Citrus Sinensis ID: 018576
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.974 | 0.958 | 0.573 | 1e-119 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.977 | 0.950 | 0.577 | 1e-119 | |
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.977 | 0.985 | 0.566 | 1e-118 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.971 | 0.939 | 0.580 | 1e-117 | |
| Q9FK25 | 363 | Flavone 3'-O-methyltransf | yes | no | 0.926 | 0.900 | 0.593 | 1e-117 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.985 | 0.963 | 0.555 | 1e-116 | |
| Q43047 | 364 | Caffeic acid 3-O-methyltr | N/A | no | 0.971 | 0.942 | 0.586 | 1e-116 | |
| Q00763 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.971 | 0.939 | 0.577 | 1e-116 | |
| Q43046 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.971 | 0.939 | 0.577 | 1e-116 | |
| P28002 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.971 | 0.939 | 0.563 | 1e-116 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/349 (57%), Positives = 251/349 (71%), Gaps = 5/349 (1%)
Query: 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPT 68
D++F +A QLA +VLPM +++ EL + +I+ KAGPGA +S S++AAQLPTKN +AP
Sbjct: 12 EDEAFLFAMQLASASVLPMVLKSALELDLLEIMAKAGPGAAISPSELAAQLPTKNPEAPV 71
Query: 69 MLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDK 124
MLDR+LRLLA+YSV+ C+L DG R YSL V K N DGVS+ P L M QDK
Sbjct: 72 MLDRMLRLLATYSVLNCTLRTLPDGR-VERLYSLAPVCKLLTKNADGVSVAPLLLMNQDK 130
Query: 125 VFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILES 184
V +ESW HL DA+L+GG+PFN+A+GM AFEY DPRFNK FN M +H+++ M ILE
Sbjct: 131 VLMESWYHLTDAVLDGGVPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTMTMKKILED 190
Query: 185 YKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ 244
YKGF + +VDVGG G T+ I SKYP IKGINFD HVIE AP +P +EHV DMF
Sbjct: 191 YKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDAPAYPGVEHVGRDMFV 250
Query: 245 SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNS 304
SVPK DAIF+KWI HDW DEHCLK LKNCY+++P +GKV+V E +LPE P+TS +K+
Sbjct: 251 SVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNAV 310
Query: 305 HIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
H+D++M+ NPGGKERT+ EF LA GAGF+G R WVMEF+K
Sbjct: 311 HVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/350 (57%), Positives = 256/350 (73%), Gaps = 5/350 (1%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAP 67
E +++ A +LA +VLPM +++ EL + ++I K+GPGA +S S++AAQLPT+N DAP
Sbjct: 15 EEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQLPTQNPDAP 74
Query: 68 TMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQD 123
MLDRILRLLASYSV+ C+L DG G R YSL V K+ N+DGVS+ L M QD
Sbjct: 75 VMLDRILRLLASYSVLNCTLKDLPDG-GIERLYSLAPVCKFLTKNEDGVSMAALLLMNQD 133
Query: 124 KVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILE 183
KV +ESW HLKDA+LEGGIPFN+A+GM AFEY DPRFNK FN M NH+++IM ILE
Sbjct: 134 KVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFNKVFNQGMSNHSTIIMKKILE 193
Query: 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMF 243
Y+GF +K +VDVGG G TL I SKYP IKGINFD PHVIE AP +P ++HV GDMF
Sbjct: 194 IYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVDHVGGDMF 253
Query: 244 QSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSN 303
SVPKGDAIF+KWI HDW D HCLK LKNC++++PE+GKVI+ E +LPE P++++ +++
Sbjct: 254 VSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKVILAECLLPEAPDSTLSTQNT 313
Query: 304 SHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
H+DV+M+ NPGGKERT+ EF LA GAGF G N W+ME K
Sbjct: 314 VHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYNSWIMELLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/348 (56%), Positives = 251/348 (72%), Gaps = 3/348 (0%)
Query: 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPT 68
+++ +A LA +VLPM +++ EL + ++I KAGPGA +S S++AAQLPT N +AP
Sbjct: 3 EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62
Query: 69 MLDRILRLLASYSVVECSLDG---SGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
MLDRILRLLA+YSV++C L+ G R Y L V K+ N DGVS+ P L M QDKV
Sbjct: 63 MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW HLKDA+L+GGIPFN+A+GM AFEY DPRFNK FN M NH+++ M ILE Y
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
+GF +K +VDVGG G TL I SKYP IKGINF+ PHV+E AP H +EHV GDMF S
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVS 242
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VPKGDAIF+KWI HDW D+HC KLLKNCY+++P++GKVI+ E +LPE P+TS+ +++ H
Sbjct: 243 VPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVH 302
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+DV+M+ NPGGKERT+ EF LA GAGF R N W+ME K
Sbjct: 303 VDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/348 (58%), Positives = 249/348 (71%), Gaps = 5/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
+++ +A QLA +VLPM ++A EL + +I+ KAGPG LS +DIA+QLPTKN DAP M
Sbjct: 17 EEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVM 76
Query: 70 LDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
LDR+LRLLASYS++ SL DG R Y L V K+ N++GVS+ P M QDKV
Sbjct: 77 LDRMLRLLASYSILTYSLRTLADGK-VERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKV 135
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
LESW HLKDA+LEGGIPFN+A+GM AFEY DPRFNK FN M +H+++ M ILE+Y
Sbjct: 136 LLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETY 195
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
KGF + +VDVGG G L I SKYP IKGINFD PHVIE AP +P +EHV GDMF S
Sbjct: 196 KGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVS 255
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VPKGDAIF+KWI HDW DEHCLK LKNCY ++P++GKVI+ E +LP P++S+ +K H
Sbjct: 256 VPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPVAPDSSLATKGVVH 315
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
IDV+M+ NPGGKERT+ EF LA GAGF G N +V+EF K
Sbjct: 316 IDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/332 (59%), Positives = 245/332 (73%), Gaps = 5/332 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
D++ +A QLA +VLPMA+++ EL + +I+ K G + +S ++IA++LPTKN +AP M
Sbjct: 17 DEAALFAMQLASASVLPMALKSALELDLLEIMAKNG--SPMSPTEIASKLPTKNPEAPVM 74
Query: 70 LDRILRLLASYSVVECS---LDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVF 126
LDRILRLL SYSV+ CS L G G R Y L V KY N+DGVS+ M QDKV
Sbjct: 75 LDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVL 134
Query: 127 LESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYK 186
+ESW HLKDAIL+GGIPFN+A+GM AFEY DPRFNK FN M NH+++ M ILE+YK
Sbjct: 135 MESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYK 194
Query: 187 GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSV 246
GF + LVDVGG +G TL+ I SKYP +KGINFD PHVIE AP HP IEHV GDMF SV
Sbjct: 195 GFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSV 254
Query: 247 PKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306
PKGDAIF+KWI HDW DEHC+K LKNCY+S+PEDGKVI+ E +LPE P++S+ +K H+
Sbjct: 255 PKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHV 314
Query: 307 DVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338
D +M+ NPGGKERT+ EF LA +GF GI+
Sbjct: 315 DCIMLAHNPGGKERTEKEFEALAKASGFKGIK 346
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Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 6 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/353 (55%), Positives = 249/353 (70%), Gaps = 5/353 (1%)
Query: 5 VDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNK 64
++ + +++F +A QLA +VLPM +++ EL + ++I K+G GA +S D+AAQLPT N
Sbjct: 10 INSDEEENFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPTTNP 69
Query: 65 DAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQM 120
DA MLDRILRLL SY+++EC L DG G R Y L V K+ N+DGVS+ P M
Sbjct: 70 DAHVMLDRILRLLTSYAILECRLKTLPDG-GVERLYGLAPVCKFLTKNEDGVSMAPLTLM 128
Query: 121 IQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSN 180
QDKV +ESW HL DA+++GGIPFN+A+GM AFEY DPRFNK FN M NH+++ M
Sbjct: 129 NQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKK 188
Query: 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240
ILE+Y GF +K +VDVGG G TL I SKYP IKGINFD PHVIE AP +P +EHV G
Sbjct: 189 ILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGG 248
Query: 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES 300
DMF SVPKGDAIF+KWI HDW DEHC+K LKNCY ++P++GKVI+ E +LPE P+T + +
Sbjct: 249 DMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLAT 308
Query: 301 KSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
K+ HIDV+M+ NPGGKERT+ EF LA AGF N W+ME K
Sbjct: 309 KNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/348 (58%), Positives = 243/348 (69%), Gaps = 5/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
D+ +A QL +VLPM ++ EL + +I+ KAGPGA LS SDIA+ LPTKN DAP M
Sbjct: 16 DEEANFAMQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLSPSDIASHLPTKNPDAPVM 75
Query: 70 LDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
LDRILRLLASYS++ CSL DG R Y L SV K+ N+DGVS+ P M QDKV
Sbjct: 76 LDRILRLLASYSILICSLRDLPDGK-VERLYGLASVCKFLTKNEDGVSVSPLCLMNQDKV 134
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW HLKDAILEGGIPFN+A+GM AFEY DPRFNK FN M +H+ + M ILESY
Sbjct: 135 LMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSKMAMKKILESY 194
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
KGF + LVDVGG G + I SKYP IKGINFD PHVI AP P +E+V GDMF S
Sbjct: 195 KGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVGGDMFVS 254
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VPK DA+F+KWI HDW DEHCL+LLKNCY ++PE+GKVI+VE +LP P+TS+ +K H
Sbjct: 255 VPKADAVFMKWICHDWSDEHCLRLLKNCYDALPENGKVILVECILPVAPDTSLATKGVMH 314
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+D +M+ NPGGKERT EF LA GAGF G N V+EF K
Sbjct: 315 VDAIMLAHNPGGKERTDKEFEGLARGAGFKGFEVMCCAFNTHVIEFRK 362
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/348 (57%), Positives = 247/348 (70%), Gaps = 5/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
+++ +A QLA +VLPM ++ EL + +I+ KAGPGA LS S+IA+ LPTKN DAP M
Sbjct: 17 EEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVM 76
Query: 70 LDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
LDRILRLLASYS++ CSL DG R Y L V K+ N+DGVS+ P M QDKV
Sbjct: 77 LDRILRLLASYSILTCSLKDLPDGK-VERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKV 135
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW +LKDAIL+GGIPFN+A+GM AFEY DPRFNK FN M +H+++ M ILE+Y
Sbjct: 136 LMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
KGF + LVDVGG G + I SKYP IKGINFD PHVIE AP +P +EHV GDMF S
Sbjct: 196 KGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 255
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VPK DA+F+KWI HDW D HCLK LKNCY ++PE+GKVI+VE +LP P+TS+ +K H
Sbjct: 256 VPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVH 315
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+DV+M+ NPGGKERT+ EF LA GAGF G N V+EF K
Sbjct: 316 VDVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEFRK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/348 (57%), Positives = 246/348 (70%), Gaps = 5/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
+++ +A QLA +VLPM ++ EL + +I+ KAGPGA LS S+IA+ LPTKN DAP M
Sbjct: 17 EEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVM 76
Query: 70 LDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
LDRILRLLASYS++ CSL DG R Y L V K+ N+DGVS+ P M QDKV
Sbjct: 77 LDRILRLLASYSILTCSLKDLPDGK-VERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKV 135
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW +LKDAILEGGIPFN+A+GM AFEY DPRFNK FN M +H+++ M ILE+Y
Sbjct: 136 LMESWYYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
KGF + LVDVGG G + I SKYP IKGINFD PHVIE AP +P +EHV GDMF S
Sbjct: 196 KGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 255
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VP DA+F+KWI HDW D HCLK LKNCY ++PE+GKVI+VE +LP P+TS+ +K H
Sbjct: 256 VPNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVH 315
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+DV+M+ NPGGKERT+ EF LA GAGF G N V+EF K
Sbjct: 316 VDVIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVIEFRK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/348 (56%), Positives = 252/348 (72%), Gaps = 5/348 (1%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
+++ +A QLA +VLPM +++ EL + +II KAGPGA++S +IA+QLPT N DAP M
Sbjct: 17 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVM 76
Query: 70 LDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
LDR+LRLLA Y ++ CS+ DG +R Y L +V+KY V N+DGVS+ M QDKV
Sbjct: 77 LDRMLRLLACYIILTCSVRTQQDGK-VQRLYGLATVAKYLVKNEDGVSISALNLMNQDKV 135
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW HLKDA+L+GGIPFN+A+GM AFEY DPRFNK FN M +H+++ M ILE+Y
Sbjct: 136 LMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETY 195
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
GF +K LVDVGG G + I SKYP IKGINFD PHVIE AP +P +EHV GDMF S
Sbjct: 196 TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVS 255
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
+PK DA+F+KWI HDW DEHCLK LKNCY+++P++GKVIV E +LP P++S+ +K H
Sbjct: 256 IPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVH 315
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
IDV+M+ NPGGKERT+ EF LA GAGF G + N ++MEF K
Sbjct: 316 IDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| 145695037 | 353 | O-methyltransferase [Citrus sinensis x C | 1.0 | 1.0 | 0.849 | 0.0 | |
| 224128073 | 358 | catechol o-methyltransferase related [Po | 0.983 | 0.969 | 0.676 | 1e-140 | |
| 224068173 | 359 | catechol o-methyltransferase [Populus tr | 0.988 | 0.972 | 0.642 | 1e-133 | |
| 284437809 | 377 | O-methyltransferase-like protein [Prunus | 0.968 | 0.907 | 0.635 | 1e-131 | |
| 255548061 | 359 | o-methyltransferase, putative [Ricinus c | 0.983 | 0.966 | 0.608 | 1e-129 | |
| 224068181 | 336 | catechol o-methyltransferase [Populus tr | 0.946 | 0.994 | 0.646 | 1e-127 | |
| 268528131 | 356 | caffeic acid O-methyltransferase 3 [Goss | 1.0 | 0.991 | 0.587 | 1e-124 | |
| 225453640 | 359 | PREDICTED: quercetin 3-O-methyltransfera | 0.946 | 0.930 | 0.617 | 1e-123 | |
| 356520217 | 372 | PREDICTED: anthranilate N-methyltransfer | 0.980 | 0.930 | 0.594 | 1e-122 | |
| 357512657 | 362 | Caffeic acid 3-O-methyltransferase [Medi | 0.980 | 0.955 | 0.584 | 1e-122 |
| >gi|145695037|gb|ABP94018.1| O-methyltransferase [Citrus sinensis x Citrus reticulata] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/353 (84%), Positives = 326/353 (92%)
Query: 1 MGSIVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP 60
M SIVDGERDQSFAYANQLAMGT+LPMA+Q VYELGIF+I+DK GPGAKL ASDIAAQL
Sbjct: 1 MDSIVDGERDQSFAYANQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLL 60
Query: 61 TKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQM 120
TKNKDAP MLDRILRLLASYSVVECSLD SGARR YSLNSVSKYYVPNKDGV LGP +Q+
Sbjct: 61 TKNKDAPMMLDRILRLLASYSVVECSLDASGARRLYSLNSVSKYYVPNKDGVLLGPLIQI 120
Query: 121 IQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSN 180
+QDKVFL+SWS LKDAILEGGIPFNRAHG+H FEY +DP+FNKHFNTAMYN+TSL+MSN
Sbjct: 121 VQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYTGLDPKFNKHFNTAMYNYTSLVMSN 180
Query: 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240
ILESYKGF NIKQLVDVGG+LG+TLQAIT+KYPYIKGINFDQPHVI+HAP HP IEHV G
Sbjct: 181 ILESYKGFDNIKQLVDVGGSLGITLQAITTKYPYIKGINFDQPHVIDHAPPHPRIEHVGG 240
Query: 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES 300
DMFQSVPKGDAIF+K +LHDW+DEHCLKLLKNCYKS+PEDGKVIVVE MLPEVPNTSIES
Sbjct: 241 DMFQSVPKGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIES 300
Query: 301 KSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
KSNSH+DVLMM Q+PGGKERT+HEFMTLATGAGF GI +L G+ WVMEFYK
Sbjct: 301 KSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGSLWVMEFYK 353
|
Source: Citrus sinensis x Citrus reticulata Species: Citrus sinensis x Citrus reticulata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/349 (67%), Positives = 286/349 (81%), Gaps = 2/349 (0%)
Query: 5 VDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNK 64
VD +D++F YA QLA+ +VLPM M + +LGIF+II KAGP AKLSASD+AAQLPTKN
Sbjct: 12 VDEAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTKNP 71
Query: 65 DAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDK 124
DAP MLDRILRLLAS+ V+ CS+DGS R YSL VSK+YV NKDGVSLGP + +IQD
Sbjct: 72 DAPMMLDRILRLLASHDVLGCSVDGS--ERLYSLAPVSKHYVRNKDGVSLGPFMALIQDN 129
Query: 125 VFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILES 184
VFL+SWS LKDA+LEGG+ F+R HG HAFEY +DPRFN+ FNTAMYN T++++ N+LE+
Sbjct: 130 VFLQSWSQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEA 189
Query: 185 YKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ 244
Y GF N+KQLV++GG +G T++AI SKYP IKGINFD PHVIEHAP P +EHV GDMF+
Sbjct: 190 YTGFKNLKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFE 249
Query: 245 SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNS 304
SVPKGDAIFLKWILHDW D+HCLKLLKNCYK++P++GKVIV+E +L TS +++ S
Sbjct: 250 SVPKGDAIFLKWILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAARAIS 309
Query: 305 HIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+DVLMMTQNPGGKERT+HEFM LATGAGF GI+ + NFWVMEF+K
Sbjct: 310 QLDVLMMTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/352 (64%), Positives = 278/352 (78%), Gaps = 3/352 (0%)
Query: 3 SIVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTK 62
S VD +D++F YA QLA+ +VLPM + +LGIF+II KAGP KLSA+DIAA+LPT
Sbjct: 10 SQVDEAKDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTD 69
Query: 63 NKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQ 122
N D P MLDRILRLLAS+ V+ C +DGS R YSL VS Y+V N++GVSL P + +I
Sbjct: 70 NPDTPKMLDRILRLLASHQVLCCFVDGS--ERFYSLAPVSMYFVRNQNGVSLAPFMALIH 127
Query: 123 DKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNIL 182
+ V L+SWS LKDA+LEGG+ F+R HG+HAFEY +DPRFN+ FNTAMYN T+++ N+L
Sbjct: 128 ENVILQSWSQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVNGNML 187
Query: 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDM 242
E Y GF N+KQLVD+GG LG T++A+TSKYP IKGINFD PHVIEHAP +P +EHV GDM
Sbjct: 188 EKYNGFKNLKQLVDIGGGLGHTMKAVTSKYPQIKGINFDLPHVIEHAPAYPGVEHVGGDM 247
Query: 243 FQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS 302
F+SVPKGDAIFLKWILH+W D+HCLKLLKNCYK++PEDGKVIV+E +LP TS +K+
Sbjct: 248 FESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKA 307
Query: 303 NSHIDVL-MMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
S +DVL MM+QNPGGKERT+ EFM LAT AGF GI+ + NFWVMEF+K
Sbjct: 308 ISQLDVLMMMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/348 (63%), Positives = 275/348 (79%), Gaps = 6/348 (1%)
Query: 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLD 71
SF YA QL + L M++Q+ +LG+F II + GP AKLS+S IAA++ TKN +AP M+D
Sbjct: 30 SFCYAMQLVGSSALSMSLQSAIKLGVFDIIAREGPDAKLSSSGIAAKIGTKNPEAPMMVD 89
Query: 72 RILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL 127
RILRLL S+SV+ CS GS +R YSL VSKY+V +++G SLGP++ +IQDKVF+
Sbjct: 90 RILRLLTSHSVLNCSAVAANGGSDFQRVYSLGPVSKYFVSDEEGGSLGPSMTLIQDKVFM 149
Query: 128 ESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKG 187
ESWS LKDA++EGGIPFNR HGMHAFEY +DPRFN+ FNTAM+NHT++++ +L YKG
Sbjct: 150 ESWSQLKDAVVEGGIPFNRVHGMHAFEYPGLDPRFNQVFNTAMFNHTTIVIKKLLHIYKG 209
Query: 188 F--ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
N+ QLVDVGG LGVTL ITS+Y +IKGINFD PHV+ HAP +P +EHV GDMF S
Sbjct: 210 LEDKNLTQLVDVGGGLGVTLNLITSRYQHIKGINFDLPHVVNHAPSYPGVEHVGGDMFAS 269
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VP GDAIF+KWILHDW DEHCLKLLKNCYK++P++GKVIVVE +LP +P TS +K+ S
Sbjct: 270 VPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTATKTTSQ 329
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+DV+MMTQNPGGKER++ EFM LATGAGFSGIR + NFWVMEF+K
Sbjct: 330 LDVVMMTQNPGGKERSEQEFMALATGAGFSGIRYECFVCNFWVMEFFK 377
|
Source: Prunus mume Species: Prunus mume Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust.
