
. +.+ ....++++.+.+.|+| ||.+++ |. ..
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~-~G~l~l-Ei-----g~-------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS-GGFLLL-EH-----GW-------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE-EEEEEE-EC-----CS--------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC-CCEEEE-EE-----Cc--------------------
Confidence 1 100 2346788999999999 887776 31 00
Q ss_pred CCcccCCHHHHHHHHHHcCCceeEEEE-cCCceeEEEEe
Q 018565 316 NKGKERSLKEWDYVLRQAGFSRYNITS-IHAVQSLIEAF 353 (354)
Q Consensus 316 ~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~ 353 (354)
...+...+++++.||+.++++. +.+...+|.++
T Consensus 240 -----~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 240 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -----hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 0145778889999998777655 45566677664
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.28 E-value=6.1e-12 Score=107.50 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=79.4
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC-
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP- 246 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~- 246 (354)
..++..++ ..++.+|||+|||+|.++..+++. .|+.+++++|. +++++.|++ ..++++..+|+.+..+
T Consensus 75 ~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~ 152 (250)
T d1yb2a1 75 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 152 (250)
T ss_dssp ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc
Confidence 34455566 789999999999999999999986 68889999999 888887764 4789999999988544
Q ss_pred -cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 247 -EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 247 -~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.||.|++ +.+++. .+++++.++||| ||++++..
T Consensus 153 ~~fD~V~l-----d~p~p~--~~l~~~~~~LKp-GG~lv~~~ 186 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDPW--NHVQKIASMMKP-GSVATFYL 186 (250)
T ss_dssp CCEEEEEE-----CCSCGG--GSHHHHHHTEEE-EEEEEEEE
T ss_pred ceeeeeee-----cCCchH--HHHHHHHHhcCC-CceEEEEe
Confidence 4999986 334443 679999999999 99998753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=2.8e-12 Score=113.17 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=74.7
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC-----CC-Ccce
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD-----GV-PEAD 249 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~-----~~-~~~D 249 (354)
..+..+|||||||+|..+..|+++ +.+++++|+ +++++.|++ ..+..+...|+.. +. ..||
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 345679999999999999999987 578999999 999988764 1234455566654 12 2499
Q ss_pred EEEec-cccccCCh-----HHHHHHHHHHHHhcCCCCceEEEE
Q 018565 250 AAIIK-WVLHDWGD-----DECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 250 ~i~~~-~~lh~~~~-----~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+|++. ++++|+++ ++..++|++++++||| ||.+++.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP-GGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE-EEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc-CcEEEEe
Confidence 88764 67887754 4578899999999999 9987763
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=6.2e-12 Score=105.48 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=80.4
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---C
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---P 246 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~ 246 (354)
.+++.+. ..++.+|||||||+|..+..+++.. +..+++++|. +++++.+++ ..++.++.+|..+.. .
T Consensus 66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 4455566 7889999999999999999999864 6789999998 888888775 578999999988732 2
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+||+|++...+++.++ ++.+.||| ||+|++.
T Consensus 144 ~fD~I~~~~~~~~~p~--------~l~~~Lkp-GG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPE--------TWFTQLKE-GGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCH--------HHHHHEEE-EEEEEEE
T ss_pred chhhhhhhccHHHhHH--------HHHHhcCC-CcEEEEE
Confidence 4999999999998775 24567999 9999874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=7e-12 Score=108.45 Aligned_cols=127 Identities=19% Similarity=0.215 Sum_probs=98.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF-PRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGVP 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~~ 246 (354)
+..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|++ .+++.+..+|+...++
T Consensus 92 ~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~ 169 (266)
T d1o54a_ 92 SSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD 169 (266)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc
Confidence 345666777 8899999999999999999999874 8899999999 899888875 4788899999876443
Q ss_pred --cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHH
Q 018565 247 --EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLK 324 (354)
Q Consensus 247 --~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~ 324 (354)
.+|.|++ +.+++. ++|+++.++||| ||++++..+... ..+
T Consensus 170 ~~~~D~V~~-----d~p~p~--~~l~~~~~~LKp-GG~lv~~~P~~~------------------------------Qv~ 211 (266)
T d1o54a_ 170 EKDVDALFL-----DVPDPW--NYIDKCWEALKG-GGRFATVCPTTN------------------------------QVQ 211 (266)
T ss_dssp CCSEEEEEE-----CCSCGG--GTHHHHHHHEEE-EEEEEEEESSHH------------------------------HHH
T ss_pred ccceeeeEe-----cCCCHH--HHHHHHHhhcCC-CCEEEEEeCccc------------------------------HHH
Confidence 4787754 556554 789999999999 999988543210 134
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018565 325 EWDYVLRQAGFSRYNITS 342 (354)
Q Consensus 325 e~~~ll~~aGf~~~~~~~ 342 (354)
+..+.+++.||..+++..
T Consensus 212 ~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 212 ETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHCCceeEEEEE
Confidence 556677888998777654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=1.7e-11 Score=111.62 Aligned_cols=111 Identities=14% Similarity=0.242 Sum_probs=85.8
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------CCCeEE-eec
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------CHGVEH-VGG 239 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~-~~~ 239 (354)
..+++.+. +.++.++||||||+|..+..+++.++..+++|+|+ +.+++.|+. ...+.+ ..+
T Consensus 206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 45666677 88899999999999999999999999889999999 888887763 223344 345
Q ss_pred CCCC-C-----CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCC
Q 018565 240 DMFD-G-----VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEED 293 (354)
Q Consensus 240 d~~~-~-----~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~ 293 (354)
++.. + ++.+|++++.+.+| +++..+.|+++.+.||| ||++++.+...+..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKP-GGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKV-GCKIISLKSLRSLT 339 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCT-TCEEEESSCSSCTT
T ss_pred chhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCC-CcEEEEecccCCCc
Confidence 5655 2 23578888877554 35567899999999999 99999888665544
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.19 E-value=9.5e-11 Score=97.16 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=75.4
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC--cceEEEecccc
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP--EADAAIIKWVL 257 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~--~~D~i~~~~~l 257 (354)
...|||||||+|.++..+++.+|+..++++|+ +.++..+.+ .+++.+..+|+.. . ++ .+|.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 45799999999999999999999999999999 777766543 5789999999866 2 33 37888765533
Q ss_pred ccCChHH-------HHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDE-------CIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e 287 (354)
.|+... ...+|+.+.+.||| ||.|.+..
T Consensus 112 -Pw~K~~h~krRl~~~~~l~~~~~~Lkp-gG~l~i~T 146 (204)
T d1yzha1 112 -PWPKKRHEKRRLTYKTFLDTFKRILPE-NGEIHFKT 146 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCT-TCEEEEEE
T ss_pred -cccchhhhhhhhhHHHHHHHHHHhCCC-CcEEEEEE
Confidence 344331 15789999999999 99998854
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=6.5e-11 Score=99.80 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=78.9
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCC
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDG 244 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~ 244 (354)
.+++.+....+++.+|||||||+|..+..+++. .|..+++++|. +++++.+++ ..++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 344444222678899999999999999888875 57889999999 888887753 46899999998873
Q ss_pred C---CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 245 V---PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 245 ~---~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
. .+||+|++...+++.++ .+.+.||| ||+|++.
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~Lkp-GG~LV~p 180 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKP-GGRLILP 180 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEEE-EEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcCC-CcEEEEE
Confidence 2 25999999999988764 35678999 9999884
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=2.8e-10 Score=101.15 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=73.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh 258 (354)
++.+|||||||+|.++..+++..+ .+++++|..+....+++ .++|+++.+|+.+ +.+ .+|+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 468999999999999998888644 47999998433333322 6789999999988 544 499999877776
Q ss_pred cCChH-HHHHHHHHHHHhcCCCCceEEE
Q 018565 259 DWGDD-ECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 259 ~~~~~-~~~~~L~~~~~~L~p~gG~lli 285 (354)
....+ ....++..+.+.||| ||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp-~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAP-DGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEE-EEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCC-CeEEEe
Confidence 65443 567899999999999 998763
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.5e-10 Score=102.44 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=82.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc-----------------CCCeEE
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK-----------------CHGVEH 236 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~v~~ 236 (354)
+..++..++ ..++.+|||+|||+|.++..|++. .|+-+++.+|+ +++++.|++ .+++++
T Consensus 87 ~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 87 INMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 345566667 889999999999999999999986 68899999999 888877653 468999
Q ss_pred eecCCCCC---CC--cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 237 VGGDMFDG---VP--EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 237 ~~~d~~~~---~~--~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
..+|+.+. .+ .||.|++ +++++. .++.++.++||| ||++++.-+.
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp-GG~lv~~~P~ 214 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH-GGVCAVYVVN 214 (324)
T ss_dssp EESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE-EEEEEEEESS
T ss_pred EecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC-CCEEEEEeCC
Confidence 99998762 22 4899886 344443 578999999999 9999986643
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.06 E-value=2.5e-10 Score=95.80 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=77.1
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCCCC---Ccce
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFDGV---PEAD 249 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~~~---~~~D 249 (354)
.++..++ +.++.+|||||||+|..+..+++.. .+++.+|. ++.++.+++ ..++.++.+|..... .+||
T Consensus 61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 3456666 7889999999999999998888874 57899998 888777764 689999999987733 3599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+|++...+++.++. +.+.||| ||+|++.
T Consensus 137 ~Iiv~~a~~~ip~~--------l~~qLk~-GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLCK--------PYEQLKE-GGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCHH--------HHHTEEE-EEEEEEE
T ss_pred HHHhhcchhhhhHH--------HHHhcCC-CCEEEEE
Confidence 99999888877642 4467999 9999884
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=5.8e-10 Score=99.61 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc-------CCCeEEeecCCCC-CCC--cceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK-------CHGVEHVGGDMFD-GVP--EADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~~--~~D~i~~~~~lh 258 (354)
++.+|||||||+|.++..++++.. .+++++|..+++..+++ ..+++++.+|+.+ +.| .+|+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 468999999999999988777643 48999999656555543 6789999999988 655 499999977776
Q ss_pred cCCh-HHHHHHHHHHHHhcCCCCceEE
Q 018565 259 DWGD-DECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 259 ~~~~-~~~~~~L~~~~~~L~p~gG~ll 284 (354)
.... .....++....++||| ||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~Lkp-gG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVE-GGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEE-EEEEE
T ss_pred eeccchhHHHHHHHHHhccCC-CeEEE
Confidence 6543 3456788888999999 88775
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.02 E-value=4.3e-10 Score=92.46 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=73.1
Q ss_pred CCCceEEEecCCccHHH----HHHHHH----CCCCeEEEeec-hHHhhhccc----------------------------
Q 018565 188 DGIETLVDIGGNDGTTL----RTLTKA----FPRIRGINFDL-PHVVCVAEK---------------------------- 230 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~----~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------------------------- 230 (354)
.+..+|+++|||+|.-. ..+.+. .+.+++++.|+ +.+++.|+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 35679999999999743 223332 13457899999 788876652
Q ss_pred ---------CCCeEEeecCCCCC----CCcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 231 ---------CHGVEHVGGDMFDG----VPEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 231 ---------~~~v~~~~~d~~~~----~~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
...+.+...+...+ .++||+|+|.|+|++++++...+++++++++|+| ||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p-GG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP-DGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE-EEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC-CcEEEE
Confidence 12355666666652 2359999999999999999999999999999999 998877
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.4e-09 Score=96.40 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=73.9
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc---c---CCCeEEeecCCCC-CCC--cceEEEeccc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE---K---CHGVEHVGGDMFD-GVP--EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~v~~~~~d~~~-~~~--~~D~i~~~~~ 256 (354)
..++.+|||||||+|.++..++++.+ .+++++|. +.+....+ . .+++.++.+|..+ +.+ .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34578999999999999999888754 48999999 44432221 1 6889999999988 544 5999999887
Q ss_pred cccCChH-HHHHHHHHHHHhcCCCCceEEE
Q 018565 257 LHDWGDD-ECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 257 lh~~~~~-~~~~~L~~~~~~L~p~gG~lli 285 (354)
.|....+ ....++....+.||| ||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp-~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK-GGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE-EEEEES
T ss_pred eeecccccccHHHHHHHHhcCCC-CcEEec
Confidence 7776554 455677777889999 998864
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=1.5e-09 Score=88.71 Aligned_cols=114 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCC-C----
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFD-G---- 244 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~-~---- 244 (354)
.+++++.+. ..+...+||++||+|.++..+++++|+.+++++|. +++++.+++ ..++.++.++|.+ +
T Consensus 12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 456666666 56788999999999999999999999999999999 999998875 6789999999876 2
Q ss_pred ---CCcceEEEecccccc--C-----ChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 245 ---VPEADAAIIKWVLHD--W-----GDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 245 ---~~~~D~i~~~~~lh~--~-----~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
..++|.|++-.-+.. + .-....+.|..+.++|+| ||++++++....+
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~-gG~l~ii~f~s~E 146 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP-GGRIVVISFHSLE 146 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE-EEEEEEEESSHHH
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC-CCeeeeeccccHH
Confidence 235888876432211 0 122356889999999999 9999998865433
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.90 E-value=1.8e-09 Score=89.79 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=76.6
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC---Cc
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV---PE 247 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~---~~ 247 (354)
.+++.++ ..++.+|||||||+|..+..+++.. +.+++++|. +++++.+++ ..++.++.+|..+.. .+
T Consensus 69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 3444455 7788999999999999999888764 356888888 888887765 589999999998843 35
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
||.|++...+...|+. +.+.|+| ||+|++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~-gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKI-GGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEE-EEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCC-CCEEEEE
Confidence 9999999998877753 4456899 9999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.87 E-value=3.9e-09 Score=88.43 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=72.8
Q ss_pred cCCCceEEEecCCccHHHHHHHHH------CCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCCCC---
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA------FPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFDGV--- 245 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~~--- 245 (354)
+.++.+|||||||+|..+..+++. .+..+++.+|. ++.++.+++ ..++.+..+|..+..
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence 678899999999999998888764 24568999998 777776653 358999999998832
Q ss_pred CcceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEE
Q 018565 246 PEADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.+||.|++...+...|+ .+.+.||| ||++++.
T Consensus 158 ~~fD~Iiv~~a~~~~p~--------~l~~~Lk~-gG~lV~p 189 (223)
T d1r18a_ 158 APYNAIHVGAAAPDTPT--------ELINQLAS-GGRLIVP 189 (223)
T ss_dssp CSEEEEEECSCBSSCCH--------HHHHTEEE-EEEEEEE
T ss_pred cceeeEEEEeechhchH--------HHHHhcCC-CcEEEEE
Confidence 35999999999987774 24568999 9999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.81 E-value=1.1e-08 Score=87.59 Aligned_cols=119 Identities=11% Similarity=0.085 Sum_probs=88.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-C-CCcceEEEecccc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-G-VPEADAAIIKWVL 257 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~-~~~~D~i~~~~~l 257 (354)
.++.+|||+|||+|.++..+++. +..+++++|+ |..++.+++ .+++++..+|..+ . ...||.|++...-
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~ 184 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 184 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence 46889999999999999999987 4568999999 888887764 5789999999988 3 2349998875322
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCCCCCCCcchhhhhhhccHHhhcccCCcccCCHHHHHHHHHHcCCce
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEEDDGVDNKFKSVRLMLDMVMMAHTNKGKERSLKEWDYVLRQAGFSR 337 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 337 (354)
....+|..+.+.|+| ||.|.+.+....+... ....+.+.++....||++
T Consensus 185 ------~~~~~l~~a~~~l~~-gG~lh~~~~~~~~~~~------------------------~~~~e~~~~~~~~~g~~v 233 (260)
T d2frna1 185 ------RTHEFIPKALSIAKD-GAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDV 233 (260)
T ss_dssp ------SGGGGHHHHHHHEEE-EEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEE
T ss_pred ------chHHHHHHHHhhcCC-CCEEEEEeccccccch------------------------hhHHHHHHHHHHHcCCce
Confidence 223678888899999 9988776654332111 123556678888899976
Q ss_pred e
Q 018565 338 Y 338 (354)
Q Consensus 338 ~ 338 (354)
.
T Consensus 234 ~ 234 (260)
T d2frna1 234 E 234 (260)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.8e-07 Score=79.52 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=58.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC----C-----CcceE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG----V-----PEADA 250 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~----~-----~~~D~ 250 (354)
....++||+|||+|..+..+++++|+++++++|+ +++++.|++ .+++.+...+..+. . ..||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4557999999999999999999999999999999 889888875 67888877544331 1 13999
Q ss_pred EEecccccc
Q 018565 251 AIIKWVLHD 259 (354)
Q Consensus 251 i~~~~~lh~ 259 (354)
|+++-..+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999877764
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.59 E-value=4.1e-08 Score=77.10 Aligned_cols=94 Identities=5% Similarity=0.002 Sum_probs=69.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC----CCCcceEEEeccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD----GVPEADAAIIKWV 256 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~----~~~~~D~i~~~~~ 256 (354)
.+.+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|..+ ....||+|++.-.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4689999999999999988887654 8999999 888776654 5779999999876 2345999988533
Q ss_pred cccCChHHHHHHHHHHH--HhcCCCCceEEEEee
Q 018565 257 LHDWGDDECIKILKNCK--EAITKDKGKVIIVEA 288 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~--~~L~p~gG~lli~e~ 288 (354)
. .......++..+. +.|+| +|.++ +|.