Identities = 213/350 (60%), Positives = 280/350 (80%), Gaps = 3/350 (0%)
Query: 5 VDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKN 63
+D E D++F YA QLA+G+ LPM++ A ELG+F+II KAGP +KLSAS+I A++P +N
Sbjct: 12 IDEEHDENFGYAMQLALGSALPMSLHAAIELGVFEIIAKAGPESKLSASEITAEIPDVQN 71
Query: 64 KDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQD 123
DA LDR+LRLLAS++V+ CSL+G R YSLN VSKY+VPN+DG+SLGP + +IQD
Sbjct: 72 PDAAITLDRVLRLLASHNVLGCSLNG--LERLYSLNPVSKYFVPNQDGISLGPFMALIQD 129
Query: 124 KVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILE 183
KVFL+SW+ LKDA+LEGG PFN+ HG H F Y +D RFN FNTAM++HT+L+++ ILE
Sbjct: 130 KVFLDSWTKLKDAVLEGGSPFNKFHGTHCFGYSGLDSRFNHVFNTAMFHHTNLVITKILE 189
Query: 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMF 243
+YKGF +KQL+DVGG LG TL+AI SKYP++KGINFD PHV+++AP P +EHVAGDMF
Sbjct: 190 TYKGFKQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLPHVVKYAPAIPGVEHVAGDMF 249
Query: 244 QSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSN 303
+SVPKG+AIF+KWILHDW DEHCL+LLKNCY+++P+DGKVIV++ +LP +P T +K+N
Sbjct: 250 ESVPKGEAIFMKWILHDWSDEHCLRLLKNCYEALPDDGKVIVMDAVLPVMPETGKAAKAN 309
Query: 304 SHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
D+++MT GG ERT+HEF+ +AT AGF GIR NFW+MEF+K
Sbjct: 310 FQTDLVVMTVYEGGTERTEHEFLAMATAAGFRGIRYVCCACNFWIMEFFK 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068181|ref|XP_002302677.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844403|gb|EEE81950.1| catechol o-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/337 (64%), Positives = 267/337 (79%), Gaps = 3/337 (0%)
Query: 18 QLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77
QLA+ +VLPM + +LGIF+II KAGP KLSA+DIAA+LPT N D P MLDRILRLL
Sbjct: 2 QLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRLL 61
Query: 78 ASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAI 137
AS+ V+ C +DGS R YSL VS Y+V N++GVSL P + +IQ+ V L+SWS LKDA+
Sbjct: 62 ASHQVLCCFVDGS--ERFYSLAPVSMYFVRNQNGVSLAPFMALIQENVVLQSWSQLKDAV 119
Query: 138 LEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDV 197
LEGG+ F+R HG+H FEY +DP+FN+ FNTAMYN T+++ +LE Y GF N+KQLVD+
Sbjct: 120 LEGGVAFHRVHGVHGFEYNGLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKNLKQLVDI 179
Query: 198 GGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWI 257
GG LG T++AITSKYP+IKGINFD PHVIEHAP +P +EHV GDMF+SVPKGDAIFLKWI
Sbjct: 180 GGGLGHTMKAITSKYPHIKGINFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWI 239
Query: 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMM-TQNPG 316
LH+W D+HCLKLLKNCYK++P DGKVIV+E +LP TS +K+ S +DVLMM TQNPG
Sbjct: 240 LHNWSDDHCLKLLKNCYKAIPGDGKVIVMESVLPITAKTSPAAKAISQLDVLMMITQNPG 299
Query: 317 GKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
GKERT+ EFM LAT AGF GI+ + NFWVMEF+K
Sbjct: 300 GKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 336
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|268528131|gb|ACZ06242.1| caffeic acid O-methyltransferase 3 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 271/356 (76%), Gaps = 3/356 (0%)
Query: 1 MGSIVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP 60
M + +D ++SF+YA Q+ +VLPM+M A +L IF I+ K GP AKLSA +IAAQL
Sbjct: 1 MATQIDCNNEESFSYALQIVTSSVLPMSMHAAVQLDIFGIMAKCGPDAKLSAKEIAAQLA 60
Query: 61 TKNKDAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVPNKDGVSLGPA 117
T N +A +MLDRIL LLAS+ +V CS+ + R+ YSL VSK++V N+DGVSLGP
Sbjct: 61 TNNSEAASMLDRILLLLASHGIVGCSVVDEEKGNPRKLYSLTPVSKFFVRNEDGVSLGPL 120
Query: 118 LQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLI 177
+ ++QDKVF++SWS LKDAI+EGG+PF+R HG + FEY DPRFN+ FNTAM NHTSL+
Sbjct: 121 MALLQDKVFIDSWSQLKDAIIEGGVPFDRVHGSNTFEYPGKDPRFNQIFNTAMINHTSLV 180
Query: 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEH 237
+ IL +YKGF + LVDVGG LG+TL ITSKYP IKGINFD PHVI+HAP +P ++H
Sbjct: 181 LKEILHNYKGFQQLSSLVDVGGGLGITLNLITSKYPSIKGINFDLPHVIQHAPAYPGVQH 240
Query: 238 VAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS 297
V DMF+SVPKG AIF+KWILHDW +HCLKLLKNCY ++P+DGKVIVVE ++P+VP +
Sbjct: 241 VGRDMFESVPKGAAIFMKWILHDWSGDHCLKLLKNCYNAIPKDGKVIVVEAVVPDVPEAN 300
Query: 298 IESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+S + +D++M+ Q+PGGKERTK EF LAT AGFSGIR + ++W+MEF+K
Sbjct: 301 AYLRSITQVDMVMLAQDPGGKERTKSEFEALATKAGFSGIRYECFACSYWIMEFFK 356
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453640|ref|XP_002267179.1| PREDICTED: quercetin 3-O-methyltransferase 1 isoform 1 [Vitis vinifera] gi|147785074|emb|CAN75449.1| hypothetical protein VITISV_028011 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/340 (61%), Positives = 263/340 (77%), Gaps = 6/340 (1%)
Query: 14 AYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRI 73
+YA QL +VLPM MQ ELG+F II K G + SAS+IA++LPTKN +AP MLDR+
Sbjct: 24 SYAMQLVTSSVLPMVMQTSIELGLFDIIAKLG---QASASEIASRLPTKNPEAPIMLDRM 80
Query: 74 LRLLASYSVVECS-LDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSH 132
L LL ++SV+ CS +DG R Y+L VSKY+ N+DGVS GP L +IQDKVF++SWS
Sbjct: 81 LYLLTTHSVLSCSAIDGD--ERVYALTPVSKYFASNQDGVSFGPLLALIQDKVFMDSWSQ 138
Query: 133 LKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIK 192
LK+AI+EGGIPFNR HG HAFEY DPRFN+ FNTAM+NHT++I++ ILESYKGF ++
Sbjct: 139 LKNAIIEGGIPFNRVHGSHAFEYPGKDPRFNQVFNTAMFNHTTIIVNKILESYKGFEHLT 198
Query: 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDAI 252
++VDVGG LG TL ITSKYP+I+ INFD PHVIEHA P +EH+ GDMF+SVPKGDAI
Sbjct: 199 RVVDVGGGLGTTLSIITSKYPHIEAINFDLPHVIEHAVAFPGVEHIGGDMFESVPKGDAI 258
Query: 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT 312
F+KWILHDW D+HCLKLLKNCYK++PE GKVI+VE +LPE+P K+ D++M+T
Sbjct: 259 FMKWILHDWSDDHCLKLLKNCYKALPEHGKVIIVEGVLPEIPEKGSTVKAICQTDLIMLT 318
Query: 313 QNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
QNPGGKERT+ EF+ LA GAGF+GIR + +WVME +
Sbjct: 319 QNPGGKERTRKEFLDLAIGAGFAGIRYECYVSCYWVMEIF 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520217|ref|XP_003528760.1| PREDICTED: anthranilate N-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/353 (59%), Positives = 258/353 (73%), Gaps = 7/353 (1%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAP 67
E +A + V P ++ ELGIF II KAG GAKLSA +I QL TKN +AP
Sbjct: 20 EEQDGILFAMNMMSTMVYPFVVRTAIELGIFDIIAKAGEGAKLSAEEIIEQLGTKNPEAP 79
Query: 68 TMLDRILRLLASYSVVECSLDG-------SGARRRYSLNSVSKYYVPNKDGVSLGPALQM 120
TMLDR+LRLLAS+S++ SLD + +R YSL SKY+V + DGVS G L +
Sbjct: 80 TMLDRLLRLLASHSMLSSSLDTEDLQHGQNSPKRLYSLTYASKYFVTDADGVSFGATLNL 139
Query: 121 IQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSN 180
+ DKVFLESW+ LK AILEGG+ FNR H MH+FEY VDPRFN FN AM+N T+++M
Sbjct: 140 LLDKVFLESWTELKGAILEGGVAFNRVHSMHSFEYPAVDPRFNDVFNKAMFNLTTIVMKR 199
Query: 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240
+LE Y+GF NI +LVDVGG LG+ L ITSKYP+++G+NFD PHVIEHAP +P IEHV G
Sbjct: 200 VLEFYEGFKNINRLVDVGGGLGINLNLITSKYPHVQGVNFDLPHVIEHAPTYPGIEHVGG 259
Query: 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES 300
DMF+SVP GDAIF+KWILHDW DE CLKLLKNC+K++P DGKVIVV+L+LP +P +++ +
Sbjct: 260 DMFESVPNGDAIFMKWILHDWSDEQCLKLLKNCHKAIPSDGKVIVVDLILPILPESTVTA 319
Query: 301 KSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
KS D+LMMTQN GGKERT+HEFM LA +GFSGI+ FWVMEFYK
Sbjct: 320 KSGFQADLLMMTQNSGGKERTQHEFMELALSSGFSGIKIVCSVSGFWVMEFYK 372
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512657|ref|XP_003626617.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|87240860|gb|ABD32718.1| O-methyltransferase, family 2; Dimerisation [Medicago truncatula] gi|355501632|gb|AES82835.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 205/351 (58%), Positives = 267/351 (76%), Gaps = 5/351 (1%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAP 67
E ++SF+YA QL+ VL MA+Q+ ELG+F+++ KAG LS+ +IA++L N DAP
Sbjct: 12 EDEESFSYAVQLSNSIVLSMALQSAIELGVFEVLQKAGRDTPLSSDEIASRLSCTNPDAP 71
Query: 68 TMLDRILRLLASYSVVECSL-----DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQ 122
MLDRIL LLAS+SV+ CS+ + R Y++ SV+K++ PN DGVSLGP + + Q
Sbjct: 72 KMLDRILALLASHSVLNCSVHPDQHNLGSFHRLYAMTSVAKFFAPNSDGVSLGPLIALHQ 131
Query: 123 DKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNIL 182
DK++L+SWS LKDAI EGGIPFNR +G + FEY +D RFN+ FNTAM NHT+++M+ +L
Sbjct: 132 DKIYLQSWSQLKDAIREGGIPFNRVYGTNDFEYASIDSRFNQVFNTAMINHTTIVMNKVL 191
Query: 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDM 242
+SYKGF ++K+LVDVGG LGV + ITSK+P+I GINFD PHVI+HAP +P +EHV GDM
Sbjct: 192 QSYKGFEDVKRLVDVGGGLGVNINLITSKHPHIHGINFDLPHVIQHAPSYPGVEHVGGDM 251
Query: 243 FQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS 302
F++VPK DAIF+KWILHDW DE CLKLLKNCY ++P+DGKVIV+E +L +P + K
Sbjct: 252 FETVPKADAIFMKWILHDWSDEQCLKLLKNCYDAIPDDGKVIVLEAVLSIIPENNAAWKF 311
Query: 303 NSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+ DVLMMTQ+PGGKERT+ EFM LA GAGFSGIR + FWVMEF+K
Sbjct: 312 AAQSDVLMMTQSPGGKERTEQEFMDLANGAGFSGIRYECYVHTFWVMEFFK 362
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.926 | 0.900 | 0.593 | 6.5e-106 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.971 | 0.952 | 0.505 | 2.4e-92 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.974 | 0.934 | 0.490 | 2.7e-91 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.951 | 0.881 | 0.447 | 1.3e-77 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.954 | 0.884 | 0.442 | 2.4e-76 | |
| TAIR|locus:2038026 | 352 | AT1G33030 [Arabidopsis thalian | 0.971 | 0.974 | 0.443 | 1.7e-75 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.974 | 0.922 | 0.458 | 1.2e-74 | |
| TAIR|locus:2199582 | 373 | IGMT4 "indole glucosinolate O- | 0.977 | 0.924 | 0.448 | 8.4e-74 | |
| TAIR|locus:2199597 | 373 | IGMT3 "indole glucosinolate O- | 0.983 | 0.930 | 0.445 | 1.7e-73 | |
| TAIR|locus:2164087 | 378 | AT5G53810 [Arabidopsis thalian | 0.957 | 0.894 | 0.46 | 1.7e-73 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 197/332 (59%), Positives = 245/332 (73%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
D++ +A QLA +VLPMA+++ EL + +I+ K G + +S ++IA++LPTKN +AP M
Sbjct: 17 DEAALFAMQLASASVLPMALKSALELDLLEIMAKNG--SPMSPTEIASKLPTKNPEAPVM 74
Query: 70 LDRILRLLASYSVVECS---LDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVF 126
LDRILRLL SYSV+ CS L G G R Y L V KY N+DGVS+ M QDKV
Sbjct: 75 LDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVL 134
Query: 127 LESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYK 186
+ESW HLKDAIL+GGIPFN+A+GM AFEY DPRFNK FN M NH+++ M ILE+YK
Sbjct: 135 MESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYK 194
Query: 187 GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSV 246
GF + LVDVGG +G TL+ I SKYP +KGINFD PHVIE AP HP IEHV GDMF SV
Sbjct: 195 GFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSV 254
Query: 247 PKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306
PKGDAIF+KWI HDW DEHC+K LKNCY+S+PEDGKVI+ E +LPE P++S+ +K H+
Sbjct: 255 PKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHV 314
Query: 307 DVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338
D +M+ NPGGKERT+ EF LA +GF GI+
Sbjct: 315 DCIMLAHNPGGKERTEKEFEALAKASGFKGIK 346
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 920 (328.9 bits), Expect = 2.4e-92, P = 2.4e-92
Identities = 176/348 (50%), Positives = 237/348 (68%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPT 68
+++ YA QL ++LPM ++ ELG+ + + AG G L+ +++AA+LP T N A
Sbjct: 14 EEACMYALQLVSSSILPMTLKNAIELGLLETLVAAG-GKLLTPAEVAAKLPSTANPAAAD 72
Query: 69 MLDRILRLLASYSVVECSLD-GSGAR--RRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
M+DR+LRLLASY+VV C+++ G R RRY V K+ PN+DGVS+ M QDKV
Sbjct: 73 MVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKV 132
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
+ESW +LKDA+L+GGIPFN+A+GM AFEY DPRFN+ FN M NH+ +I +LE Y
Sbjct: 133 LMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVY 192
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
KGF + +VDVGG +G T+ AIT+ YP IKGINFD PHVI A P + HV GDMFQ
Sbjct: 193 KGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPFPGVTHVGGDMFQK 252
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VP GDAI +KWILHDW DEHC LLKNCY ++P GKV++VE +LP P + +++ H
Sbjct: 253 VPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPVNPEATPKAQGVFH 312
Query: 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+D++M+ NPGG+ER + EF LA GAGF I++ + N + +EF K
Sbjct: 313 VDMIMLAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFTK 360
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
Identities = 174/355 (49%), Positives = 242/355 (68%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKA---GPGAK---LSASDIAAQLPTK- 62
+++ YA QLA ++LPM ++ ELG+ + + A G G K L+ +++A +LP+K
Sbjct: 14 EEACMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVADKLPSKA 73
Query: 63 NKDAPTMLDRILRLLASYSVVECSLD-GSGAR--RRYSLNSVSKYYVPNKDGVSLGPALQ 119
N A M+DR+LRLLASY+VV C ++ G+ + RRY+ V K+ PN+DGVS+
Sbjct: 74 NPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSMAALAL 133
Query: 120 MIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMS 179
M QDKV +ESW +LKDA+L+GGIPFN+A+GM AFEY D RFN+ FN M NH+ +I
Sbjct: 134 MNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITK 193
Query: 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVA 239
+L+ Y GF +VDVGG +G T+ A+ S++P+I+GIN+D PHVI AP P +EHV
Sbjct: 194 KLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPPFPGVEHVG 253
Query: 240 GDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSI 298
GDMF SVP+G DAI +KWILHDW DEHC +LLKNCY ++PE GKV+VVE +LPE + +
Sbjct: 254 GDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATA 313
Query: 299 ESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+ H+D++M+ NPGGKER + EF LA AGF+G ++ + N W +EF K
Sbjct: 314 REQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
Identities = 157/351 (44%), Positives = 224/351 (63%)
Query: 16 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTK--NKDAPTMLDRI 73
A + PM ++A +ELG+ I AG LS +IA LPTK N +AP +LDR+
Sbjct: 33 AESIVNTVAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTKPTNPEAPVLLDRM 92
Query: 74 LRLLASYSVVECSL--DGSGAR-----RRYSLNSVSKYYVPNKDGV-SLGPALQMIQDKV 125
L LL S+S+++C + G R R Y+ V KY++ + DG SL P ++ +V
Sbjct: 93 LSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGSLVPLFMLLHTQV 152
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
F ++W++LKD ILEG FN AHGM FEY D F + FN AM +++IM +L+ Y
Sbjct: 153 FFKTWTNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIMKKVLDVY 212
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
+GF ++ LVDVGG G L +TSKYP+IKG+NFD V+ AP +P +EHV+GDMF
Sbjct: 213 RGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFYPGVEHVSGDMFVE 272
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNS 304
VPKGDA+F+KWILHDW DE C+K+LKNC+KS+PE GK+I+VE + P+ P + S +
Sbjct: 273 VPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPKEPKGGDLSSNTVF 332
Query: 305 HIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV--TGNFWVMEFYK 353
+D+LM+TQ GGKER+ +F LA +GF +R +++ ++ V+EF+K
Sbjct: 333 AMDLLMLTQCSGGKERSLSQFENLAFASGF--LRCEIICLAYSYSVIEFHK 381
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 155/350 (44%), Positives = 225/350 (64%)
Query: 16 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTK--NKDAPTMLDRI 73
A + PM ++A ELG+ I A G LS S+IA LP K N +AP +LDR+
Sbjct: 33 AESIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKPTNPEAPVLLDRM 92
Query: 74 LRLLASYSVVECSL-----DGSGAR--RRYSLNSVSKYYVPNKDGV-SLGPALQMIQDKV 125
LRLL S+S+++C + +G + R Y+ + KY++ + DG SL L ++ +V
Sbjct: 93 LRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQV 152
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
L++W++LKD ILEG F+ AH M FEY D +F+K F+ AM ++++M +LE Y
Sbjct: 153 ILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEY 212
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245
+GF ++ LVDVGG +G L ITSKYP+IKG+NFD V+ AP +P ++HV+GDMF
Sbjct: 213 RGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIE 272
Query: 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305
VPKGDAIF+KWILHDW DE C+K+LKNC+KS+PE GKVI+VE++ P P + + N+
Sbjct: 273 VPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMITPMEPKPN-DFSCNTV 331
Query: 306 I--DVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+ D+LM+TQ GGKER+ +F LA +GF ++ ++ V+EF+K
Sbjct: 332 LGMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEIICLSYSYSVIEFHK 381
|
|
| TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 156/352 (44%), Positives = 220/352 (62%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP--TKNKD 65
E +YA L+ +VLPM ++ +LG+F I+ ++GP SAS I + L TK
Sbjct: 2 EEQNLSSYAMILSSSSVLPMVLKTAIDLGLFDILAESGPS---SASQIFSLLSNETKKHH 58
Query: 66 APTMLDRILRLLASYSVVECSLDGSGAR--RRYSLNSVSKYYVPNKDGV-SLGPALQMIQ 122
++++RILR LASYS++ CS+ Y L V+KY+ N++G SL P + + Q
Sbjct: 59 DSSLVNRILRFLASYSILTCSVSTEHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLFQ 118
Query: 123 DKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNIL 182
DKV + W +LKD++LEGG+PFN HG A E D RF + F ++M + + L
Sbjct: 119 DKVVTDMWYNLKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEFL 178
Query: 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQPHVIEHAPLHPHIEHVAGD 241
++Y GF +K LVDVGG G L I SK+ +I K INFD P VI + P IEHVAGD
Sbjct: 179 KNYNGFDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGIEHVAGD 238
Query: 242 MFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301
MF + PKG+AIF+KW+LH WDD+HC+K+L NCY+S+P +GKVIVV++++PE P ++ +
Sbjct: 239 MFTNTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLDR 298
Query: 302 SNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
S ++ MM NP GKERTK EF LA AGFS ++ + F V+EF+K
Sbjct: 299 SLFQFELFMMNMNPSGKERTKKEFEILARLAGFSNVQVPFTSLCFSVLEFHK 350
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 166/362 (45%), Positives = 227/362 (62%)
Query: 4 IVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAK--LSASDIAAQLPT 61
+VD + + A +LA PM ++A ELG+F + A LS +IA++LPT
Sbjct: 18 VVDDDNELGLM-AVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPT 76
Query: 62 --KNKDAPTMLDRILRLLASYSVVEC--SLDGSGARRRYSLNSVSKYYVPNKDGVS-LGP 116
+N +AP +LDR+LRLLASYS+V+C +L G G R Y + ++++ KD + +G
Sbjct: 77 TPRNPEAPVLLDRMLRLLASYSMVKCGKALSGKG-ERVYRAEPICRFFL--KDNIQDIGS 133
Query: 117 -ALQMIQ--DKVFLESWSHLKDAILEGGIPFNRAHG-MHAFEYGRVDPRFNKHFNTAMYN 172
A Q+I D VFL +W+ LKD +LEGG F RAHG M F+Y D RF+K FN +
Sbjct: 134 LASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF- 192
Query: 173 HTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH 232
T ++ LE Y+GF +K LVDVGG +G TL +TSKYP IKGINFD + AP +
Sbjct: 193 -TIAVVKKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSY 251
Query: 233 PHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP- 291
P +EHVAGDMF VP GDA+ LK ILHDW DE C+K+LKNC+KS+PE+GKV+V+EL+ P
Sbjct: 252 PGVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPD 311
Query: 292 EVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEF 351
E N I + +D+LM TQ GGKER++ EF LA +GF+ + + W++EF
Sbjct: 312 EAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEF 371
Query: 352 YK 353
K
Sbjct: 372 CK 373
|
|
| TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 162/361 (44%), Positives = 224/361 (62%)
Query: 4 IVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQII--DKAGPGAKLSASDIAAQLPT 61
++D + + A +LA PM ++A ELG+F + + + + LS S+IA++LPT
Sbjct: 18 VIDDDNELGLM-AVRLANAAAFPMVLKAALELGVFDTLYAEASRSDSFLSPSEIASKLPT 76
Query: 62 --KNKDAPTMLDRILRLLASYSVVECSLDGSGARRR-YSLNSVSKYYVPNKDGVS-LGP- 116
+N +AP +LDR+LRLLASYSVV+C G R Y + ++++ KD + +G
Sbjct: 77 TPRNPEAPVLLDRMLRLLASYSVVKCGKVSEGKGERVYRAEPICRFFL--KDNIQDIGSL 134
Query: 117 ALQMIQ--DKVFLESWSHLKDAILEGGIPFNRAHG-MHAFEYGRVDPRFNKHFNTAMYNH 173
A Q+I D VFL +W+ LKD +LEGG F RAHG M F+Y D RF+K FN +
Sbjct: 135 ASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF-- 192
Query: 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHP 233
T ++ LE Y+GF + LVDVGG +G TL + SKYP IKGINFD + AP +P
Sbjct: 193 TIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYP 252
Query: 234 HIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP-E 292
+EHVAGDMF VP GDA+ LK ILHDW DE C+K+LKNC+KS+PE GKV+V+EL+ P E
Sbjct: 253 GVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVVVIELVTPDE 312
Query: 293 VPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
N I + +D+LM TQ GGKER++ EF LA +GF+ + + W++EF
Sbjct: 313 AENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFC 372
Query: 353 K 353
K
Sbjct: 373 K 373
|
|
| TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 160/359 (44%), Positives = 224/359 (62%)
Query: 4 IVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQII--DKAGPGAKLSASDIAAQLPT 61
+VD + + A +LA PM ++A ELG+F + + + + LS S+IA++LPT
Sbjct: 18 VVDDDNELGLM-AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPT 76
Query: 62 --KNKDAPTMLDRILRLLASYSVVECSLDGSGARRR-YSLNSVSKYYVPN--KDGVSLGP 116
+N AP +LDR+LRLLASYS+V+C G +R Y + ++++ N +D SL
Sbjct: 77 TPRNPGAPVLLDRMLRLLASYSMVKCEKVSVGKEQRVYRAEPICRFFLKNNIQDIGSLAS 136
Query: 117 ALQMIQDKVFLESWSHLKDAILEGGIPFNRAHG-MHAFEYGRVDPRFNKHFNTAMYNHTS 175
+ + D VFL +W+ LKD +LEGG F RAHG M F+Y D RF+K FN + T
Sbjct: 137 QVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQTGF--TI 194
Query: 176 LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHI 235
++ LE Y+GF + LVDVGG +G TL +TSKYP IKGINFD + AP +P +
Sbjct: 195 AVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPTYPGV 254
Query: 236 EHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP-EVP 294
EHVAGDMF VP G+A+ LK ILHDW DE C+K+LKNC+KS+P++GKV+V+EL+ P E
Sbjct: 255 EHVAGDMFVDVPTGNAMILKRILHDWTDEDCVKILKNCWKSLPQNGKVVVIELVTPDEAE 314
Query: 295 NTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
N I + +D+LM TQ GGKER++ EF LA +GFS + + W++EF K
Sbjct: 315 NGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFSHCQFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 161/350 (46%), Positives = 219/350 (62%)
Query: 16 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAK-LSASDIAAQLPTK--NKDAPTMLDR 72
A +LA PM ++A ELG+ I G G LS S+IA +LPTK N +AP +LDR
Sbjct: 29 ARRLANAAASPMVLKAALELGVIDTITTVGGGDLWLSPSEIALRLPTKPCNLEAPALLDR 88
Query: 73 ILRLLASYSVVECS--LDGSG----ARRRYSLNSVSKYYVPNKDGVSLGPALQMIQD--K 124
+LR L S+SV++C ++ +G R Y+ V KY + D VS A + D
Sbjct: 89 MLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVCKYLLNKSDDVSGSFASLFMLDLSD 148
Query: 125 VFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILES 184
VF+++W+HL+D ILEG F+ AHGM FEY + D RF K FN AM ++++ +L+
Sbjct: 149 VFIKTWTHLEDVILEGRDAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEKVLKF 208
Query: 185 YKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ 244
Y+GF ++K LVDVGG LG TL ITSKYP++ GINFD V+ +A +P + HVAGDMF
Sbjct: 209 YEGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANAHSYPGVNHVAGDMFI 268
Query: 245 SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP-EVPNTSIESKSN 303
+PKGDAIF+KWILHDW DE C+ +LKNC+KS+ E+GK+I+VE++ P E + I S
Sbjct: 269 KIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKSGDICSNIV 328
Query: 304 SHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+D+ M+TQ GGKER +EF LA +GFS F V+E YK
Sbjct: 329 FGMDMTMLTQCSGGKERDLYEFENLAYASGFSRCAIVCAVYPFSVIEIYK 378
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42653 | OMT2_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5516 | 0.9546 | 0.9825 | N/A | no |
| Q9XGV9 | COMT2_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5467 | 0.9858 | 0.9639 | N/A | no |
| Q9FQY8 | COMT1_CAPAN | 2, ., 1, ., 1, ., 6, 8 | 0.5730 | 0.9745 | 0.9582 | N/A | no |
| Q43609 | COMT1_PRUDU | 2, ., 1, ., 1, ., 6, 8 | 0.5804 | 0.9716 | 0.9397 | N/A | no |
| Q6T1F6 | BMT_AMMMJ | 2, ., 1, ., 1, ., 6, 9 | 0.5072 | 0.9745 | 0.9717 | N/A | no |
| P46484 | COMT1_EUCGU | 2, ., 1, ., 1, ., 6, 8 | 0.5632 | 0.9716 | 0.9371 | N/A | no |
| Q00763 | COMT1_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.5775 | 0.9716 | 0.9397 | N/A | no |
| Q84N28 | FOMT1_WHEAT | 2, ., 1, ., 1, ., - | 0.5057 | 0.9716 | 0.9527 | N/A | no |
| O82054 | COMT1_SACOF | 2, ., 1, ., 1, ., 6, 8 | 0.5100 | 0.9745 | 0.9502 | N/A | no |
| Q6ZD89 | OMT1_ORYSJ | 2, ., 1, ., 1, ., 7, 6 | 0.4885 | 0.9603 | 0.9211 | yes | no |
| Q43046 | COMT1_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.5775 | 0.9716 | 0.9397 | N/A | no |
| Q43047 | COMT3_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.5862 | 0.9716 | 0.9423 | N/A | no |
| A9X7L0 | ANMT_RUTGR | 2, ., 1, ., 1, ., 1, 1, 1 | 0.5497 | 0.9660 | 0.9368 | N/A | no |
| O23760 | COMT1_CLABR | 2, ., 1, ., 1, ., 6, 8 | 0.5726 | 0.9716 | 0.9270 | N/A | no |
| P59049 | OMT1_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5516 | 0.9546 | 0.9825 | N/A | no |
| Q6T1F5 | COMT1_AMMMJ | 2, ., 1, ., 1, ., 6, 8 | 0.5482 | 0.9886 | 0.9561 | N/A | no |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.5933 | 0.9263 | 0.9008 | yes | no |
| Q9SWC2 | COMT1_EUCGL | 2, ., 1, ., 1, ., 6, 8 | 0.5612 | 0.8696 | 0.9808 | N/A | no |
| Q9XGW0 | COMT1_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5552 | 0.9858 | 0.9639 | N/A | no |
| Q38J50 | FOMT2_WHEAT | 2, ., 1, ., 1, ., 1, 6, 9 | 0.5210 | 0.9971 | 0.9887 | N/A | no |
| O81646 | COMT1_CAPCH | 2, ., 1, ., 1, ., 6, 8 | 0.5555 | 0.9971 | 0.9805 | N/A | no |
| O04385 | IEMT_CLABR | 2, ., 1, ., 1, ., 1, 4, 6 | 0.5287 | 0.9745 | 0.9347 | N/A | no |
| Q8W013 | COMT1_CATRO | 2, ., 1, ., 1, ., 6, 8 | 0.5771 | 0.9773 | 0.9504 | N/A | no |
| A8J6X1 | BMT_GLELI | 2, ., 1, ., 1, ., 6, 9 | 0.5085 | 0.9801 | 0.9637 | N/A | no |
| Q43239 | COMT1_ZINEL | 2, ., 1, ., 1, ., 6, 8 | 0.5614 | 0.9886 | 0.9858 | N/A | no |
| Q8GU25 | COMT1_ROSCH | 2, ., 1, ., 1, ., 6, 8 | 0.5689 | 0.9716 | 0.9397 | N/A | no |
| Q41086 | COMT2_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.5775 | 0.9716 | 0.9423 | N/A | no |
| Q8LL87 | COMT1_COFCA | 2, ., 1, ., 1, ., 6, 8 | 0.5660 | 0.9773 | 0.9857 | N/A | no |
| P28002 | COMT1_MEDSA | 2, ., 1, ., 1, ., 6, 8 | 0.5632 | 0.9716 | 0.9397 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 353 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-110 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 4e-15 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 2e-09 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 321 bits (826), Expect = e-110
Identities = 120/238 (50%), Positives = 151/238 (63%), Gaps = 2/238 (0%)
Query: 93 RRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHA 152
Y L SK V +D SL P L M D LESW+HLKDA+ EGG PF RA GM
Sbjct: 4 GEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGMPF 63
Query: 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY 212
FEY DP FN+ FN AM H+ L+M ILE+ F+ + LVDVGG G AI Y
Sbjct: 64 FEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAY 123
Query: 213 PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKN 272
P+IKGI FD PHVI AP +E V GD F+SVP+ DAI LKW+LHDW DE C+K+LK
Sbjct: 124 PHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILKR 183
Query: 273 CYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330
CY+++P GKVIVVE++LPE P+ +E++ +D+ M+ N GKERT+ E+ L +
Sbjct: 184 CYEALPPGGKVIVVEMVLPEDPDDDLETEVL-LLDLNMLVLNG-GKERTEKEWRKLLS 239
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-15
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78
M ++ ELGI II K G LS S++A++LPT N +AP MLDR+LRLLA
Sbjct: 1 MVLKCAIELGIPDIIAKHG--KPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 2e-09
Identities = 26/145 (17%), Positives = 67/145 (46%), Gaps = 10/145 (6%)
Query: 161 RFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINF 220
R + + ++ + +L +K+++DVGG +G A+ +P +
Sbjct: 120 REDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL 179
Query: 221 DQPHVIE-------HAPLHPHIEHVAGDMF-QSVPKGDAIFLKWILHDWDDEHCLKLLKN 272
+ P I+ + + +A D++ +S P+ DA+ IL+ +++ + K
Sbjct: 180 NLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKK 239
Query: 273 CYKSVPEDGKVIVVELML--PEVPN 295
+ ++ G+++++++++ PE PN
Sbjct: 240 AFDAMRSGGRLLILDMVIDDPENPN 264
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.82 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.79 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.79 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.76 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.76 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.74 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.73 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.73 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.7 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.67 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.65 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.64 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.64 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.64 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.64 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.64 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.64 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.63 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.63 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.62 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.61 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.61 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.58 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.56 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.56 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.55 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.55 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.54 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.53 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.52 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.52 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.51 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.51 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.5 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.5 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.5 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.48 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.48 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.46 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.43 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.42 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.39 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.39 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.38 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.38 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.37 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.36 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.36 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.35 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.35 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.35 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.33 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.33 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.32 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.31 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.28 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.27 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.27 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.27 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.27 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.27 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.26 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.24 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.22 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.21 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.21 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.2 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.2 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.19 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.18 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.17 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.17 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.16 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.16 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.13 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.12 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.11 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.11 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.1 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.1 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.09 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.08 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.08 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.07 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.07 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.06 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.05 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.04 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.02 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.0 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.0 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.98 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.97 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.97 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.97 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.97 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.97 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.94 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.94 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.9 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.88 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.88 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.88 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.86 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.85 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.85 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.84 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.81 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.81 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.8 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.8 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.79 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.78 | |
| PLN02366 | 308 | spermidine synthase | 98.76 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.75 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.74 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.74 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.74 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.72 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.69 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.69 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.69 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.65 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.64 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.63 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.61 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.59 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.58 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.57 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.54 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.52 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.48 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.48 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.45 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.43 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.43 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.42 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.41 | |
| PLN02476 | 278 | O-methyltransferase | 98.41 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.38 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.36 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.34 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.27 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.26 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.26 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.25 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.24 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.22 | |
| PLN02823 | 336 | spermine synthase | 98.21 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.2 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.18 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.17 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.16 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.16 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.14 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.14 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.11 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.11 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.11 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.1 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.07 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.05 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.05 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.05 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.04 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.03 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.99 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.95 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.94 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.92 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.9 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.89 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.89 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.85 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.82 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.81 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.78 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.74 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.74 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.73 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.68 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.66 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.65 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.64 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.64 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.56 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.55 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.55 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.53 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.39 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.25 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.25 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.24 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.24 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.22 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.19 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 97.17 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.16 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.15 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.13 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.11 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 97.11 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.04 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.03 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.01 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 97.01 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.0 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.0 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.95 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.93 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.89 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.87 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.87 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.86 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.85 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.82 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.82 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.78 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.7 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.68 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.67 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.64 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.61 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.61 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 96.6 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.58 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.58 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.56 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.54 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.53 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.42 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.42 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.4 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 96.37 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.36 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.34 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.25 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 96.23 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.18 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 96.18 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.13 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 96.11 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.11 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 96.09 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 96.09 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 95.99 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.98 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.97 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 95.91 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.91 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 95.91 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.88 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.88 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.68 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 95.68 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.64 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 95.61 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 95.61 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 95.61 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 95.58 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 95.58 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.48 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 95.33 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.32 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.31 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 95.28 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.24 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 95.21 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 95.15 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.09 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 95.04 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.01 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.98 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 94.89 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 94.79 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 94.67 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 94.62 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.54 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 94.48 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.47 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 94.45 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 94.45 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 94.44 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.44 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 94.4 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 94.32 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 94.2 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 94.07 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 94.07 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.04 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 94.02 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 94.02 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.97 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 93.96 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 93.93 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 93.84 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 93.79 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.77 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.68 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 93.63 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 93.58 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 93.43 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 93.41 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.35 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 93.33 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.22 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.2 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 93.11 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 92.83 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 92.83 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 92.76 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 92.76 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 92.64 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 92.61 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 92.55 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 92.54 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 92.47 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 92.46 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 92.44 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 92.26 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 92.24 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 91.87 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.83 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 91.74 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 91.64 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 91.49 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 91.43 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 91.28 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 91.07 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 91.02 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 90.97 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 90.41 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.41 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 90.24 | |
| PRK05638 | 442 | threonine synthase; Validated | 89.92 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 89.87 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 89.82 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 89.73 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 89.34 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.28 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.25 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 89.11 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 88.88 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 88.82 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 88.52 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 88.44 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 88.4 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 88.13 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.98 | |
| COG1510 | 177 | Predicted transcriptional regulators [Transcriptio | 87.91 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 87.87 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 87.47 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 87.21 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 87.11 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 87.09 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 86.42 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 86.33 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 85.93 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 85.8 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 85.67 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 85.62 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 85.42 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 84.88 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 84.73 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 84.45 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 84.37 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 84.28 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 84.2 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 84.1 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 84.07 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 83.98 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 83.89 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 83.71 | |
| PRK09775 | 442 | putative DNA-binding transcriptional regulator; Pr | 83.63 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 83.26 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 83.24 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 82.46 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 82.25 | |
| PF12324 | 77 | HTH_15: Helix-turn-helix domain of alkylmercury ly | 82.05 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 82.02 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 81.93 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 81.93 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 81.71 | |
| PF05584 | 72 | Sulfolobus_pRN: Sulfolobus plasmid regulatory prot | 81.33 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 81.26 | |
| PF08784 | 102 | RPA_C: Replication protein A C terminal; InterPro: | 80.39 | |
| PF13404 | 42 | HTH_AsnC-type: AsnC-type helix-turn-helix domain; | 80.19 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 80.08 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=319.82 Aligned_cols=338 Identities=50% Similarity=0.842 Sum_probs=303.0
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCC-CCCCCcCcHHHHHHHHhcccceeee
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPT-KNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++......++++++++..++++.+|+|+||||.|.+++ + ..|+|..+.. ++|..+.+++|+||.|++.+++++.
T Consensus 2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~ 76 (342)
T KOG3178|consen 2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCR 76 (342)
T ss_pred chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceee
Confidence 45566788999999999999999999999999999963 2 7888888874 4778999999999999999999998
Q ss_pred ccCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHH
Q 018576 87 LDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHF 166 (353)
Q Consensus 87 ~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (353)
...+ . .|.+++.++.++.+.+..++.+++.....+..++.|..+.++++.++.++...+|..+++|...+......+
T Consensus 77 ~~~~--~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~ 153 (342)
T KOG3178|consen 77 LVGG--E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDF 153 (342)
T ss_pred eecc--e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHH
Confidence 4322 3 899999999888666667899999888889999999999999999999999999977899998888778899
Q ss_pred HHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-CCeeEEeCCCCCC
Q 018576 167 NTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-PHIEHVAGDMFQS 245 (353)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~rv~~~~~d~~~~ 245 (353)
++.|...+....+.+++.+.+++.....+|||+|.|..+..++..||+++++.+|+|.+++.+... +.|+.+.+|++..
T Consensus 154 ~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 154 NGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD 233 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc
Confidence 999999999988889998888888999999999999999999999999999999999999999988 8999999999999
Q ss_pred CCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC-CCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE-VPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 246 ~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
.|++|+|++.++||+|+|++|.++|++++..|+|+|.+++.|.+.|. ..............|..|+..+.+|++|+.+|
T Consensus 234 ~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e 313 (342)
T KOG3178|consen 234 TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKE 313 (342)
T ss_pred CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHH
Confidence 99999999999999999999999999999999999999999998875 33222234566778889998887799999999
Q ss_pred HHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 325 FMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|+.++.++||.+..+...+..+++|+++|
T Consensus 314 ~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 314 FQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999886
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=296.80 Aligned_cols=289 Identities=16% Similarity=0.288 Sum_probs=212.9
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
...+|++|+++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++. ++.|+||+.+..
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~------~~~y~~t~~~~~ 68 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE------DGKWSLTEFADY 68 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec------CCcEecchhHHh
Confidence 4579999999999999988 49999999999999 999999999999999999975 588999999998
Q ss_pred ccCCCCCC---ChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHH-hchhhhHHH
Q 018576 105 YVPNKDGV---SLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMY-NHTSLIMSN 180 (353)
Q Consensus 105 l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~ 180 (353)
++.+.++. ++.++..+. .......|.+|.++++. .+++...++ +....++. ..|...|. .......+.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~ 140 (306)
T TIGR02716 69 MFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAIQL 140 (306)
T ss_pred hccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHHHH
Confidence 77765532 122333332 11223568899999984 444432221 21212222 23444443 333334455
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEE
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAI 252 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i 252 (353)
+.+.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.++++ +|++++.+|+++ ++|.+|+|
T Consensus 141 l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 141 LLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV 219 (306)
T ss_pred HHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence 666666 778899999999999999999999999999999998888776542 689999999987 67767999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh--CCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ--NPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~t~~~~~~ll~ 330 (353)
++++++|+|+++.+.++|++++++|+|||+++|.|...++...+. .....+..+... ..-...++.++|.++|+
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~ 295 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN----FDYLSHYILGAGMPFSVLGFKEQARYKEILE 295 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch----hhHHHHHHHHcccccccccCCCHHHHHHHHH
Confidence 999999999988889999999999999999999998776532211 111111111000 00112345799999999
Q ss_pred hcCCceeeEe
Q 018576 331 GAGFSGIRSD 340 (353)
Q Consensus 331 ~aGf~~v~~~ 340 (353)
++||+.++++
T Consensus 296 ~aGf~~v~~~ 305 (306)
T TIGR02716 296 SLGYKDVTMV 305 (306)
T ss_pred HcCCCeeEec
Confidence 9999988754
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=289.12 Aligned_cols=236 Identities=33% Similarity=0.618 Sum_probs=206.6
Q ss_pred ccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHh
Q 018576 93 RRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYN 172 (353)
Q Consensus 93 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 172 (353)
+++|+||+.|+.|+.+++..++..++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.++++....|+.+|..
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 68999999999999998866788888776789999999999999999999999999988999999999999999999999
Q ss_pred chhhhH-HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCCCCcE
Q 018576 173 HTSLIM-SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDA 251 (353)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~ 251 (353)
.+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.+|+
T Consensus 83 ~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~ 161 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADV 161 (241)
T ss_dssp HHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESE
T ss_pred hhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccc
Confidence 888776 77778887 8888999999999999999999999999999999999999888889999999999998888999
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCC--CEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPED--GKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pg--G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+++++||+|+++++.++|++++++|+|| |+|+|+|.+.++....+........+|+.|++++ +|++||.+||++||
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll 240 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALL 240 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHH
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHh
Confidence 99999999999999999999999999999 9999999999887555432222357899999987 79999999999998
Q ss_pred H
Q 018576 330 T 330 (353)
Q Consensus 330 ~ 330 (353)
+
T Consensus 241 ~ 241 (241)
T PF00891_consen 241 K 241 (241)
T ss_dssp H
T ss_pred C
Confidence 5
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=153.61 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=119.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
..++.+|||||||||.++..+++..+..+++++|. +.|++.++++ ..|+|+.+|+.. |+|++ |+|++++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34689999999999999999999999999999999 8899988764 228999999999 99986 99999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhC----C------------CCccc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQN----P------------GGKER 320 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~------------~g~~~ 320 (353)
|++++| ..++|++++|+|||||++++.|...|..+.... ....+.+. .+... . .-...
T Consensus 129 lrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHH---HHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 999986 469999999999999999999998876532211 11111111 11111 0 01224
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCce
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGNF 346 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~~ 346 (353)
+.+++.++++++||+.+.......+.
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~ 229 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGI 229 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeee
Confidence 78999999999999998866665443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=151.32 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=115.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC--cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
..+..+|||||||+|.++..+++.+ |+.+++++|+ ++|++.++++ ++++++++|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999999886 6789999999 7888877532 478999999988 77764 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccc-cchhh--h-hhCCC-----------Cc
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH-IDVLM--M-TQNPG-----------GK 318 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~-----------g~ 318 (353)
+.+++|++++. .++|++++++|||||++++.|...+...... ....+ +...+ . ..... ..
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999998764 6899999999999999999998765431100 00000 00000 0 00000 12
Q ss_pred ccCHHHHHHHHHhcCCceeeEeeeCCceE
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLVTGNFW 347 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~~~~~~ 347 (353)
..+.+++.++++++||+.++......+..
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 46899999999999999998887765544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-20 Score=159.69 Aligned_cols=155 Identities=20% Similarity=0.299 Sum_probs=81.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~ 256 (353)
..++.+|||||||||.++..+++.. |+.+++++|. +.|++.++++ .+|+++++|+.+ |++++ |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5567899999999999999999986 6789999999 8899888753 589999999998 88876 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh----hhhhCCC-----------CcccC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL----MMTQNPG-----------GKERT 321 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------g~~~t 321 (353)
.||+++|. .++|++++|+|||||+++|+|...|..+... ..+...+... -.....+ ....+
T Consensus 125 glrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH--HHHHH--------------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhh--ceeeeeecccccccccccccccccccccccccccccc
Confidence 99999874 5899999999999999999999887642110 0000000000 0000000 11236
Q ss_pred HHHHHHHHHhcCCceeeEeeeCCce
Q 018576 322 KHEFMTLATGAGFSGIRSDLVTGNF 346 (353)
Q Consensus 322 ~~~~~~ll~~aGf~~v~~~~~~~~~ 346 (353)
.+++.++++++||+.++..+...+.
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~ 225 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGI 225 (233)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 8899999999999999988876553
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=147.68 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=119.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-- 249 (353)
...+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .+++.+..+|+.+ ++|.+
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 345677676 7788999999999999999998875 679999999 677776654 3579999999987 77754
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++++++.++..++|++++++|||||++++.+.......... . .... ... .......+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~--~---~~~~--~~~-~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD--E---EFKA--YIK-KRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH--H---HHHH--HHH-hcCCCCCCHHHHHHHH
Confidence 999999998888766778999999999999999999998664421111 0 0000 111 1122346889999999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||+.++.....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999887754
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=152.85 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=113.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i~~~~~ 257 (353)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ .+++++.+|+.+ +.+..|+|++.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999974 7899999999 7888877642 468999999987 6665699999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhh-----------------hhCCCCccc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMM-----------------TQNPGGKER 320 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~g~~~ 320 (353)
+|++++++...+|++++++|+|||.+++.|...+++..... . ...++.. .........
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH--L---LIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH--H---HHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99998877889999999999999999999987655322110 0 0010000 000012356
Q ss_pred CHHHHHHHHHhcCCceeeEeee
Q 018576 321 TKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
|.+++.++++++||+.+++...
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHH
Confidence 8999999999999998765443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=137.34 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=111.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC------CeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY------IKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~- 249 (353)
.....++|||+||||..+..+++..+. .++++.|+ |+|++.++++ .++.++++|..+ |+|.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 445689999999999999999998877 78999999 8999877553 459999999999 99976
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccch---------------hhhhh
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDV---------------LMMTQ 313 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 313 (353)
|+|++.+-+.+|++. .+.|++++|+|||||++.+.|+-.-+.....+... ..+++. .++..
T Consensus 178 ~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~iagd~~sYqYLve 254 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIAGDRKSYQYLVE 254 (296)
T ss_pred ceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhhhhHhhhhhHHh
Confidence 999999999999885 69999999999999999999986544211110000 001111 01110
Q ss_pred CCCCcccCHHHHHHHHHhcCCceee
Q 018576 314 NPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 314 ~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
. =.+..+.+++..+.++|||+.+.
T Consensus 255 S-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 255 S-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred h-hhcCCCHHHHHHHHHHcCCcccc
Confidence 0 01234789999999999999887
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=143.97 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=121.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 249 (353)
.++..+. ..++.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 3455555 6667899999999999999999986 6789999999 777776653 2579999999987 66654
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh----h-----------
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT----Q----------- 313 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~----~----------- 313 (353)
|+|++.+++|++++. .++|+++.++|+|||++++.+...+...... ......+...+-. .
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIPGFK--QLYFFYFKYIMPLFGKLFAKSYKEYSWLQ 190 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCChHHH--HHHHHHHcChhHHhhHHhcCCHHHHHHHH
Confidence 999999999988764 5899999999999999999987654321100 0000000000000 0
Q ss_pred CCCCcccCHHHHHHHHHhcCCceeeEeeeC-CceEEEEEeC
Q 018576 314 NPGGKERTKHEFMTLATGAGFSGIRSDLVT-GNFWVMEFYK 353 (353)
Q Consensus 314 ~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~-~~~~vi~~~~ 353 (353)
.......+.+++.++|+++||+.+++.... +..+++..+|
T Consensus 191 ~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 191 ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 001123578999999999999999988876 5666777665
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=143.89 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=110.0
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCC-C-cEEEec
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPK-G-DAIFLK 255 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~-~-D~i~~~ 255 (353)
..+++.++ ...+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++++.+|+.+..+. . |+|+++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEEe
Confidence 46677676 66778999999999999999999999999999999 7888888764 689999998763333 3 999999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccc---ccccchh-hhhhCCCCcccCHHHHHHHHHh
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS---NSHIDVL-MMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
.+||++++. .+++++++++|+|||++++........+........ ..+.... ...........+.+++.++|++
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD 174 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence 999998764 689999999999999999874321111000000000 0010000 0000001234589999999999
Q ss_pred cCCcee
Q 018576 332 AGFSGI 337 (353)
Q Consensus 332 aGf~~v 337 (353)
+||++.
T Consensus 175 aGf~v~ 180 (255)
T PRK14103 175 AGCKVD 180 (255)
T ss_pred CCCeEE
Confidence 999854
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.6e-18 Score=148.14 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHH--CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSK--YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i~~~~~ 257 (353)
.+..+|||||||+|..+..+++. .|+.+++++|. +.+++.++++ .+++++++|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 45689999999999999999884 58999999999 8899887653 379999999987 5555699999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-----------hh-hhCCC-CcccCHHH
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-----------MM-TQNPG-GKERTKHE 324 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~-g~~~t~~~ 324 (353)
+|++++++..+++++++++|+|||.+++.|....+....... ....+.... .. ....+ -...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999987777899999999999999999999776544222100 000000000 00 00001 12348999
Q ss_pred HHHHHHhcCCceeeEe
Q 018576 325 FMTLATGAGFSGIRSD 340 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~ 340 (353)
..++|+++||+.+.++
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999977653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=147.70 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=110.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999988 679999999 6677665431 579999999987 67655 99999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC--ccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT--SIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
+|++++. .++|++++++|||||+++|.+......... .........++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 9999764 689999999999999999998765322111 000000011111111101 12235899999999999999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-16 Score=141.30 Aligned_cols=140 Identities=24% Similarity=0.328 Sum_probs=110.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
....+|||||||+|.++..+++.++..+++++|. +++++.+++. .+++++.+|+.+ +++.+ |+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3467999999999999999999988889999999 7788877653 578999999987 66654 999999999999
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++. .++|++++++|+|||++++.+...+... ... ...+.++ ...+.+++.++|+++||+.+++..
T Consensus 192 ~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDP--QRGIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCH--HHHHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEE
Confidence 875 4789999999999999999876543310 000 0111111 125789999999999999998877
Q ss_pred eC
Q 018576 342 VT 343 (353)
Q Consensus 342 ~~ 343 (353)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 64
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=129.00 Aligned_cols=183 Identities=14% Similarity=0.187 Sum_probs=130.6
Q ss_pred HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCC
Q 018576 166 FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMF 243 (353)
Q Consensus 166 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~ 243 (353)
|.+.-...+++ ..+++..++ .....+|+|+|||+|..+..|++++|...++|+|. ++|++.|+++ ++++|..+|+.
T Consensus 8 Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 8 YLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred HHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 44444444454 457888888 88899999999999999999999999999999998 8999988765 89999999998
Q ss_pred CCCCC--CcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC---CCCc
Q 018576 244 QSVPK--GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN---PGGK 318 (353)
Q Consensus 244 ~~~p~--~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~ 318 (353)
+-.|+ .|+++++-+||.++|. .++|.++...|.|||.|.+.-+-.-+.++............+...... ....
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~ 163 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAP 163 (257)
T ss_pred hcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCC
Confidence 85553 4999999999988765 699999999999999999976543332221100000000001111000 0234
Q ss_pred ccCHHHHHHHHHhcCCceeeE------eeeCCceEEEEEeC
Q 018576 319 ERTKHEFMTLATGAGFSGIRS------DLVTGNFWVMEFYK 353 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~------~~~~~~~~vi~~~~ 353 (353)
..+...|-++|...+=+ +.+ +++++..+|+++.|
T Consensus 164 v~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 164 LPSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred CCCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 45889999999888733 333 33457778888765
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=130.53 Aligned_cols=168 Identities=18% Similarity=0.232 Sum_probs=118.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
.++..+. ..+..+|||||||+|.++..+++.+| ..+++++|. +.+++.+++. .++.++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 3444444 44568999999999999999999997 789999998 6666665542 468999999987 44433
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhh----hhCCC-------
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMM----TQNPG------- 316 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------- 316 (353)
|+|++.+++|++++ ...+|+++++.|+|||++++.+...+...... .........+. ....+
T Consensus 121 ~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 99999999999875 46899999999999999999998765432100 00000000000 00000
Q ss_pred -----CcccCHHHHHHHHHhcCCceeeEeeeC-CceEEEEEeC
Q 018576 317 -----GKERTKHEFMTLATGAGFSGIRSDLVT-GNFWVMEFYK 353 (353)
Q Consensus 317 -----g~~~t~~~~~~ll~~aGf~~v~~~~~~-~~~~vi~~~~ 353 (353)
...++.++|.++|+++||+.+++.... +...++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578899999999999999998865 4456666654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=145.35 Aligned_cols=152 Identities=14% Similarity=0.255 Sum_probs=116.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~- 249 (353)
.+.+++.+. ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.++++ .++.+..+|+.. ++|.+
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 345666665 6667899999999999999999876 679999999 6777766542 479999999987 66654
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++..+++++++. .++|++++++|+|||++++.+.......... . .... .. ..+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~--~~-~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEY--IK-QRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHH--HH-hcCCCCCCHHHHHHH
Confidence 999999999998764 5899999999999999999998754321111 0 1111 11 113456789999999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
++++||+++.+...
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999877654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=131.90 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=127.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
.+.+++.+. +.++.+|||||||.|.+++..+++| +++++++++ ++..+.++++ .++++.-.|..+..+.-
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 456778887 9999999999999999999999999 899999999 5566655542 47888888876522224
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|-|++...++++..+....+++++++.|+|||++++.....+..+.. ...++..--.+|+|..++..++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999889999999999999999999999887664321 22333333446899999999999999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
.++||++..+....
T Consensus 212 ~~~~~~v~~~~~~~ 225 (283)
T COG2230 212 SEAGFVVLDVESLR 225 (283)
T ss_pred HhcCcEEehHhhhc
Confidence 99999988776554
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=126.68 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=106.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~- 249 (353)
+.+++.++ ...+.+|||+|||+|..+..++++ +.+++++|. +.+++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 45555555 555689999999999999999986 569999999 7777766542 458888899876 55555
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++|++++++...++++++++|+|||++++++...+++.... .. -...++.+++.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VG--------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CC--------CCCccCHHHHHHHh
Confidence 999999999998877889999999999999999887776544321100 00 01235788899988
Q ss_pred HhcCCceeeE
Q 018576 330 TGAGFSGIRS 339 (353)
Q Consensus 330 ~~aGf~~v~~ 339 (353)
+ ||+.++.
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 7 8988765
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=130.93 Aligned_cols=137 Identities=15% Similarity=0.247 Sum_probs=107.0
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-CCCCC-cEEEeccccccC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDW 261 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~ 261 (353)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+.. |+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 666666654 2578999999876 55555 999999999998
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++ ...+|++++++|+|||++++.+...+...... .. .. .....+.++|.++++++||+.++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~-----~~-~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIE--------HE-----ET-TSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCcccc--------cc-----cc-ccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 75 46999999999999999999987533211000 00 00 12245789999999999999998877
Q ss_pred eCC
Q 018576 342 VTG 344 (353)
Q Consensus 342 ~~~ 344 (353)
...
T Consensus 145 ~~~ 147 (224)
T smart00828 145 ASL 147 (224)
T ss_pred CcH
Confidence 643
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-15 Score=134.15 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=107.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC-------CCCCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP-------LHPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~rv~~~~~d~~~-~~p~~- 249 (353)
.+...++ .-.+.+|||||||+|.++..+++..+. +++++|. +.++..++ ...+++++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3444454 334689999999999999999998765 6999998 44443221 13579999999877 55444
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..+|||..+. ..+|+++++.|+|||.+++.+...+......... ......+.. .-..+|.+++.++|
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~~---~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMRN---VYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCcc---ceeCCCHHHHHHHH
Confidence 999999999997654 6899999999999999998776655432211000 000000000 01245889999999
Q ss_pred HhcCCceeeEeee
Q 018576 330 TGAGFSGIRSDLV 342 (353)
Q Consensus 330 ~~aGf~~v~~~~~ 342 (353)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.5e-15 Score=132.33 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=106.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC-------CCCCCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA-------PLHPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~p~~- 249 (353)
.++..+. ...+.+|||||||+|.++..++...+. +++++|. +.++..+ ....++.+...++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4555444 445689999999999999999887654 7999998 5455432 123578888888765 33334
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..+|||+.+. ..+|++++++|+|||.|++.+...+........ .......|.. .-...+.+++.++|
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~---p~~ry~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLV---PKDRYAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccC---chHHHHhccc---cccCCCHHHHHHHH
Confidence 999999999998764 689999999999999999988765432111000 0000000100 11235889999999
Q ss_pred HhcCCceeeEeee
Q 018576 330 TGAGFSGIRSDLV 342 (353)
Q Consensus 330 ~~aGf~~v~~~~~ 342 (353)
+++||+.+++...
T Consensus 262 ~~aGF~~V~i~~~ 274 (314)
T TIGR00452 262 EKVGFENFRILDV 274 (314)
T ss_pred HHCCCeEEEEEec
Confidence 9999999987754
|
Known examples to date are restricted to the proteobacteria. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-16 Score=119.59 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=82.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCC-CC-CCCCC-cEEEecc-cc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDM-FQ-SVPKG-DAIFLKW-IL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~-~~-~~p~~-D~i~~~~-~L 258 (353)
+.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++++|+ .. ..++. |+|++.. ++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57999999999999999999999999999999 778876654 37999999999 33 33444 9999999 66
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 259 HDWDD-EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 259 h~~~~-~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65443 567899999999999999999875
|
... |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=126.37 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=118.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG--D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 250 (353)
.++..+. ..++.+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444444 446789999999999999999999987 79999998 666666544 2578999999987 55543 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC----------C----
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP----------G---- 316 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---- 316 (353)
+|++.+++|+.++ ...+++++++.|+|||++++.+...+..... ....+..+....+ +
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALL------KKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhh------HHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 9999999998765 5689999999999999999998865432110 0011111000000 0
Q ss_pred -----CcccCHHHHHHHHHhcCCceeeEeeeCCc-eEEEEEeC
Q 018576 317 -----GKERTKHEFMTLATGAGFSGIRSDLVTGN-FWVMEFYK 353 (353)
Q Consensus 317 -----g~~~t~~~~~~ll~~aGf~~v~~~~~~~~-~~vi~~~~ 353 (353)
....+.++|.++|+++||+.+++.+...+ ..+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 11347889999999999999999988766 44555543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-15 Score=132.47 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=111.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 249 (353)
...+++.+. +.++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+ ++..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPGK 127 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCCC
Confidence 456777777 8889999999999999999999998 789999998 445554432 2679999999865 3335
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|.|++...+.++.......+++++.+.|+|||++++...+.+...... ......++.....+|+|...+.+++...
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 999999999999888889999999999999999999888775531110 0000113333333689999999999999
Q ss_pred HHhcCCceeeEeeeC
Q 018576 329 ATGAGFSGIRSDLVT 343 (353)
Q Consensus 329 l~~aGf~~v~~~~~~ 343 (353)
++++||++..+...+
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999998887654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-15 Score=137.98 Aligned_cols=143 Identities=12% Similarity=0.086 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
++.+|||||||+|.++..+++ ++.+++++|. +++++.++++ .++.++.+|+.+ +.+.+ |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 3679999999 7788877643 378999999876 44443 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhCCC-----CcccCHHHHHHHHHhc
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQNPG-----GKERTKHEFMTLATGA 332 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----g~~~t~~~~~~ll~~a 332 (353)
||+.+. ..+|++++++|||||.+++.+...... . ......... ..-+.+. .+.++.+++.++|+++
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~---~---~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR---A---YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH---H---HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 999875 589999999999999999987643210 0 000000000 0000111 2357899999999999
Q ss_pred CCceeeEeee
Q 018576 333 GFSGIRSDLV 342 (353)
Q Consensus 333 Gf~~v~~~~~ 342 (353)
||+++++..+
T Consensus 281 Gf~i~~~~G~ 290 (322)
T PLN02396 281 SVDVKEMAGF 290 (322)
T ss_pred CCeEEEEeee
Confidence 9999887543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=131.43 Aligned_cols=145 Identities=17% Similarity=0.282 Sum_probs=109.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~ 256 (353)
..++.+|||||||+|..+..+++.. ++.+++++|. +.+++.++++ ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5567899999999999888877765 6678999999 7788877652 588999999987 66654 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
++|++++. .++|++++++|||||++++.+....... .. . ...+..+...+ .+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~---~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL-PE---E--IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC-CH---H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 99987653 5899999999999999999998754321 10 0 11122222111 244568899999999999998
Q ss_pred eeEee
Q 018576 337 IRSDL 341 (353)
Q Consensus 337 v~~~~ 341 (353)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87644
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=128.37 Aligned_cols=106 Identities=22% Similarity=0.348 Sum_probs=90.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCCCCC-CC-cEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQSVP-KG-DAIF 253 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p-~~-D~i~ 253 (353)
...++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ +++.++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 446677666 67788999999999999999999999999999999 7888888765 679999999876333 34 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
++.+||++++. .++|++++++|+|||.+++.