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~-~g~ii-iE~ 121 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSE-QVMVV-CET 121 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEE-EEEEE-EEE
T ss_pred h---ccchHHHHHHHHHHCCCcCC-CeEEE-EEe
Confidence 2 1344556666665 45898 77655 453
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.54 E-value=8.9e-08 Score=78.06 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=55.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCCCCCcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFDGVPEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~~~~~D~i~~~~~l 257 (354)
.+.+|||+|||+|.++..++...+ .+++++|+ +.+++.+++ ..+++++.+|+.+....||+|+++-.+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence 468999999999999888777644 47999999 888888876 678999999988744569999986443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.48 E-value=1.2e-07 Score=83.86 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=74.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-------CCcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-------VPEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-------~~~~D~i~ 252 (354)
.++.+|||++||+|.++..+++... .+++++|+ +..++.+++ .++++++.+|+++. -..||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4678999999999999999988743 48999999 888887765 46899999998762 12599999
Q ss_pred eccccccCChH-------HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 253 IKWVLHDWGDD-------ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 253 ~~~~lh~~~~~-------~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
+.-....-... .-.++++.+.++|+| ||.|+.+.
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p-GG~lv~~s 263 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD-GGILVTCS 263 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE-EEEEEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEEe
Confidence 84332211111 234588888999999 99888765
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2e-07 Score=77.45 Aligned_cols=96 Identities=14% Similarity=0.249 Sum_probs=75.2
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C-------CCcc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G-------VPEA 248 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~-------~~~~ 248 (354)
..+.++|||||||+|..+..+++..| +.+++.+|. ++..+.+++ .++++++.||..+ + ..+|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 34679999999999999999999876 688999998 777777764 6889999999765 1 2359
Q ss_pred eEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 249 DAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
|+|++.. +.......+..+.+.|+| ||.+++-+.
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~-GGvii~Dn~ 170 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRP-GGILAVLRV 170 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEE-EEEEEEECC
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 9999853 234456778899999999 776655443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.41 E-value=1.7e-07 Score=77.78 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=71.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC---------CCcce
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG---------VPEAD 249 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---------~~~~D 249 (354)
.++.+|||||||+|..+..+++..+ +.+++.+|. ++..+.++. .++|+++.||..+- ...||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 4568999999999999999999864 689999999 888877764 57899999998652 12489
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
+|++-. ..........+.+..+.|+| || ++|+|.+.
T Consensus 135 ~ifiD~---~~~~~~~~~~l~~~~~lLkp-GG-vIv~Ddvl 170 (214)
T d2cl5a1 135 MVFLDH---WKDRYLPDTLLLEKCGLLRK-GT-VLLADNVI 170 (214)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTTCEEE-EE-EEEESCCC
T ss_pred eeeecc---cccccccHHHHHHHhCccCC-Cc-EEEEeCcC
Confidence 998752 21122223346667788999 77 45555543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=7.3e-07 Score=73.09 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=55.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCCCCcceEEEeccccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDGVPEADAAIIKWVLH 258 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~~~~D~i~~~~~lh 258 (354)
.+.+|||+|||+|.++..++.+.+ .+++++|+ +.+++.+++ ..+.++..+|..+....||+|++.-..+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence 457999999999999998877543 58999999 888887764 5678899998877545699999866544
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.37 E-value=2.3e-07 Score=81.25 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-----------CCCeEEeecCCCC---CC-CcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-----------CHGVEHVGGDMFD---GV-PEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~---~~-~~~D~i 251 (354)
+.+.+||.||+|.|..+..+++..|..+++++|+ |++++.+++ .+|++++.+|..+ .. ..||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4578999999999999999998878889999999 899887663 5799999999887 22 359999
Q ss_pred Eeccc--cccC-ChH--HHHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWV--LHDW-GDD--ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~--lh~~-~~~--~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
++-.. ...- +.. ...++++.+++.|+| ||.+++.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p-~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP-GGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE-EEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCC-CceEEEe
Confidence 96432 1110 111 125789999999999 8877664
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=4e-07 Score=77.87 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=54.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCCC----CcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDGV----PEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~----~~~D~i~~~ 254 (354)
+..+++|+|||+|..+..+++ +|+.+++++|+ ++.+..+++ ..++.+..+|++++. ..||+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 456899999999999998874 69999999999 888888775 568899999998853 358999986
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.30 E-value=5.2e-07 Score=79.44 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=72.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCC-------CCcceEEEec
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDG-------VPEADAAIIK 254 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~-------~~~~D~i~~~ 254 (354)
.+.+|||++||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|.++. -..||+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4689999999999999998764 458999999 888888875 46799999998761 1259999985
Q ss_pred cccccCCh-------HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 255 WVLHDWGD-------DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 255 ~~lh~~~~-------~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
-.....+. ..-.++++.+.++|+| ||.|++..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp-GG~Lv~~s 261 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE-GGILATAS 261 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEe
Confidence 33221111 1234688899999999 99887643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.26 E-value=4.8e-07 Score=72.25 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=61.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-----CCCcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-----GVPEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-----~~~~~D~i~~ 253 (354)
...+.+|||+|||+|.++..++.+ +.+++.+|. +.+++.+++ ..++.....|.+. ....||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 346789999999999999988886 457889999 888887764 3455555555432 1235999998
Q ss_pred ccccccCChH-HHHHHHHHHHHhcCCCCceEEEEee
Q 018565 254 KWVLHDWGDD-ECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 254 ~~~lh~~~~~-~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.-..+ .+.. ....++. ...|+| ||.++ +|.
T Consensus 117 DPPY~-~~~~~~l~~l~~--~~ll~~-~g~iv-ie~ 147 (171)
T d1ws6a1 117 APPYA-MDLAALFGELLA--SGLVEA-GGLYV-LQH 147 (171)
T ss_dssp CCCTT-SCTTHHHHHHHH--HTCEEE-EEEEE-EEE
T ss_pred ccccc-cCHHHHHHHHHH--cCCcCC-CeEEE-EEe
Confidence 54332 2222 2222322 356898 77554 454
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.25 E-value=1.1e-06 Score=73.19 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=75.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC--C--------CCc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD--G--------VPE 247 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~--~--------~~~ 247 (354)
..++.+|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + .++
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 34679999999999999999999886 678999998 777777764 5789999999875 2 125
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
||+|++-. +.......+..+.+.|+| ||.+++-+.
T Consensus 137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~-gGiii~DNv 171 (227)
T d1susa1 137 YDFIFVDA-----DKDNYLNYHKRLIDLVKV-GGVIGYDNT 171 (227)
T ss_dssp BSEEEECS-----CSTTHHHHHHHHHHHBCT-TCCEEEETT
T ss_pred eeEEEecc-----chhhhHHHHHHHHhhcCC-CcEEEEccC
Confidence 99999843 234566889999999999 876665433
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.24 E-value=7.3e-07 Score=76.73 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=72.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------------CCCeEEeecCCCC---CCCc
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------------CHGVEHVGGDMFD---GVPE 247 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~d~~~---~~~~ 247 (354)
+++.+||.||+|.|..+..+++ +|..+++++|+ |.+++.+++ .+|++++.+|... .-..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 4678999999999999999886 56678999999 999887763 4789999999875 2345
Q ss_pred ceEEEeccccccCChHH---HHHHHHHHHHhcCCCCceEEEE
Q 018565 248 ADAAIIKWVLHDWGDDE---CIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~---~~~~L~~~~~~L~p~gG~lli~ 286 (354)
||+|++-..-. ..... -.++++.+++.|+| ||.+++.
T Consensus 150 yDvIi~D~~~~-~~~~~~L~t~eF~~~~~~~L~~-~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNN-PGIYVTQ 189 (276)
T ss_dssp EEEEEEECCCC-C-----TTSHHHHHHHHHHEEE-EEEEEEE
T ss_pred CCEEEEeCCCC-CCCcccccCHHHHHhhHhhcCC-CceEEEe
Confidence 99998743321 11111 25789999999999 8877654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=6.9e-07 Score=77.28 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=74.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CC-CcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GV-PEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~-~~~D~i~ 252 (354)
+.+.+||-||+|.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ .. ..||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4578999999999999999998777788999999 999888764 5899999999876 22 3499999
Q ss_pred eccccccC-ChH--HHHHHHHHHHHhcCCCCceEEEE
Q 018565 253 IKWVLHDW-GDD--ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 253 ~~~~lh~~-~~~--~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+-..-..- +.. --.++++.+++.|+| ||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~-~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKE-DGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCC-CcEEEEe
Confidence 75322110 111 125889999999999 8877654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.21 E-value=2.6e-06 Score=71.37 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=65.1
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc-c
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-A 248 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-~ 248 (354)
...+++..+ ..+..+|||||||+|.++..|++.. .+++++++ +..++.+++ .++++++.+|+++ +.++ .
T Consensus 10 ~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 10 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 456777776 7788999999999999999999984 47888888 777776654 6789999999999 6654 3
Q ss_pred eEEEeccccccCChH
Q 018565 249 DAAIIKWVLHDWGDD 263 (354)
Q Consensus 249 D~i~~~~~lh~~~~~ 263 (354)
...+..|.-++.+.+
T Consensus 86 ~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 86 SYKIFGNIPYNISTD 100 (235)
T ss_dssp CCEEEEECCGGGHHH
T ss_pred cceeeeeehhhhhHH
Confidence 445567766665544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.21 E-value=1.4e-06 Score=73.47 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=70.5
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc-c
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-A 248 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-~ 248 (354)
...+++.+. ..+..+|||||||+|.++..|++.. .+++++|+ +.+++.+++ .++++++.+|+++ +.+. .
T Consensus 18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 456777776 7788999999999999999999983 47899998 777777664 4789999999999 7664 4
Q ss_pred eEEEeccccccCChHHHHHHH
Q 018565 249 DAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 249 D~i~~~~~lh~~~~~~~~~~L 269 (354)
+..+..+.-++.+.+-..+++
T Consensus 94 ~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 94 RYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHH
T ss_pred eeeEeeeeehhhhHHHHHHHh
Confidence 556667887888876544444
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=1.2e-06 Score=75.27 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C-CCcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G-VPEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~~~~D~i~ 252 (354)
+++.+||-||+|.|..+..+++..+..+++.+|+ |++++.+++ .+|++++.+|... . ...||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4568999999999999999998777789999999 999888764 6799999999876 2 23499998
Q ss_pred eccccccCChH--HHHHHHHHHHHhcCCCCceEEEE
Q 018565 253 IKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 253 ~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
.-..-..-+.. --.++++.+++.|+| +|.++..
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~-~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE-DGIFVAQ 188 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE-EEEEEEE
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCC-CceEEEe
Confidence 75321110000 134789999999999 8876653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=1.6e-06 Score=69.92 Aligned_cols=94 Identities=7% Similarity=0.013 Sum_probs=68.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC--C--CCcceEEEecccc
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD--G--VPEADAAIIKWVL 257 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~--~--~~~~D~i~~~~~l 257 (354)
...+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..+++++.+|.++ . -..||+|++.-..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3579999999999999998887553 7899999 777776654 5678899998876 2 2349999996543
Q ss_pred ccCChHHHHHHHHHHHH--hcCCCCceEEEEee
Q 018565 258 HDWGDDECIKILKNCKE--AITKDKGKVIIVEA 288 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~--~L~p~gG~lli~e~ 288 (354)
. .....+++..+.+ .|+| +|.+ ++|.
T Consensus 122 ~---~~~~~~~l~~l~~~~~L~~-~~iI-iiE~ 149 (183)
T d2fpoa1 122 R---RGLLEETINLLEDNGWLAD-EALI-YVES 149 (183)
T ss_dssp S---TTTHHHHHHHHHHTTCEEE-EEEE-EEEE
T ss_pred c---cchHHHHHHHHHHCCCCCC-CeEE-EEEe
Confidence 3 2334456666654 5888 6644 4554
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=1.2e-06 Score=75.54 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=74.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CC-CcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GV-PEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~-~~~D~i~ 252 (354)
+.+.+||-||+|.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|... .. ..||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998777889999999 999988864 6899999999776 22 3599999
Q ss_pred eccccccCChH---HHHHHHHHHHHhcCCCCceEEEE
Q 018565 253 IKWVLHDWGDD---ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 253 ~~~~lh~~~~~---~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+-.. +..... .-.++++.+++.|+| ||.+++.
T Consensus 157 ~D~~-~p~~~~~~L~t~eF~~~~~~~L~~-~Gi~v~q 191 (285)
T d2o07a1 157 TDSS-DPMGPAESLFKESYYQLMKTALKE-DGVLCCQ 191 (285)
T ss_dssp EECC------------CHHHHHHHHHEEE-EEEEEEE
T ss_pred EcCC-CCCCcccccccHHHHHHHHHhcCC-CCeEEEe
Confidence 8532 211111 124679999999999 8877664
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=9.3e-07 Score=60.04 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
+.|++.+...++|.|+.|||+.+|+++..+.|+|..|+..|++++.+ +++|++++.
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~----~g~y~lG~~ 63 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKK----DKRYVPGYK 63 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECT----TSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC----CCCEeecHH
Confidence 45778887766799999999999999999999999999999999986 488999875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.14 E-value=1.5e-06 Score=75.51 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=72.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---C-CCcceEEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---G-VPEADAAI 252 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~~~~D~i~ 252 (354)
+.+.+||-||+|.|..+..+++..|..+++.+|+ +.+++.+++ .+|++++.+|..+ . ...||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4568999999999999999998777678999999 999887764 5899999999877 2 23599999
Q ss_pred eccccccCChH--HHHHHHHHHHHhcCCCCceEEEE
Q 018565 253 IKWVLHDWGDD--ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 253 ~~~~lh~~~~~--~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+-..--.-+.. -..++++.+++.|+| ||.++..
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~-~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKE-DGILSSQ 219 (312)
T ss_dssp ECCC-------------HHHHHHHHEEE-EEEEEEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCC-CcEEEEe
Confidence 74321111111 235789999999999 8877664
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.13 E-value=2e-06 Score=74.68 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=72.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCCC-------CCcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDG-------VPEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~-------~~~~D~i 251 (354)
..+.+|||+.||+|.++..+++. +.+++.+|. +.+++.+++ ..+++++.+|.++- -..||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 45689999999999999998875 558999999 888888764 34799999999862 1349999
Q ss_pred Eeccc---cc----cCC-hHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 252 IIKWV---LH----DWG-DDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 252 ~~~~~---lh----~~~-~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
++.-. -. .|. .+....+++.+.++|+| ||.+++...
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~-~g~~ll~t~ 252 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP-KALGLVLTA 252 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT-TCCEEEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCC-CCCEEEEec
Confidence 98311 10 011 22345677788899999 888776654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.10 E-value=2.6e-06 Score=73.58 Aligned_cols=97 Identities=22% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----------CCCeEEeecCCCC---CC--CcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----------CHGVEHVGGDMFD---GV--PEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~--~~~D~i 251 (354)
+++.+||=||+|.|..+..+++..|..+++.+|+ +++++.+++ .+|++++.+|..+ .. ..||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4678999999999999999999777678999999 899888764 6999999999765 22 259999
Q ss_pred EeccccccCChH---HHHHHHHHHHHhcCCCCceEEEE
Q 018565 252 IIKWVLHDWGDD---ECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 252 ~~~~~lh~~~~~---~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
+.-..= ..... --.++++.+++.|+| ||.+++.