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 99999988764 58999999999999999886
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-14 Score=127.08 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=111.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-- 249 (353)
.+.+.+. ..++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.++++ .++++...|+.. +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3455555 6778899999999999999999998 7889999999 6666666542 578999999876 55543
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc-cccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++.+++|++++. ..++++++++|+|||++++.+.......... ...........+.- . .....+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--H-FADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--c-CCCCcHHHHHHHH
Confidence 999999999998764 6899999999999999999886432110000 00000111111110 1 2233456789999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
++++||+.+++...
T Consensus 164 l~~aGf~~~~~~~~ 177 (241)
T PRK08317 164 FREAGLTDIEVEPY 177 (241)
T ss_pred HHHcCCCceeEEEE
Confidence 99999998766443
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-15 Score=142.71 Aligned_cols=141 Identities=21% Similarity=0.276 Sum_probs=106.9
Q ss_pred ChhhhcccCchHHHHHHHHHHhchhhh--HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh
Q 018576 151 HAFEYGRVDPRFNKHFNTAMYNHTSLI--MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE 227 (353)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 227 (353)
.+|+++...++..++|...|....... .......++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++
T Consensus 378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe 456 (677)
T PRK06922 378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVID 456 (677)
T ss_pred HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 568888887777777776554322211 111122233 55678999999999999999999999999999999 66787
Q ss_pred hCCCC-----CCeeEEeCCCCC-C--CCCC--cEEEeccccccC-----------CchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 228 HAPLH-----PHIEHVAGDMFQ-S--VPKG--DAIFLKWILHDW-----------DDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 228 ~a~~~-----~rv~~~~~d~~~-~--~p~~--D~i~~~~~Lh~~-----------~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.+++. .+++++++|..+ + ++.+ |+|+++.++|+| ++.+..++|++++++|||||++++.
T Consensus 457 ~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 457 TLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 77542 467888899876 3 4443 999999999976 2456789999999999999999999
Q ss_pred eeecCC
Q 018576 287 ELMLPE 292 (353)
Q Consensus 287 e~~~~~ 292 (353)
|.+.++
T Consensus 537 D~v~~E 542 (677)
T PRK06922 537 DGIMTE 542 (677)
T ss_pred eCccCC
Confidence 976554
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=122.28 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=96.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCC-C-cEEEeccccccCCc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPK-G-DAIFLKWILHDWDD 263 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~-~-D~i~~~~~Lh~~~~ 263 (353)
.....+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +.+. . |+|++..+||++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 35678999999999999999966533 9999999 667766 233333332223 2333 3 99999999999985
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
...+|+++++.|+|||++++.++...... ......+ ...... ......++.++|+++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~~----~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDPS----PRSFLKW-RYDRPY-GGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSHH----HHHHHHC-CGTCHH-TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcchh----hhHHHhc-CCcCcc-CceeccCCHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999998753210 0001111 111110 0134568999999999999999875
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=129.22 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=107.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC--CCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ--SVPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~~p~- 248 (353)
.+++.++ .++.+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++++|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555554 45679999999999999999987 468999999 7888877652 578999999865 2333
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc-cccccccc-cchh---hhhhCCCCcccCH
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNSH-IDVL---MMTQNPGGKERTK 322 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~-~~~~---~~~~~~~g~~~t~ 322 (353)
. |+|++..+||+++++ .++|+++.++|+|||++++............ ....+... ..+. -.... -....+.
T Consensus 112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 3 999999999998765 5899999999999999998765422100000 00000000 0000 00000 1223578
Q ss_pred HHHHHHHHhcCCceeeEeeeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~ 343 (353)
+++.++|+++||+++.+.-+.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEE
Confidence 999999999999998765543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-14 Score=124.72 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=86.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchH----HHHHHHHHCC-----CCeEEEecc-hHHHhhCCCC----------------
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGV----TLQAITSKYP-----YIKGINFDQ-PHVIEHAPLH---------------- 232 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~---------------- 232 (353)
+.+....+ ...+.+|+|+|||||. +++.+++.+| +.+++++|+ +.+++.|++.
T Consensus 89 p~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 89 PLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLA 167 (264)
T ss_pred HHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHh
Confidence 34443332 3456899999999996 5666666655 578999999 7888877752
Q ss_pred -----------------CCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 233 -----------------PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 233 -----------------~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.+|+|..+|+.+ +.+.+ |+|++.++||+++++...+++++++++|+|||+|++-..
T Consensus 168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999988 44443 999999999999988888999999999999999998543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-14 Score=119.09 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=103.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 250 (353)
..+.+.+. ...+.+|||+|||+|..+..++++ +.+++++|. +.+++.+++. -.+++...|+.. +.+.. |
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 34555555 445689999999999999999985 579999999 7777765432 136777778765 44444 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|+++.++|+++.+....++++++++|+|||++++++....+.... .. +.....+.+++.++|.
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------~~--------~~~~~~~~~el~~~f~ 160 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------HM--------PFSFTFKEDELRQYYA 160 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------CC--------CcCccCCHHHHHHHhC
Confidence 9999999999987778899999999999999988877653321000 00 0122467889999886
Q ss_pred hcCCceeeEe
Q 018576 331 GAGFSGIRSD 340 (353)
Q Consensus 331 ~aGf~~v~~~ 340 (353)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 58877665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-15 Score=109.78 Aligned_cols=88 Identities=20% Similarity=0.363 Sum_probs=75.8
Q ss_pred EEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHH
Q 018576 195 VDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 195 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~ 267 (353)
||||||+|..+..+++. +..+++++|. +.+++.+++. .++.+..+|+.+ +++++ |+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999999 8899999999 6677776653 567799999988 78765 999999999998 4467
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018576 268 KLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~i 285 (353)
+++++++|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-14 Score=115.50 Aligned_cols=177 Identities=16% Similarity=0.126 Sum_probs=118.3
Q ss_pred HHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCe
Q 018576 163 NKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHI 235 (353)
Q Consensus 163 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv 235 (353)
...|++.|.++.+.....+- .+-+.+....||+||||||..-... .--|..++|.+|. +.|.+.+.+ +.++
T Consensus 50 t~~yne~~~~ykrelFs~i~-~~~gk~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIY-YFLGKSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHhcccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 45677777776554433332 2332455678899999999873222 1125678999998 666655433 2556
Q ss_pred e-EEeCCCCC-C-CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh
Q 018576 236 E-HVAGDMFQ-S-VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM 310 (353)
Q Consensus 236 ~-~~~~d~~~-~-~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 310 (353)
. |+.++..+ + ++++ |.|++..+|+-.. +.++.|++++++|||||+++++|+...+...... .+....+...
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~--i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNR--ILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHH--HHHHHhchhh
Confidence 6 88888877 4 5655 9999999998754 4689999999999999999999998776533211 1122223222
Q ss_pred hhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceE
Q 018576 311 MTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFW 347 (353)
Q Consensus 311 ~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~ 347 (353)
...+ .|...|++.|+. |++|-|+..+......+..
T Consensus 204 ~~~~-dGC~ltrd~~e~-Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 204 HLES-DGCVLTRDTGEL-LEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred heec-cceEEehhHHHH-hhhcccccchhhcccCCce
Confidence 2222 577778877765 7889999988776654443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=120.25 Aligned_cols=144 Identities=16% Similarity=0.125 Sum_probs=101.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCC-C-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSK----YPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPK-G-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~-~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++. .++.+...+... +.+. . |+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 346689999999999998888764 45679999999 8888887764 456666665443 3333 3 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh------CCC-----CcccCHHHH
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ------NPG-----GKERTKHEF 325 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----g~~~t~~~~ 325 (353)
+||++++++..++|++++++++ |.+++.+...+... . .......... ..+ -+.++.+++
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~-------~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA-------Y-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH-------H-HHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999998878899999999998 67777766543210 0 0000000000 001 134689999
Q ss_pred HHHHHhcCCceeeEeee
Q 018576 326 MTLATGAGFSGIRSDLV 342 (353)
Q Consensus 326 ~~ll~~aGf~~v~~~~~ 342 (353)
.+++++ ||++....+.
T Consensus 208 ~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 208 AALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHhhC-CCeEEeccce
Confidence 999999 9998877665
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=118.42 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
.+.+|||||||||.++..+++.+ +.+++++|. ++|++.+++. ..++++|+.+ |++++ |+|++.++||++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 36799999999999999999987 579999999 8899988764 3567888887 77765 999999999998764
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh---hhhhCCCC-------------cccCHHHHHHHH
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL---MMTQNPGG-------------KERTKHEFMTLA 329 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------~~~t~~~~~~ll 329 (353)
.++|++++++||| .+.++|...|+...... ....++... +...+ ++ ...+.+++.+++
T Consensus 127 -~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~--~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 127 -EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRK--YLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred -HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHH--HHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6899999999999 35566665544211000 000111100 00011 11 123789999999
Q ss_pred HhcCCceeeEeeeCCceE-EEEEe
Q 018576 330 TGAGFSGIRSDLVTGNFW-VMEFY 352 (353)
Q Consensus 330 ~~aGf~~v~~~~~~~~~~-vi~~~ 352 (353)
+++| ..++......+.. +...+
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEe
Confidence 9984 6677777765543 44443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=119.99 Aligned_cols=145 Identities=13% Similarity=0.155 Sum_probs=105.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAI 252 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i 252 (353)
...+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ +.+++.++++ ..+.++.+|+.+ +++++ |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445556565 445689999999999999888764 578999999 8888888764 446789999987 66654 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh--CCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ--NPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~t~~~~~~ll~ 330 (353)
+++.++|+.++ ...+|++++++|+|||.+++.......-+ .+...+.... .......+.++|.+++.
T Consensus 108 ~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---------el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP---------ELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH---------HHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 99999997655 46899999999999999999876533210 0111111100 00233468899999999
Q ss_pred hcCCce
Q 018576 331 GAGFSG 336 (353)
Q Consensus 331 ~aGf~~ 336 (353)
..|++.
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888764
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-15 Score=111.89 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=59.9
Q ss_pred EEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C---CeeEEeCCCCCCCC-CC-cEEEeccccccCC
Q 018576 195 VDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P---HIEHVAGDMFQSVP-KG-DAIFLKWILHDWD 262 (353)
Q Consensus 195 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~---rv~~~~~d~~~~~p-~~-D~i~~~~~Lh~~~ 262 (353)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ . ++++...|.....+ +. |+|++.++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999999999999999999 7888888775 2 23444444444223 34 999999999999
Q ss_pred chHHHHHHHHHHHhCCCCCEE
Q 018576 263 DEHCLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l 283 (353)
++...+|+++++.|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 44579999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=118.12 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCCCC--cEEEeccccccCCc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~ 263 (353)
.+.+|||||||+|.++..+++.+|..+++++|. +.++..+++. +++.++.+|+.+ +++.. |+|++.+++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999999 6677666543 578999999987 55544 99999999998765
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
..++|++++++|+|||.+++.++..... ......... . .....+.++|.++++++ |+.+.+.
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~---------~~~~~~~~~--~-~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFSTFGPGTL---------HELRQSFGQ--H-GLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEeCCccCH---------HHHHHHHHH--h-ccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4689999999999999999986543221 001111100 1 33456888999999988 8876543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-14 Score=115.65 Aligned_cols=139 Identities=23% Similarity=0.262 Sum_probs=99.6
Q ss_pred CCCCeEEEEcCCchHHHHHHH-HHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-C--CCCC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAIT-SKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-S--VPKG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~-D~i~~~~ 256 (353)
.+..+|||+|||+|.++..++ +.+|+.+++++|. +.+++.+++ .++++|.++|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5578999999999 888888765 2689999999998 4 3334 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
++|++.+. ..+|+++.+.|+|+|.+++.+.......... ...... ...........+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQ-LEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHH-HHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHH-HHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99998765 5889999999999999999998732110000 000000 0011111111112 6779999999998
|
... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-13 Score=110.41 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=118.2
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecchH-H---Hhh-CC--CCCCee-EEeCCCCCC-CC---------CC-cEEE
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-V---IEH-AP--LHPHIE-HVAGDMFQS-VP---------KG-DAIF 253 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~---~~~-a~--~~~rv~-~~~~d~~~~-~p---------~~-D~i~ 253 (353)
+|||||||||..+..+++.+|+++..--|... . |+. .. ..+++. -+..|+.++ .| .. |+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999999999987777622 1 211 11 123332 234455442 22 23 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+.+++|-.+...+..+++.+.++|+|||.|++.-++..+..-. ......+|.......+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t---s~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT---SESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC---CcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999887654211 1222345554444334566789999999999999
Q ss_pred CceeeEeeeCCceEEEEEeC
Q 018576 334 FSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 334 f~~v~~~~~~~~~~vi~~~~ 353 (353)
++.++.+.++...-++.++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998888888776
|
The function of this family is unknown. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=113.77 Aligned_cols=136 Identities=14% Similarity=0.111 Sum_probs=95.4
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh----hCCCCCCeeEEeCCCCCC-----CCCC-cEE
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE----HAPLHPHIEHVAGDMFQS-----VPKG-DAI 252 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~-----~p~~-D~i 252 (353)
.++ ..++.+|||+|||+|.++..+++..+..+++++|. +.+++ .+++.+++.++.+|...+ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 355 67788999999999999999999988678999999 65555 445557899999998653 2333 888
Q ss_pred EeccccccCCch-HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 253 FLKWILHDWDDE-HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 253 ~~~~~Lh~~~~~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
++ +.+++ ....+|++++++|||||+++|.-...+. |+.. ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~--------------d~~~-----~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSI--------------DVTK-----DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecccc--------------cCcC-----CHH-HHHHHHHHHHHH
Confidence 74 33332 3346799999999999999995221110 0000 001 112445699999
Q ss_pred cCCceeeEeeeCCc
Q 018576 332 AGFSGIRSDLVTGN 345 (353)
Q Consensus 332 aGf~~v~~~~~~~~ 345 (353)
+||+.++......+
T Consensus 201 aGF~~i~~~~l~p~ 214 (226)
T PRK04266 201 GGFEILEVVDLEPY 214 (226)
T ss_pred cCCeEEEEEcCCCC
Confidence 99999998887533
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=125.30 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=114.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCCCCCCC-cEEE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQSVPKG-DAIF 253 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p~~-D~i~ 253 (353)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.++++ ..+++...|+.+ .+.. |+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence 34556665 6777899999999999999999876 579999999 7788776653 247788888754 2333 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+..++++.++.....++++++++|+|||++++.+...+...... ..+++.. .+|+|...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence 99999998877778999999999999999999887654321110 1111111 146777888999888766 58
Q ss_pred CceeeEeeeCC
Q 018576 334 FSGIRSDLVTG 344 (353)
Q Consensus 334 f~~v~~~~~~~ 344 (353)
|.+..+...+.
T Consensus 305 ~~v~d~~~~~~ 315 (383)
T PRK11705 305 FVMEDWHNFGA 315 (383)
T ss_pred cEEEEEecChh
Confidence 99887765543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=131.44 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=109.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC---CCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ---SVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~---~~p~~ 249 (353)
...+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.+++ .+++.++++|+.. ++|.+
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345566665 4456799999999999999999875 48999998 777776543 2578999999864 45544
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++++..++|++++++|+|||++++.|.+........ . . ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999988889999999999999999999997654321100 0 0 00122356789999
Q ss_pred HHHhcCCceee
Q 018576 328 LATGAGFSGIR 338 (353)
Q Consensus 328 ll~~aGf~~v~ 338 (353)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=113.40 Aligned_cols=124 Identities=16% Similarity=0.294 Sum_probs=95.9
Q ss_pred HhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEe
Q 018576 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFL 254 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~ 254 (353)
..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|...+.+.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 56778999999999999999999999999999999 7777766542 56899999875545544 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
....++ ...+++++++.|+|||++++..... .+.+++.+++++.||
T Consensus 104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCGV 149 (187)
T ss_pred CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCCC
Confidence 876543 3578999999999999998754321 124567789999999
Q ss_pred ceeeEee
Q 018576 335 SGIRSDL 341 (353)
Q Consensus 335 ~~v~~~~ 341 (353)
+.+++..
T Consensus 150 ~~~~~~~ 156 (187)
T PRK08287 150 SELDCVQ 156 (187)
T ss_pred CcceEEE
Confidence 8776544
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-13 Score=115.57 Aligned_cols=146 Identities=13% Similarity=0.078 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCCcEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKGDAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~~~~~Lh~ 260 (353)
....+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++.+..+|+.+....-|+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45689999999999999999886 458999998 7788777642 3789999998763222399999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh--hCCCCcccCHHHHHHHHHhcCCceee
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT--QNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
++.+....+++++++.+++++.+.+.. .... . .....+.-.... ..+.-..++.+++.++++++||+++.
T Consensus 132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 203 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKERVIFTFAP----KTAW---L-AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVR 203 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECC----CchH---H-HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeee
Confidence 987778899999999988765544321 1100 0 000000000000 00012245889999999999999998
Q ss_pred EeeeCC
Q 018576 339 SDLVTG 344 (353)
Q Consensus 339 ~~~~~~ 344 (353)
......
T Consensus 204 ~~~~~~ 209 (219)
T TIGR02021 204 EGLVST 209 (219)
T ss_pred eecccc
Confidence 876543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=115.80 Aligned_cols=103 Identities=18% Similarity=0.414 Sum_probs=88.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCCCCCCC--cEEEeccccccCCc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQSVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~~~~ 263 (353)
..++.+|||||||+|.++..+++..|..+++++|+ +.+++.|++ .+++.+..+|+.++++.+ |+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34567999999999999999999889999999999 789998877 477889999988766554 99999999999987
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
++..++++++++++ +++++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 77889999999997 4789988886544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=120.40 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
.++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. -++++...|+.. .+++. |+|++..+||+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999885 579999999 6677765432 368888888876 44444 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
++++....++++++++|+|||++++++....+....+ .+....++.+++.++++ +|++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~--~~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ--DWEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC--CCEEEEEe
Confidence 9877889999999999999999888766543321100 01122467889999996 48887764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=109.66 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~ 261 (353)
.++.+|||+|||+|.++..+++..+ +++++|. +.+++.++++ .+++++.+|..+..+.. |+|+++..+|..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999998 7777766542 35788999987643334 999999888766
Q ss_pred Cch-------------------HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 262 DDE-------------------HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 262 ~~~-------------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
++. -..++|+++.++|+|||++++++.... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~ 146 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GE 146 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------Ch
Confidence 532 135789999999999999999875321 14
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.++.+++++.||+...+...+.++-.+.++|
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 5678899999999988888887777777664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-14 Score=107.24 Aligned_cols=88 Identities=24% Similarity=0.418 Sum_probs=73.1
Q ss_pred EEEEcCCchHHHHHHHHHC---CCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEec-ccccc
Q 018576 194 LVDVGGNLGVTLQAITSKY---PYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLK-WILHD 260 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~-~~Lh~ 260 (353)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++. .++++++.|+.+ ++..+ |+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 7788877653 479999999987 54443 999995 55999
Q ss_pred CCchHHHHHHHHHHHhCCCCC
Q 018576 261 WDDEHCLKLLKNCYKSVPEDG 281 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG 281 (353)
+++++..++|+++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=116.88 Aligned_cols=96 Identities=13% Similarity=0.252 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-----C--CeeEEeCCCCCC--CCC-----C-cEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-----P--HIEHVAGDMFQS--VPK-----G-DAI 252 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~--rv~~~~~d~~~~--~p~-----~-D~i 252 (353)
++.+|||+|||+|..+..|++..+ ..+++++|+ ++|++.++++ + +|.++++|+.+. ++. . .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 457899999999999999999987 589999999 6777666432 3 366789999762 332 2 356
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
++..+++++++++..++|++++++|+|||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 667899999988999999999999999999986
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-13 Score=110.90 Aligned_cols=145 Identities=21% Similarity=0.267 Sum_probs=107.0
Q ss_pred CeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-----CCCCC--cEEEecc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-----SVPKG--DAIFLKW 256 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-----~~p~~--D~i~~~~ 256 (353)
.+||+||||.|....-+++..|+ +++...|. |..++..+++ .++.....|+.. +.+.+ |+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999988 89999998 7788877665 456666666654 22234 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCC---cccCHHHHHHHHHhcC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGG---KERTKHEFMTLATGAG 333 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~t~~~~~~ll~~aG 333 (353)
+|..++.+....++++++++|||||.|++-|....+-.... .. ....++....+-. +| ..++.+++..++.++|
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRG-DGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh-cc-CCceeecceEEcc-CCceeeeccHHHHHHHHHhcc
Confidence 99999999999999999999999999999987653321000 00 0112222222211 23 2368999999999999
Q ss_pred CceeeE
Q 018576 334 FSGIRS 339 (353)
Q Consensus 334 f~~v~~ 339 (353)
|..++.
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 987764
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-13 Score=115.24 Aligned_cols=143 Identities=20% Similarity=0.193 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC---C--eeEEeCCCCC-CCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP---H--IEHVAGDMFQ-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~---r--v~~~~~d~~~-~~p~~--D~i~~~~~Lh~ 260 (353)
.+.+|||||||.|.++..+++. +.+++++|. +..++.|+.+. . +++.+...++ ....+ |+|+|..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4689999999999999999998 489999999 77899888762 2 3455555544 22223 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhCCCC-----cccCHHHHHHHHHhcCC
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQNPGG-----KERTKHEFMTLATGAGF 334 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g-----~~~t~~~~~~ll~~aGf 334 (353)
.++++ .+++++.+.+||||.+++........ ......+... .+-+.|.| +...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 98864 79999999999999999988753321 0111111110 01112333 34568899999999998
Q ss_pred ceeeEeee
Q 018576 335 SGIRSDLV 342 (353)
Q Consensus 335 ~~v~~~~~ 342 (353)
.......+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 87766543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=110.50 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=98.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-cEEEeccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG-DAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh 259 (353)
.+..+|||||||+|.++..+++.. .+++++|. +.+++.+++. +++++..+|+... ... |+|++..++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-LGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-cCCcCEEEEcchhh
Confidence 456799999999999999999875 46999998 7777777642 4789999995322 233 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
+++++....+++++.+.+++++. +.... ..+.. ........... ..........+.++|.++++++||++.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~-i~~~~---~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLI-FTFAP---YTPLL---ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEE-EEECC---ccHHH---HHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 89988888999999997754443 32211 11000 00000000000 0000122345789999999999999998
Q ss_pred EeeeCC
Q 018576 339 SDLVTG 344 (353)
Q Consensus 339 ~~~~~~ 344 (353)
+.+...
T Consensus 212 ~~~~~~ 217 (230)
T PRK07580 212 TERISS 217 (230)
T ss_pred eeeccc
Confidence 877653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=114.29 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCchHHHH-H-HHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC--CC-cEEEe
Q 018576 189 ANIKQLVDVGGNLGVTLQ-A-ITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP--KG-DAIFL 254 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~-~-l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p--~~-D~i~~ 254 (353)
.++.+|+|||||.|.++. - +++.+|+.+++++|. +++++.|++. ++++|..+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 367999999999774433 3 335679999999999 7777766542 579999999987332 33 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. +||+|+.++..++|++++++|+|||.+++--
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999976777899999999999999999854
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-11 Score=114.56 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=85.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCCCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQSVPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~~p~- 248 (353)
-+++.++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.+++. .++++...|.++..+.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 3556666 33346999999999999999999999999999999 5667666531 3689999998875544
Q ss_pred C-cEEEecccccc---CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHD---WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~---~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|+++-.+|. +++....++++.++++|+|||.|+++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 99999877664 445556799999999999999999984
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-12 Score=104.21 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC-cEEEeccccccC
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDW 261 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~ 261 (353)
+.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ ..... |+|++.. +|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 68999999999999999999899999999999 566654432 2579999999977 32233 9998876 543
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
...+++.+++.|+|||++++..
T Consensus 121 ----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 ----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 3467888999999999999763
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=111.56 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=84.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DAI 252 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~i 252 (353)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. -..+++..|.+...++. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3445454 33346899999999999999999999999999999 6677766542 23567788887655444 999
Q ss_pred EeccccccC---CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILHDW---DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh~~---~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+++..+|.. ......++++++.+.|+|||.|+|+-.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999863 234567999999999999999998765
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=107.01 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=102.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHH------HhhCC-CCCCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHV------IEHAP-LHPHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~------~~~a~-~~~rv~~~~~d~~~-~~p~~ 249 (353)
..+...++.+ .+.+|||||||.|.++..++++-|. .++|+|. +.. ++..- ...++.+...-+.+ +....
T Consensus 105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 3455555423 4689999999999999999998553 7999997 221 22222 12334444333333 32233
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++-.||+|..++ ...|+.+++.|+|||.|++-..+.+.+........ ..+--|.. .-...|...+..|
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m~n---v~FiPs~~~L~~w 254 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKMRN---VWFIPSVAALKNW 254 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCCCc---eEEeCCHHHHHHH
Confidence 999999999997664 68999999999999999998887765432211110 00101100 1234689999999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
++++||+.++++..
T Consensus 255 l~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 255 LERAGFKDVRCVDV 268 (315)
T ss_pred HHHcCCceEEEecC
Confidence 99999999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=106.78 Aligned_cols=135 Identities=17% Similarity=0.245 Sum_probs=95.5
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCCCCCC--cEEEecc
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQSVPKG--DAIFLKW 256 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~~--D~i~~~~ 256 (353)
.++ -....+++|+|||.|.++..|+.++ -+.+++|. +..++.|++ .++|+++..|+....|.+ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 455 5566899999999999999999986 37899998 777887765 378999999998877765 9999999
Q ss_pred ccccCCc-hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 257 ILHDWDD-EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 257 ~Lh~~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
++|++++ ++...+++++.++|+|||.|++...-.. ...- -|...-.+.+.++|++. |+
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-----------------~c~~---wgh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-----------------NCRR---WGHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-----------------HHHH---TT-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-----------------cccc---cCcccchHHHHHHHHHH-hh
Confidence 9999986 5788999999999999999999765210 0000 13334577788888863 44
Q ss_pred eeeEeee
Q 018576 336 GIRSDLV 342 (353)
Q Consensus 336 ~v~~~~~ 342 (353)
.++...+
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 4444443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-13 Score=112.40 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=103.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------C----CeeEEeCCCCCCCCCCcEEEeccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------P----HIEHVAGDMFQSVPKGDAIFLKWI 257 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----rv~~~~~d~~~~~p~~D~i~~~~~ 257 (353)
+.+|||||||+|-++..|++. +.+++++|. +.+++.|+++ . |+++...|.....+.-|+|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 478999999999999999997 479999999 7889888765 2 356666666553434599999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc-chhhhhhCCCC-----cccCHHHHHHHHHh
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI-DVLMMTQNPGG-----KERTKHEFMTLATG 331 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-----~~~t~~~~~~ll~~ 331 (353)
++|..|. ..+++.+.+.|+|+|+|+|.+....-... ....++ +..... .|.| +..+.++..+++..
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~-----~~~i~~~E~vl~i-vp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSF-----AGTIFLAEIVLRI-VPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHh-----hccccHHHHHHHh-cCCCCcCHHHcCCHHHHHHHHHh
Confidence 9998654 69999999999999999999875433110 000111 111121 2222 34589999999999
Q ss_pred cCCceeeEee
Q 018576 332 AGFSGIRSDL 341 (353)
Q Consensus 332 aGf~~v~~~~ 341 (353)
+|+++..+..