T Consensus 159 i~D~~d-p~~~~~~L~t~eF~~~~~~~L~~-~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSSD-PIGPAKELFEKPFFQSVARALRP-GGVVCTQ 194 (290)
T ss_dssp EECCCC-TTSGGGGGGSHHHHHHHHHHEEE-EEEEEEE
T ss_pred EEcCCC-CCCcchhhCCHHHHHHHHHhcCC-CcEEEEe
Confidence 974321 11111 135789999999999 8877764
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=6.4e-06 Score=67.31 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc---c---CCCeEEeecCCCCC--CCcceEEEeccccccC
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE---K---CHGVEHVGGDMFDG--VPEADAAIIKWVLHDW 260 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~v~~~~~d~~~~--~~~~D~i~~~~~lh~~ 260 (354)
..+++|||+|.|.-+.-++-.+|+.+++.+|. ..-+.-.+ . -++++++.....+. ...||+|+++.+--
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~-- 143 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFAS-- 143 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSS--
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcC--
Confidence 46899999999999999999999999999997 33333222 1 46899999888873 33599998877532
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 261 GDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 261 ~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
...++.-+...+++ +|++++.-
T Consensus 144 ----~~~ll~~~~~~l~~-~g~~~~~K 165 (207)
T d1jsxa_ 144 ----LNDMVSWCHHLPGE-QGRFYALK 165 (207)
T ss_dssp ----HHHHHHHHTTSEEE-EEEEEEEE
T ss_pred ----HHHHHHHHHHhcCC-CcEEEEEC
Confidence 34678888888999 99988754
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.04 E-value=4.8e-06 Score=73.48 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=72.5
Q ss_pred CCCceEEEecCCccHHHHHHHHH-----CCCCeEEEeec-hHHhhhccc-----CCCeEEeecCCCCC--CCcceEEEec
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKA-----FPRIRGINFDL-PHVVCVAEK-----CHGVEHVGGDMFDG--VPEADAAIIK 254 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~--~~~~D~i~~~ 254 (354)
....+|+|.+||+|.++..+.++ .+..+++++|+ +.++..|+. .....+..+|.+.. ...||+|+++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 45689999999999999988754 24557899999 777776653 56777888888773 3459999998
Q ss_pred cccccCChH----------------HHHHHHHHHHHhcCCCCceEEEEe
Q 018565 255 WVLHDWGDD----------------ECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 255 ~~lh~~~~~----------------~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
-........ .-..++.++.+.|+| ||++.++-
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~-~G~~~~I~ 243 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP-GGYLFFLV 243 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC-CCceEEEe
Confidence 655322111 123468999999999 99987754
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.02 E-value=2.7e-06 Score=74.53 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=71.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCCC------C-CcceEE
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFDG------V-PEADAA 251 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~~------~-~~~D~i 251 (354)
.++.+|||+.||+|.++..++.. ...+++.+|+ +..++.+++ ..+++++.+|.++- . ..||+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 35789999999999999887764 2346899999 777776654 36799999999762 1 249999
Q ss_pred Eeccccc------cCC-hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 252 IIKWVLH------DWG-DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 252 ~~~~~lh------~~~-~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
++--.-. -+. .....++++.+.++|+| ||.|+++.
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p-gG~l~~~s 263 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE-NGLIIAST 263 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE-EEEEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC-CCEEEEEe
Confidence 9842210 011 12345789999999999 99887744
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.95 E-value=2e-05 Score=65.06 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=71.3
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHhhhcccCCCeEEeecCCCC-C-CCcceEEEe
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPR-IRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-G-VPEADAAII 253 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~-~~~~D~i~~ 253 (354)
.+++.+. ...+.+|||.|||+|.++..+.++.+. ..++++|+ +.....+ ....+..+|++. + ...||+++.
T Consensus 10 ~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~ 84 (223)
T d2ih2a1 10 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 84 (223)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecc
Confidence 3444444 456789999999999999998876554 56899998 5444333 345677888877 3 335999988
Q ss_pred ccccccCC---h------------------------HHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVLHDWG---D------------------------DECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~lh~~~---~------------------------~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
........ . +....++.++.+.|+| ||++.++-
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~-~G~~~~I~ 144 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP-GGVLVFVV 144 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc-CCceEEEE
Confidence 75542210 0 0123567888899999 99988764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.90 E-value=8.7e-06 Score=65.32 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=69.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCCC-------CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFDG-------VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-------~~~~D~i~~ 253 (354)
.+.+|||+.||+|.++.+.+.+... +++.+|. +.++..+++ ..++++..+|.++- ..+||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5789999999999999999987543 7899998 777776654 45899999998751 125999998
Q ss_pred ccccccCChHHHHHHHHHHHH--hcCCCCceEEEEeee
Q 018565 254 KWVLHDWGDDECIKILKNCKE--AITKDKGKVIIVEAI 289 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~--~L~p~gG~lli~e~~ 289 (354)
--..+ ......+|..+.+ .|+| +| ++++|..
T Consensus 120 DPPY~---~~~~~~~l~~i~~~~~L~~-~g-iIi~E~~ 152 (182)
T d2fhpa1 120 DPPYA---KQEIVSQLEKMLERQLLTN-EA-VIVCETD 152 (182)
T ss_dssp CCCGG---GCCHHHHHHHHHHTTCEEE-EE-EEEEEEE
T ss_pred chhhh---hhHHHHHHHHHHHCCCCCC-CE-EEEEEcC
Confidence 55432 2334567777754 5898 77 4556654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.87 E-value=2.3e-05 Score=62.62 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=80.7
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC-C-------
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD-G------- 244 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~-~------- 244 (354)
..+++..+. ..++..++|..+|.|.++..++++ +.+++++|. |+++..++. ..++.+..++|.+ .
T Consensus 7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 355566555 567889999999999999999997 568999999 888887765 6899999998876 2
Q ss_pred CCcceEEEecccc-----ccCCh--HHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 245 VPEADAAIIKWVL-----HDWGD--DECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 245 ~~~~D~i~~~~~l-----h~~~~--~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
...+|.|++-.-+ .+-.. ......|....+.|+| ||++++....
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~-gg~~~ii~fh 133 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP-GGRLVVIAFH 133 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE-EEEEEEEECS
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC-CCeEEEEecc
Confidence 2347887763211 11110 1234578889999999 9999987754
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00015 Score=57.65 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=72.0
Q ss_pred HHHhcCCCccCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeechHHhhhcccCCCeEEeecCCCC-C----------C
Q 018565 178 AIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDLPHVVCVAEKCHGVEHVGGDMFD-G----------V 245 (354)
Q Consensus 178 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~----------~ 245 (354)
++.+.+. .+.+..+|||+||+.|.++..+.+. .+...++++|+..+ +..+.+.+..+|+.+ . .
T Consensus 12 EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhccC
Confidence 3444444 2567889999999999999998875 45578899998432 235778899999987 2 1
Q ss_pred CcceEEEeccccccCCh---------HHHHHHHHHHHHhcCCCCceEEE
Q 018565 246 PEADAAIIKWVLHDWGD---------DECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 246 ~~~D~i~~~~~lh~~~~---------~~~~~~L~~~~~~L~p~gG~lli 285 (354)
..+|+|++-.....-.. +-+...+.-+.+.|++ ||.+++
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~-gG~fV~ 134 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP-GGSFVV 134 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEE
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC-CCcEEE
Confidence 24899988655432111 1245667777889999 998887
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.62 E-value=6.7e-05 Score=62.33 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=70.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc---c---CCCeEEeecCCCC-----CC-CcceEEEe
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE---K---CHGVEHVGGDMFD-----GV-PEADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~v~~~~~d~~~-----~~-~~~D~i~~ 253 (354)
+....+++|||+|.|.-+.-++=.+|+.+++.+|. ..-+.-.+ . -.++.++...+.+ +. ..||+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 44567999999999999999998899999999997 33332222 1 4678887776543 12 35999999
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+-. ...++.-+...+++ ||++++.-
T Consensus 148 RAva~------l~~ll~~~~~~l~~-~g~~i~~K 174 (239)
T d1xdza_ 148 RAVAR------LSVLSELCLPLVKK-NGLFVALK 174 (239)
T ss_dssp ECCSC------HHHHHHHHGGGEEE-EEEEEEEE
T ss_pred hhhhC------HHHHHHHHhhhccc-CCEEEEEC
Confidence 87542 34788889999999 99888743
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00036 Score=59.24 Aligned_cols=91 Identities=14% Similarity=0.249 Sum_probs=64.0
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeecCCCC-CCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGGDMFD-GVP 246 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~~ 246 (354)
...+++... ..+..+|||||+|.|.++..|+++.. +++++++ +..++..++ ..+++++.+|+.+ +.+
T Consensus 10 ~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 10 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 455666666 66778999999999999999999854 7778887 666665543 3689999999999 666
Q ss_pred cceEEEeccccccCChHHHHHHHHHHHHh
Q 018565 247 EADAAIIKWVLHDWGDDECIKILKNCKEA 275 (354)
Q Consensus 247 ~~D~i~~~~~lh~~~~~~~~~~L~~~~~~ 275 (354)
.++.++. |.-++.+ ..++.++...
T Consensus 86 ~~~~vV~-NLPY~Is----s~il~~~~~~ 109 (278)
T d1zq9a1 86 FFDTCVA-NLPYQIS----SPFVFKLLLH 109 (278)
T ss_dssp CCSEEEE-ECCGGGH----HHHHHHHHHC
T ss_pred hhhhhhc-chHHHHH----HHHHHHHHhh
Confidence 6655544 4334333 3455555443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.53 E-value=0.00024 Score=58.77 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCceEEEecCCccHHHHHHHH----HCCCCeEEEeec-hHHhhhcc-cCCCeEEeecCCCCC-----CC--cceEEEecc
Q 018565 189 GIETLVDIGGNDGTTLRTLTK----AFPRIRGINFDL-PHVVCVAE-KCHGVEHVGGDMFDG-----VP--EADAAIIKW 255 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a~-~~~~v~~~~~d~~~~-----~~--~~D~i~~~~ 255 (354)
.+.+|||||++.|..+..++. ..++.+++++|+ +....... ..+++++..+|..++ +. .+|+|++-.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 368999999999987765553 246789999998 44433332 378999999997662 12 378777644
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
. |.. +.+..-+ .....|+| ||.++|-|.
T Consensus 160 ~-H~~--~~v~~~~-~~~~lLk~-GG~iIveD~ 187 (232)
T d2bm8a1 160 A-HAN--TFNIMKW-AVDHLLEE-GDYFIIEDM 187 (232)
T ss_dssp S-CSS--HHHHHHH-HHHHTCCT-TCEEEECSC
T ss_pred C-cch--HHHHHHH-HHhcccCc-CCEEEEEcC
Confidence 3 652 3333334 46689999 888877554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.53 E-value=0.00035 Score=57.59 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=67.1
Q ss_pred HHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-H--Hhhhccc---CCCeEEeec-CCCC-CCCcc
Q 018565 177 RAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLP-H--VVCVAEK---CHGVEHVGG-DMFD-GVPEA 248 (354)
Q Consensus 177 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~--~~~~a~~---~~~v~~~~~-d~~~-~~~~~ 248 (354)
.++.+.+- +.+..+|+|+|||.|.++..++.+.+...+.++++- . ....... .+-+++... |++. +....
T Consensus 56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 44555554 677889999999999999999988666666666661 1 1111111 233555554 3333 33358
Q ss_pred eEEEeccccccCC----hHHHHHHHHHHHHhcCCCCceEEE
Q 018565 249 DAAIIKWVLHDWG----DDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 249 D~i~~~~~lh~~~----~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
|+|+|-..-+.-+ .....++|.-+.+.|+| ||.+++
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~-gg~Fvv 173 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN-NTQFCV 173 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT-TCEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHccc-CCEEEE
Confidence 9999865433211 12345778888899999 997655
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=7.8e-05 Score=62.63 Aligned_cols=83 Identities=8% Similarity=0.056 Sum_probs=60.1
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc----CCCeEEeecCCCC-CCCc--
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK----CHGVEHVGGDMFD-GVPE-- 247 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~~~-- 247 (354)
...+++... ..+...|||||||.|.++..|++.. .+++++++ +..++..+. .++++++.+|+.+ +.+.
T Consensus 10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 345555555 5678899999999999999999874 47888888 777776654 4789999999998 4332
Q ss_pred ----ceEEEeccccccCCh
Q 018565 248 ----ADAAIIKWVLHDWGD 262 (354)
Q Consensus 248 ----~D~i~~~~~lh~~~~ 262 (354)
--+.+..|.-++.+.
T Consensus 86 ~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHTSCEEEEEECCTTTHH
T ss_pred cccCCCeEEEecchHHHHH
Confidence 124555666665544
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=97.33 E-value=6.5e-05 Score=53.38 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+++|.-..++.|+..|.. ++.++.|||+.+|+++..+++.|+.|...|++....
T Consensus 16 ~~kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~is~stvS~HL~~L~~aglV~~~r 70 (98)
T d1r1ta_ 16 FFAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK 70 (98)
T ss_dssp HHHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 3456667788899999976 799999999999999999999999999999998776
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=97.29 E-value=6.3e-05 Score=52.97 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=52.2
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCce---EecCc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMA---FQQTP 98 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~ 98 (354)
+++|.-..++.|+..|.. ++.++.|||+.+|+++..+++.|+.|...|++..... |+ |+++.
T Consensus 12 fkaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~s~~~vS~HL~~L~~~glv~~~r~----G~~~~Y~l~~ 76 (94)
T d1r1ua_ 12 FKALGDYNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ----GQSMIYSLDD 76 (94)
T ss_dssp HHHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE----TTEEEEEESS
T ss_pred HHHhCCHHHHHHHHHHHc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCCceEEEEE----CCEEEEEECc
Confidence 445566678888888887 7999999999999999999999999999999987762 43 76664
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.17 E-value=0.00028 Score=45.82 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=48.0
Q ss_pred HHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCc-eeeccCCCCCceEecCc
Q 018565 34 VKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKF-FKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 34 l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~y~~t~ 98 (354)
++.--...|++.|.+..+++|+.+||+.+|+++.-+.|-|..|...|+ +.... +.|.+.+
T Consensus 4 ~k~eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~-----gGY~L~~ 64 (65)
T d1j5ya1 4 VRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATP-----RGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEET-----TEEECCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEEeC-----CCEEeCC
Confidence 344455678888865446899999999999999999999999999997 55544 6898763
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.16 E-value=0.00034 Score=55.72 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=65.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc--------CCCeEEeecCCCC----C--CCcceEEEe
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK--------CHGVEHVGGDMFD----G--VPEADAAII 253 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~----~--~~~~D~i~~ 253 (354)
...+|||+-||||.++.+.+.+... +++.+|. .+.+...++ .....+...|..+ . .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3579999999999999999988643 7899998 666655543 3356666666543 1 234999988
Q ss_pred ccccccCChHHHHHHHHHHHH--hcCCCCceEEEEeeee
Q 018565 254 KWVLHDWGDDECIKILKNCKE--AITKDKGKVIIVEAII 290 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~--~L~p~gG~lli~e~~~ 290 (354)
--... ......+|..+.+ +|++ +| ++++|...
T Consensus 122 DPPY~---~~~~~~~l~~l~~~~~L~~-~~-liiiE~~~ 155 (183)
T d2ifta1 122 DPPFH---FNLAEQAISLLCENNWLKP-NA-LIYVETEK 155 (183)
T ss_dssp CCCSS---SCHHHHHHHHHHHTTCEEE-EE-EEEEEEES
T ss_pred chhHh---hhhHHHHHHHHHHhCCcCC-Cc-EEEEEecC
Confidence 55433 2334567777654 6888 65 55666543
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=97.13 E-value=0.00017 Score=52.12 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTP 98 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~ 98 (354)
.+++|.-..++.|+..|... ++.++.|||+.+|+++..+++.|+.|...|++..... | .|++++
T Consensus 24 ~~kaLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~s~s~vS~HL~~L~~aGlv~~~r~----G~~~~Y~l~~ 90 (108)
T d1u2wa1 24 ILKAIADENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE----GKLALYSLGD 90 (108)
T ss_dssp HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--------CCEEEESC
T ss_pred HHHHhCCHHHHHHHHHHHhC-CCccHHHHHHHHccChhHHHHHHHHHHHCCeeEEEEE----CCEEEEEECH
Confidence 45677777899999988653 7999999999999999999999999999999988873 4 366654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.05 E-value=0.00062 Score=61.71 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=73.9
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHCC-------------CCeEEEeec-hHHhhhccc--------CCC
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAFP-------------RIRGINFDL-PHVVCVAEK--------CHG 233 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~~ 233 (354)
++.+++.++ .....+|+|-.||+|.++..+.+... .....++|. +.+...++. ...
T Consensus 151 v~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 151 IQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 344444444 34568999999999999988776432 234788888 666655542 345
Q ss_pred eEEeecCCCCCC--CcceEEEeccccccCC---------------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 234 VEHVGGDMFDGV--PEADAAIIKWVLHDWG---------------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 234 v~~~~~d~~~~~--~~~D~i~~~~~lh~~~---------------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+..+|.+... ..||+|+++-....-. ...-..++.++.+.|+| ||++.++-
T Consensus 229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~-~G~~~iI~ 298 (425)
T d2okca1 229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT-GGRAAVVL 298 (425)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC-CCeEEEEe
Confidence 667788888843 3499999976653211 11124689999999999 99888754
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.02 E-value=0.0017 Score=55.65 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=72.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhccc---------CCCeEEeecCCCCCCC------c-----
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAEK---------CHGVEHVGGDMFDGVP------E----- 247 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~~------~----- 247 (354)
.+...||.+|||-=.....+ ...++++++-+|.|++++.-++ ..+..++..|+.++.. +
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 35567888999988877665 3357888999999988874332 4566778888876421 1
Q ss_pred ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 248 ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 248 ~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
.-++++-.++++++.+++.++|+.+.+...| |+.|++
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~-GS~l~~ 203 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV-GSRIAV 203 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT-TCEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCC-CCEEEE
Confidence 3467777889999999999999999999998 776654
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.00012 Score=52.16 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=54.2
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccc
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSR 101 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~ 101 (354)
.++..-.++.|+..|... ++.|+.+||+.+|+++..+.+.|+.|...|+++..... |+ .-.|++|+.|+
T Consensus 11 ~~l~~p~r~~IL~~L~~~-~~~~~~eLa~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~ 81 (100)
T d1ub9a_ 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred HhcCCHHHHHHHHHhccC-CCeeHHHHHHHHhhccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHH
Confidence 344456678888999654 79999999999999999999999999999999866421 10 11499998875
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0025 Score=56.08 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=63.4
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCCCC-------CcceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFDGV-------PEADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~-------~~~D~i~ 252 (354)
..+..+|||+-||+|.++..|+++ ..+++++|. ++.++.|+. ..+++|+.+|..+.. ..+|+|+
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 456789999999999999999886 358999999 888887764 578999999887632 2379988
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEE
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
+- -|..-+.++++.+.+. +| .-.++|
T Consensus 288 lD-----PPR~G~~~~~~~l~~~-~~-~~ivYV 313 (358)
T d1uwva2 288 LD-----PARAGAAGVMQQIIKL-EP-IRIVYV 313 (358)
T ss_dssp EC-----CCTTCCHHHHHHHHHH-CC-SEEEEE
T ss_pred eC-----CCCccHHHHHHHHHHc-CC-CEEEEE
Confidence 72 2222223455555554 56 444444
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00053 Score=44.09 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=45.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
.++.|+..|.+ ++.+|.+|||+.+|++...+.+-+..|...|+..+..+ +..|+++.
T Consensus 6 ~~~~iL~~L~~-~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G~~I~~~~---g~GY~L~~ 62 (63)
T d1biaa1 6 VPLKLIALLAN-GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVP---GKGYSLPE 62 (63)
T ss_dssp HHHHHHHHHTT-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEET---TTEEECSS
T ss_pred HHHHHHHHHHH-CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCCcEEEeC---CCeEEeCC
Confidence 35668888876 36899999999999999999999999999998444432 24688763
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.71 E-value=0.00057 Score=54.89 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=53.5
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC----CceEecCcccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG----SMAFQQTPLSR 101 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~----~~~y~~t~~~~ 101 (354)
.++|.--.+..|+..|.. +|.|+.+||+.+|+++..+++.|+.|...|+++......+ ...|++|..+.
T Consensus 9 ~~~l~~~~R~~Il~~L~~--~~~~~~ela~~l~~s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 9 LDVLGNETRRRILFLLTK--RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 345555577788888876 7999999999999999999999999999999986542111 12488887653
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.70 E-value=0.00063 Score=54.42 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCC--C--CceEecCccc
Q 018565 30 NMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQ--G--SMAFQQTPLS 100 (354)
Q Consensus 30 ~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~--~--~~~y~~t~~~ 100 (354)
...+|..-.+..|+..|.. +|.|+.|||+.+|+++..+.+.|+.|...|+++...... | .-.|++|+.+
T Consensus 12 ~~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~ 84 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV 84 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence 4567777788899999976 899999999999999999999999999999997553210 0 1237777654
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=96.67 E-value=0.00076 Score=44.52 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=41.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|+..|... +++|..|||+.+|+++..+.++++.|...|++.+.+
T Consensus 9 ~~Il~~l~~~-g~~sr~eLa~~~glS~~Tv~~~l~~L~~~Glv~e~~ 54 (71)
T d1z05a1 9 GRVYKLIDQK-GPISRIDLSKESELAPASITKITRELIDAHLIHETT 54 (71)
T ss_dssp HHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 4577788765 799999999999999999999999999999998765
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=96.57 E-value=0.00079 Score=43.07 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=40.6
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|+..|.+ +|+|..|||+.+|+++..+.++++-|...|++.+.+
T Consensus 3 ~Il~~i~~--~pisr~eLa~~~gls~~TVs~~v~~L~~~GlV~e~~ 46 (62)
T d2hoea1 3 RILKRIMK--SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 46 (62)
T ss_dssp CSHHHHHH--SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHH--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 46788876 799999999999999999999999999999998876
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.56 E-value=0.0005 Score=47.18 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=42.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccch
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRR 102 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~ 102 (354)
+++|..+||+.+++++..+.++|+-|...|++++..+ ...-.|.+|+.|+.
T Consensus 20 ~~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D-~R~~~i~LT~~G~~ 70 (85)
T d3ctaa1 20 AYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVT-KRGQILNITEKGLD 70 (85)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeecc-cccccceECHHHHH
Confidence 6899999999999999999999999999999998652 00123778888763
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.45 E-value=0.0037 Score=47.03 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred cccccchHHHHHHHHHhhhHHHHHHH-----HHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceee
Q 018565 10 MKKEEDDAKVEIWKYVFGFTNMAVVK-----CAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKE 84 (354)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~l~-----~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~ 84 (354)
.+.++.+....++..+..-.....-. +..++-++..|... +++|+.+||+.+++++..+.+.++.|+..|++++
T Consensus 4 ~~~dl~~~l~~~~~~~~~~~~~~~~~~~~~lt~~q~~vL~~l~~~-~~~t~~~la~~l~~~~~~vsr~l~~L~~~G~v~r 82 (141)
T d1lnwa_ 4 VNPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRR 82 (141)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSS-TTCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHC-CCCCHHHHHHHHCccHhHHHHHHHHHHHhhceee
Confidence 34455555555554444333333211 33456677777664 6799999999999999999999999999999987
Q ss_pred ccCC-CC-CceEecCcccchh
Q 018565 85 VPTS-QG-SMAFQQTPLSRRL 103 (354)
Q Consensus 85 ~~~~-~~-~~~y~~t~~~~~l 103 (354)
.... |+ .-.+.+|+.|+.+
T Consensus 83 ~~~~~D~R~~~l~lT~~G~~~ 103 (141)
T d1lnwa_ 83 ERNPSDQRSFQLFLTDEGLAI 103 (141)
T ss_dssp EECSSSSSSEEEEECHHHHHH
T ss_pred eccCCCCcchhhccCHHHHHH
Confidence 7522 11 2237788777533
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.41 E-value=0.052 Score=46.65 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=82.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHhhhcc---------------------------cCCCeEEeecC
Q 018565 188 DGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDLPHVVCVAE---------------------------KCHGVEHVGGD 240 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------------------------~~~~v~~~~~d 240 (354)
.+...|+-+|||.=.....+...+|+++++-+|.|++++.-+ ..++.+++..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 345789999999999888998889999999999988876321 04678889999
Q ss_pred CCC-CC----------Cc-ceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 241 MFD-GV----------PE-ADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 241 ~~~-~~----------~~-~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
+.+ .. ++ .-++++-.++.+++++.+.++++.+.+..+. +.+++.|.+.+.
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~--~~~i~YE~i~~~ 236 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH--GLWISYDPIGGS 236 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS--EEEEEEEECCCC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC--ceEEEeccCCCC
Confidence 887 21 11 3478888999999999999999999998864 788889998654
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=96.39 E-value=0.0012 Score=49.74 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=52.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++-++..|... ++.|+.+||+.+++++..+.+.++.|...|++++....++ .-..++|+.|+.+.
T Consensus 33 ~q~~iL~~l~~~-~~~t~~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 100 (140)
T d2etha1 33 TELYAFLYVALF-GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 100 (140)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHH
Confidence 556677888765 6899999999999999999999999999999987753211 12488888876443
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=96.37 E-value=0.0022 Score=41.19 Aligned_cols=42 Identities=19% Similarity=0.450 Sum_probs=38.3
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
.|-++.|||+.+|+++..++.+|+.|+..|.+.+.. ++.|.+
T Consensus 22 ~PP~vrdl~~~l~~~e~~~~~lL~~l~~~G~lvkI~----~d~yfh 63 (64)
T d1lvaa3 22 QPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN----DEFYWH 63 (64)
T ss_dssp SCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESS----SSBEEE
T ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec----cccccc
Confidence 699999999999999999999999999999999987 467653
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0016 Score=42.67 Aligned_cols=46 Identities=11% Similarity=0.309 Sum_probs=40.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..|+..|... +|+|..|||+.+|+++..+.++++.|...|++.+.+
T Consensus 8 ~~Il~~i~~~-g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~glv~e~g 53 (70)
T d1z6ra1 8 GAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELE 53 (70)
T ss_dssp HHHHHHHHSS-CSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 3477888775 899999999999999999999999999999998765
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.22 E-value=0.0018 Score=44.55 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc-hhhc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR-RLMR 105 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~ 105 (354)
++.+...|...++++.+.+...|+.|...|+++..+ +.|.+|+.|. ++..
T Consensus 17 ~g~~kT~i~~~aNLs~~~~~kyl~~L~~~GLI~~~~-----~~Y~iT~kG~~~L~~ 67 (90)
T d1r7ja_ 17 SGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG-----KQYMLTKKGEELLED 67 (90)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEECHHHHHHHHH
T ss_pred CCCCccHHHHHcCCCHHHHHHHHHHHHHCCCeeecC-----CEEEECccHHHHHHH
Confidence 356789999999999999999999999999999876 8999999996 4443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.98 E-value=0.064 Score=46.48 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=70.4
Q ss_pred CCCceEEEecCCccHHHH-------HHHH-H--------CCCCeEEEeechH-----Hhhhccc---C-C--CeEEeecC
Q 018565 188 DGIETLVDIGGNDGTTLR-------TLTK-A--------FPRIRGINFDLPH-----VVCVAEK---C-H--GVEHVGGD 240 (354)
Q Consensus 188 ~~~~~vLDvG~G~G~~~~-------~l~~-~--------~p~~~~~~~D~~~-----~~~~a~~---~-~--~v~~~~~d 240 (354)
+..-+|.|+||.+|..+. ..++ + -|.+++..-|+|. ....... . . -+.-++|.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 455789999999998773 2222 1 2566778888852 1222211 1 1 24457789
Q ss_pred CCC-CCCc--ceEEEeccccccCCh-------------------------------HHHHHHHHHHHHhcCCCCceEEEE
Q 018565 241 MFD-GVPE--ADAAIIKWVLHDWGD-------------------------------DECIKILKNCKEAITKDKGKVIIV 286 (354)
Q Consensus 241 ~~~-~~~~--~D~i~~~~~lh~~~~-------------------------------~~~~~~L~~~~~~L~p~gG~lli~ 286 (354)
|.. -+|+ -|+++++..+|-++. .+...+|+.=.+-|+| ||+++++
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~-GG~mvl~ 208 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP-GGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT-TCEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEE
Confidence 998 4563 899999999986531 1234577777778999 9999998
Q ss_pred eeeeCCCC
Q 018565 287 EAIIEEDD 294 (354)
Q Consensus 287 e~~~~~~~ 294 (354)
-..+++..
T Consensus 209 ~~gr~~~~ 216 (359)
T d1m6ex_ 209 ILGRRSED 216 (359)
T ss_dssp EEECSSSS
T ss_pred EeccCCCC
Confidence 88776543
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.94 E-value=0.0033 Score=47.55 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=50.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.++..|...+|++|+.+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.|+.+.
T Consensus 35 ~q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~ 103 (145)
T d2hr3a1 35 SQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 103 (145)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence 45666677754346899999999999999999999999999999987752111 12488888886443
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=95.92 E-value=0.0014 Score=47.09 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=38.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|+..|...++|+|+.+||+.+|+++..+.+.|+-|...|++++..
T Consensus 25 ~iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCccHhHHHHHHHHHHHCCCEEEee
Confidence 3444443223789999999999999999999999999999998775
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.017 Score=49.71 Aligned_cols=55 Identities=7% Similarity=0.007 Sum_probs=43.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---CCCeEEeecCCCC
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---CHGVEHVGGDMFD 243 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~v~~~~~d~~~ 243 (354)
....|||||+|.|.++..|++..---++++++. +...+..++ .++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998632237888888 555555543 6789999999874
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=95.75 E-value=0.0066 Score=44.75 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=37.0
Q ss_pred hhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 43 AEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 43 f~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+-.|+.+ +++|.++||+.+|++|..++++|+.|...|+++...
T Consensus 10 L~~la~~-~~~ss~~IA~~~~~~~~~v~kIl~~L~~aglV~s~r 52 (127)
T d1xd7a_ 10 LSLISMD-EKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRA 52 (127)
T ss_dssp HHHHHTC-SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHhcC-CCCCHHHHHHHhCcCHHHHHHHHHHHHHhCcccccC
Confidence 3334443 689999999999999999999999999999998775
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=95.74 E-value=0.0097 Score=44.69 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=50.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhhc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~~ 105 (354)
.++.++..|... +|.|+.+||+.+++++..+.+.++-|...|++++....+ ++ .+.+|+.|+.+..
T Consensus 36 ~q~~iL~~l~~~-~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~~-D~R~~~v~lT~~G~~~~~ 104 (143)
T d1s3ja_ 36 AQLFVLASLKKH-GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTK-DRRVIDLSLTDEGDIKFE 104 (143)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS-CTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHhhhheeeeecC-CCCceEEEECHHHHHHHH
Confidence 334466777654 689999999999999999999999999999998775311 22 3888888864443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.016 Score=48.92 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=68.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CC-cceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VP-EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~-~~D~i~~~~ 255 (354)
..++.+|||+-+|.|.-+..++....+.+++..|. +.-+...++ ...+.....|... . .+ .||.|++--
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 45678999999999999999999888888999998 444443332 3344444444443 1 22 499998722
Q ss_pred ------cc-------ccCChHH-------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 256 ------VL-------HDWGDDE-------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 256 ------~l-------h~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
++ ..|...+ =.++|+++.+.||| ||+|+-+.-.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~-gG~lvYsTCS 232 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT-GGTLVYATCS 232 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE-EEEEEEEESC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC-CceEEEeeec
Confidence 22 1222221 14688899999999 9988776533
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.59 E-value=0.034 Score=47.56 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=69.0
Q ss_pred cCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C--CCcceEEEecc
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAFP-RIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G--VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~--~~~~D~i~~~~ 255 (354)
..++.+|||+-+|.|.-+..++.... ...++..|. +.-+...+. ..++.+...|... + .+.||.|++--
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45678999999999999999887654 457888888 555544432 4667777777665 2 23599998721
Q ss_pred c------c-------ccCChHH-------HHHHHHHHHHhcCCCCceEEEEeee
Q 018565 256 V------L-------HDWGDDE-------CIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 256 ~------l-------h~~~~~~-------~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
. + ..+..++ =.++|.++.+.+|| ||.|+-+.-.
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~-gG~lVYsTCS 246 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTCS 246 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC-CcEEEEeecc
Confidence 1 1 1122222 24688899999999 9987776533
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=95.58 E-value=0.0056 Score=45.56 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=51.0
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
.++.++..|... ++++|..+||+.+++++..+.++++-|...|++.+....++ .-.+.+|+.|+.+..
T Consensus 30 ~q~~vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~ 100 (135)
T d3broa1 30 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET 100 (135)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHH
Confidence 445556666543 25799999999999999999999999999999987753211 125889988864443
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.47 E-value=0.0053 Score=38.73 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++..|...|..+ +..|..+||+++|+++..+.+-++-|...|++....
T Consensus 4 ~D~kIl~~L~~n-~r~s~~~lA~~~gls~~~v~~Ri~~L~~~giI~~~~ 51 (60)
T d1i1ga1 4 RDKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYT 51 (60)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeEE
Confidence 356678888874 788999999999999999999999999999997554
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.015 Score=53.74 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHHHhcCCCccCCCceEEEecCCccHHHHHHHHHC----C--------------CCeEEEeec-hHHhhhccc-----C
Q 018565 176 MRAIIEGCPEVFDGIETLVDIGGNDGTTLRTLTKAF----P--------------RIRGINFDL-PHVVCVAEK-----C 231 (354)
Q Consensus 176 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p--------------~~~~~~~D~-~~~~~~a~~-----~ 231 (354)
++.+++.+. -....+|+|-.||+|.++....+.. . .....++|+ +.+...++. .
T Consensus 153 v~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 153 IKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 344444444 3456799999999999998765532 1 124788998 666655442 1
Q ss_pred ------CCeEEeecCCCC-C---CCcceEEEeccccccCC------------hHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 232 ------HGVEHVGGDMFD-G---VPEADAAIIKWVLHDWG------------DDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 232 ------~~v~~~~~d~~~-~---~~~~D~i~~~~~lh~~~------------~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..-.+..++++. + .+.||+|+++-.+..-. ...-..++.++.+.|+| ||++.++-
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~-gGr~aiIl 307 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP-GGRAAVVV 307 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE-EEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc-cCcEEEEE
Confidence 122344555554 2 23599999865542100 11123589999999999 99988854
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.43 E-value=0.004 Score=44.63 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=39.2
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeec
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEV 85 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~ 85 (354)
+..|+..|... ++.|+.|||+.+|+++..+.+.|+-|...|++.+.