T Consensus 240 ~~~~v~~v~G 249 (282)
T KOG1270|consen 240 NGAQVNDVVG 249 (282)
T ss_pred cCcchhhhhc
Confidence 9998876643
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-12 Score=109.48 Aligned_cols=145 Identities=18% Similarity=0.094 Sum_probs=97.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-C-CC-CC-cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-S-VP-KG-DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~-~p-~~-D~i~~~~~L 258 (353)
.+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++++...|+.+ + .+ .. |+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45689999999999999988875 468999998 5666665532 356777777755 2 12 23 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh--hC--CCCcccCHHHHHHHHHhcCC
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT--QN--PGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~g~~~t~~~~~~ll~~aGf 334 (353)
++.++. ..+|+++.+.|+|||++++........ ........ ....... .. ......+.++|.++++++||
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVG-AEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCCH--HHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhh-HHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 988754 588999999999999999876431110 00000000 0000000 00 01234578999999999999
Q ss_pred ceeeEee
Q 018576 335 SGIRSDL 341 (353)
Q Consensus 335 ~~v~~~~ 341 (353)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9987754
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-11 Score=101.94 Aligned_cols=131 Identities=12% Similarity=0.091 Sum_probs=97.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------------CCCCeeEEeCCCCC-CCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------------LHPHIEHVAGDMFQ-SVP- 247 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~~p- 247 (353)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. +..+|++.++|+++ +..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 789999999 56666531 12468999999988 321
Q ss_pred -CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHH
Q 018576 248 -KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEF 325 (353)
Q Consensus 248 -~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 325 (353)
.. |.|+-..++|+++.+.....++.+.++|+|||++++.....++.... . -....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 22 99999999999998888899999999999999988877654321100 0 0123678889
Q ss_pred HHHHHhcCCceeeEe
Q 018576 326 MTLATGAGFSGIRSD 340 (353)
Q Consensus 326 ~~ll~~aGf~~v~~~ 340 (353)
.++|.. +|.+....
T Consensus 173 ~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 173 EALYGG-HYEIELLE 186 (213)
T ss_pred HHHhcC-CceEEEEe
Confidence 998863 55554443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=105.19 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=96.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCC-CCCCC-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~-D 250 (353)
..+...++ .-++.++||+|||.|..+..|+++ +..++++|. +..++.+++ .-.|+....|+.+ .+++. |
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 34555566 556789999999999999999998 789999998 445554432 2348899999987 66666 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++..+++++..+...++++++.+.++|||++++...+..++...+ .. ....+...|+.+.++
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~--------~~--------~~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCP--------SP--------FPFLLKPGELREYYA 160 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--S--------S----------S--B-TTHHHHHTT
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCC--------CC--------CCcccCHHHHHHHhC
Confidence 99999999999988899999999999999999998766432221000 00 112345667888774
Q ss_pred hcCCceeeE
Q 018576 331 GAGFSGIRS 339 (353)
Q Consensus 331 ~aGf~~v~~ 339 (353)
||++++.
T Consensus 161 --dW~il~y 167 (192)
T PF03848_consen 161 --DWEILKY 167 (192)
T ss_dssp --TSEEEEE
T ss_pred --CCeEEEE
Confidence 6887654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=112.44 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCCCCCCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQSVPKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~~~p~~-D~i~~~~ 256 (353)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++|...|+.. ++.. |+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcC
Confidence 4579999999999999999986 578999999 7788766543 246788888753 3333 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC------CcccCHHHHHHHHH
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG------GKERTKHEFMTLAT 330 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~t~~~~~~ll~ 330 (353)
+|||++++....+++.+.+ +.+| .++|.. .+... ....+... ...+++ ....+.++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~--~p~~~-------~~~~l~~~-g~~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEK-RLIISF--APKTL-------YYDILKRI-GELFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCC-EEEEEe--CCcch-------HHHHHHHH-HhhcCCCCcCceeeeCCHHHHHHHHH
Confidence 9999988777778888875 4554 444432 12110 00000000 000111 12347999999999
Q ss_pred hcCCceeeEeeeC
Q 018576 331 GAGFSGIRSDLVT 343 (353)
Q Consensus 331 ~aGf~~v~~~~~~ 343 (353)
++||++.+..-..
T Consensus 289 ~AGf~v~~~~~~~ 301 (315)
T PLN02585 289 KAGWKVARREMTA 301 (315)
T ss_pred HCCCEEEEEEEee
Confidence 9999987655443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=102.70 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++. ++++++.+|+.+ +..+. |+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 478999999999999999999999999999999 6777766542 459999999877 33223 99998752
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.....+++.+++.|+|||++++.+
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 124689999999999999999875
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-11 Score=93.79 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=78.3
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCC---CCCC-
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQS---VPKG- 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~~- 249 (353)
++..+. .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|.... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444444 55567999999999999999999999999999998 666766543 25788888887641 2233
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++....+ ...++++++++.|+|||++++.-
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999876543 24589999999999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-10 Score=100.29 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecch-H----HHhhCCCCCCeeEEeCCCCCCC-----CCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQP-H----VIEHAPLHPHIEHVAGDMFQSV-----PKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~----~~~~a~~~~rv~~~~~d~~~~~-----p~~-D~i~~~ 255 (353)
+.+..+|||+|||+|.++..+++.. +.-+++.+|+. . +++.++.+++|.++..|+..+. .+. |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999987 45689999983 2 6677766688999999986532 123 999887
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
... + ++...++.++++.|||||+++|....... +. .+....+-.++. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~i--------------d~-----g~~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCI--------------DS-----TAKPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEecccc--------------cc-----CCCHHHHHHHHH-HHHHHcCCc
Confidence 642 2 23456778999999999999994221111 00 001111112344 889999999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
.++++.+.
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 98887765
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=102.57 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~ 260 (353)
...+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++. ..++++..|.++..+. . |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 578999999999999999999999999999998 6677766542 3389999999986663 3 99999988886
Q ss_pred CCc---hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDD---EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~---~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-.+ +-..++++.+.+.|+|||.++++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 2467999999999999999987554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=104.82 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~ 260 (353)
+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.++++.. |+|+++-..+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446999999999999999999999999999998 7777766542 46999999998765543 99998643332
Q ss_pred ------CCchH------------------HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 261 ------WDDEH------------------CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 261 ------~~~~~------------------~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
+.... ...+++++.+.|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 22111 24789999999999999887320
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....+++.++|+++||+.+++...
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeC
Confidence 012457889999999998877654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=99.46 Aligned_cols=133 Identities=13% Similarity=0.092 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------------CCCCeeEEeCCCCCCCCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------------LHPHIEHVAGDMFQSVPK 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~~~p~ 248 (353)
..+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++.++|+++..+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345679999999999999999985 789999999 55566431 125689999999983222
Q ss_pred ---C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 249 ---G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 249 ---~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
. |+|+-.-++|+++.+...++++.+.++|+|||+++++....++.... . .....+.++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHH
Confidence 2 99999999999998888999999999999999876665554332100 0 012367899
Q ss_pred HHHHHHhcCCceeeEee
Q 018576 325 FMTLATGAGFSGIRSDL 341 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~ 341 (353)
+.+++.. +|.+.....
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9998863 366554443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=105.04 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCC-CC-C--CCCC--cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDM-FQ-S--VPKG--DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~-~~-~--~p~~--D~i~~~~ 256 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +++++.+++ ..++.++.+|+ .. + ++.+ |+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 777776654 25799999998 43 3 4443 9999876
Q ss_pred ccccCC------chHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHDWD------DEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~~~------~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..+... ......+|++++++|+|||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543211 1113689999999999999999865
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=106.14 Aligned_cols=142 Identities=17% Similarity=0.117 Sum_probs=97.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCC--CC-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVP--KG-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p--~~-D~i~~~~~L 258 (353)
.+.+|||+|||+|.++..+++.. .+++++|. +.+++.+++. .++++...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999988864 46999998 6666665542 258888888765 322 33 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhh-hhCC-----CCcccCHHHHHHHHHhc
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMM-TQNP-----GGKERTKHEFMTLATGA 332 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~g~~~t~~~~~~ll~~a 332 (353)
|+..+. ..+|+++++.|+|||.+++.....+.. . .........+. ...+ .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998654 589999999999999999876532110 0 00000000000 0000 11234788999999999
Q ss_pred CCceeeEee
Q 018576 333 GFSGIRSDL 341 (353)
Q Consensus 333 Gf~~v~~~~ 341 (353)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999987753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=99.30 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=80.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC---------CCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS---------VPK 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p~ 248 (353)
.++.+.+.-+.++.+|||||||+|.++..+++.. +..+++++|+.++. ..+++.++++|+.++ .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3455555423567899999999999999999987 45799999995532 235799999999872 333
Q ss_pred C--cEEEeccccccCCchH---------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G--DAIFLKWILHDWDDEH---------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~---------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ |+|++..+.|...... ...+|+.++++|+|||.+++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 9999987776544321 24689999999999999999654
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=101.17 Aligned_cols=137 Identities=19% Similarity=0.323 Sum_probs=95.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCC-eeEEeCCCCCCCCC--C-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPH-IEHVAGDMFQSVPK--G-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~r-v~~~~~d~~~~~p~--~-D~i~~~~~Lh 259 (353)
...+.||.|+|.|..+..++..+ --++-.+|. +..++.|++ ..+ .++.+.-+.+-.|+ . |+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999886644 236777776 666776662 234 34555544442343 3 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
|++|++..++|++++++|+|+|.++|-|.+..... ..+|-. .+.-.|+.+.|+++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDEE-----DSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEETT-----TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCCc-----cCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876431 122211 1345689999999999999999876
Q ss_pred ee
Q 018576 340 DL 341 (353)
Q Consensus 340 ~~ 341 (353)
..
T Consensus 200 ~~ 201 (218)
T PF05891_consen 200 EK 201 (218)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=99.84 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=85.6
Q ss_pred EEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 218 INFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 218 ~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
+++|. ++|++.|+++ .+++++.+|+.+ +++.+ |+|++.+++|++++ ..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence 47888 7888877432 369999999988 77664 99999999999875 4699999999999999999
Q ss_pred EEeeecCCCCCCccccccccc-cchhhhhhCCC-----------CcccCHHHHHHHHHhcCCceeeEeeeCCc
Q 018576 285 VVELMLPEVPNTSIESKSNSH-IDVLMMTQNPG-----------GKERTKHEFMTLATGAGFSGIRSDLVTGN 345 (353)
Q Consensus 285 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------g~~~t~~~~~~ll~~aGf~~v~~~~~~~~ 345 (353)
|.|...++..-......+... .-......... ....+.+++.++|+++||+.++......+
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 999876542110000000000 00000000000 12358899999999999999988777644
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-10 Score=100.85 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=96.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~L 258 (353)
..+..+|||+|||+|..+..++..+|..+++++|. +.+++.+++. .++.++.+|++++.+. . |+|+++...
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 44567999999999999999999999999999998 6666665532 5799999999876553 3 999885322
Q ss_pred cc------CCc------------------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC
Q 018576 259 HD------WDD------------------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN 314 (353)
Q Consensus 259 h~------~~~------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (353)
.. +.. +...++++++.+.|+|||++++ +..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC-------------------------
Confidence 11 111 1235789999999999999987 210
Q ss_pred CCCcccCHHHHHHHHHhcCCceeeEee-eCCceEEEEEe
Q 018576 315 PGGKERTKHEFMTLATGAGFSGIRSDL-VTGNFWVMEFY 352 (353)
Q Consensus 315 ~~g~~~t~~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~ 352 (353)
. ...+++.+++++.||+.+++.. ..+...++.++
T Consensus 240 --~--~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 --Y--DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred --c--hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0 1134688999999998777643 33444444443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-11 Score=101.89 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-C---CCCC--cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-S---VPKG--DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~---~p~~--D~i~~~~ 256 (353)
...+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|+.+ + .+.+ |.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 667766643 2579999999975 2 4443 8888776
Q ss_pred ccccCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 257 ILHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
..+ |+... ...++++++++|+|||.|++...
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 543 22211 14789999999999999988664
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.5e-11 Score=105.77 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC---CeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY---IKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
...+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++. +++.+..+|..+ +++.+ |+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 4578999999999999999998874 37899999 7788877654 779999999887 77654 999876431
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
..+++++++|+|||+++++.+
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeC
Confidence 236789999999999999764
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=97.28 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEEEeccccccCCc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i~~~~~Lh~~~~ 263 (353)
+..+|||||||+|.++..+++.. ..+++++|. +++++.+++ .+++++.+|+.+ +++.. |+|+++.+||++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 45799999999999998887753 567899998 677777654 358888888865 24433 99999999999876
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-ccc-c-ccc--cccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT-SIE-S-KSN--SHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~-~-~~~--~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
..++|+++.+.+++ +++.-+........ ... . ... ..+...... .+.....+.+++.++++++||++++
T Consensus 91 --~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 91 --PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred --HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCCCEEEE
Confidence 45789988877553 33332111000000 000 0 000 000000000 0123456899999999999999988
Q ss_pred Eeee
Q 018576 339 SDLV 342 (353)
Q Consensus 339 ~~~~ 342 (353)
....
T Consensus 165 ~~~~ 168 (194)
T TIGR02081 165 RAAF 168 (194)
T ss_pred EEEe
Confidence 7665
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-09 Score=96.74 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=86.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D 250 (353)
+-+++.++ .....+|||+|||.|..++.+++.+|+.+++.+|. ...++.++++ .+..+...|.+++..+. |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 45677777 55455999999999999999999999999999999 4557777653 23356777887765555 9
Q ss_pred EEEeccccccCC---chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 251 AIFLKWILHDWD---DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 251 ~i~~~~~Lh~~~---~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.|+++--+|.-- ..-..++++...++|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999999732 22234899999999999999999765
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.2e-10 Score=92.64 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=100.3
Q ss_pred hhcccCchHHHHHHHHHHh----chhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhC
Q 018576 154 EYGRVDPRFNKHFNTAMYN----HTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHA 229 (353)
Q Consensus 154 ~~~~~~~~~~~~~~~~m~~----~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 229 (353)
+.+.++|+....|+.+.+. +-.-.+..+++.+...+....|.|+|||.+.++..+.. ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC----
Confidence 3455666666666555543 33345666777666445568999999999998865532 357888887221
Q ss_pred CCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc
Q 018576 230 PLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306 (353)
Q Consensus 230 ~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (353)
+-..+..|+.. |++.+ |++++...|-. .+...+|+++.|.|||||.|.|.|....
T Consensus 105 ----n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 ----NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp ----STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred ----CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 22467788877 88766 99999988865 4478999999999999999999997421
Q ss_pred chhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 307 DVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 307 ~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+ -..+++.+.++..||+..........+-+.+++|
T Consensus 163 -------f-----~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 -------F-----ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred -------C-----cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 1 1356788899999999988766667777777764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=92.66 Aligned_cols=123 Identities=16% Similarity=0.238 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CC-eeEEeCCCCCCCCC-C-cEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PH-IEHVAGDMFQSVPK-G-DAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~r-v~~~~~d~~~~~p~-~-D~i~~~~~ 257 (353)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. ++ +.++.+|+.++++. . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 679999999 6777766432 22 88999998875554 3 99988755
Q ss_pred cccCC-------------------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 258 LHDWD-------------------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 258 Lh~~~-------------------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
++... ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43211 1224578999999999999988754210
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
...+++.+++.++||++..+...
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeec
Confidence 12356788999999988766443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-10 Score=90.74 Aligned_cols=101 Identities=19% Similarity=0.258 Sum_probs=81.4
Q ss_pred HHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCC---CCCCcE
Q 018576 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQS---VPKGDA 251 (353)
Q Consensus 182 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~~D~ 251 (353)
+..+. +.++.+++|||||||..+.+++...|..+++.+|. ++.++..++ .++++.+.+|..+. .|..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 44555 77889999999999999999999899999999998 556554443 28899999998773 333499
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
||+...- . ...+|..+...|+|||+|++.-..
T Consensus 106 iFIGGg~-~-----i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG-N-----IEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC-C-----HHHHHHHHHHHcCcCCeEEEEeec
Confidence 9999773 2 468899999999999999985543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=97.94 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=76.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC--
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-- 248 (353)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +++++.++++ .+++++.+|..+.++.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 4455554 56678999999999999999998874 568999999 6777766542 3589999999874432
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|++..++++++ +++.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 3 9999998887654 35778999999998754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=96.93 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCCcEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKGDAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~~~~~Lh~ 260 (353)
.++.+|||||||+|.++..+++..+ .+++++|. +.+++.++++ .++.+..+|. ..|+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4578999999999999988776543 47999999 7778777653 2233333221 2299887633
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
.+....+++++.++|+|||++++..... ...+++.+.+++.||+.+++.
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 2335688999999999999999875421 124567889999999999888
Q ss_pred eeCCceEEEEE
Q 018576 341 LVTGNFWVMEF 351 (353)
Q Consensus 341 ~~~~~~~vi~~ 351 (353)
..+...+++--
T Consensus 238 ~~~~W~~~~~~ 248 (250)
T PRK00517 238 ERGEWVALVGK 248 (250)
T ss_pred EeCCEEEEEEE
Confidence 87766666543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=97.59 Aligned_cols=96 Identities=19% Similarity=0.325 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccc--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWI-- 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~-- 257 (353)
++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|++++++. . |+|+++--
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 7777776642 4799999999876654 3 99998621
Q ss_pred -----------cccCCc----------hHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 -----------LHDWDD----------EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 -----------Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++.+. .....+++++.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111 1236889999999999999875
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-09 Score=91.60 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCC------CCC-eeEEeCCCCCC--C----CCCcEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPL------HPH-IEHVAGDMFQS--V----PKGDAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~r-v~~~~~d~~~~--~----p~~D~i 252 (353)
..+.+||||.||+|.+....+..+|. .++.+.|. +..++..++ ... ++|.++|.++. + |.-+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 78899998 555665543 244 49999999972 2 223999
Q ss_pred EeccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC-----CcccCHHHHH
Q 018576 253 FLKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG-----GKERTKHEFM 326 (353)
Q Consensus 253 ~~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~t~~~~~ 326 (353)
+.+..+..++|.+ +...|+.+.+++.|||+|+....-..+.. + ........ +.+ -+.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-----e----~IAr~Lts-Hr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-----E----MIARVLTS-HRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-----H----HHHHHHhc-ccCCCceEEEecCHHHHH
Confidence 9999999999877 55689999999999999997654332211 0 01111111 112 2468999999
Q ss_pred HHHHhcCCceeeEeeeC-CceEEEEEe
Q 018576 327 TLATGAGFSGIRSDLVT-GNFWVMEFY 352 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~~-~~~~vi~~~ 352 (353)
+|+++|||+.++..--. +-++|..+.
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeec
Confidence 99999999976654333 334554443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-10 Score=96.01 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=77.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~ 248 (353)
...++..+. ..++.+|||||||+|..+..+++.. ++.+++++|. +++++.++++ .+++++.+|.....+ .
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 344555565 6778999999999999999999876 4579999998 7788777652 579999999887433 3
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ |+|++....+.+ .+.+.+.|+|||+|++..
T Consensus 144 ~~fD~I~~~~~~~~~--------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDI--------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccc--------hHHHHHhhCCCcEEEEEE
Confidence 3 999998776543 235667899999998854
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=89.69 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEEEeccccccCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAIFLKWILHDWD 262 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i~~~~~Lh~~~ 262 (353)
+++.||||+|||.|.++..|.+. .++++.|+++ ++.+..+.+ ..+..+++|+.+ .+|+. |.|+++.+|....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 56799999999999999888885 5889999998 444444433 368899999987 35654 9999999999975
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecCCC---------CCCccccc-cccccchhhhhhCCCCcccCHHHHHHHHHhc
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLPEV---------PNTSIESK-SNSHIDVLMMTQNPGGKERTKHEFMTLATGA 332 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 332 (353)
. ..++|+++.|+ |...+|.-+-...= ...+.... ...|.+ +||=...|..+++++.++.
T Consensus 90 ~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 R--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred H--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence 5 45888887665 55666554321100 00010000 011111 3455667999999999999
Q ss_pred CCceeeEeeeCC
Q 018576 333 GFSGIRSDLVTG 344 (353)
Q Consensus 333 Gf~~v~~~~~~~ 344 (353)
|+++++...+..
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999998877653
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=96.09 Aligned_cols=123 Identities=10% Similarity=0.093 Sum_probs=91.5
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCCCC-CCC-cEEEeccccccCCchHH
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQSV-PKG-DAIFLKWILHDWDDEHC 266 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~-p~~-D~i~~~~~Lh~~~~~~~ 266 (353)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++. ++++++.+|+.+.. ... |+|+++-.+++.+..+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46999999999999999999887789999999 7888877764 67999999998733 333 99999888877554322
Q ss_pred ------------------HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 267 ------------------LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 267 ------------------~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
.++++.+...|+|+|.+.+.=...+ . -....+.++|+.+
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-------------~----------y~~sl~~~~y~~~ 201 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-------------Y----------YDGTMKSNKYLKW 201 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-------------c----------ccccCCHHHHHHH
Confidence 3566777778888886666511100 0 0112468899999
Q ss_pred HHhcCCce
Q 018576 329 ATGAGFSG 336 (353)
Q Consensus 329 l~~aGf~~ 336 (353)
|+++||..
T Consensus 202 l~~~g~~~ 209 (279)
T PHA03411 202 SKQTGLVT 209 (279)
T ss_pred HHhcCcEe
Confidence 99999964
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-10 Score=102.59 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=81.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---CCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---SVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~ 249 (353)
.+.+.+. ......+||||||+|.++..+++.+|+..++|+|+ +.+++.+.+ ..++.++.+|+.. .++.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3455454 33456999999999999999999999999999998 666655533 2679999999853 45554
Q ss_pred --cEEEeccccccCCchH-----HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 --DAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|.|++.+... |+... ...+|+.++++|+|||.+.+..-.
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 9998765432 33221 148999999999999999996643
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=92.22 Aligned_cols=97 Identities=13% Similarity=0.232 Sum_probs=75.1
Q ss_pred HhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CCCC-
Q 018576 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VPKG- 249 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p~~- 249 (353)
..+. .....+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+. .+..
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 4444 6677899999999999999998875 6679999999 7777765431 5788999998652 2223
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
|+|++... ......+++.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99988542 23456899999999999999986
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=93.44 Aligned_cols=101 Identities=12% Similarity=0.229 Sum_probs=77.3
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---CCC-C
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---VPK-G 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~p~-~ 249 (353)
+...+. ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.++++ ++++++.+|+.+. ... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 445554 56678999999999999999998889899999999 7787766542 5789999988642 222 2
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.+++.. .....++++++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 12356899999999999999998764
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=94.88 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=76.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K- 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~- 248 (353)
..++..+. ..++.+|||||||+|.++..+++..+ +.+++++|. +++++.++++ ++++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 34555555 66788999999999999999999875 578999998 7778776542 579999999977333 2
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|++....+.. ...+.+.|+|||++++.-
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEEE
Confidence 3 999988665443 445778999999998853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=92.27 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=97.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C--CCCC--cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S--VPKG--DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~--~p~~--D~i~~ 254 (353)
.....+|||+|||+|..++.++++++.++++++++ +.+.+.|++. +|+++++.|+.. . .+.+ |+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44578999999999999999999999999999999 6677766652 789999999976 2 2223 99999
Q ss_pred ccccccCCch----------------HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 255 KWILHDWDDE----------------HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 255 ~~~Lh~~~~~----------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
+--.+.-.+. ...++++.+.+.|||||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------------------
Confidence 9777665433 2468899999999999999987642
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....+|.+++...+|...++..+
T Consensus 173 -erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 173 -ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred -HHHHHHHHHHHhcCCCceEEEEe
Confidence 01346778888888887776554
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.9e-09 Score=97.38 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCC-C-C-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVP-K-G-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p-~-~-D~i~~~~~Lh 259 (353)
+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.++++ .+++++.+|+++ ..+ . . |+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446999999999999999999999999999999 7788777653 479999999976 333 2 3 9999965321
Q ss_pred cCCc-----------------------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 260 DWDD-----------------------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 260 ~~~~-----------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
.-.+ +..+++++.+.+.|+|||.+++ |...
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 1000 1134778888889999998764 3311
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee-CCceEEEEE
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV-TGNFWVMEF 351 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~-~~~~~vi~~ 351 (353)
.-.+.+.+++++.||..+++... .+...++..
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~ 416 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLG 416 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEE
Confidence 01446788899999988776543 344444433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=97.84 Aligned_cols=94 Identities=15% Similarity=0.258 Sum_probs=74.7
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEec------
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLK------ 255 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~------ 255 (353)
.+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ .+++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 6777766542 3599999999886654 3 999986
Q ss_pred -------cccccCCc----------hHHHHHHHHHHHhCCCCCEEEE
Q 018576 256 -------WILHDWDD----------EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 256 -------~~Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.++++-+. .....+++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 22332221 1356899999999999998764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-09 Score=90.42 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=74.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCC-C-cEEEeccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPK-G-DAIFLKWILH 259 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh 259 (353)
..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .++.++.+|+.+.++. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455679999999999999998876 3458999998 6677655542 3578889998775554 3 9999974332
Q ss_pred cCCc-------------------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 260 DWDD-------------------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 260 ~~~~-------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.-+. .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2111 114568899999999999999876543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-09 Score=88.96 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=75.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC---------CCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS---------VPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p~- 248 (353)
++...+....++.+|||+|||+|.++..+++.+ +..+++++|+.+.. ..+++.++.+|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445545677899999999999999999987 66789999995433 335788998898652 233
Q ss_pred C-cEEEecccccc---CCc------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHD---WDD------EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~---~~~------~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|++....|. |.- ....++|+++++.|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3 99998644321 111 123689999999999999999853
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=98.86 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=74.6
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccc----
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWI---- 257 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~---- 257 (353)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++++ ++++++.+|+++.++. . |+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 7778766542 4699999999875554 3 99998621
Q ss_pred ---------cccCCc----------hHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 ---------LHDWDD----------EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 ---------Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++.+. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111 2246889999999999999886
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-09 Score=101.93 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=88.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEecccc--
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWIL-- 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~L-- 258 (353)
..+|||||||+|.++..++..+|+.+++++|. +.+++.++++ +++.++.+|+++..+. . |+|+++--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 6777776642 4799999998875544 3 999985211
Q ss_pred ------------ccCC------c----hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 259 ------------HDWD------D----EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 259 ------------h~~~------~----~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
.+.+ . +...++++++.+.|+|||.+++ |...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 1111 0 1235688899999999999875 4210
Q ss_pred CcccCHHHHHHHHHhcCCceeeEee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
...+.+.+++.+.||..+++..
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYK 293 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEe
Confidence 0144577788888988776654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=96.69 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC---CCCCC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ---SVPKG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p~~-D~i~~~~ 256 (353)
+++.+|||||||+|.++..+++.+|+.+++++|+ +++++.+++ .++++++.+|..+ ..++. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 888887764 2679999999865 23334 9998752
Q ss_pred cccc--CCch-HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHD--WDDE-HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~--~~~~-~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
++. .+.. ....+++++++.|+|||.+++.-
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 1111 12699999999999999999853
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-09 Score=93.44 Aligned_cols=93 Identities=20% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
++.+|||||||+|.++..+++. +..+++++|. +.+++.++++ .++.+...+.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4589999999999999888764 4568999999 6777776652 34666666533322333 999987543
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+....++.++++.|+|||++++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3356899999999999999998764
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=85.76 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=111.1
Q ss_pred hhhcccCchHHHHHHHHHHhchh----hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhh
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTS----LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEH 228 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 228 (353)
+..+..+|.....|+.+.+..-. ..+..+++.+...+....|.|+|||.+..+. .-.-++.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-----ccccceeeeeeec----
Confidence 44556677777777776654322 2455666666634567899999999998765 1123677778722
Q ss_pred CCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccc
Q 018576 229 APLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305 (353)
Q Consensus 229 a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~ 305 (353)
.+-+++..|+.. |+++. |++++...|.. .+...++++++|+|+|||.+.|.|.... .