T Consensus 22 e~~v~~~L~~~-g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 22 DVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHhCCCcchHHHHHHHHHhCCCEEEE
Confidence 34455566544 79999999999999999999999999999999865
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=95.41 E-value=0.0051 Score=46.10 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=38.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
.++|.++||+.+++++..++++|..|...|+|+.... .|.|.+..
T Consensus 22 ~~vss~~IA~~~~i~~~~l~kil~~L~~aGlv~S~rG---~GG~~L~~ 66 (138)
T d1ylfa1 22 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG---PGGAGLLK 66 (138)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC------CCEEESS
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecC---CCCceecC
Confidence 5899999999999999999999999999999987762 46677664
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.32 E-value=0.0066 Score=38.24 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=42.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++..|...|..+ +..|..+||+++|+++..+.+-++-|...|++....
T Consensus 4 ~D~~Il~~L~~n-~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~giI~~~~ 51 (60)
T d2cyya1 4 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 51 (60)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeEE
Confidence 466788889874 788999999999999999999999999999998654
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.22 E-value=0.0098 Score=44.27 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=47.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCC-CC-CceEecCcccchhh
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTS-QG-SMAFQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~-~~-~~~y~~t~~~~~l~ 104 (354)
+.++-.|...++++|+.+||+.+++++..+.++++-|+..|++++.... |+ .-.+.+|+.|+.+.
T Consensus 31 ~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 31 WLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 97 (137)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence 3344455433356899999999999999999999999999999977521 10 11478888876444
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=95.22 E-value=0.011 Score=41.02 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=53.2
Q ss_pred HHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCCC--ceEecCc
Q 018565 22 WKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQGS--MAFQQTP 98 (354)
Q Consensus 22 ~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~ 98 (354)
++++.+=|...+|.. |.. |+....||...+ |+++.-|.+=|+.|...|++++......+ -.|++|+
T Consensus 5 l~ilg~kW~l~Il~~---------L~~--g~~rF~el~~~l~gis~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~ 73 (95)
T d2hzta1 5 LEVIGGKWKCVILCH---------LTH--GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSE 73 (95)
T ss_dssp HHHHCSTTHHHHHHH---------HTT--CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECT
T ss_pred HHHHcCCCHHHHHHH---------HHc--CCCCHHHHHHHhhcCChhHHHHHHHHHHHhHHHhheeccccccchhhhhhh
Confidence 444445555555443 333 799999999997 99999999999999999999877532111 1399999
Q ss_pred ccchhhc
Q 018565 99 LSRRLMR 105 (354)
Q Consensus 99 ~~~~l~~ 105 (354)
.|+.|.+
T Consensus 74 ~G~~L~p 80 (95)
T d2hzta1 74 YGRSLEG 80 (95)
T ss_dssp TGGGGHH
T ss_pred hHHHHHH
Confidence 9886664
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0088 Score=38.06 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=42.5
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++..|+..|..+ +..|..+||+++|+++..+.+=++-|...|++....
T Consensus 6 ~D~~IL~~L~~~-~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~GiI~~~~ 53 (63)
T d2cg4a1 6 LDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR 53 (63)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeEE
Confidence 456788888875 789999999999999999999999999999998654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.09 E-value=0.02 Score=50.30 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=66.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhccc---------------------CCCeEEeecCCCC---
Q 018565 189 GIETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK---------------------CHGVEHVGGDMFD--- 243 (354)
Q Consensus 189 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------------~~~v~~~~~d~~~--- 243 (354)
+..+|||..||+|..++..+...+.-+++..|+ +..++.+++ ...+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999999999888777778999999 888777653 1234555555433
Q ss_pred CCC-cceEEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 244 GVP-EADAAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 244 ~~~-~~D~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
..+ .||+|.+-- |..+ ..+|..+.++++. ||.|.|.-
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~-~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKR-RGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEE-EEEEEEEE
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhcc-CCEEEEEe
Confidence 122 489988754 2222 4689999999998 88887764
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=95.07 E-value=0.012 Score=37.40 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=42.4
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+..|++.|..+ +..|..+||+.+|+++.-+.+=++-|...|++....
T Consensus 6 ~D~~IL~~L~~n-~r~s~~~iA~~lgis~~tv~~Ri~~L~~~giI~~~~ 53 (63)
T d2cfxa1 6 IDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYT 53 (63)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEE
Confidence 456788888874 799999999999999999999999999999997654
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.01 E-value=0.0091 Score=45.22 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=40.5
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+..|+..|..+++|+|+.|||+.+|+++..+.+.|+-|...|++.+..
T Consensus 28 ~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 28 VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCEEEEE
Confidence 345566665444789999999999999999999999999999998664
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.99 E-value=0.068 Score=40.91 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=58.6
Q ss_pred eEEEecCCc-c-HHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCC-CCCcceEEEeccccccCChHHHHH
Q 018565 192 TLVDIGGND-G-TTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFD-GVPEADAAIIKWVLHDWGDDECIK 267 (354)
Q Consensus 192 ~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-~~~~~D~i~~~~~lh~~~~~~~~~ 267 (354)
+|+=||||. | .++..|.+..+..+++++|. ++.++.+++...+.....+... .....|+|+++- |.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 577899984 3 44556667777789999999 8888888764444333333333 233579988754 4567788
Q ss_pred HHHHHHHhcCCCCc
Q 018565 268 ILKNCKEAITKDKG 281 (354)
Q Consensus 268 ~L~~~~~~L~p~gG 281 (354)
++.++.+.+++ +.
T Consensus 78 vl~~l~~~~~~-~~ 90 (171)
T d2g5ca2 78 IAKKLSYILSE-DA 90 (171)
T ss_dssp HHHHHHHHSCT-TC
T ss_pred hhhhhhccccc-cc
Confidence 99999999988 54
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=94.94 E-value=0.008 Score=44.78 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=50.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRL 103 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l 103 (354)
.++.++..|... ++.|..+||+.+++++..+.++++-|+..|++++....++ .-.+.+|+.|+.+
T Consensus 35 ~q~~vL~~i~~~-~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~ 101 (136)
T d2bv6a1 35 PQFLVLTILWDE-SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETI 101 (136)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHH
Confidence 455667777665 6999999999999999999999999999999987653211 1246788887643
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=94.91 E-value=0.0093 Score=44.59 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=48.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
++-++..|...+++.|..+||+.+++++..+.+.++-|...|+++.....++ .-.+.+|+.|+.+..
T Consensus 33 ~~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~ 101 (140)
T d3deua1 33 HWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 101 (140)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHCCCHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHH
Confidence 3445555654335799999999999999999999999999999987652110 125889988864443
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=94.80 E-value=0.016 Score=41.23 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=60.8
Q ss_pred cccchHHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCC
Q 018565 12 KEEDDAKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQG 90 (354)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~ 90 (354)
+|..-+....++++.+-|...+|.. |.. |+....||...+ |+++.-|.+=|+.|...|++.+......
T Consensus 3 ~d~~c~i~~al~iig~kW~~~Il~~---------L~~--g~~RF~el~~~l~gIS~~~Ls~rLk~L~~~glv~R~~~~~~ 71 (108)
T d1z7ua1 3 TDKQTSINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNEL 71 (108)
T ss_dssp SCHHHHHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCcCCcHHHHHHHHcCCCHHHHHHH---------HHc--CCCCHHHHHHHCcCCChhHHHHHHHHHHHCCcceeeccCCC
Confidence 3334456667777777777776654 333 789999999997 7999999999999999999987642111
Q ss_pred C--ceEecCcccchhhc
Q 018565 91 S--MAFQQTPLSRRLMR 105 (354)
Q Consensus 91 ~--~~y~~t~~~~~l~~ 105 (354)
+ -.|.+|+.|+.|.+
T Consensus 72 p~~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 72 PPRVEYTLTPEGYALYD 88 (108)
T ss_dssp SCEEEEEECHHHHHHHH
T ss_pred cceehhhhchhHHHHHH
Confidence 1 13999999876665
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.76 E-value=0.021 Score=36.11 Aligned_cols=37 Identities=8% Similarity=0.044 Sum_probs=35.1
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+++++..+||+.+|+++.-+.+.++-|...|++...+
T Consensus 21 ~~~v~~~~iA~~L~vs~~SVt~mvkrL~~~Glv~~~~ 57 (63)
T d2isya1 21 GVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 57 (63)
T ss_dssp TCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCcHHHHHHHhCCCchhHHHHHHHHHHCCCEEEcC
Confidence 3789999999999999999999999999999999887
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=94.67 E-value=0.0079 Score=44.99 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=50.0
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
+.-++..|... ++.|+.+||+.+++++..+.+.++-|...|++++....++ .-.+.+|+.|+.+..
T Consensus 32 q~~iL~~i~~~-~~~t~~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~ 99 (139)
T d2a61a1 32 QFDILQKIYFE-GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 99 (139)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence 34455556543 6999999999999999999999999999999987752110 124888888875543
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.01 Score=44.29 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
.++.++..|... ++.|..+||+.+++++..+.++++.|...|++++....++ .-.+++|+.|+.+.
T Consensus 35 ~q~~vL~~l~~~-~~~t~~ela~~~~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 35 AQFKVLCSIRCA-ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHhHHhC-cCCCHHHHHHHHCCCHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence 345556666544 6999999999999999999999999999999987642111 12588888876544
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=94.56 E-value=0.014 Score=36.75 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=33.2
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
++++..+||+.+|+++.-+...++-|...|+++...
T Consensus 20 ~~v~~~~iA~~L~vs~~SVs~mikrL~~~GlV~~~~ 55 (61)
T d2ev0a1 20 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 55 (61)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCccHHHHHHHhCCCchhHHHHHHHHHHCCCEEEcc
Confidence 799999999999999999999999999999999875
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=94.44 E-value=0.019 Score=43.16 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=47.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc---eEecCcccchhh
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM---AFQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~~~~l~ 104 (354)
+-++..|... +++|..+||+.+++++..+.+.++-|...|++++....+ ++ ...+|+.|+.+.
T Consensus 32 ~~iL~~i~~~-~~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~~~-D~R~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 32 YLYLVRVCEN-PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS-NKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-CTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHCccHhhHHHHHHHHHhhhcccccCCCC-CCCccccccCHHHHHHH
Confidence 3344455554 589999999999999999999999999999998775321 22 477787776443
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.018 Score=37.56 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCCCCHHHHHhHcCC-CcccHHHHHHHHhccCceeecc
Q 018565 50 GSPITLNELASALKC-DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 50 ~~~~t~~elA~~~g~-~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|-|-|..|||+.+|+ ++..+.+.|+.|...|++++..
T Consensus 22 G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 22 GMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp SSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCeecCC
Confidence 469999999999999 6889999999999999999975
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=94.24 E-value=0.024 Score=36.56 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=47.5
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchhh
Q 018565 50 GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRLM 104 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~ 104 (354)
++|-|...|+++.+++=+.++|.|-.|.+.|+.+..=.++|.|.=++|+.++.++
T Consensus 22 g~~WSLaklsKra~~PMS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 22 ATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 76 (81)
T ss_dssp CCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCCccHHHHHhhcCCcHHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHH
Confidence 3688999999999999999999999999999998765555678899998887654
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=94.11 E-value=0.023 Score=37.23 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=38.4
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
++|-++||+.+|+++..+.|.|..|...|+++..+ +.+...+.
T Consensus 27 ~lt~~elA~~lg~sr~tvsr~l~~l~~~g~I~~~~-----~~i~I~d~ 69 (73)
T d1zyba1 27 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELHR-----KEILIPDA 69 (73)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEET-----TEEEESCG
T ss_pred ecCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC-----CEEEEccH
Confidence 67999999999999999999999999999999776 67766554
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.02 Score=33.97 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=47.6
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
+|-.|+..|.+.|+|+.+..|++++.++...+.++|..|-..+=+...++ +.|++
T Consensus 2 LEQkILQVL~dagspvk~~ql~k~cqVpkk~lNqVL~rlkke~kVsl~~p----atW~l 56 (57)
T d1j75a_ 2 LEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEP----ATWSI 56 (57)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEET----TEEEE
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHCCCHHHHHHHHHHHHhccccccCCC----ccccC
Confidence 35678888888789999999999999999999999999999998888773 66654
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.04 Score=33.51 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=39.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.|..|.. +...|+.+||.+++++...+.|.|..|...|-+.+.+
T Consensus 6 ~~l~~lg~-~~~~tA~~LA~kl~vpKk~iNr~LYsL~~kgkl~k~~ 50 (59)
T d2gxba1 6 KFLEELGE-GKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 50 (59)
T ss_dssp HHHHHHCT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHhcCC-ccchhHHHHHHHhCCcHHHHHHHHHHHHHccchhhcC
Confidence 44566654 3688999999999999999999999999999998876
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.88 E-value=0.029 Score=41.94 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC-CceEec
Q 018565 18 KVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG-SMAFQQ 96 (354)
Q Consensus 18 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~-~~~y~~ 96 (354)
..+.++++-+-|...+|+.+. . |+....||.+.+|+++..|.+-|+.|...|++++.....+ -..|++
T Consensus 10 v~~~l~ilg~kW~l~Il~~l~---------~--G~~rf~el~~~lgis~~vLs~rL~~L~~~gLv~r~~~~~p~r~~Y~L 78 (142)
T d2f2ea1 10 VARPLDVIGDGWSMLIVRDAF---------E--GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRL 78 (142)
T ss_dssp TTTTHHHHCSSSHHHHHHHHH---------T--TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHH---------c--CCCCHHHHHHHhhccHHHHHHHHHHHHHhcceeeecCCCCCeeEEec
Confidence 344566677777777776642 2 7999999999999999999999999999999987432111 124999
Q ss_pred Ccccchhhc
Q 018565 97 TPLSRRLMR 105 (354)
Q Consensus 97 t~~~~~l~~ 105 (354)
|+.|+.|.+
T Consensus 79 T~~G~~L~p 87 (142)
T d2f2ea1 79 TDKGRALFP 87 (142)
T ss_dssp CHHHHTTHH
T ss_pred CcCcchHHH
Confidence 998876654
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=93.85 E-value=0.013 Score=43.54 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=50.4
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
++.++..|... +++|..+||+.+++++..+.+.++-|+..|++.+....++ .-..++|+.|+.+..
T Consensus 35 q~~vL~~l~~~-~~~t~~~La~~~~i~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~ 102 (137)
T d1z91a1 35 QYLALLLLWEH-ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 102 (137)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCcCHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHH
Confidence 34455666543 6999999999999999999999999999999987753211 123889998875444
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.039 Score=35.45 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=39.5
Q ss_pred CCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
.++++.+|++++ +++..-+...++.|...|.+-..-. +.+|+.|.
T Consensus 22 eGi~~~el~~~l~~~~~~~i~~aid~L~~eG~IYsTiD---ddHfkstd 67 (69)
T d1dpua_ 22 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVD---DDHFKSTD 67 (69)
T ss_dssp TTEEHHHHHHHSTTSCHHHHHHHHHHHHHTTSEEECSS---TTEEEESS
T ss_pred cCcCHHHHHHHccCCCHHHHHHHHHHHHhCCceecccc---cchhcccC
Confidence 588999999999 7999999999999999999976653 58898775
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.70 E-value=0.011 Score=43.96 Aligned_cols=65 Identities=6% Similarity=0.050 Sum_probs=49.1
Q ss_pred HcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 39 ELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 39 ~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
++.++..|... ++.|+.+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.|+.+.
T Consensus 32 q~~vL~~l~~~-~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 98 (136)
T d2fbia1 32 QWRVIRILRQQ-GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 98 (136)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHH
Confidence 44556666654 6999999999999999999999999999999987752211 11377888776443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.67 E-value=0.29 Score=37.60 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=59.7
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhcccC-CCeEEeec--CCCC--------CCC-cceEEE
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKC-HGVEHVGG--DMFD--------GVP-EADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~--d~~~--------~~~-~~D~i~ 252 (354)
..++.+||-+|+| .|.++..+++..-..+++++|. ++-.+.+++. ....+-.. |+.+ .-+ ++|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5567899999987 4777888888764347899998 7777777652 21111111 1111 011 388877
Q ss_pred eccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 253 IKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 253 ~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-+- . .+ ..++.+.+.++| ||+++++...
T Consensus 106 d~v--G---~~---~~~~~a~~~l~~-~G~iv~~G~~ 133 (182)
T d1vj0a2 106 EAT--G---DS---RALLEGSELLRR-GGFYSVAGVA 133 (182)
T ss_dssp ECS--S---CT---THHHHHHHHEEE-EEEEEECCCC
T ss_pred ecC--C---ch---hHHHHHHHHhcC-CCEEEEEeec
Confidence 532 1 11 347788889999 9999887753
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=93.52 E-value=0.02 Score=41.09 Aligned_cols=77 Identities=14% Similarity=0.233 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCCC--ceE
Q 018565 18 KVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQGS--MAF 94 (354)
Q Consensus 18 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y 94 (354)
....++++.+-|...+|.. |.. |+....||...+ |+++..|.+-|+.|...|++++......+ -.|
T Consensus 14 v~~~l~~ig~kW~l~Il~~---------L~~--g~~RF~el~~~l~gis~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY 82 (114)
T d1yyva1 14 SREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEY 82 (114)
T ss_dssp HHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEE
T ss_pred HHHHHHHHcCCCHHHHHHH---------Hhc--CCCCHHHHHHHccccchhHHHHHHHHHHHHHHHhhcccCCCCchhHh
Confidence 5667788888887777654 223 789999999999 89999999999999999999877531111 239
Q ss_pred ecCcccchhhc
Q 018565 95 QQTPLSRRLMR 105 (354)
Q Consensus 95 ~~t~~~~~l~~ 105 (354)
.+|+.|+.|..