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------f 269 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------F 269 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh-------------c
Confidence 234677888888 77654 99988887754 4467999999999999999999986321 1
Q ss_pred cchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 306 ~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
-+...+.+.|...||...+.......+.+.++.|
T Consensus 270 --------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 270 --------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred --------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 1233477889999999887766666777776654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-09 Score=89.87 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=99.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCee-EEeC---CCCCC-CCCC-cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIE-HVAG---DMFQS-VPKG-DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~-~~~~---d~~~~-~p~~-D~ 251 (353)
++++.... .....++||+|||||-.+..|.... -+.+|+|+ ..|+++|.++.-.+ +.+. +|... -++. |+
T Consensus 115 ~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 115 AEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHHhcc-CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 34444444 4457899999999999988887653 36789999 67899988763322 1222 23321 2233 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc-ccCHHHHHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK-ERTKHEFMTLAT 330 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~t~~~~~~ll~ 330 (353)
|+...||-++.+ ...++.-+...|+|||.+.++-...+.... +.. .|..+ -.+..-.++.++
T Consensus 192 i~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l-------~ps~RyAH~~~YVr~~l~ 254 (287)
T COG4976 192 IVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVL-------GPSQRYAHSESYVRALLA 254 (287)
T ss_pred hhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCC--------eec-------chhhhhccchHHHHHHHH
Confidence 999999999875 568899999999999999998766655311 111 11111 235667788999
Q ss_pred hcCCceeeEeee
Q 018576 331 GAGFSGIRSDLV 342 (353)
Q Consensus 331 ~aGf~~v~~~~~ 342 (353)
..||+++.+.+.
T Consensus 255 ~~Gl~~i~~~~t 266 (287)
T COG4976 255 ASGLEVIAIEDT 266 (287)
T ss_pred hcCceEEEeecc
Confidence 999999988765
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=7e-10 Score=86.23 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=75.8
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-C--CCCC--cEEEeccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-S--VPKG--DAIFLKWI 257 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p~~--D~i~~~~~ 257 (353)
+.+|||+|||+|.++..+++.. ..+++++|+ +..++.++. .++++++.+|+.+ . .+.. |+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3589999999999999999998 789999999 666665543 2679999999987 3 4443 99999877
Q ss_pred cccCCc------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 258 LHDWDD------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 258 Lh~~~~------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.+.... +....+++++.+.|+|||.++++-+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 764321 1246889999999999999998753
|
... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-09 Score=78.73 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=74.5
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------CCCCeeEEeCCCCCCC---CCC-cEEEeccccccC
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------LHPHIEHVAGDMFQSV---PKG-DAIFLKWILHDW 261 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~~---p~~-D~i~~~~~Lh~~ 261 (353)
+|+|+|||+|.++..+++ .+..+++++|. +..+..++ ...++.+...|+.+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999998 45554443 2367899999998732 233 999999999875
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 355789999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=90.92 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCchH----HHHHHHHH---CC--CCeEEEecc-hHHHhhCCCC--------------------------
Q 018576 189 ANIKQLVDVGGNLGV----TLQAITSK---YP--YIKGINFDQ-PHVIEHAPLH-------------------------- 232 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~----~~~~l~~~---~p--~~~~~~~D~-~~~~~~a~~~-------------------------- 232 (353)
.+..+|+..||+||. +++.+.+. .. +.++++.|+ +.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 357899999999995 33333341 12 467899998 6778777541
Q ss_pred --------CCeeEEeCCCCC-CCCC-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 233 --------PHIEHVAGDMFQ-SVPK-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 233 --------~rv~~~~~d~~~-~~p~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+|+|..+|..+ +.+. . |+|+|++||-+++++...+++++++++|+|||+|++-.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 369999999998 3333 3 99999999999999989999999999999999999854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=90.98 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCchH----HHHHHHHHCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 018576 190 NIKQLVDVGGNLGV----TLQAITSKYP----YIKGINFDQ-PHVIEHAPLH---------------------------- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 232 (353)
+..+|+..||+||. .++.+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35899999999995 3334444332 467999998 6677665431
Q ss_pred ---------CCeeEEeCCCCC-CCC--CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 233 ---------PHIEHVAGDMFQ-SVP--KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 233 ---------~rv~~~~~d~~~-~~p--~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+|+|..+|..+ ++| .. |+|+|.++|.+++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999988 554 34 99999999999998889999999999999999988744
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=93.39 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=74.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
+.++.+|||+|||+|.++.+.+.. +.+++++|. +.+++.++.+ +.+++..+|+.+ +.+.. |+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567789999999999999886653 678999999 6777765532 447899999987 55443 99998632
Q ss_pred ccc-------CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 258 LHD-------WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 258 Lh~-------~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
... ...+...++|+++++.|+|||++++.-+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 211 1113357899999999999999998653
|
This family is found exclusively in the Archaea. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-08 Score=85.36 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=83.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------------------CCCeeEEeCCCCC-CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------------------HPHIEHVAGDMFQ-SV- 246 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~d~~~-~~- 246 (353)
..+..+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ..++++.++|+++ +.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 345679999999999999999997 678999999 555665311 2479999999998 32
Q ss_pred C---CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 247 P---KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 247 p---~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+ .. |+|+=..+|+.++++...+..+.+.+.|+|||.++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2 12 99999999999999989999999999999999999987643
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.3e-09 Score=93.18 Aligned_cols=98 Identities=24% Similarity=0.302 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCC--CC-C-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSV--PK-G-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~--p~-~-D~i 252 (353)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|...-+ +. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4678999999999999999997655568999999 777777654 368999999987622 22 3 999
Q ss_pred EeccccccCCchH--HHHHHHHHHHhCCCCCEEEEE
Q 018576 253 FLKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 253 ~~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~ 286 (353)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433222211 258899999999999998874
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=89.01 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCCCCC----CC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQSVP----KG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~~p----~~-D~i~~~~~Lh~ 260 (353)
...+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .+++++.+|+++..+ .. |+|+++--...
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999999 7788777653 346889999876433 23 99998743221
Q ss_pred ------CCch------------------HHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 ------WDDE------------------HCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ------~~~~------------------~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.+++ -..++++.+.+.|+|||++++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1110 1347888889999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=87.35 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=73.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C--
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-- 249 (353)
.++..+. ..+..+|||||||+|.++..+++... +++++|. +.+++.++++ .++.++.+|..+.++. +
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 3444454 66778999999999999988777653 7999998 6677666542 4689999998774442 3
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776543 3456789999999998654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-07 Score=83.52 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCchH----HHHHHHHHCC-----CCeEEEecc-hHHHhhCCCC---------------------------
Q 018576 190 NIKQLVDVGGNLGV----TLQAITSKYP-----YIKGINFDQ-PHVIEHAPLH--------------------------- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 232 (353)
+..+|.-.||+||. .++.+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999994 5666667776 478899998 6677777541
Q ss_pred --------CCeeEEeCCCCC-C-CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 233 --------PHIEHVAGDMFQ-S-VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 233 --------~rv~~~~~d~~~-~-~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..|.|..+|..+ + .+.. |+|+|.+||-+++.+.-.+++++.+..|+|||+|++=.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248999999988 4 4444 99999999999998888899999999999999999843
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=85.79 Aligned_cols=105 Identities=21% Similarity=0.353 Sum_probs=76.2
Q ss_pred HHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC-------------------------
Q 018576 181 ILESYK-GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP------------------------- 233 (353)
Q Consensus 181 ~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~------------------------- 233 (353)
.++.++ .+-.+..+|||||..|.++..+++.|....++|+|+ +..|..|+++-
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 344444 255788999999999999999999998889999999 66678776630
Q ss_pred ----------------CeeEEe-------CCCCC-CCCCCcEEEec----cccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 234 ----------------HIEHVA-------GDMFQ-SVPKGDAIFLK----WILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 234 ----------------rv~~~~-------~d~~~-~~p~~D~i~~~----~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
++.|.. -||.. ..|+-|+|+|- ++--+|.|+-...+|+++++.|.|||+|++
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111111 12322 12233888554 454568899999999999999999999886
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-08 Score=84.44 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=97.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC---C---------------CCCeeEEeCCCCC-CCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP---L---------------HPHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~rv~~~~~d~~~-~~p 247 (353)
.....+||..|||.|.-+..|+++ +.+++|+|+ +..++.+. . ..+|++.++|+|+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 556789999999999999999997 679999999 55666541 1 1468999999998 322
Q ss_pred C--C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 248 K--G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 248 ~--~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
. . |+|+=.-+|+.++.+...+..+.+.+.|+|||.++++....+.... .......+.++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~------------------~GPPf~v~~~e 174 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM------------------EGPPFSVTEEE 174 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS------------------SSSS----HHH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC------------------CCcCCCCCHHH
Confidence 2 2 9999999999999999999999999999999996666554433210 00111246889
Q ss_pred HHHHHHhcCCceeeEee
Q 018576 325 FMTLATGAGFSGIRSDL 341 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~ 341 (353)
+.++|. .+|++.....
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 999998 7888766543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.3e-09 Score=89.94 Aligned_cols=141 Identities=18% Similarity=0.318 Sum_probs=84.9
Q ss_pred CCCeEEEEcCC--chHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC----CCC--eeEEeCCCCCC---CC--C--C---
Q 018576 190 NIKQLVDVGGN--LGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL----HPH--IEHVAGDMFQS---VP--K--G--- 249 (353)
Q Consensus 190 ~~~~vLDvG~G--~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~r--v~~~~~d~~~~---~p--~--~--- 249 (353)
+..++|||||| |-....+++++ .|+.+++-+|. |-++..++. .++ ..++.+|+.++ +. + +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999 44567777765 59999999999 777777764 245 88999999873 22 1 1
Q ss_pred ----cEEEeccccccCCc-hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 250 ----DAIFLKWILHDWDD-EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 250 ----D~i~~~~~Lh~~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
=.+++..+||+++| ++...+++.++++|.||++|+|...+.+..+.. ........... ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~-----~~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPER-----AEALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHH-----HHHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHH-----HHHHHHHHHcC-CCCceecCHHH
Confidence 37899999999987 678899999999999999999999876432111 01111111111 22467899999
Q ss_pred HHHHHHhcCCceee
Q 018576 325 FMTLATGAGFSGIR 338 (353)
Q Consensus 325 ~~~ll~~aGf~~v~ 338 (353)
+.++|. ||+.++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999996 888653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=84.28 Aligned_cols=121 Identities=19% Similarity=0.205 Sum_probs=87.6
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEeccc--ccc--
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFLKWI--LHD-- 260 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~~~~--Lh~-- 260 (353)
+|||||||+|..++.++..+|+++++++|+ +..++.|+++ .++.++.+|.+++.+.. |+|+++-- =..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 7777766542 45677777988866655 88888732 111
Q ss_pred -CC------------------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccC
Q 018576 261 -WD------------------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERT 321 (353)
Q Consensus 261 -~~------------------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 321 (353)
.. -+-..+++..+.+.|+|||.+++ |... + .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-------------------------~----q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-------------------------T----Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-------------------------C----c
Confidence 00 01356788889999999777765 3211 1 1
Q ss_pred HHHHHHHHHhcC-CceeeEeeeC
Q 018576 322 KHEFMTLATGAG-FSGIRSDLVT 343 (353)
Q Consensus 322 ~~~~~~ll~~aG-f~~v~~~~~~ 343 (353)
.+...+++.+.| |..+......
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~ 265 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDL 265 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecC
Confidence 456788999999 6666665543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=80.52 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=88.4
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------C-CCeeEEeCCCCCC-C-CCC-cEEEecccccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------H-PHIEHVAGDMFQS-V-PKG-DAIFLKWILHD 260 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~~-~-p~~-D~i~~~~~Lh~ 260 (353)
.+|||+|||.|.++..|++.-=.-+.+|+|. +..++.|+. . +.|+|.+.|+.+| + +.. |+|+=..++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998643345788897 555555432 1 3499999999984 2 222 77766655544
Q ss_pred CC------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 261 WD------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 261 ~~------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
++ .......+..+.+.|+|||.++|.-. -.|.+|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCCe
Confidence 32 22224567888889999999998432 1468889999999999
Q ss_pred ceeeEeeeC
Q 018576 335 SGIRSDLVT 343 (353)
Q Consensus 335 ~~v~~~~~~ 343 (353)
.....+|.+
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 988887765
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=84.61 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCee----EEeCCCCCCCCC---CcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIE----HVAGDMFQSVPK---GDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~----~~~~d~~~~~p~---~D~i~~~~~ 257 (353)
.++.+|||||||+|-+++..++.- ..+++++|+ |..++.++.+ .+|. ....+..+ .+. .|+|+++=
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-~~~~~~~DvIVANI- 237 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-VPENGPFDVIVANI- 237 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-hcccCcccEEEehh-
Confidence 477999999999999999988853 457999999 6677776653 3343 22223222 222 29988764
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
| .+-...+...+++.++|||++++.-.... -.+...+.+.++||.++
T Consensus 238 L----A~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 238 L----AEVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVV 284 (300)
T ss_pred h----HHHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEe
Confidence 3 23467999999999999999998764321 14456788888999998
Q ss_pred eEeeeCCceE
Q 018576 338 RSDLVTGNFW 347 (353)
Q Consensus 338 ~~~~~~~~~~ 347 (353)
++..-....+
T Consensus 285 ~~~~~~eW~~ 294 (300)
T COG2264 285 EVLEREEWVA 294 (300)
T ss_pred EEEecCCEEE
Confidence 8876644433
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=90.95 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------------CCCeeEEeCCCCCCC---CCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------------HPHIEHVAGDMFQSV---PKG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~---p~~- 249 (353)
..++.+||+||||+|..+..+++..+..+++++|+ +++++.|++ .+|++++.+|..+.+ ++.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35678999999999999999998655678999999 778887774 268999999988622 223
Q ss_pred cEEEeccccc---cCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 DAIFLKWILH---DWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 D~i~~~~~Lh---~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...-. ....-....+++.+++.|+|||.+++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999874211 0111223579999999999999998863
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-08 Score=88.73 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC--cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG--DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~--D~i~~~~~L 258 (353)
.++.+|||||||||-+++..++.. ..+++++|. |..++.++++ +++... . ....+.. |+|+++-.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANIL- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES--
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCC-
Confidence 355799999999999999888863 458999998 6677766653 445442 1 1223323 99887633
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
.+-...++..+.+.|+|||+|++.-....+ .+++.+.+++ ||+.++
T Consensus 235 ----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 235 ----ADVLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHHHHT-TEEEEE
T ss_pred ----HHHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHHHHC-CCEEEE
Confidence 244678889999999999999997654211 3466777877 999998
Q ss_pred EeeeCCceEEEEEe
Q 018576 339 SDLVTGNFWVMEFY 352 (353)
Q Consensus 339 ~~~~~~~~~vi~~~ 352 (353)
....+...+++--+
T Consensus 281 ~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 281 EREEGEWVALVFKK 294 (295)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 88877666665433
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-08 Score=84.54 Aligned_cols=93 Identities=23% Similarity=0.329 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeC-------CCCCCC--CCC-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAG-------DMFQSV--PKG-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~-------d~~~~~--p~~-D~i~~~~~L 258 (353)
....++|||||+|..++-++..|. ++++.|. +.|++.++++++++.... ++.+-. ++. |+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 344999999999988888877754 6899999 789999999866544332 222211 233 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCC-EEEEEe
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDG-KVIVVE 287 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG-~l~i~e 287 (353)
|.++ ..++.+.++++||+.| .+++..
T Consensus 111 HWFd---le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 111 HWFD---LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred Hhhc---hHHHHHHHHHHcCCCCCEEEEEE
Confidence 9875 3589999999999776 555443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-08 Score=89.14 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=73.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC---CCCC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ---SVPK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~-D~ 251 (353)
.+++.+||+||||.|..+.++++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..+. . |+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35678999999999999999987533357899998 667777655 2689999999764 2333 3 99
Q ss_pred EEeccccccCCch--HHHHHHHHHHHhCCCCCEEEEE
Q 018576 252 IFLKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 252 i~~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
|++-..-+..+.. -...+++.++++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9885443322211 1357899999999999999764
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-08 Score=89.77 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=74.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCCCCC--C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQSVPK--G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p~--~ 249 (353)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|. +++++.+++ .+++.++.+|..+..+. .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4445454 566789999999999999999998864 57999998 777766654 25789999998763332 2
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...+++. ...+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 999988665443 334677999999998854
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.9e-08 Score=93.38 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC-------------CCCeeEEeCCCCCC---CCCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL-------------HPHIEHVAGDMFQS---VPKG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p~~- 249 (353)
+++.+|||||||+|..+.++++ +|. .+++.+|+ +++++.+++ .+|++++.+|..+. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999997 565 79999999 888888766 16899999998762 2334
Q ss_pred cEEEeccccccCCch---HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 DAIFLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...-...+.. ...++++++++.|+|||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987543321111 12468999999999999988764
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-08 Score=65.77 Aligned_cols=51 Identities=61% Similarity=0.888 Sum_probs=42.6
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
.+|++|+++||||.|.++| ++|.|++||+.+++..+|.++..++|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999999975 36999999999999436667889999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.7e-08 Score=80.47 Aligned_cols=100 Identities=11% Similarity=0.225 Sum_probs=79.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~ 249 (353)
+..++..+. ++++.+|||||||+|..+.-+++... +++.++. +...+.|+++ .+|.++++|-...+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 445666666 88899999999999999999998765 8899998 7777777653 5799999999887765 4
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.|+..-..-..|+ .+.+.|+|||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99998877655543 24568999999999776
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=87.64 Aligned_cols=98 Identities=21% Similarity=0.225 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i~ 253 (353)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+- .++. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999988766678999998 667666554 25788888887652 1233 9999
Q ss_pred eccccccCCchH--HHHHHHHHHHhCCCCCEEEEE
Q 018576 254 LKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 254 ~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~ 286 (353)
+...-+.-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 876533222222 358899999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.69 E-value=7e-08 Score=80.20 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=71.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG--D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 250 (353)
+.+++.+. ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++ .++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 35566665 667789999999999999999998 468999998 567666544 3589999999988 55543 8
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.|+++-..| .+.+...+++++. .+.++|.+++...
T Consensus 80 ~vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 80 KVVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred EEEECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 887765544 4433333443321 1336677666544
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-08 Score=86.07 Aligned_cols=102 Identities=16% Similarity=0.299 Sum_probs=74.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK- 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~- 248 (353)
...+++.+. +.++.+|||||||+|..+.-++... +.-+++.+|. +...+.|+++ .+|.++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 456677777 8888999999999999999999876 4457899998 7777777653 5799999998775554
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ |.|++.......+. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 3 99999988765432 25567999999998554
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-07 Score=79.94 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=84.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC-CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS-VP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~-~p 247 (353)
...|+.... ..++.+|+|.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ ++|.+..+|+.+. .+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 334555555 888999999999999999999984 47789999998 7777777653 5699999999883 44
Q ss_pred CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 248 KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
+. |+|++ +++++ -++|.++.++|+|||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 44 88876 46665 4899999999999999999877654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=81.34 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC--------CCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV--------PKG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~--------p~~- 249 (353)
..++.+|||||||+|..+..++...| +.+++.+|. ++.++.|+++ ++++++.+|+.+.+ .+.
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44688999999999999999998875 679999998 6677766542 67999999997621 123
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++-. ..+....++..+.+.|+|||.+++-+...
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 9987742 23445688999999999999877655443
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=80.19 Aligned_cols=92 Identities=10% Similarity=0.026 Sum_probs=71.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHC---CCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEeccccccCCc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKY---PYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDD 263 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~ 263 (353)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++. +++.++..|+.. +.+.. |+|+++--.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 3578999999 7788888765 678999999976 44333 99999977664331
Q ss_pred ----------hHHHHHHHHHHHhCCCCCE
Q 018576 264 ----------EHCLKLLKNCYKSVPEDGK 282 (353)
Q Consensus 264 ----------~~~~~~L~~~~~~L~pgG~ 282 (353)
.-...+++++.+.++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1134689999986666664
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-07 Score=78.14 Aligned_cols=143 Identities=16% Similarity=0.183 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCC-cEEEeccccccCCchHHH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~ 267 (353)
+..++||||.|.|..+..++..+.+ +...+. +.|....+++ +++.+..|-....+.. |+|.|-|+|.-..+ ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~--P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRCDR--PL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhccCC--HH
Confidence 4579999999999999999998875 556666 5565555543 4454444322222223 99999999987654 46
Q ss_pred HHHHHHHHhCCCCCEEEEEeeec--CC--CCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 268 KLLKNCYKSVPEDGKVIVVELML--PE--VPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~i~e~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
.+|+.++++|+|+|++++.-..+ |. ....... +....++ ......+-..+.+.+.|+.+||++++....|
T Consensus 169 ~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~-~P~e~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSN-RPSELLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCC-CchhhcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999998855432 11 0000000 0000111 1101111223344588999999999887664
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=87.87 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=77.5
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCC---CCC-C-cEE
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQS---VPK-G-DAI 252 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~---~p~-~-D~i 252 (353)
.++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ .+++++.+|+.+. .+. . |.|
T Consensus 239 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 239 LLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred HcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEE
Confidence 344 55678999999999999999999988789999998 7777766542 2478899998762 222 3 999
Q ss_pred Eeccc------cc-------cCCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLKWI------LH-------DWDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~~~------Lh-------~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++.-- +. .....+ ..++|+++.+.|+|||++++.....
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 84321 11 111111 2479999999999999999888643
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.3e-07 Score=92.71 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=85.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------------------CCCeeEEeCCCCCCCC
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------------------HPHIEHVAGDMFQSVP 247 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~rv~~~~~d~~~~~p 247 (353)
+.+|||||||+|..++.+++.+|..+++++|+ +.+++.|++ .+|++++++|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 667765522 1479999999988553
Q ss_pred C---C-cEEEeccc--ccc----CC--------------------------ch----HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 248 K---G-DAIFLKWI--LHD----WD--------------------------DE----HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 248 ~---~-D~i~~~~~--Lh~----~~--------------------------~~----~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. . |+|+++-- ... ++ ++ -.++++..+.+.|+|||.++ .|
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-FN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-EE
Confidence 2 2 88887632 110 00 01 12577888888999999776 44
Q ss_pred eecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH-HHHHhcCCceeeEeee
Q 018576 288 LMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM-TLATGAGFSGIRSDLV 342 (353)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~-~ll~~aGf~~v~~~~~ 342 (353)
.... ..+.+. +++++.||+.++++..
T Consensus 278 iG~~-----------------------------q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGGR-----------------------------PGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECcc-----------------------------HHHHHHHHHHHHCCCCeeEEeee
Confidence 3211 133566 5788888887766553
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=87.98 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=78.4
Q ss_pred HHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C-CeeEEeCCCCC-CC--CC-C
Q 018576 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P-HIEHVAGDMFQ-SV--PK-G 249 (353)
Q Consensus 182 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~-~~--p~-~ 249 (353)
...++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.++++ . ++.+..+|... +. +. .
T Consensus 231 ~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 231 ATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 33444 55678999999999999999999988789999998 6677665432 1 23446677654 22 22 2
Q ss_pred -cEEEec------cccccCCch-------H-------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 250 -DAIFLK------WILHDWDDE-------H-------CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 250 -D~i~~~------~~Lh~~~~~-------~-------~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
|.|++- .+++..++- + -.++|+++.+.|||||+|+..+....
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999852 455544331 1 25899999999999999999987664
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=80.32 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=68.0
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------CCCCeeEEeCCCCCC----CCCC--cEEEeccccc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------LHPHIEHVAGDMFQS----VPKG--DAIFLKWILH 259 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~----~p~~--D~i~~~~~Lh 259 (353)
.+||||||.|.++..+++.+|+..++|+|. ...+..+. ..+++.++.+|+..- ++.+ |-|++.+-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999999999999998 44454432 247899999998761 3333 6555543321
Q ss_pred cCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 260 DWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 260 ~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+... ...+|..+.+.|+|||.|.+..-
T Consensus 100 -WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 -WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 22111 24899999999999999988764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=88.06 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=75.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+++++.+|+.+. ++.. |+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 5566899999999999999999987 6789999999 6666655432 4589999998762 3333 999874
Q ss_pred cc------ccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 WI------LHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~~------Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
-- +.. ++..+ ...+|+++.+.|+|||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 22 111 11111 2468999999999999999766543
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=86.93 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=76.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEec--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLK-- 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~-- 255 (353)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+|+++.+|+.+..+. . |+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44568999999999999999998764 468999999 7777766542 4689999998763233 3 999862
Q ss_pred ----ccc-------ccCCchHH-------HHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 256 ----WIL-------HDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 256 ----~~L-------h~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
.++ +.++.+.. .++|+++.+.|+|||+|+.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 12232222 3689999999999999999887653
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=84.39 Aligned_cols=98 Identities=23% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------------C----CeeEEeCCCCC-C----C-
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------------P----HIEHVAGDMFQ-S----V- 246 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----rv~~~~~d~~~-~----~- 246 (353)
+..+|||+|||-|+=+....... -..++++|+ ...++.|+++ . ...|+.+|.+. . +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999998777776653 347899999 5667666442 1 24678888875 2 2
Q ss_pred CC--C-cEEEeccccccC--CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 247 PK--G-DAIFLKWILHDW--DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 247 p~--~-D~i~~~~~Lh~~--~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+. . |+|-+.+.||+. +.+.++.+|+++...|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999984 456678899999999999999998765
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-07 Score=86.46 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=77.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C----CCC-C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S----VPK-G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~----~p~-~-D~i 252 (353)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+|+++++|..+ + ... . |.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 55678999999999999999999864 568999998 6677665542 468999999876 3 222 3 999
Q ss_pred Eec------cccccCCc-------hH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLK------WILHDWDD-------EH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~------~~Lh~~~~-------~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++. .+++..++ +. -.++|+++.+.|||||+|+..+...
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 863 34444332 11 2588999999999999999887654
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-07 Score=77.21 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC-CeeEEeCCCCC--CCCCC--cEEEeccccccC--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP-HIEHVAGDMFQ--SVPKG--DAIFLKWILHDW-- 261 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-rv~~~~~d~~~--~~p~~--D~i~~~~~Lh~~-- 261 (353)
...-|||||||+|-.+..+... +..++++|+ |.|++.|.+.. .=+++-+|+-+ |++.+ |.+++...++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 4789999999999887777654 568899999 89999887621 13577788877 45555 888877666433
Q ss_pred -------CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 262 -------DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 262 -------~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+......++..++..|++|++.++.-
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 22334577899999999999988754
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-07 Score=77.19 Aligned_cols=111 Identities=16% Similarity=0.279 Sum_probs=69.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------------CCCeeEEeCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------------HPHIEHVAGDM 242 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d~ 242 (353)
..+++.+. +.+...++|||||.|......+-.++--+++|+++ +...+.+.. ..++++..+||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 34556665 77788999999999999998888776666999997 443333221 25688999999
Q ss_pred CC-CC-----CCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 243 FQ-SV-----PKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 243 ~~-~~-----p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
.+ +. .++|+|++++++ |+ ++...-|.+....||||.+++-...+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 87 32 346999999987 43 556677788889999999988776666543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=72.35 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=90.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CCCC---C--cEEEeccccccCCch
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SVPK---G--DAIFLKWILHDWDDE 264 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~---~--D~i~~~~~Lh~~~~~ 264 (353)
..++|||||=+...... .++-..++.+|+.. + .-.+.+.||++ |+|. . |+|.++.||-+.+++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns------~--~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNS------Q--HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCC------C--CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999976554333 35566799999833 1 23456788888 8873 2 999999999999966
Q ss_pred H-HHHHHHHHHHhCCCCCE-----EEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 265 H-CLKLLKNCYKSVPEDGK-----VIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 265 ~-~~~~L~~~~~~L~pgG~-----l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
. .-+.|+++++.|+|+|. |+|+-+.. .+ .|.+..+.+.|.++++..||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~--------------------Cv--~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP--------------------CV--TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch--------------------Hh--hcccccCHHHHHHHHHhCCcEEEE
Confidence 5 44999999999999999 77764421 11 267778899999999999999988
Q ss_pred EeeeC
Q 018576 339 SDLVT 343 (353)
Q Consensus 339 ~~~~~ 343 (353)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.9e-07 Score=84.41 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=76.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C-C-CCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S-V-PKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~-~-p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++.. ++.+++++|+ +..++.++++ .+++++.+|... + . ++. |.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999987 5679999999 6677666542 458899999865 2 2 223 998862
Q ss_pred ------ccccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 256 ------WILHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 256 ------~~Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
.++.. ++.+. -.++|.++.+.|+|||.|+.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12221 12111 25789999999999999988877653
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=77.53 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=74.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCC--CcEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPK--GDAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~--~D~i~~~~ 256 (353)
..++.+|||+|||+|..+..+++... ..+++++|. +..++.++++ .++.++..|... +.+. .|.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999999875 468999998 6666655432 468888888754 2222 39888631
Q ss_pred ------ccc-------cCCchHH-------HHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 257 ------ILH-------DWDDEHC-------LKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 257 ------~Lh-------~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
++. .|+.+.. .++|+++.+.|||||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 111 1232222 4699999999999999988776543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.6e-07 Score=78.20 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchH-HHhhCCCC--------C----CeeEEeCCCCC-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-VIEHAPLH--------P----HIEHVAGDMFQ-S 245 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~--------~----rv~~~~~d~~~-~ 245 (353)
.++..+. ++...++|+|||-|+=++..-+.- --.++++|+++ .++.|+++ . .+.|+.+|.+. .