T Consensus 83 ~LT~~G~~L~~ 93 (114)
T d1yyva1 83 SLTPLGEQVSD 93 (114)
T ss_dssp EECHHHHHHHH
T ss_pred HhhHhHHHHHH
Confidence 99999886664
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.51 E-value=0.1 Score=41.05 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=66.8
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEee---cCCCCC------CCcceEEEecc
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVG---GDMFDG------VPEADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~d~~~~------~~~~D~i~~~~ 255 (354)
.+++.+||-+|||. |.++..+++.....+++++|. ++-++.+++..--.+.. .|+.+. -..+|+++-+.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 67888999999997 667777787777778999998 77778777622111211 111110 12378877532
Q ss_pred cc------cc-CChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 256 VL------HD-WGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 256 ~l------h~-~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
-. |. .........|+.+.++++| ||++.++-...++
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~-gG~v~~~G~~~~~ 145 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV-AGKIGIPGLYVTE 145 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE-EEEEEECSCCCSC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhc-CCEEEEeeecCCC
Confidence 10 10 1111124679999999999 9999998754443
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.16 Score=42.76 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=50.5
Q ss_pred cCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHhhhccc------CCCeEEeecCCCC-C-----CCcceEEE
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKA-FPRIRGINFDL-PHVVCVAEK------CHGVEHVGGDMFD-G-----VPEADAAI 252 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~-----~~~~D~i~ 252 (354)
..++.+|||+.+|.|.-+..++.. .+..+++.+|. +.-+..+++ ..++.+...|+.. + .+.||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 456789999999999999888865 45668899998 555555443 4778888888866 2 12489988
Q ss_pred ec
Q 018565 253 IK 254 (354)
Q Consensus 253 ~~ 254 (354)
+-
T Consensus 172 ~D 173 (293)
T d2b9ea1 172 LD 173 (293)
T ss_dssp EC
T ss_pred ec
Confidence 74
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=93.46 E-value=0.025 Score=41.37 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=48.2
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--eEecCcccc
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--AFQQTPLSR 101 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~~~ 101 (354)
.++-|+..|... ++++|+.|||+.+++++..+.+.++.|...|++.+....++.. ...+|+.|+
T Consensus 35 ~q~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~ 101 (125)
T d1p4xa1 35 KEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQR 101 (125)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHH
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHhCCCcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHH
Confidence 345556666432 2579999999999999999999999999999998886321111 377777775
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=93.41 E-value=0.022 Score=39.98 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHcChhhhhhhCCCCCCHHHHHhHc-CCCcccHHHHHHHHhccCceeeccCCCCC--ce
Q 018565 17 AKVEIWKYVFGFTNMAVVKCAVELGIAEAVEEKGSPITLNELASAL-KCDPSLLQRIMRFLIHLKFFKEVPTSQGS--MA 93 (354)
Q Consensus 17 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~-g~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~ 93 (354)
+....++++.+=|...+|... .. |+....||.+.+ |+++.-|.+-|+-|...|++.+......+ -.
T Consensus 9 pv~~~l~ilg~kW~l~Il~~L---------~~--g~~rF~el~~~l~gIs~~~Ls~rLkeL~~~glv~r~~~~~~p~~ve 77 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQI---------NR--RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVE 77 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHHH---------TT--SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEE
T ss_pred CHHHHHHHHcCCCHHHHHHHH---------cc--CCCCHHHHHhhCcccchhHHHHHHHHHHHCCceeecccCCCCCeeh
Confidence 356677777777877776542 22 789999999997 89999999999999999999876421111 13
Q ss_pred EecCcccchhhc
Q 018565 94 FQQTPLSRRLMR 105 (354)
Q Consensus 94 y~~t~~~~~l~~ 105 (354)
|++|+.|+.|.+
T Consensus 78 Y~LT~~G~~L~p 89 (102)
T d2fswa1 78 YSLTPLGEKVLP 89 (102)
T ss_dssp EEECHHHHTTHH
T ss_pred hhhhHhHHHHHH
Confidence 999999876654
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=93.32 E-value=0.021 Score=41.04 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=47.4
Q ss_pred cChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchh
Q 018565 40 LGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRL 103 (354)
Q Consensus 40 lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l 103 (354)
+.++..|... +++.|..+||+.+++++..+.++++-|...|++.+....++ .-...+|+.|+.+
T Consensus 35 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~ 101 (115)
T d1hsja1 35 IYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKAN 101 (115)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHH
T ss_pred HHHHHHHHccCCCCcCHHHHHHHHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHH
Confidence 4455555421 26899999999999999999999999999999987753211 1137788777543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.082 Score=40.46 Aligned_cols=93 Identities=13% Similarity=-0.024 Sum_probs=58.1
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC---C-CCcceEEEeccc-cc
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD---G-VPEADAAIIKWV-LH 258 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~---~-~~~~D~i~~~~~-lh 258 (354)
..++.+||-+|+| .|.++..+++. .+.+++++|. ++-++.+++ .....+...+-.+ . ...+|+++.+-. .+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~-~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKA-MGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhh-ccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6678899999988 66777777775 4689999998 666777765 2221121111111 1 234898765422 22
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 259 DWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 259 ~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
.. .+....+.++| +|+++++..
T Consensus 104 ~~-------~~~~~~~~l~~-~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKV-GGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEE-EEEEEECCC
T ss_pred cc-------hHHHHHHHhhc-cceEEEecc
Confidence 11 13456778999 999998763
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=93.05 E-value=0.026 Score=41.23 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHcChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCc--eEecCcccch
Q 018565 38 VELGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSM--AFQQTPLSRR 102 (354)
Q Consensus 38 ~~lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~~~~ 102 (354)
.++-|+..|... ++++|+.+||+.+++++..+.+.++-|...|++++....++.. ...+|+.|+.
T Consensus 34 ~q~~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~ 101 (125)
T d1p4xa2 34 VEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQD 101 (125)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHH
T ss_pred HHHHHHHHHHHccCCCccHHHHHHHHCCCcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHH
Confidence 344566667432 2578999999999999999999999999999998775322111 3777777653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.98 E-value=0.29 Score=37.38 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=60.9
Q ss_pred HhcCCCccCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecC---CCCC----CC-cce
Q 018565 180 IEGCPEVFDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGD---MFDG----VP-EAD 249 (354)
Q Consensus 180 ~~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d---~~~~----~~-~~D 249 (354)
.+... .++..+||=+|||. |.++..+++.....++++.|. ++-++.+++..-.+++..+ +.+. .+ .+|
T Consensus 21 ~~~~~--~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 21 INALK--VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp HTTTC--CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred HHhhC--CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 44444 66788899999874 455666777766667778887 7667777652212232221 1111 12 388
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 250 AAIIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 250 ~i~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+++-+-- . ...++.+.+.++| +|+++++..
T Consensus 99 ~vid~~G-----~---~~~~~~~~~~~~~-~G~i~~~G~ 128 (174)
T d1f8fa2 99 FALESTG-----S---PEILKQGVDALGI-LGKIAVVGA 128 (174)
T ss_dssp EEEECSC-----C---HHHHHHHHHTEEE-EEEEEECCC
T ss_pred EEEEcCC-----c---HHHHHHHHhcccC-ceEEEEEee
Confidence 8775421 1 2567788889999 999998754
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.78 E-value=0.14 Score=38.95 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=59.9
Q ss_pred cCCCceEEEecC-C-ccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecC---CCCC-----CC-cceEEEe
Q 018565 187 FDGIETLVDIGG-N-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGD---MFDG-----VP-EADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d---~~~~-----~~-~~D~i~~ 253 (354)
..+..+||=+|| | .|..+..+++.....++++.+. ++-.+.+++ ... .++..+ +.+. .+ .+|+++-
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 667789999996 3 5666777777766678888987 666666665 221 222222 1111 12 3888877
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+.. . ...++.+.++++| +|+++++...
T Consensus 104 ~~g-----~---~~~~~~a~~~l~~-~G~iv~~G~~ 130 (170)
T d1jvba2 104 LNN-----S---EKTLSVYPKALAK-QGKYVMVGLF 130 (170)
T ss_dssp SCC-----C---HHHHTTGGGGEEE-EEEEEECCSS
T ss_pred ccc-----c---chHHHhhhhhccc-CCEEEEeccc
Confidence 542 1 2456778889999 9999988643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.70 E-value=0.27 Score=37.09 Aligned_cols=84 Identities=10% Similarity=0.020 Sum_probs=53.8
Q ss_pred eEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccccCChHHHHHH
Q 018565 192 TLVDIGGN--DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLHDWGDDECIKI 268 (354)
Q Consensus 192 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh~~~~~~~~~~ 268 (354)
+|.=||+| -+.++..|.++ +.+++++|. ++..+.+++...+... .+..+...+.|+|+++- |.....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIilav-----p~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLCT-----PIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEECS-----CHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhcccee-eeecccccccccccccC-----cHhhhhhh
Confidence 56667776 22344455444 678999998 7777776653333222 22223455789988743 56778899
Q ss_pred HHHHHHhcCCCCceEEE
Q 018565 269 LKNCKEAITKDKGKVII 285 (354)
Q Consensus 269 L~~~~~~L~p~gG~lli 285 (354)
++++...++| + .+++
T Consensus 74 l~~l~~~l~~-~-~iv~ 88 (165)
T d2f1ka2 74 LEKLIPHLSP-T-AIVT 88 (165)
T ss_dssp HHHHGGGSCT-T-CEEE
T ss_pred hhhhhhhccc-c-ccee
Confidence 9999999988 4 4444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.64 E-value=1.1 Score=33.57 Aligned_cols=93 Identities=16% Similarity=0.038 Sum_probs=60.7
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCCC-----------CC-cceEE
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFDG-----------VP-EADAA 251 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~-----------~~-~~D~i 251 (354)
..++.+||-+||| .|.++..+++.. +.+++++|. ++-.+.+++ .....+...+...+ .+ .+|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5567889999988 566677777765 579999998 777777765 22333322211111 12 37887
Q ss_pred EeccccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 252 IIKWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 252 ~~~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
+-+-- . ...+..+.+.++| +|+++++...
T Consensus 103 id~~g-----~---~~~~~~a~~~~~~-~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG-----N---EKCITIGINITRT-GGTLMLVGMG 131 (170)
T ss_dssp EECSC-----C---HHHHHHHHHHSCT-TCEEEECSCC
T ss_pred eecCC-----C---hHHHHHHHHHHhc-CCceEEEecC
Confidence 65431 1 2457788889999 9999987643
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=92.64 E-value=0.023 Score=43.56 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=48.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhh
Q 018565 40 LGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLM 104 (354)
Q Consensus 40 lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~ 104 (354)
..|+..|... +++|+.+||+.+++++..+.++++-|...|++++....++ .-.+.+|+.|+.+.
T Consensus 44 ~~vL~~l~~~-~~~t~~~la~~~~l~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 109 (162)
T d2fxaa1 44 HHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 109 (162)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHhhhccC-CCcCHHHHHHHHcCCchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence 4466666554 6899999999999999999999999999999997753211 11478888876433
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=92.36 E-value=0.031 Score=40.11 Aligned_cols=63 Identities=10% Similarity=0.253 Sum_probs=47.2
Q ss_pred cChhhhhhhC-CCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccch
Q 018565 40 LGIAEAVEEK-GSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRR 102 (354)
Q Consensus 40 lglf~~L~~~-~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~ 102 (354)
+.++..|... ++++|..+||+.+++++..+.+.++.|...|++.+....++ .-.+.+|+.|+.
T Consensus 36 ~~vL~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~ 101 (115)
T d2frha1 36 FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRK 101 (115)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHH
Confidence 3444455432 25689999999999999999999999999999988863211 224788888753
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=92.30 E-value=0.072 Score=35.32 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=37.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
-|.|-++||..+|+++..+.|.|..|...|+++..+ +.+...+
T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~-----~~i~I~d 70 (81)
T d2gaua1 28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDG-----KRIKIID 70 (81)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEET-----TEEEESC
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC-----CEEEEcC
Confidence 378999999999999999999999999999999877 5665543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.18 E-value=0.71 Score=35.16 Aligned_cols=93 Identities=16% Similarity=0.010 Sum_probs=61.7
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEee---cCCC-CC------CCcceEEEec
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVG---GDMF-DG------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~d~~-~~------~~~~D~i~~~ 254 (354)
.+++.+||=+|||. |.++..+++..-..++++.|. ++-.+.+++..--.++. .|-. .. ...+|+++-+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 66788999999987 788888888876667888898 66667776622222221 1111 00 1247887654
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCC-ceEEEEee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDK-GKVIIVEA 288 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~g-G~lli~e~ 288 (354)
-- . ...+....+.++| | |+++++-.
T Consensus 106 ~G-----~---~~~~~~a~~~~~~-g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG-----T---AQTLKAAVDCTVL-GWGSCTVVGA 131 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCT-TTCEEEECCC
T ss_pred cc-----c---chHHHHHHHHhhc-CCeEEEecCC
Confidence 31 2 2568888999998 8 89988764
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.83 E-value=0.069 Score=34.26 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=33.6
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
|+|-++||..+|++...+.|.|+-|...|+++..+
T Consensus 29 ~lt~~~lA~~~G~sRetvsr~L~~l~~~glI~~~~ 63 (69)
T d1i5za1 29 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 63 (69)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 68999999999999999999999999999999876
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.37 E-value=0.048 Score=42.13 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred HcChhhhhhhCC--CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCC--CceEecCcccchhhc
Q 018565 39 ELGIAEAVEEKG--SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQG--SMAFQQTPLSRRLMR 105 (354)
Q Consensus 39 ~lglf~~L~~~~--~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~~~~l~~ 105 (354)
++.|+..|...+ +++|..+||+.+++++..+.++++-|...|++++.....+ .-.+++|+.|+.+..
T Consensus 64 q~~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~ 134 (172)
T d2fbka1 64 GWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 134 (172)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcCHHHHHHHHCcCHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHH
Confidence 345555564322 3489999999999999999999999999999998862111 113678877764443
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.06 E-value=0.053 Score=36.36 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=39.0
Q ss_pred ChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 41 GIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 41 glf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|++.|.+.++.+|=++||+++|+....+++.|..|...|++....
T Consensus 22 ~v~~~L~~~~~evtDe~iA~~tgi~in~VRk~Ly~L~~~~L~~y~R 67 (88)
T d1q1ha_ 22 DVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRK 67 (88)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHhccCcCCHHHHHHHhCCcHHHHHHHHHHHHhCCceEEEE
Confidence 4677665323589999999999999999999999999999997664
|
| >d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MerB N-terminal domain-like domain: Alkylmercury lyase MerB species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.052 Score=33.06 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=31.1
Q ss_pred hhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhcc
Q 018565 42 IAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHL 79 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~ 79 (354)
++..|++ |.|+|++.||..+|.+.+.+...|..+.+.
T Consensus 7 LLr~LA~-G~PVs~~~LA~alg~~~~eV~~aL~~~p~t 43 (60)
T d1s6la1 7 LLRELAK-GRPVSRTTLAGILDWPAERVAAVLEQATST 43 (60)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHTTCCSS
T ss_pred HHHHHhC-CCCcCHHHHHHHhCCCHHHHHHHHHhCCCc
Confidence 4567777 589999999999999999999888877743
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=90.73 E-value=0.11 Score=42.53 Aligned_cols=66 Identities=12% Similarity=0.185 Sum_probs=47.8
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHhhhcc-------c--------CCCeEEeecCCCC---C-CCcce
Q 018565 190 IETLVDIGGNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAE-------K--------CHGVEHVGGDMFD---G-VPEAD 249 (354)
Q Consensus 190 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~~v~~~~~d~~~---~-~~~~D 249 (354)
..+|||.-||.|..+..++.. +.++++++. |.+....+ . ..|++++.+|..+ . .+.||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 348999999999999999987 578999998 54433222 1 2489999998655 2 23489
Q ss_pred EEEecccc
Q 018565 250 AAIIKWVL 257 (354)
Q Consensus 250 ~i~~~~~l 257 (354)
+|++--.+
T Consensus 167 vIYlDPMF 174 (250)
T d2oyra1 167 VVYLDPMF 174 (250)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 88875444
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.11 Score=33.45 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=49.0
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcCCCcc-cHHHHHHHHhccCceeeccCCCCCceEecCccc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALKCDPS-LLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLS 100 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~ 100 (354)
.+..|.+.|... +|.|+-.||..+|++.. -+-+.|..|...|-+.+.+.. +..|.++...