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 3444443 566799999999998877776552 12689999954 58887763 1 26888888875 1
Q ss_pred ----C--CC--CcEEEecccccc-C-CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 246 ----V--PK--GDAIFLKWILHD-W-DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 246 ----~--p~--~D~i~~~~~Lh~-~-~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ ++ -|+|-+.+++|+ | +.+.++-+|+++.+.|+|||+++-.-
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 2 22 299999999998 3 35568899999999999999998644
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.7e-07 Score=80.77 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=91.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEe----CCCCCCC--CCC--cEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVA----GDMFQSV--PKG--DAI 252 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~----~d~~~~~--p~~--D~i 252 (353)
...++||||||+|....-++.+.++++++++|+ +.+++.|++. ++|+++. .+++..+ +.. |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888998889999999999 6677766542 3677654 2333322 233 999
Q ss_pred EeccccccCCchH---HHHHHHHHH----------------HhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh
Q 018576 253 FLKWILHDWDDEH---CLKLLKNCY----------------KSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ 313 (353)
Q Consensus 253 ~~~~~Lh~~~~~~---~~~~L~~~~----------------~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (353)
+++--+|.-.++. ...-.+++. +.+.+||.+-++..+..+.. .+.. ...++..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~------~~~~-~~gwftsm 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK------AFAK-QVLWFTSL 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH------HHHh-hCcEEEEE
Confidence 9999988643321 112233322 22346666655555443320 0000 00111111
Q ss_pred CCCCcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 314 NPGGKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 314 ~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
=++.-+...+.+.|++.|.+.++++.+.
T Consensus 267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 267 --VSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --eeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 2555689999999999999888888774
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=69.30 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=89.9
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCC-CCCCeeEEeCCCCC-C--CCC--
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAP-LHPHIEHVAGDMFQ-S--VPK-- 248 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~-~~~rv~~~~~d~~~-~--~p~-- 248 (353)
.++.+.+.++ ++.+.-||++|.|||.++.+++++- +....+.++. ++-..... ..+.+++++||.++ . ..+
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 3455666666 8888999999999999999999865 6667777776 55554444 45889999999986 3 221
Q ss_pred C---cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 249 G---DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 249 ~---D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+ |.|++.--+-.++-....++|+.+...|++||.++-....
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2 9999999999999888889999999999999999887765
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-06 Score=74.24 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC--------CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP--------KG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p--------~~- 249 (353)
..++.+|||||+++|..++.+++..| +.+++.+|. ++..+.|++. ++|+++.+|+.+.++ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999999875 568899998 6666666542 689999999876221 22
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
|+||+-. +.......+..+.+.|+|||.+++-+....
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 8887763 345578999999999999999887555443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=74.63 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=70.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---C-CCCC--cEEEecccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---S-VPKG--DAIFLKWIL 258 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~-~p~~--D~i~~~~~L 258 (353)
-.+||||||.|.++..+++++|+..++|+++ ...+..+.+ ..+++++++|+.. . .+.+ |-|++.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999998 444433322 2489999999876 2 3443 655554331
Q ss_pred ccCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 259 HDWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 259 h~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-|+... ...+|+.+.+.|+|||.|.+..-
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 132111 23799999999999999998763
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=76.43 Aligned_cols=126 Identities=16% Similarity=0.247 Sum_probs=87.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~- 248 (353)
.|+..++ ..++.+|||.|.|+|.++..|++.. |.-++.-+|. ++..+.|++. ++|.+...|+.+ .+++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4555565 7889999999999999999999855 8899999998 6666666542 579999999965 4432
Q ss_pred ---C-cEEEeccccccCCchHHHHHHHHHHHhC-CCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 249 ---G-DAIFLKWILHDWDDEHCLKLLKNCYKSV-PEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 249 ---~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L-~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
. |.|++ +++++. .++..+.++| +|||++++.-++..+ ..
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 2 88876 466554 7799999999 899999987665422 11
Q ss_pred HHHHHHHhcCCceeeEeee
Q 018576 324 EFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~ 342 (353)
...+.|++.||..+++..+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 2335577789988776654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-06 Score=73.18 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=66.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------CCCeeEEeCCCCCCC-----CC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------HPHIEHVAGDMFQSV-----PK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~-----p~-~-D~ 251 (353)
...+.+|||+|||+|..++.++...+..+++..|.+++++..+. ..++.+...|..++. .. . |+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34578999999999999999999877789999998656553322 256888888765422 22 3 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+.+.++++ ++....+++.+.+.|+|+|.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 5668899999999999998877766544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-06 Score=76.00 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=59.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~ 251 (353)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ +++.- +.
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 108 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLK 108 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcce
Confidence 34555555 66678999999999999999999975 8899998 7777776543 689999999987 55432 55
Q ss_pred EEeccccccCC
Q 018576 252 IFLKWILHDWD 262 (353)
Q Consensus 252 i~~~~~Lh~~~ 262 (353)
|+.+- =++.+
T Consensus 109 vv~Nl-PY~is 118 (272)
T PRK00274 109 VVANL-PYNIT 118 (272)
T ss_pred EEEeC-Cccch
Confidence 55543 34444
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-06 Score=74.99 Aligned_cols=112 Identities=17% Similarity=0.324 Sum_probs=78.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecc-hHHHhhCCCC----CCeeE--EeCCCCC---CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQ-PHVIEHAPLH----PHIEH--VAGDMFQ---SV 246 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~rv~~--~~~d~~~---~~ 246 (353)
+.++....+ --.+.+|||+|+|+|..+......++.. +++.+|. +.+++.++.. ..... ...++.. ++
T Consensus 22 l~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 344444455 2346799999999999999988888854 6899998 6666655431 11111 1111111 23
Q ss_pred CCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 247 PKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 247 p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+..|+|+++++|-.+++....++++++.+.+.+ .|+|+|+..+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 344999999999999987788999999888776 99999986554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=74.41 Aligned_cols=90 Identities=14% Similarity=0.244 Sum_probs=62.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCCc-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKGD- 250 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D- 250 (353)
...+++.+. ..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 345666665 66778999999999999999999986 4888888 666665543 3679999999987 555324
Q ss_pred --EEEeccccccCCchHHHHHHHHHHH
Q 018576 251 --AIFLKWILHDWDDEHCLKLLKNCYK 275 (353)
Q Consensus 251 --~i~~~~~Lh~~~~~~~~~~L~~~~~ 275 (353)
+|+.+-. ++++. .++.++..
T Consensus 95 ~~~vvsNlP-y~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLP-YNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCC-hhhHH----HHHHHHhc
Confidence 5554443 33443 44555443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.4e-06 Score=74.34 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=75.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCC-------C-C-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVP-------K-G- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-------~-~- 249 (353)
..++.+||+||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+.++ . .
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34688999999999999999999987 589999998 666666654 2689999999875221 1 2
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+||+-. ...+....+..+.+.|+|||.+++-+...
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9988864 24556789999999999999888765543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.9e-06 Score=73.48 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCCcE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKGDA 251 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D~ 251 (353)
...+++.+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 345566555 5667899999999999999999983 58999998 667766544 3679999999987 6655588
Q ss_pred EEeccccccCCc
Q 018576 252 IFLKWILHDWDD 263 (353)
Q Consensus 252 i~~~~~Lh~~~~ 263 (353)
|+++-..+ ++.
T Consensus 95 Vv~NlPy~-i~s 105 (258)
T PRK14896 95 VVSNLPYQ-ISS 105 (258)
T ss_pred EEEcCCcc-cCc
Confidence 87765543 443
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5e-06 Score=70.60 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC--C-C-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP--K-G-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p--~-~-D~i~~~~~L 258 (353)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++. .+++++.+|+++.++ . . |+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666543 68999998 6666555432 478999999876322 2 2 999998774
Q ss_pred ccCCchHHHHHHHHHHHh--CCCCCEEEEEe
Q 018576 259 HDWDDEHCLKLLKNCYKS--VPEDGKVIVVE 287 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~--L~pgG~l~i~e 287 (353)
+. .....+++.+... |+|++.+++..
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 43 2234555555543 78877666543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.9e-06 Score=75.77 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCCCC---CC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQSVP---KG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~p---~~-D~i~ 253 (353)
+++.+||.||+|.|..+.++++..+..+++.+|+ +.+++.+++ .+|++++.+|....+. +. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4578999999999999999998666678999999 778877764 2689999999887322 23 9999
Q ss_pred eccccccCCc--h---HHHHHHH-HHHHhCCCCCEEEEE
Q 018576 254 LKWILHDWDD--E---HCLKLLK-NCYKSVPEDGKVIVV 286 (353)
Q Consensus 254 ~~~~Lh~~~~--~---~~~~~L~-~~~~~L~pgG~l~i~ 286 (353)
+-.. ..+.. . --..+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8631 11100 0 0246787 899999999998764
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.6e-06 Score=72.24 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=74.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D 250 (353)
.++.+...+ .+.-|||||||+|-++.-.++.- ..++..++.++|.+.|++. +||..+.|.+.+ ++|+. |
T Consensus 168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhccccc-CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 444443312 35789999999999887766653 4588999999998888752 799999999998 89986 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+|++--.=..+-.+....---.+++.|+|.|.++=
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 99876433222223333333346799999998763
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.6e-06 Score=70.26 Aligned_cols=100 Identities=15% Similarity=0.270 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEe-CCCCCCC----CCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVA-GDMFQSV----PKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~-~d~~~~~----p~~-D~i 252 (353)
..++.+||+||.+.|..++.++...| +.+.|.+|. ++..+.|++. ++|..+. +|..+.+ .+. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 789999999 7788887763 6688888 5876622 123 998
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
|+-. ...+-.++|..+.+.|+|||.+++-+...+.
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 8752 2455679999999999999998876665543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.7e-06 Score=71.73 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=68.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCCCCCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQSVPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~~~p~~-D~i~~~ 255 (353)
.+++.+||=||||.|..++++++. |. +++.+|+ +.+++.++++ +|++++.. +.+...+. |+|+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 467899999999999999999996 54 9999998 7788877762 78888762 22111233 999977
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.. + + ..+.+.++++|+|||.++.+-
T Consensus 147 s~---~-~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE---P-D---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC---C-C---hHHHHHHHHhcCCCcEEEECC
Confidence 53 1 2 477899999999999999854
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.2e-05 Score=65.19 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=84.5
Q ss_pred hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh-hCCCCCCeeEEe-CCCCC----CCC-
Q 018576 176 LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE-HAPLHPHIEHVA-GDMFQ----SVP- 247 (353)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~rv~~~~-~d~~~----~~p- 247 (353)
.....+++.+....++.++||+|||||.++..+++. +..+++++|. +.++. ..++.+++.... .|+.. .++
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 344566666651235679999999999999999986 4568999999 43544 566667764333 34432 111
Q ss_pred C---CcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE-EeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 248 K---GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV-VELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 248 ~---~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
+ .|+.+++.. .+|..+.+.|+| |.+++ +-+-..-.+.. ........+-. ......+
T Consensus 140 d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~-------~~~~~~~ 199 (228)
T TIGR00478 140 DFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKE-------AIALALH 199 (228)
T ss_pred CceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHH-------HHHHHHH
Confidence 1 165555543 347888999999 65443 32222111000 00000111110 0112356
Q ss_pred HHHHHHHhcCCceeeEeeeC
Q 018576 324 EFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~~ 343 (353)
++..++.+.||++..+.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 200 KVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHcCCCeEeeEEECC
Confidence 67778888999988877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-06 Score=72.46 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=77.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCCC---CCCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQS---VPKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~~---~p~~-D~i 252 (353)
.+++.+||-||+|.|.++.++++..+--+++.+|+ +.+++.+++. +|++.+..|..+- .+.. |+|
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 34557999999999999999999988889999999 8888877652 7899999998762 3334 999
Q ss_pred EeccccccCCch---HHHHHHHHHHHhCCCCCEEEEE
Q 018576 253 FLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 253 ~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
++-.+=.. ... --..+++.++++|+|+|.++..
T Consensus 154 i~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 88755331 110 0258999999999999999988
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=72.67 Aligned_cols=104 Identities=12% Similarity=0.199 Sum_probs=75.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC----CCeEEEecch-HHHhhC----C--CCCCeeE--EeCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP----YIKGINFDQP-HVIEHA----P--LHPHIEH--VAGDMFQS 245 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~~-~~~~~a----~--~~~rv~~--~~~d~~~~ 245 (353)
..++..++ ....|+|+|||+|.-+..|++.+. ..+++.+|++ +.++.+ + ..+.+.+ +.+|+.++
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 456899999999998777777653 4679999983 455433 2 2355655 78888652
Q ss_pred ---CC-----CC-c-EEEeccccccCCchHHHHHHHHHHH-hCCCCCEEEE
Q 018576 246 ---VP-----KG-D-AIFLKWILHDWDDEHCLKLLKNCYK-SVPEDGKVIV 285 (353)
Q Consensus 246 ---~p-----~~-D-~i~~~~~Lh~~~~~~~~~~L~~~~~-~L~pgG~l~i 285 (353)
++ .. . ++++.+++.+++++++..+|+++++ .|+||+.|+|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 22 12 4 4566689999999999999999999 9999998887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.9e-06 Score=72.08 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=80.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
+..++...+ ....++|+|||.|.+ ...+|.+..++.|+ ...+..+++.........|+.. |.++. |..+
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky----~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKY----LGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred HHHHHhccC---CcceeeecccCCccc----CcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence 344444433 468999999999976 44458889999999 4556666654444677788887 66653 9999
Q ss_pred eccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 254 LKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
...++|+|+... ...+++++.+.++|||..+|.-...
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999998555 4599999999999999988765543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.8e-06 Score=78.31 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=76.7
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhcccc---CCCCeEEEEcCCchHHHHHHHHHC----CCCeEEEecc-hH
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGF---ANIKQLVDVGGNLGVTLQAITSKY----PYIKGINFDQ-PH 224 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 224 (353)
++-+++++-....|.+++. ..+.+..... .....|+|||||+|-++...++.. ...++..++- +.
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred HhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 5566777766666666552 2333333211 125789999999999987766553 4578999986 33
Q ss_pred HHhhC----CC---CCCeeEEeCCCCC-CCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 225 VIEHA----PL---HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 225 ~~~~a----~~---~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
.+... +. .++|+++.+|+.+ ..|+- |+|++-..=.....+-...+|....+.|+|||.++
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 22211 11 2789999999998 67765 99977644332223445677888899999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.9e-06 Score=78.47 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=67.9
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC-----C
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS-----V 246 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~-----~ 246 (353)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+. +
T Consensus 287 ~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 287 ARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence 34444444 4556899999999999999999875 58999998 7788776642 4699999998652 2
Q ss_pred CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 247 PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 247 p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
+.. |+|++.---. ....+++.+.+ ++|++.+++.
T Consensus 364 ~~~~fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 364 ALGGFDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hcCCCCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEE
Confidence 222 9988753321 12345555544 6887766653
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-06 Score=79.95 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEe---cc-hHHHhhCCCCCCeeEEeCCCC--C-CCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINF---DQ-PHVIEHAPLHPHIEHVAGDMF--Q-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~rv~~~~~d~~--~-~~p~~--D~i~~~~~Lh~ 260 (353)
..+.+||||||+|.++..++++. +..+-+ |. +..++.|.++. |-.+-+-+- . |+|.. |+|.++.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccccccc
Confidence 44689999999999999999973 333222 22 23344444331 322222221 2 77765 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|...+ ..+|-++-|+|||||++++.-+-.
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCcc
Confidence 98665 478999999999999999877643
|
; GO: 0008168 methyltransferase activity |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.7e-06 Score=82.82 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC---CCCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS---VPKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~---~p~~-D~i~~~~ 256 (353)
.+.+|||+|||+|.++..+++. ...+++++|. +.+++.++++ ++++++.+|+++. .+.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999999985 3447999999 6677766542 3799999998762 2233 9999852
Q ss_pred cccc--------CC-chHHHHHHHHHHHhCCCCCEEEEE
Q 018576 257 ILHD--------WD-DEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 257 ~Lh~--------~~-~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
--.. +. ......+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 2100 00 123467899999999999988764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=75.20 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCC------CCC-cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSV------PKG-DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~------p~~-D~i~ 253 (353)
++.+|||+|||+|.++...+.. +..+++.+|. +.+++.++++ ++++++.+|+++.. ... |+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 4458999998 6677666542 36899999998732 123 9999
Q ss_pred eccccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 254 LKWILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 254 ~~~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+.---..-+. .....+++.+.+.|+|||.|+....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8744211111 1234566678899999999997653
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.9e-05 Score=65.87 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeC----CCCCCC--CCC--cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAG----DMFQSV--PKG--DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~----d~~~~~--p~~--D~i 252 (353)
..+..+||+|||+|..+..++...|+.+++.+|. +..+..|.+ .+++..+.. |.+.+. +.+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999998 444554433 367777754 444433 234 888
Q ss_pred Eec--cccccCC----------------------chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLK--WILHDWD----------------------DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~--~~Lh~~~----------------------~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+++ ++.++=. -+....++.-+-|.|+|||.+.+.-.
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 876 3332200 01233556667889999998876443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=70.88 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=64.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 248 (353)
...+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345666555 6667899999999999999999874 46889998 667665543 3679999999987 5544
Q ss_pred CcEEEeccccccCCchHHHHHH
Q 018576 249 GDAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 249 ~D~i~~~~~Lh~~~~~~~~~~L 270 (353)
-|+|+++ .-++++.+...++|
T Consensus 102 ~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEec-CCcccCcHHHHHHH
Confidence 4877654 44456655555555
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.1e-05 Score=65.31 Aligned_cols=140 Identities=21% Similarity=0.215 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CC--eeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PH--IEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~r--v~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
..-.++|||||.|.....+.... =-+.+..|. -.|++.++.. +. +....+|-.. ++.++ |+|+++..+|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 34589999999999999998875 226788887 6788877764 43 3456666554 56665 999999999965
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc-----c-CHHHHHHHHHhcCCc
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE-----R-TKHEFMTLATGAGFS 335 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~-t~~~~~~ll~~aGf~ 335 (353)
++ ...-+.++..+|||+|.++-.-..- +. ...+.....+.-+.-. +|-. + -..++-.+|..|||+
T Consensus 151 Nd--LPg~m~~ck~~lKPDg~Fiasmlgg-dT-----LyELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 ND--LPGSMIQCKLALKPDGLFIASMLGG-DT-----LYELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred cc--CchHHHHHHHhcCCCccchhHHhcc-cc-----HHHHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 43 6788999999999999887533211 10 1111122222222111 2211 1 134677899999999
Q ss_pred eeeE
Q 018576 336 GIRS 339 (353)
Q Consensus 336 ~v~~ 339 (353)
...+
T Consensus 222 m~tv 225 (325)
T KOG2940|consen 222 MLTV 225 (325)
T ss_pred ccee
Confidence 7655
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.5e-05 Score=59.82 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=71.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchH-HHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCC---CC-cEEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGV-TLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVP---KG-DAIF 253 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p---~~-D~i~ 253 (353)
.+.+.++ -.+..++||||||+|. ++..|.+. +.+++++|. +..++.+++. .++++..|.+++-+ ++ |+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 3455555 3445899999999996 77777754 579999999 6677766653 57999999998533 34 9998
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
+... ..+...-+.++.+.+ |.-++|.....+
T Consensus 83 sirp-----p~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 83 SIRP-----PRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred EeCC-----CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 8754 456666677777754 466776655443
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=70.00 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCC---------CC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVP---------KG 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---------~~ 249 (353)
..++.+||+||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+-++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 44578999999999999999999874 679999998 666666654 2789999999876221 23
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+||+-.- .......+..+.+.|+|||.+++=+..
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 88887632 345678899999999999997764443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=77.71 Aligned_cols=98 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC-C---C--CCCeeEEeCCCCC---CCCCC--cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA-P---L--HPHIEHVAGDMFQ---SVPKG--DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~---~--~~rv~~~~~d~~~---~~p~~--D~i~~~~~ 257 (353)
....+||||||.|.++..+++.+|+..++|+|. ...+..+ + + ..++.++++|+.. .+|.+ |-|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 356899999999999999999999999999998 3333322 1 1 2578888887642 35554 76666544
Q ss_pred cccCCchH-------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 258 LHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 258 Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
= -|+... ...+|+.+++.|+|||.+.+..-
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 132111 24899999999999999998653
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.8e-06 Score=71.64 Aligned_cols=100 Identities=20% Similarity=0.290 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC---CCCC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ---SVPK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~-D~ 251 (353)
.+++.+||=||+|.|..+.++++..+-.+++.+|+ +.+++.+++ .+|++++.+|... ..++ . |+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 34689999999999999999987666678999999 777777755 2699999999876 3445 4 99
Q ss_pred EEeccccccCCch--HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 252 IFLKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 252 i~~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+.-..=-..+.. -...+++.+++.|+|||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8874332111111 13589999999999999999876
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=71.98 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC-C-CC-cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV-P-KG-DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~-p-~~-D~i~~~~~ 257 (353)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++. ++++++.+|+.+ .. . .. |+|++.--
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 3579999999999999999984 468999998 7778766542 579999999876 21 2 23 99888743
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.1e-05 Score=64.49 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=68.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCC----------------CCeeEEeCCCCCCCCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLH----------------PHIEHVAGDMFQSVPK 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~rv~~~~~d~~~~~p~ 248 (353)
+.++.+.||||+|+|.++..++.-. +....+|+|. ++.++.++++ .++.++.+|-....++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4567899999999999999888543 4445589997 8887766542 4688999998874443
Q ss_pred -C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 -G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 -~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ |.|.+.-. +.++.+++...|+|||+++|--
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEee
Confidence 3 99887732 3466777888999999999843
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00012 Score=61.51 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=81.7
Q ss_pred HHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CC-
Q 018576 170 MYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SV- 246 (353)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~- 246 (353)
.++.+.....++.+.+.-+++..+|+|+|+..|+++..+++.. ++.+++++|+.++- ..++|.++++|+.. +.
T Consensus 25 yRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 25 YRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTL 100 (205)
T ss_pred ccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHH
Confidence 3444555567788877645788999999999999999999987 45679999984432 24569999999987 32
Q ss_pred -------CC-C-cEEEecccc---ccC------CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 247 -------PK-G-DAIFLKWIL---HDW------DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 247 -------p~-~-D~i~~~~~L---h~~------~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+. . |+|++-..= -++ .-.-+..++.-+..+|+|||.+++-.+-
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 22 1 777743221 111 1222557788888899999999987654
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00084 Score=54.84 Aligned_cols=134 Identities=17% Similarity=0.218 Sum_probs=83.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC----C-CCeeEEeCCCCCCCC-CC-cEEEeccccccC
Q 018576 191 IKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL----H-PHIEHVAGDMFQSVP-KG-DAIFLKWILHDW 261 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~rv~~~~~d~~~~~p-~~-D~i~~~~~Lh~~ 261 (353)
+.-++|||||+|..+..|++.. |+..+...|+ |+.++...+ + -+++.+..|+.+.+. +. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999998876 8888999998 666554332 2 456788888887443 33 888887443222
Q ss_pred CchHH-------------------HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 262 DDEHC-------------------LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 262 ~~~~~-------------------~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
++++. .++|..+-..|.|.|.++++-... | ..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-------------------------N----~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-------------------------N----KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-------------------------c----CH
Confidence 22221 234444444445555555433211 1 24
Q ss_pred HHHHHHHHhcCCceeeEee---eCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDL---VTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~---~~~~~~vi~~~~ 353 (353)
+++-.+++.-||....... ....++++.+++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 5677788888988654432 234677776653
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=70.79 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCC-CC-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVP-KG-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p-~~-D~i~~~~~Lh 259 (353)
....|||||||||-+++--++.. ..++.++|.+++++.+++. +.|+++.+.+.+ .+| +. |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999888876 6789999998777766542 458999998888 777 44 9998776544
Q ss_pred cCC-chHHHHHHHHHHHhCCCCCEEE
Q 018576 260 DWD-DEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 260 ~~~-~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
.+- +.-...+|-.==+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 432 3334455555557899999876
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.1e-05 Score=71.37 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=65.8
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---C--CC
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---V--PK 248 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~--p~ 248 (353)
+...+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+. + ..
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcC
Confidence 334333 4566899999999999999999874 47999998 7788777652 5799999998642 1 12
Q ss_pred -C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 249 -G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
. |+|++.-.=-.+ ...+++.+.+ ++|++.+++
T Consensus 361 ~~~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 361 QIPDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEE
Confidence 2 888864321111 1355665553 788776555
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00031 Score=59.62 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=89.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCC---CCCCC--cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQ---SVPKG--DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~---~~p~~--D~i~ 253 (353)
.+++.+|||...|-|.++++.+++- ..+++-++- |.+++.|.-+ .+++.+.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 4578899999999999999988873 336766666 7788877654 358999999887 34543 7764
Q ss_pred eccc-cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhc
Q 018576 254 LKWI-LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGA 332 (353)
Q Consensus 254 ~~~~-Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 332 (353)
---- |..-..-....+-+++++.|+|||+++-..-.... .+ .|+. -.....+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~---------ry------------rG~d-~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK---------RY------------RGLD-LPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc---------cc------------ccCC-hhHHHHHHHHhc
Confidence 2100 00001223568999999999999999865432211 01 1211 244677889999
Q ss_pred CCceeeEeeeC
Q 018576 333 GFSGIRSDLVT 343 (353)
Q Consensus 333 Gf~~v~~~~~~ 343 (353)
||..++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988776553
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.3e-05 Score=61.55 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCCcEEEeccccccCCc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKGDAIFLKWILHDWDD 263 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~ 263 (353)
++.+|+|+|||||.+++..+-..| .+++++|+ |+.++.++++ .+|.|++.|+.+.-..-|.++++--+--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 467899999999999988776543 58999998 8888887764 5799999998753333377777755543321
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
..=..+|.++.+.- +.+. . =.+.-+.+.+....++.|+++...