T Consensus 6 ~eekI~~~L~~~-g~~~Al~iak~lGl~kakeVN~~LY~L~k~g~v~k~~~t--PP~W~L~~~~ 66 (73)
T d1xmka1 6 IKEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTT--PPIWHLTDKK 66 (73)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSS--SCEEEECHHH
T ss_pred HHHHHHHHHHHc-CCchHHHHHHHhCCCcHHHHhHHHHHHHHCCCeecCCCC--CCceeeecch
Confidence 456788888775 79999999999999984 699999999999999887632 4578887644
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=90.41 E-value=0.29 Score=31.15 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=40.9
Q ss_pred HHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccC
Q 018565 32 AVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 32 ~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
..|+..+..|-|.- |..++..+||+.+|++..-+++-|+.|...|+++....
T Consensus 9 ~~l~~~I~~g~~~~----G~~l~~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~ 60 (69)
T d2hs5a1 9 GILRDAIIDGTFRP----GARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 60 (69)
T ss_dssp HHHHHHHHHTSSCT----TCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHcCCCCC----cCccCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 34455555555432 35668999999999999999999999999999998873
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.29 E-value=0.19 Score=38.60 Aligned_cols=94 Identities=17% Similarity=0.068 Sum_probs=59.8
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEe---ecCCCCC----CC--cceEEEecc
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHV---GGDMFDG----VP--EADAAIIKW 255 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~---~~d~~~~----~~--~~D~i~~~~ 255 (354)
..++.+||=+|||. |.++..+++..-..+++++|. ++-.+.+++..-..++ ..++.+. .+ .+|+++-+-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 56778888899986 777888888654447899998 6667766651111122 1111111 11 389876643
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 256 VLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 256 ~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
-- + ..+..+.+.++| +|+++++...
T Consensus 105 g~-----~---~~~~~a~~~~~~-~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG-----S---ETLSQAVKMVKP-GGIISNINYH 129 (174)
T ss_dssp SC-----T---THHHHHHHHEEE-EEEEEECCCC
T ss_pred CC-----H---HHHHHHHHHHhc-CCEEEEEeec
Confidence 21 1 346777889999 9999997643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=1 Score=33.91 Aligned_cols=95 Identities=11% Similarity=-0.057 Sum_probs=60.3
Q ss_pred cCCCceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC----------CC-cceEEEe
Q 018565 187 FDGIETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG----------VP-EADAAII 253 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~----------~~-~~D~i~~ 253 (354)
..+..+|+=+|||.. .++..+++.....++++.|. ++-++.+++..--.+...+-.++ .+ .+|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 556788999998754 55556666655447999998 77777777621111222111110 12 4788776
Q ss_pred ccccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 254 KWVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 254 ~~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
+.- . ...++.+.+.++| ||+++++....
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~-gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRS-GGTLVLVGLGS 131 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCT-TCEEEECSCCC
T ss_pred ccC-----C---chhHHHHHHHhcC-CCEEEEEecCC
Confidence 432 2 2468888999999 99999987543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.1 Score=39.85 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=56.5
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCC----CCCcceEEEecccccc
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFD----GVPEADAAIIKWVLHD 259 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~----~~~~~D~i~~~~~lh~ 259 (354)
..++.+||=+|+| .|.++..+++.. +.+.+++|. ++-.+.+++ ... .++..+-.. ....+|+++-.---
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad-~~i~~~~~~~~~~~~~~~D~vid~~g~-- 103 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGAD-EVVNSRNADEMAAHLKSFDFILNTVAA-- 103 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCS-EEEETTCHHHHHTTTTCEEEEEECCSS--
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCc-EEEECchhhHHHHhcCCCceeeeeeec--
Confidence 6678888889976 467777788875 667777877 555566555 221 122111111 12358987764321
Q ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 260 WGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 260 ~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
+ ..+....+.++| +|+++++-.
T Consensus 104 ---~---~~~~~~~~~l~~-~G~iv~~G~ 125 (168)
T d1uufa2 104 ---P---HNLDDFTTLLKR-DGTMTLVGA 125 (168)
T ss_dssp ---C---CCHHHHHTTEEE-EEEEEECCC
T ss_pred ---c---hhHHHHHHHHhc-CCEEEEecc
Confidence 1 235677789999 999998754
|
| >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Chlorophenol reduction protein CprK species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=90.11 E-value=0.11 Score=34.28 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
-|+|-++||..+|+++..+.+.|..|...|+++..+ +.+....
T Consensus 29 ~~lt~~elA~~~g~sretvsr~l~~l~~~glI~~~~-----~~i~I~d 71 (80)
T d3e5ua1 29 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-----NKIIVYN 71 (80)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CEESC
T ss_pred eCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC-----CEEEEcC
Confidence 488999999999999999999999999999998776 5554443
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.08 E-value=0.14 Score=34.50 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=33.9
Q ss_pred CCCCCHHHHHhHcCC--CcccHHHHHHHHhccCceeeccC
Q 018565 50 GSPITLNELASALKC--DPSLLQRIMRFLIHLKFFKEVPT 87 (354)
Q Consensus 50 ~~~~t~~elA~~~g~--~~~~l~~lL~~L~~~g~l~~~~~ 87 (354)
|.|++..+||+..|+ ++.-++..|..|...|+|+....
T Consensus 21 g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~ 60 (87)
T d1stza1 21 KKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 60 (87)
T ss_dssp CSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred CCccCHHHHHHHhCCCCCHHHHHHHHHHHHHCCcccCCCC
Confidence 479999999999766 68999999999999999998754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.99 E-value=0.31 Score=36.80 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=55.9
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-------CCcceEEEecccc
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-------VPEADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~~l 257 (354)
.++..+||=+|+|. |..+..+++.. +.+++++|. ++-++.+++..--.++..+-.+. .+++|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 55677888899874 55566677765 589999998 77777776622222222211111 123444433221
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
. ...+....+.|+| +|+++++-
T Consensus 103 ---~----~~~~~~~~~~l~~-~G~iv~~G 124 (166)
T d1llua2 103 ---S----NSAFGQAIGMARR-GGTIALVG 124 (166)
T ss_dssp ---C----HHHHHHHHTTEEE-EEEEEECC
T ss_pred ---c----chHHHHHHHHhcC-CcEEEEEE
Confidence 1 1457788899999 99999875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.84 E-value=2 Score=32.54 Aligned_cols=95 Identities=14% Similarity=-0.031 Sum_probs=57.2
Q ss_pred cCCCceEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHhhhccc-CCCeEEeecCCCCC--------C-CcceEEEec
Q 018565 187 FDGIETLVDIGGND-GTTLRTLTKAFPRIRGINFDL-PHVVCVAEK-CHGVEHVGGDMFDG--------V-PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~~--------~-~~~D~i~~~ 254 (354)
.+++.+|+=+|+|. |.++..+++..-..+++++|. ++-++.+++ .....+-..|.... . ..+|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 66788999999875 455667777766678999998 888888887 22222211121111 1 247876654
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAI 289 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~ 289 (354)
.- .. ..+......+.+.+|+++++-..
T Consensus 107 ~g-----~~---~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 107 IG-----HL---ETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp SC-----CH---HHHHHHHTTSCTTTCEEEECSCC
T ss_pred CC-----ch---HHHHHHHHHhhcCCeEEEEEEcc
Confidence 32 11 33445555554415888887654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.23 Score=37.90 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=58.1
Q ss_pred cCCCceEEEecC--CccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEe---ecCCCCC------CCcceEEEec
Q 018565 187 FDGIETLVDIGG--NDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHV---GGDMFDG------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~---~~d~~~~------~~~~D~i~~~ 254 (354)
+.++.+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++ ..|+.+. ...+|+|+.+
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 667889999985 5777888888775 578887775 6666666652111122 1222211 1238988864
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEe
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVE 287 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e 287 (354)
. . ...+....++|+| +|+++.+.
T Consensus 105 ~------g---~~~~~~~~~~l~~-~G~iv~~G 127 (174)
T d1yb5a2 105 L------A---NVNLSKDLSLLSH-GGRVIVVG 127 (174)
T ss_dssp C------H---HHHHHHHHHHEEE-EEEEEECC
T ss_pred c------c---HHHHHHHHhccCC-CCEEEEEe
Confidence 3 1 1457788899999 99999874
|
| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: CO-sensing protein CooA, C-terminal domain species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.57 E-value=0.18 Score=33.17 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=37.6
Q ss_pred CCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 52 PITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 52 ~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
|.|-++||..+|+++..+.|.|..|...|+++..+. +.+....
T Consensus 30 ~~t~~eiA~~lG~sretvsr~l~~l~~~g~I~~~~~----~~i~I~d 72 (80)
T d1ft9a1 30 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGR----GHYTIPN 72 (80)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECST----TCEECSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCC----CeEEECC
Confidence 889999999999999999999999999999998752 5565544
|
| >d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PH0730 N-terminal domain-like domain: Hypothetical protein PH0730 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.10 E-value=0.13 Score=32.74 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=40.8
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccchh
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSRRL 103 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~~l 103 (354)
.|+.-..||+.+|+.++.++..++.|...|+++... ..-.+|+.++.+
T Consensus 16 qPiGRr~La~~L~l~Er~vRte~~~Lk~~gLI~~~~-----~Gm~lTe~G~~~ 63 (69)
T d2p8ta1 16 EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ-----RGHFLTLKGKEI 63 (69)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHH
T ss_pred CCccHHHHHHHcCCcHHHHHHHHHHHHHCCCeeeeC-----CCCEECHhHHHH
Confidence 599999999999999999999999999999999987 345578777533
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.02 E-value=0.5 Score=35.47 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=54.3
Q ss_pred cCCCceEEEecCCccHH-HHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeec---CCCCC----CCcceEEEecccc
Q 018565 187 FDGIETLVDIGGNDGTT-LRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGG---DMFDG----VPEADAAIIKWVL 257 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---d~~~~----~~~~D~i~~~~~l 257 (354)
..+..+||=.|+|.-.. +..+++. .+.++++++. ++-++.+++..--.+... |+... .++.|.++....
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV- 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence 55678888899876544 4455554 5668888887 766766665221111111 11110 123444443322
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 258 HDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 258 h~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
. ...+....++++| +|+++++..
T Consensus 103 ---~----~~~~~~a~~~l~~-~G~i~~~g~ 125 (168)
T d1rjwa2 103 ---S----KPAFQSAYNSIRR-GGACVLVGL 125 (168)
T ss_dssp ---C----HHHHHHHHHHEEE-EEEEEECCC
T ss_pred ---C----HHHHHHHHHHhcc-CCceEeccc
Confidence 1 2457888999999 999998753
|
| >d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Putative arsenical resistance operon repressor AF0168 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.45 E-value=0.24 Score=31.67 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=51.4
Q ss_pred HHHHHHHHHcChhhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEecCcccc
Q 018565 31 MAVVKCAVELGIAEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPLSR 101 (354)
Q Consensus 31 ~~~l~~a~~lglf~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~~~ 101 (354)
..++.-.++-.++.-|. .+.+-+||-+.++++...+...|..|..-=.+++.+ +.|+.|..++
T Consensus 25 ~~av~nPvRrkiLrmi~---kgrsedEIm~~l~LSkkqldYHLk~LE~GfciErvg-----e~w~~T~~G~ 87 (89)
T d1y0ua_ 25 NYAVTNPVRRKILRMLD---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-----ERWVVTDAGK 87 (89)
T ss_dssp HHHHSCHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-----TEEEECTTTC
T ss_pred HHHHhhHHHHHHHHHHH---ccCCHHHHHHHhccCHHHHHHHHHHHHccceeEecC-----Cceeeccccc
Confidence 34566667788888887 489999999999999999999999998755556665 8999998775
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.44 E-value=3 Score=31.20 Aligned_cols=97 Identities=13% Similarity=-0.008 Sum_probs=58.9
Q ss_pred cCCCceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEee-cCCCCC---------CCcceEEEec
Q 018565 187 FDGIETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVG-GDMFDG---------VPEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~d~~~~---------~~~~D~i~~~ 254 (354)
.+++.+||=+|+|.+ ..+..+++..-..++++.|. ++-.+.+++......+. .+-.+. ...+|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 667889999988644 55666777777778999998 66677666532222222 121111 1248988775
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeeeCC
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAIIEE 292 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~ 292 (354)
.-.. ..++.+...+++ +|..+++-...+.
T Consensus 106 ~G~~--------~~~~~a~~~~~~-~~g~~~~~~~~~~ 134 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQE-AYGVSVIVGVPPD 134 (176)
T ss_dssp SCCH--------HHHHHHHHHBCT-TTCEEEECSCCCT
T ss_pred CCch--------hHHHHHHHHHhc-CCcceEEecCCCC
Confidence 4322 345667778887 7655555444333
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.36 E-value=0.74 Score=32.94 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=53.4
Q ss_pred CCccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-------CCcceEEEeccccccCChHHHHHHH
Q 018565 198 GNDGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-------VPEADAAIIKWVLHDWGDDECIKIL 269 (354)
Q Consensus 198 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~~lh~~~~~~~~~~L 269 (354)
||.|..+..+++...+..++++|. ++..+... ...+.++.||..++ +.+++.+++.. . ++.....+.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~--~d~~n~~~~ 80 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL--E--SDSETIHCI 80 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC--S--SHHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec--c--chhhhHHHH
Confidence 567888999998877777888887 66666655 35688999999873 33577776632 1 244444444
Q ss_pred HHHHHhcCCCCceEEE
Q 018565 270 KNCKEAITKDKGKVII 285 (354)
Q Consensus 270 ~~~~~~L~p~gG~lli 285 (354)
.. .+.+.| ..+++.
T Consensus 81 ~~-~r~~~~-~~~iia 94 (129)
T d2fy8a1 81 LG-IRKIDE-SVRIIA 94 (129)
T ss_dssp HH-HHHHCS-SSCEEE
T ss_pred HH-HHHHCC-CceEEE
Confidence 44 455677 666554
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=88.09 E-value=0.16 Score=32.12 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=37.7
Q ss_pred hhhhhhCCCCCCHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 43 AEAVEEKGSPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 43 f~~L~~~~~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.+.|.. +...|+.+||.++|++..-+-|.|--|...|.+.+.+
T Consensus 16 l~~L~~-~~~~tA~~LAk~Lg~~Kk~VNr~LY~L~~~G~v~~~~ 58 (70)
T d1sfua_ 16 VLSLNT-NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVP 58 (70)
T ss_dssp HHTSCT-TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhcCC-CCCchHHHHHHHhCCCHHHHHHHHHHHHHCCCeecCC
Confidence 345554 3688999999999999999999999999999998887
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.84 E-value=1.4 Score=33.17 Aligned_cols=93 Identities=14% Similarity=0.038 Sum_probs=58.5
Q ss_pred cCCCceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeecC--CCCC-----CC-cceEEEeccc
Q 018565 187 FDGIETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGGD--MFDG-----VP-EADAAIIKWV 256 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d--~~~~-----~~-~~D~i~~~~~ 256 (354)
..+..+||-+|+|.. ..+..+++..-..++++.|. ++-.+.+++..-..++..+ ..+. -+ .+|+++-+.-
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 356788999998754 45566777666667888888 6666666653222333221 1110 11 3787765432
Q ss_pred cccCChHHHHHHHHHHHHhcCCCCceEEEEee
Q 018565 257 LHDWGDDECIKILKNCKEAITKDKGKVIIVEA 288 (354)
Q Consensus 257 lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~ 288 (354)
. ...+....+.+++ +|+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~-~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGR-MGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEE-EEEEEECCC
T ss_pred -----c---chHHHHHHHHHhC-CCEEEEEeC
Confidence 1 2457888899999 999998763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.64 E-value=1.4 Score=31.59 Aligned_cols=84 Identities=19% Similarity=0.128 Sum_probs=53.2
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-------CCcceEEEeccccccCC
Q 018565 192 TLVDIGGNDGTTLRTLTKAF--PRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-------VPEADAAIIKWVLHDWG 261 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~~lh~~~ 261 (354)
+|+=+|+ |.++..+++.. .+..++++|. ++.++.+.+...+.++.||..++ ...+|.+++.- +
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t-----~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT-----G 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC-----C
Confidence 5666665 66666666533 3678999998 88777765434678899999873 23578777631 2
Q ss_pred hHHHHHHHHHHHHhcCCCCceEE
Q 018565 262 DDECIKILKNCKEAITKDKGKVI 284 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~ll 284 (354)
+++...+.....+.+.+ . +++
T Consensus 75 ~d~~N~~~~~~~k~~~~-~-~iI 95 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGI-N-KTI 95 (132)
T ss_dssp CHHHHHHHHHHHHHTTC-C-CEE
T ss_pred cHHHHHHHHHHHHHcCC-c-eEE
Confidence 33333445556667777 5 443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.60 E-value=0.55 Score=35.72 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=50.9
Q ss_pred ceEEEecCCccHHHHH--HHHHCCCCeEEEeec-hHHhhhccc-------CCCeEEeec------CCCCCCCcceEEEec
Q 018565 191 ETLVDIGGNDGTTLRT--LTKAFPRIRGINFDL-PHVVCVAEK-------CHGVEHVGG------DMFDGVPEADAAIIK 254 (354)
Q Consensus 191 ~~vLDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~------d~~~~~~~~D~i~~~ 254 (354)
++|.=||+|.-..+.. |.++ +.+++++|. ++.++..+. .+....... |..+..+++|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 5778889986544433 3333 678999998 666665543 111111111 111113568998875
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceE
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKV 283 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~l 283 (354)
- +......+++.+...+++ +..+
T Consensus 80 v-----~~~~~~~~~~~i~~~l~~-~~~i 102 (184)
T d1bg6a2 80 V-----PAIHHASIAANIASYISE-GQLI 102 (184)
T ss_dssp S-----CGGGHHHHHHHHGGGCCT-TCEE
T ss_pred E-----chhHHHHHHHHhhhccCC-CCEE
Confidence 3 344567889999999998 6543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=86.52 E-value=1 Score=38.69 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.3
Q ss_pred cCCCceEEEecCCccHHHHHHHHHC-------CCCeEEEeech
Q 018565 187 FDGIETLVDIGGNDGTTLRTLTKAF-------PRIRGINFDLP 222 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~ 222 (354)
.++..+|||+|+|+|.++..+++.. ..+++..++..
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s 119 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEIN 119 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCC
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccc
Confidence 3456789999999999998887643 23457888873
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.46 E-value=0.57 Score=30.17 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=33.8
Q ss_pred CCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeecc
Q 018565 51 SPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
..+ +..+||+.+|++..-+++-++.|...|++....
T Consensus 25 ~~LPs~~eLa~~~~vSr~tvr~Al~~L~~~G~i~~~~ 61 (74)
T d1hw1a1 25 TILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 61 (74)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEe
Confidence 567 899999999999999999999999999999887
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=86.07 E-value=0.52 Score=30.67 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=37.0
Q ss_pred CCC-CHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEec
Q 018565 51 SPI-TLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQ 96 (354)
Q Consensus 51 ~~~-t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~ 96 (354)
..+ |..+||+.+|++..-+++-|+.|...|++..... .|.|..
T Consensus 20 ~~LPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g---~G~~V~ 63 (78)
T d3bwga1 20 DKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG---SGIFVR 63 (78)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT---TEEEEC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC---cEEEEc
Confidence 566 8999999999999999999999999999998863 355543
|
| >d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Cell cycle transcription factor e2f-dp domain: Cell cycle transcription factor E2F-4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.02 E-value=0.28 Score=30.97 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCCCHHHHHhHcCC-CcccHHHHHHHHhccCceeecc
Q 018565 51 SPITLNELASALKC-DPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 51 ~~~t~~elA~~~g~-~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
+.+++.+.|+.+++ ..+++..+..+|.++|++++..
T Consensus 24 ~~~~L~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~ 60 (67)
T d1cf7a_ 24 GVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 60 (67)
T ss_dssp TEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEE
T ss_pred CeeeHHHHHHHhcCcchhhHHHHHHHHhhhhhhhccc
Confidence 67799999999999 5799999999999999999987
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=85.99 E-value=4.1 Score=30.49 Aligned_cols=96 Identities=15% Similarity=-0.065 Sum_probs=58.4
Q ss_pred cCCCceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEe---ecCCCC-C-----C-CcceEEEec
Q 018565 187 FDGIETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHV---GGDMFD-G-----V-PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~---~~d~~~-~-----~-~~~D~i~~~ 254 (354)
.++..+||=+|||.. .++..+++.....++++.|. ++-++.+++..-..++ ..|... . . ..+|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 667889999998854 55556777666678999998 7777777762222222 222111 0 1 237877654
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
-- . ...+......+++.+|+++++-...
T Consensus 105 ~g-----~---~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 105 AG-----R---IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred CC-----C---chHHHHHHHHHHHhcCceEEEEEec
Confidence 32 1 2456666666654158888877543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.48 E-value=4 Score=30.30 Aligned_cols=95 Identities=17% Similarity=0.080 Sum_probs=57.7
Q ss_pred cCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHhhhcccCCCeEEeec-CCCCC--------C-CcceEEEec
Q 018565 187 FDGIETLVDIGGN-DGTTLRTLTKAFPRIRGINFDL-PHVVCVAEKCHGVEHVGG-DMFDG--------V-PEADAAIIK 254 (354)
Q Consensus 187 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-d~~~~--------~-~~~D~i~~~ 254 (354)
.+++.+||=+||| .|.++..+++..-..++++.|. ++-.+.+++..--.++.. +-.++ . ..+|+++-+
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 6678889988876 4466667777765567888887 666777765111112211 11111 1 248888764
Q ss_pred cccccCChHHHHHHHHHHHHhcCCCCceEEEEeeee
Q 018565 255 WVLHDWGDDECIKILKNCKEAITKDKGKVIIVEAII 290 (354)
Q Consensus 255 ~~lh~~~~~~~~~~L~~~~~~L~p~gG~lli~e~~~ 290 (354)
-- .+ ..++.+...+++ ||.++++-...
T Consensus 106 ~G-----~~---~~~~~~~~~~~~-g~~~~~v~~~~ 132 (176)
T d2fzwa2 106 IG-----NV---KVMRAALEACHK-GWGVSVVVGVA 132 (176)
T ss_dssp SC-----CH---HHHHHHHHTBCT-TTCEEEECSCC
T ss_pred CC-----CH---HHHHHHHHhhcC-CceeEEEEeec
Confidence 31 22 567788888998 88877654433
|
| >d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Listeriolysin regulatory protein PrfA, C-terminal domain species: Bacteria (Listeria monocytogenes) [TaxId: 1639]
Probab=85.04 E-value=0.47 Score=32.66 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHcChhhh--hhhCCCCCCHHHHHhHcCCC-cccHHHHHHHHhccCceeeccCCCCCceEecCcc
Q 018565 27 GFTNMAVVKCAVELGIAEA--VEEKGSPITLNELASALKCD-PSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTPL 99 (354)
Q Consensus 27 ~~~~~~~l~~a~~lglf~~--L~~~~~~~t~~elA~~~g~~-~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~ 99 (354)
|-+....+.-+-+.|.... ..-.--++|-+|||..+|++ ..-+.|.|+.|...|+++... +.+.....
T Consensus 4 G~va~~Ll~La~~~G~~~~~g~~i~~~~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~~-----~~i~I~D~ 74 (100)
T d2bgca1 4 GSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN-----SCFYVQNL 74 (100)
T ss_dssp HHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET-----TEEEESCH
T ss_pred cHHHHHHHHHHHHhCCCCCCCeEEeccccCHHHHHHHhCCchHHHHHHHHHHHHHCCCEEEcC-----CEEEEeCH
Confidence 3344555666666665321 11000268999999999997 578999999999999999887 66665544
|
| >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Penicillinase repressor domain: Methicillin resistance regulatory protein MecI species: Staphylococcus aureus [TaxId: 1280]
Probab=84.96 E-value=0.17 Score=36.27 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=40.3
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHc----CCCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASAL----KCDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~----g~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|+.|+..|=+. +|.|+.||.+.+ ++++.-+..+|+-|...|+|++..
T Consensus 8 ~E~~VM~~lW~~-~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~ 59 (120)
T d1okra_ 8 AEWEVMNIIWMK-KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 59 (120)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhcccCccHHhHHHHHHHHHHCCCeEEEe
Confidence 466677777654 799999988877 788999999999999999998776
|
| >d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Helicase DNA-binding domain domain: Hypothetical protein SSO1545, C-terminal domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.63 E-value=0.82 Score=29.19 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=35.8
Q ss_pred hhhhhhhCCCCCCHHHHHhHc----C--CCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 42 IAEAVEEKGSPITLNELASAL----K--CDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 42 lf~~L~~~~~~~t~~elA~~~----g--~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
|+..++. | .+-.+|=..+ | ++-..+..+|+-|..+|++++.+ +.|+.++
T Consensus 11 ILkaia~--G-~rWs~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek~~-----~~Y~i~D 65 (73)
T d2fnaa1 11 IMRTLSK--C-GKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-----EKYCPSE 65 (73)
T ss_dssp HHHHHTT--C-BCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-----SCEEESS
T ss_pred HHHHHHc--c-CcHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCceeecC-----CeeccCc
Confidence 3444554 4 4555554333 5 67789999999999999999986 7898875
|
| >d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: FUR-like domain: Ferric uptake regulation protein, FUR species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.55 E-value=0.65 Score=33.66 Aligned_cols=61 Identities=10% Similarity=0.155 Sum_probs=44.4
Q ss_pred HHcChhhhhhhCC-CCCCHHHHHhHc-----CCCcccHHHHHHHHhccCceeeccCCCCCceEecCc
Q 018565 38 VELGIAEAVEEKG-SPITLNELASAL-----KCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQQTP 98 (354)
Q Consensus 38 ~~lglf~~L~~~~-~~~t~~elA~~~-----g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~ 98 (354)
-+.-|++.|.+.. .+.|+++|-+.+ .++..-+.|.|+.|+..|++.+....++...|....
T Consensus 17 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gli~~~~~~~~~~~y~~~~ 83 (134)
T d1mzba_ 17 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELAD 83 (134)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEESS
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccEEEEEeecCCceEEEecC
Confidence 4567888886432 489999998776 356678999999999999998876543344555443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.13 E-value=2.6 Score=29.88 Aligned_cols=85 Identities=9% Similarity=0.061 Sum_probs=48.6
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHhhhcccCCCeEEeecCCCCC-------CCcceEEEeccccccCC
Q 018565 192 TLVDIGGNDGTTLRTLTKAF--PRIRGINFDL-PHVVCVAEKCHGVEHVGGDMFDG-------VPEADAAIIKWVLHDWG 261 (354)
Q Consensus 192 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~~~~D~i~~~~~lh~~~ 261 (354)
+++=+|+ |.++..+++.. -+..++++|. ++.++.++. .....+.+|..++ +.++|.+++.-. +
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~ 74 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-YATHAVIANATEENELLSLGIRNFEYVIVAIG----A 74 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-TCSEEEECCTTCTTHHHHHTGGGCSEEEECCC----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-hCCcceeeecccchhhhccCCccccEEEEEcC----c
Confidence 3455555 55555555432 3678899998 888888775 3345677888774 234776655321 1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEE
Q 018565 262 DDECIKILKNCKEAITKDKGKVII 285 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli 285 (354)
++....+...+++.+ | ..+++.
T Consensus 75 ~~~~~~~~~~~~~~~-~-~~~iia 96 (134)
T d2hmva1 75 NIQASTLTTLLLKEL-D-IPNIWV 96 (134)
T ss_dssp CHHHHHHHHHHHHHT-T-CSEEEE
T ss_pred hHHhHHHHHHHHHHc-C-CCcEEe
Confidence 333344444455544 4 456554
|
| >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: AraC type transcriptional activator domain: MarA species: Escherichia coli [TaxId: 562]
Probab=83.02 E-value=0.23 Score=29.87 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCc
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKF 81 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~ 81 (354)
.++|+++||+.+|+++..+.|+.+....+.+
T Consensus 18 ~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp 48 (54)
T d1bl0a1 18 SPLSLEKVSERSGYSKWHLQRMFKKETGHSL 48 (54)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHHHSSCH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 6999999999999999999999988776654
|
| >d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Vacuolar sorting protein domain domain: Vacuolar sorting protein SNF8 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.73 E-value=1.1 Score=28.12 Aligned_cols=45 Identities=4% Similarity=-0.039 Sum_probs=37.3
Q ss_pred CCCCHHHHHhHcCCCcccHHHHHHHHhccCceeeccCCCCCceEe
Q 018565 51 SPITLNELASALKCDPSLLQRIMRFLIHLKFFKEVPTSQGSMAFQ 95 (354)
Q Consensus 51 ~~~t~~elA~~~g~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~ 95 (354)
|-+|+..|-..+|.+..+....|+.|+..|++--+...+++..|-
T Consensus 16 G~Vt~s~l~~~lgW~~~Ra~~aLd~lv~eGl~WvD~Q~~~e~~YW 60 (68)
T d1u5ta2 16 GYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYW 60 (68)
T ss_dssp SCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEEE
T ss_pred CceeHHHHHHHhCCCHHHHHHHHHHHHhcCcEEEecCCCCCceee
Confidence 789999999999999999999999999999987775422233453
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=82.63 E-value=0.31 Score=36.97 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCceEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHhhhccc--CCCeEEeecCCCC---CCCcceEEEeccccccCC
Q 018565 189 GIETLVDIGGNDG-TTLRTLTKAFPRIRGINFDL-PHVVCVAEK--CHGVEHVGGDMFD---GVPEADAAIIKWVLHDWG 261 (354)
Q Consensus 189 ~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~---~~~~~D~i~~~~~lh~~~ 261 (354)
++.+|+=||+|.- ..+...+... +.+++++|. ++.++..+. ..+++....+-.. ...++|+|+..-.+---.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 5689999999965 5566666654 689999998 777766654 3445554432211 234689988865442211
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEeeeeCCC
Q 018565 262 DDECIKILKNCKEAITKDKGKVIIVEAIIEED 293 (354)
Q Consensus 262 ~~~~~~~L~~~~~~L~p~gG~lli~e~~~~~~ 293 (354)
.+ .-+=++..+.||| |+ +|+|...+..
T Consensus 110 aP--~lIt~~mv~~Mk~-GS--VIVDvaidqG 136 (168)
T d1pjca1 110 AP--ILVPASLVEQMRT-GS--VIVDVAVDQG 136 (168)
T ss_dssp CC--CCBCHHHHTTSCT-TC--EEEETTCTTC
T ss_pred cC--eeecHHHHhhcCC-Cc--EEEEeecCCC
Confidence 11 1234567788999 76 4566655443
|
| >d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Helicase DNA-binding domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=82.56 E-value=0.56 Score=30.10 Aligned_cols=38 Identities=29% Similarity=0.642 Sum_probs=34.7
Q ss_pred CCCCCHHHHHhHcCCCcccHHHHHH-HHhccCceeeccC
Q 018565 50 GSPITLNELASALKCDPSLLQRIMR-FLIHLKFFKEVPT 87 (354)
Q Consensus 50 ~~~~t~~elA~~~g~~~~~l~~lL~-~L~~~g~l~~~~~ 87 (354)
+||+.++.||..+|.+++-++.+.+ +|...|++.+...
T Consensus 20 ggPvGl~tlAa~l~e~~~TiEdviEPyLiq~G~i~RTpR 58 (75)
T d1in4a1 20 GGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPR 58 (75)
T ss_dssp TCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCCCcHHHHHHHHcCChhHHHHHhhHHHHHhhHHhhCCc
Confidence 5899999999999999999888876 7999999999984
|
| >d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Penicillinase repressor domain: Hypothetical protein Rv1846c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.66 E-value=0.48 Score=33.89 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=39.9
Q ss_pred HHcChhhhhhhCCCCCCHHHHHhHcC----CCcccHHHHHHHHhccCceeecc
Q 018565 38 VELGIAEAVEEKGSPITLNELASALK----CDPSLLQRIMRFLIHLKFFKEVP 86 (354)
Q Consensus 38 ~~lglf~~L~~~~~~~t~~elA~~~g----~~~~~l~~lL~~L~~~g~l~~~~ 86 (354)
.|+.|++.|=+.++|.|+.||.+.++ +.+.-+..+|+-|+..|+|+...
T Consensus 8 ~E~~IM~~lW~~g~~~t~~eI~~~l~~~~~~~~sTV~T~L~rL~~Kg~l~~~~ 60 (122)
T d2g9wa1 8 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 60 (122)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHhccCCCcHHHHHHHHHHHHHCCCEEEee
Confidence 46667777755446899999999985 45679999999999999998886
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=80.40 E-value=3.4 Score=27.71 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=44.7
Q ss_pred cCCCceEEEec-CCccHHHH--HHHHHCCCCeEEEeec--hHHhhhcccCCCeEEeecCCCCCCCcceEEEeccccc
Q 018565 187 FDGIETLVDIG-GNDGTTLR--TLTKAFPRIRGINFDL--PHVVCVAEKCHGVEHVGGDMFDGVPEADAAIIKWVLH 258 (354)
Q Consensus 187 ~~~~~~vLDvG-~G~G~~~~--~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~d~~~~~~~~D~i~~~~~lh 258 (354)
.....+|.=|| ||+|-.+. .|.++ +.++++.|. ........+ ..+.+..+.-.+..++.|+|+.+..+-
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTSC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCcC
Confidence 44567788887 77775553 34444 789999997 344444443 456666655444456789998888764
|