T Consensus 124 haDr~Fl~~Ale~s---------~vVY----------------s--------iH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKALEIS---------DVVY----------------S--------IHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHHHhh---------heEE----------------E--------eeccccHHHHHHHHHhcCCeEEEE
Confidence 11135566555543 1100 0 011126777888899999887655
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.2e-05 Score=64.92 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=66.9
Q ss_pred hhHHHHHHhccccC--CCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC-------
Q 018576 176 LIMSNILESYKGFA--NIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS------- 245 (353)
Q Consensus 176 ~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~------- 245 (353)
..+.++.+.++-++ +..++||+||++|+++..++++. +..+++++|+..+ .....+.++.+|+.++
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhh
Confidence 34567777776333 45899999999999999999988 7789999998443 1123455555555431
Q ss_pred --CC---CC-cEEEeccccccC---------CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 246 --VP---KG-DAIFLKWILHDW---------DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 246 --~p---~~-D~i~~~~~Lh~~---------~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.+ .. |+|++-.....- +-+-+...|.-+...|+|||.+++--.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11 13 888776522111 112234555666677899999887554
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.4e-05 Score=69.91 Aligned_cols=102 Identities=19% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCe-EEEecchHHHh----hCCCC---CCeeEEeCCCCC---CCCCCcEEEeccccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIK-GINFDQPHVIE----HAPLH---PHIEHVAGDMFQ---SVPKGDAIFLKWILH 259 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~----~a~~~---~rv~~~~~d~~~---~~p~~D~i~~~~~Lh 259 (353)
+.+|||||.|.|.-+.++-.-+|+++ ++.++.+..+. ....+ ........|+.. ++|.+|.|++..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 56799999999999999999999985 56666532222 11111 223333444433 566678888877777
Q ss_pred cCCchH----HHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 260 DWDDEH----CLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 260 ~~~~~~----~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.+-... +...++++...+.|||.|+|+|...|.
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 654333 334899999999999999999976543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.8e-05 Score=65.08 Aligned_cols=89 Identities=12% Similarity=0.203 Sum_probs=67.7
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH---HHhhCCC---CCCeeEEeCCCCC-CCCCC-cEEEeccccccCCc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH---VIEHAPL---HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDD 263 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~ 263 (353)
+++|||+|.|.-++-++-.+|+.+++.+|. .. .++.+.. .++++++++.+.+ ..+.. |+|+++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 21 2222221 2679999998876 34444 9999997742
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
...++.-+...++|||+++..-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 4588999999999999998864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=62.03 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---C--CC-C-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---V--PK-G-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~--p~-~-D~i~~ 254 (353)
.+.+|||++||+|.++.+++.+.. .+++.+|. +.+++.+++. ++++++.+|.++. . .. . |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 367999999999999999999865 37999998 5555544431 4789999998652 1 11 2 66666
Q ss_pred ccccccCCchHHHHHHHHHHH--hCCCCCEEEEEeee
Q 018576 255 KWILHDWDDEHCLKLLKNCYK--SVPEDGKVIVVELM 289 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~~ 289 (353)
---... .....++..+.. .|+++|. +++|..
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~i-iv~E~~ 160 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVL-IVVEED 160 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeE-EEEEec
Confidence 544432 223344554433 5667665 445543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0001 Score=66.27 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=54.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~ 244 (353)
..++++.+. ..++..+||.+||.|+.+..+++.+| +.+++++|. +++++.+++. +|+.++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 456777776 56667999999999999999999996 789999999 8888877653 478888888865
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00074 Score=61.25 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCC--CC-cEEEeccccccCCchH
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVP--KG-DAIFLKWILHDWDDEH 265 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p--~~-D~i~~~~~Lh~~~~~~ 265 (353)
.++.++|||||++|+++..++++ +.+++++|...+-......++|.+..+|.+...| .. |.+++-.+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC------
Confidence 46789999999999999999998 5699999987777777778999999999988443 33 9988887743
Q ss_pred HHHHHHHHHHhCCCC-CEEEEEeeecC
Q 018576 266 CLKLLKNCYKSVPED-GKVIVVELMLP 291 (353)
Q Consensus 266 ~~~~L~~~~~~L~pg-G~l~i~e~~~~ 291 (353)
..++++-+.+.|..| .+-.|...-.|
T Consensus 282 P~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 282 PARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred HHHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 246677777788777 45555555444
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=67.98 Aligned_cols=90 Identities=9% Similarity=-0.038 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC---CC-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP---KG-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p---~~-D~i~~~~~L 258 (353)
+..+|||++||+|.++..++.. ..+++++|. +.+++.+++. ++++++.+|+.+..+ .. |+|++.--=
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999864 468999998 6777766542 478999999865221 22 988887442
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
-.+ ..++++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 111 134455554 46887665553
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0004 Score=60.85 Aligned_cols=92 Identities=15% Similarity=0.287 Sum_probs=62.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCC----CCCCeeEEeCCCCC-CCCC--C-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP----LHPHIEHVAGDMFQ-SVPK--G- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~rv~~~~~d~~~-~~p~--~- 249 (353)
...+++... ..+..+|||||+|.|.++..|+++...+.++-+| +.+++..+ ..++++.+.+|+.+ +++. .
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 456777666 5668899999999999999999997654444444 33333333 34789999999998 7775 3
Q ss_pred cEEEeccccccCCchHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKN 272 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~ 272 (353)
+.|+ ++.=++++.+-..++|..
T Consensus 97 ~~vV-aNlPY~Isspii~kll~~ 118 (259)
T COG0030 97 YKVV-ANLPYNISSPILFKLLEE 118 (259)
T ss_pred CEEE-EcCCCcccHHHHHHHHhc
Confidence 4444 445555665544444444
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0021 Score=56.92 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HH-------HhhCC---C---------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HV-------IEHAP---L--------------------------- 231 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~-------~~~a~---~--------------------------- 231 (353)
...+||-=|||.|.++-+++.. +..+.+.+.+ .| +.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 4566666642 11 11111 1
Q ss_pred ---------CCCeeEEeCCCCC-CCCC---C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC
Q 018576 232 ---------HPHIEHVAGDMFQ-SVPK---G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT 296 (353)
Q Consensus 232 ---------~~rv~~~~~d~~~-~~p~---~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~ 296 (353)
..++....|||.+ .-+. + |+|+..+.+.- ...+.+.|+.|.+.|||||..+=.-+..-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~--- 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHF--- 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccC---
Confidence 0247788899988 2222 3 99988877743 4668899999999999999555443332110
Q ss_pred ccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 297 SIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
.+.. ......-+.+.+|+..+.+..||++++...
T Consensus 209 ---------~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 ---------EPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 000112467899999999999999876544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=61.92 Aligned_cols=75 Identities=15% Similarity=0.279 Sum_probs=59.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 248 (353)
...|+...+ ..+...||+||.|||.++..++++ +.+++.++. |.+++...++ .+.+.+.+|+++ ++|.
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 456777676 788899999999999999999998 567888887 6666654432 568999999998 8887
Q ss_pred CcEEEec
Q 018576 249 GDAIFLK 255 (353)
Q Consensus 249 ~D~i~~~ 255 (353)
-|.++.+
T Consensus 124 fd~cVsN 130 (315)
T KOG0820|consen 124 FDGCVSN 130 (315)
T ss_pred cceeecc
Confidence 6777664
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00057 Score=58.26 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=84.6
Q ss_pred EEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCC---CcEEEeccccccCC
Q 018576 194 LVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPK---GDAIFLKWILHDWD 262 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~---~D~i~~~~~Lh~~~ 262 (353)
|.||||-.|.+...|++....-+++..|+ +..++.|++ .++|++..+|-++.++. .|.|++... .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999998 666666654 27899999998875543 377776644 3
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
-.-..++|.+....++...+|+++-. .....+++||.+.||.+++-.-+
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 45577888888777766556665221 12557899999999998865443
Q ss_pred ---CCceEEEEEe
Q 018576 343 ---TGNFWVMEFY 352 (353)
Q Consensus 343 ---~~~~~vi~~~ 352 (353)
+-.+-+|.+.
T Consensus 126 ~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 126 EENGRFYEIIVAE 138 (205)
T ss_dssp EETTEEEEEEEEE
T ss_pred eECCEEEEEEEEE
Confidence 2345566553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00092 Score=55.16 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=85.0
Q ss_pred ccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhC-----------CC--CCCeeEEeCCCCC-CCCCC-c
Q 018576 187 GFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHA-----------PL--HPHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----------~~--~~rv~~~~~d~~~-~~p~~-D 250 (353)
+++.+..|+|+=.|.|.++.-|.... |.-.+..+-..+...-+ ++ ..+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37788999999999999999888865 55555544433332111 11 1344444444444 33333 6
Q ss_pred EEEeccccccC-----CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHH
Q 018576 251 AIFLKWILHDW-----DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEF 325 (353)
Q Consensus 251 ~i~~~~~Lh~~-----~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 325 (353)
+++....-|++ ......++.+.++++|||||.+++.|+......... +-. . -+ .+...-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------dt~-~----~~-ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------DTI-T----LH-RIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------hhh-h----hc-ccChHHH
Confidence 66554333332 134567999999999999999999998765432211 100 0 11 2345667
Q ss_pred HHHHHhcCCceeeE
Q 018576 326 MTLATGAGFSGIRS 339 (353)
Q Consensus 326 ~~ll~~aGf~~v~~ 339 (353)
.+..+.+||+..-.
T Consensus 190 ~a~veaaGFkl~ae 203 (238)
T COG4798 190 IAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHhhcceeeee
Confidence 77888899987543
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0032 Score=58.64 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCchHHHHHH--------HHH-------CCCCeEEEecchH----H----HhhCCC------------CCC
Q 018576 190 NIKQLVDVGGNLGVTLQAI--------TSK-------YPYIKGINFDQPH----V----IEHAPL------------HPH 234 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~----~----~~~a~~------------~~r 234 (353)
+..+|+|+|||+|.++..+ .++ .|..++..-|+|. . +...++ ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999766543 222 2567888888751 1 111000 011
Q ss_pred ---eeEEeCCCCC-CCCCC--cEEEeccccccCCc--h----------------------------------HHHHHHHH
Q 018576 235 ---IEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD--E----------------------------------HCLKLLKN 272 (353)
Q Consensus 235 ---v~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~--~----------------------------------~~~~~L~~ 272 (353)
+.-++|.|.+ -+|.+ +++++++.||.++. + +...+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2345578888 68876 99999999998762 1 11234444
Q ss_pred HHHhCCCCCEEEEEeeecCC
Q 018576 273 CYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 273 ~~~~L~pgG~l~i~e~~~~~ 292 (353)
=.+-|.|||+++++-...+.
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 45668999999998877653
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=59.47 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=84.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH---HHhhCCC---CCCeeEEeCCCCC-C-CCC-CcEEEecccccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH---VIEHAPL---HPHIEHVAGDMFQ-S-VPK-GDAIFLKWILHD 260 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~rv~~~~~d~~~-~-~p~-~D~i~~~~~Lh~ 260 (353)
+.+++|||+|.|.-+.-++-.+|+.+++.+|. .. -++.+.. .++++++++.+.+ . .+. -|+|+++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 68999999999999999999999999999997 22 2333322 3779999988876 2 223 5999988663
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
....++.-+...+++||.++..-.. .++. -..+.+.....-||...++.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~~--------------------------~~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKGL--------------------------AGKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhhhHH--------------------------hhhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2457788888899999887652211 1111 13355566666788887777
Q ss_pred eeC
Q 018576 341 LVT 343 (353)
Q Consensus 341 ~~~ 343 (353)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 653
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00076 Score=54.08 Aligned_cols=95 Identities=18% Similarity=0.273 Sum_probs=62.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH----CCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-CCCCC-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSK----YPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~~p~~-D~ 251 (353)
..+..+|+|+|||.|.++..++.. .|+++++++|. +..++.+.++ .++++..++... ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 27899999998 5455544331 456666666554 22333 77
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++.-++.-++++ .+|+...+ |+...+++-++
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEEEcCC
Confidence 776666655543 55555444 66666655444
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00061 Score=63.90 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=68.2
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC--C-CcEEEecccccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP--K-GDAIFLKWILHD 260 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p--~-~D~i~~~~~Lh~ 260 (353)
..+|||++||+|.+++.++...+..+++++|. +..++.++++ +++.+..+|+...+. . .|+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999999887668999998 6777666542 456788888865222 2 29998853 2
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.. ...++..+.+.++|||.+.+.
T Consensus 135 -Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 22 246788877889999999998
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0027 Score=51.13 Aligned_cols=95 Identities=14% Similarity=0.246 Sum_probs=64.3
Q ss_pred EEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC---CC---eeEEeCCCCC---CCCC--C-cEEEeccccc
Q 018576 194 LVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH---PH---IEHVAGDMFQ---SVPK--G-DAIFLKWILH 259 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~r---v~~~~~d~~~---~~p~--~-D~i~~~~~Lh 259 (353)
++|+|||+|... .+....+. ..++++|. +.++..++.. .. +.+...|... ++.. . |++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 34443333 47888888 5455543321 11 5777777654 3443 3 888 444444
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
++.+ ....++++.+.++|+|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4433 578999999999999999998876543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00088 Score=59.73 Aligned_cols=96 Identities=13% Similarity=0.267 Sum_probs=65.1
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC----CCCCeeEEeCCCCC-CCCC--
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP----LHPHIEHVAGDMFQ-SVPK-- 248 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~rv~~~~~d~~~-~~p~-- 248 (353)
....+++.+. ..+...|||||+|+|.++..|++.. .++++++. +..++..+ ..++++++.+|+.+ ..+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 3456777776 6788999999999999999999987 67888887 44444333 35899999999998 5554
Q ss_pred --CcEEEeccccccCCchHHHHHHHHHHHhCCC
Q 018576 249 --GDAIFLKWILHDWDDEHCLKLLKNCYKSVPE 279 (353)
Q Consensus 249 --~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~p 279 (353)
....+..+.=++.+ ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence 33344444433433 3566666654333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00044 Score=57.38 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=64.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHh-------hCCCC------CCeeEEeCCCCCCCCC----C---
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE-------HAPLH------PHIEHVAGDMFQSVPK----G--- 249 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~~------~rv~~~~~d~~~~~p~----~--- 249 (353)
..-+.|||||-|.++..|...||+.-+.|.++ ..+.+ .++.. .++.....+.+.-.|+ +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 45799999999999999999999999999987 33333 22221 4456665555543332 2
Q ss_pred cEEEeccccccCCch-----HHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 DAIFLKWILHDWDDE-----HCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~-----~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
-..++.--=|.+... -...++.+..=+|++||.++.+.-+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 222222222322211 1246788888899999999987754
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.014 Score=50.09 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=95.6
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc--hHHHhhCCCCCCeeEEeC-CCCCC----CCCC
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ--PHVIEHAPLHPHIEHVAG-DMFQS----VPKG 249 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~-d~~~~----~p~~ 249 (353)
.....++.|.-...+..+||||..||+|+..++++- ..++.++|. .+.....+..+||..++. |+..- +.+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccC
Confidence 345566666622467899999999999999999863 457888887 455566677788777664 44322 2222
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe-eecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE-LMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|++++--.+- ....+|-.+...++|++-++..- +-....+.. ........+ +........++.+
T Consensus 145 ~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~ 210 (245)
T COG1189 145 PDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIEN 210 (245)
T ss_pred CCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHH
Confidence 7777765442 24688999999999998666532 222111100 000000111 1122334678899
Q ss_pred HHHhcCCceeeEeeeC
Q 018576 328 LATGAGFSGIRSDLVT 343 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~ 343 (353)
++++.||+...+.+.+
T Consensus 211 ~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 211 FAKELGFQVKGLIKSP 226 (245)
T ss_pred HHhhcCcEEeeeEccC
Confidence 9999999998887653
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00017 Score=46.96 Aligned_cols=46 Identities=28% Similarity=0.420 Sum_probs=39.8
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence 45788888764 57899999999999 999999999999999999974
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=54.84 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=61.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCe---------EEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIK---------GINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK- 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~- 248 (353)
+.+...|+|-=||+|+++++.+...++.. +++.|. +.+++.++++ ..+.+...|+.+ +.+.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 66778999999999999998887766666 899998 6677666542 458999999988 6443
Q ss_pred C-cEEEecccccc-CCc-hH----HHHHHHHHHHhCCCC
Q 018576 249 G-DAIFLKWILHD-WDD-EH----CLKLLKNCYKSVPED 280 (353)
Q Consensus 249 ~-D~i~~~~~Lh~-~~~-~~----~~~~L~~~~~~L~pg 280 (353)
. |+|++.--.-. ... .+ ..++++++.++|+|.
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 3 99988754332 111 11 246788888899983
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=59.16 Aligned_cols=94 Identities=22% Similarity=0.375 Sum_probs=71.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC-------------CCCeeEEeCCCCCCCC---CC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL-------------HPHIEHVAGDMFQSVP---KG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~p---~~- 249 (353)
++..++|-+|||.|-.++++.+ ||+ -+++.+|+ |.|++.++. .+|++.+..|.++-.. +.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4567999999999999999876 785 47899999 899998873 1789999999987322 22
Q ss_pred cEEEeccccccCCchH--------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDEH--------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~--------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.|+.- ++|+. ...+-+-++++|+++|.++++-.
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 766653 33322 24677788899999999998654
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00053 Score=63.46 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HHHhhCCC-------CCCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HVIEHAPL-------HPHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
+...++|+|||.|.....+.. +-..+.+++|.. ..+..+.. +.+..++..|+.. +++++ |.+-+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 345899999999999888776 446788888873 33333322 2455668889888 77765 999888888
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
.+.++ ...++++++++++|||+.++.|.+....
T Consensus 189 ~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 88765 4689999999999999999999876543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0058 Score=54.29 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------CCCeeEEeCCCCCCC----------CCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------HPHIEHVAGDMFQSV----------PKG 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~----------p~~ 249 (353)
.+..+|+.+|||-=.....+... +++++.-+|.|++++..++ .++++++..|+...+ |..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999988776666321 3588999999988864432 367899999986322 112
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~~~ 327 (353)
-++++-.++.+++.+++.++|+.+.+...||+.++ .|...+-.... ............. ....+-....+.+++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGEW-RAGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchhH-HHHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 58888899999999999999999999988888777 45443311100 0000000000000 00000011246789999
Q ss_pred HHHhcCCceeeE
Q 018576 328 LATGAGFSGIRS 339 (353)
Q Consensus 328 ll~~aGf~~v~~ 339 (353)
+|++.||+....
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0023 Score=57.17 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=72.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHC--------------------CCCeEEEecc---hHHHhhCCC----------------
Q 018576 191 IKQLVDVGGNLGVTLQAITSKY--------------------PYIKGINFDQ---PHVIEHAPL---------------- 231 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~---------------- 231 (353)
..+||.||||.|.-..+++..+ |.++++.+|+ ..++.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998777776655 2368899997 344443211
Q ss_pred -----C--CCeeEEeCCCCC-CCC--------CC-cEEEeccccccC---CchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 232 -----H--PHIEHVAGDMFQ-SVP--------KG-DAIFLKWILHDW---DDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 232 -----~--~rv~~~~~d~~~-~~p--------~~-D~i~~~~~Lh~~---~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
. =.+.|.+.|+.+ ..+ .. ++|++-++++.+ +..+-.++|.++-+.++||..|+|+|..-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 147899999987 221 13 888888887653 34456799999999999999999999743
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0034 Score=60.37 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=70.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---CCCCC-cEEE--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---SVPKG-DAIF-- 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~-D~i~-- 253 (353)
..++.+|||+++|.|.=+..++....+ ..++..|+ +.-++..++ ..++.+...|... .++.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998854 57899997 443433322 1557777777654 23333 7777
Q ss_pred --ecc---------ccccCCchHH-------HHHHHHHHHhCCCCCEEEEEeee
Q 018576 254 --LKW---------ILHDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 254 --~~~---------~Lh~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+. +...|+.+.+ .++|.++.+.|||||+|+-+..+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 331 1223443332 58999999999999999776654
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.03 Score=46.83 Aligned_cols=136 Identities=12% Similarity=0.095 Sum_probs=94.5
Q ss_pred HhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-----hHHHhhCCCCCCeeEEeCCCCCCCC-----CC-cE
Q 018576 183 ESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-----PHVIEHAPLHPHIEHVAGDMFQSVP-----KG-DA 251 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~ 251 (353)
+.++ ++++.+||=+|..+|+...++..-.++-.+.+++. .+.+..+++++++--+-+|+..|.. +. |+
T Consensus 70 ~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 70 KNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred ccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccE
Confidence 3455 78899999999999999999999888666667775 3567788888999999999876532 23 87
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
|+.-=. . .+++.-+..++..-|++||++++.=-....+... .... ...+-.+.|++
T Consensus 149 iy~DVA---Q-p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~-------------------dp~~-vf~~ev~kL~~ 204 (231)
T COG1889 149 IYQDVA---Q-PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA-------------------DPEE-VFKDEVEKLEE 204 (231)
T ss_pred EEEecC---C-chHHHHHHHHHHHhcccCCeEEEEEEeecccccC-------------------CHHH-HHHHHHHHHHh
Confidence 765422 1 3556778889999999999888765443322111 0111 12223345788
Q ss_pred cCCceeeEeeeC
Q 018576 332 AGFSGIRSDLVT 343 (353)
Q Consensus 332 aGf~~v~~~~~~ 343 (353)
.||++.++..+.
T Consensus 205 ~~f~i~e~~~Le 216 (231)
T COG1889 205 GGFEILEVVDLE 216 (231)
T ss_pred cCceeeEEeccC
Confidence 999999887765
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00059 Score=56.79 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCC--C-cEEEeccccccCCch
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPK--G-DAIFLKWILHDWDDE 264 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~--~-D~i~~~~~Lh~~~~~ 264 (353)
..+.++||+|.|.|..+..++..+.. +...++ ..|..+.++. +.+.... .+-+.. . |+|.|.+.|.-..+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynVl~~--~ew~~t~~k~dli~clNlLDRc~~- 184 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNVLTE--IEWLQTDVKLDLILCLNLLDRCFD- 184 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCceeee--hhhhhcCceeehHHHHHHHHhhcC-
Confidence 35689999999999998888766543 233334 2344444332 1221111 111111 1 99999999976544
Q ss_pred HHHHHHHHHHHhCCC-CCEEEEEeeecCC-CCCCccccccccccchhhhhhCCCCccc--CHHHHHHHHHhcCCceeeEe
Q 018576 265 HCLKLLKNCYKSVPE-DGKVIVVELMLPE-VPNTSIESKSNSHIDVLMMTQNPGGKER--TKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 265 ~~~~~L~~~~~~L~p-gG~l~i~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~--t~~~~~~ll~~aGf~~v~~~ 340 (353)
.-++|+.++.+|+| .|++++.=...-. ...... .-....-+. .+. . +|+.+ ....+.++|+++||.+....
T Consensus 185 -p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~-~g~~~rPdn-~Le-~-~Gr~~ee~v~~~~e~lr~~g~~veawT 259 (288)
T KOG3987|consen 185 -PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNT-SGLPLRPDN-LLE-N-NGRSFEEEVARFMELLRNCGYRVEAWT 259 (288)
T ss_pred -hHHHHHHHHHHhccCCCcEEEEEEecccceeecCC-CCCcCCchH-HHH-h-cCccHHHHHHHHHHHHHhcCchhhhhh
Confidence 36999999999999 6887764322110 000000 000000111 111 1 44432 23356788999999987665
Q ss_pred ee
Q 018576 341 LV 342 (353)
Q Consensus 341 ~~ 342 (353)
..
T Consensus 260 rl 261 (288)
T KOG3987|consen 260 RL 261 (288)
T ss_pred cC
Confidence 54
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00087 Score=51.51 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 24 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
-..++|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+|+.. +.|. ...|++++
T Consensus 8 ~~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~-r~Gr-~~~Y~l~~ 75 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES---GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDR-KQGK-WVHYRLSP 75 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-EEcC-EEEEEECc
Confidence 445677777899999999864 48999999999999 899999999999999999987 3442 45677654
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00031 Score=56.08 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=66.3
Q ss_pred CCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------CCCeeEEeCCCCC--CCC-C-C-cEEEe
Q 018576 191 IKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------HPHIEHVAGDMFQ--SVP-K-G-DAIFL 254 (353)
Q Consensus 191 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~--~~p-~-~-D~i~~ 254 (353)
+.+||++|+| +|-.++-++...|...+-+.|- ...++..++ ..++..+..+... .+. . . |+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 5799999999 5556666677778888888886 445554433 1344444444333 122 2 2 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..++.. ++....+.+.|...|+|.|+-++.-
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 999965 6777899999999999999866544
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0053 Score=50.47 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=68.3
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeC-CCCCC------
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAG-DMFQS------ 245 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~-d~~~~------ 245 (353)
+....-++-+.+.-+.+..+|||+||..|.++.-..++. |+-.+.++|+-+.. .-..+.++.+ |+.+|
T Consensus 53 sAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 53 SAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred hhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHH
Confidence 333344555666635678999999999999999888887 99999999973221 1133444444 44332
Q ss_pred ---CCCC--cEEEecccc---------ccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 246 ---VPKG--DAIFLKWIL---------HDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 246 ---~p~~--D~i~~~~~L---------h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.|.- |+|++-..= |.-.-+-|..+|.-....++|+|.+++--+..
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 1221 555543221 11112234556666667778899888765543
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0011 Score=49.23 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=51.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-.+..|+..|..+ +++++.+|++.+++ .+..+.+.|+.|...|+|... +.|. ...|++++..
T Consensus 12 ptRr~IL~lL~~~---e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~sr-K~Gr-~vyY~Ln~~~ 73 (108)
T PHA00738 12 ILRRKILELIAEN---YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELY-KEGR-TLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHHc---CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEE-EECC-EEEEEECCCc
Confidence 3678899999884 37999999999999 999999999999999999988 5553 5667766443
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00057 Score=43.45 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=39.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
++.|+..|.+ +|.++.||++.+|+ .+..+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGL----SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhccc----cchHHHHHHHHHHHCcCeeC
Confidence 5677888888 59999999999999 99999999999999999974
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00091 Score=45.16 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=46.4
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.+|.--.++.|+..|... +|.|+.|||+.+|+ ++..+.+.|+.|...|+|+..
T Consensus 4 ~~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN---GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 4566667889999999443 59999999999999 999999999999999999986
|
... |
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.002 Score=44.54 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHhChhhhhhhcCCCC-CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 32 VYELGIFQIIDKAGPGA-KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~-~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
..+-.|+..|...| + +.|+.|||+.+|+ +...++|+|..|...|+|.+.. + .+..|.++.
T Consensus 6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~--~-~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG--DETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG--G-TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC--CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC--C-CCCceEeec
Confidence 35667888898874 2 2999999999999 8999999999999999999862 1 246787663
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0044 Score=56.01 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecchHHHhhCCC----C-----CCeeEEeCCCCC-CCCC-----C----
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQPHVIEHAPL----H-----PHIEHVAGDMFQ-SVPK-----G---- 249 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~----~-----~rv~~~~~d~~~-~~p~-----~---- 249 (353)
+..+|+-+|||-=.-+-.+ ..| .+++.-+|.|++++..++ . .++++++.|+.+ +++. |
T Consensus 92 g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 3689999999966443333 233 478899999999886544 2 379999999995 5431 1
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcc-ccccccccchhhhhhCCCCcccCHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSI-ESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
-++++-.+|.+++.+++.++|..|.....||..++......+....... ...............-+.-......++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 5888999999999999999999999999999988876642111100000 0000000000000000011123478999
Q ss_pred HHHHhcCCceeeE
Q 018576 327 TLATGAGFSGIRS 339 (353)
Q Consensus 327 ~ll~~aGf~~v~~ 339 (353)
.++.+.||..+..
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 9999999998766
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.026 Score=51.47 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=72.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeC-CCCC-CCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAG-DMFQ-SVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~-d~~~-~~p~~--D~i~~~~ 256 (353)
..++..|||==||||+++++..-. +++++|.|+ ..|++-++.+ ....+... |+.. ++++. |.|.+--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456779999999999999988765 789999999 5677777654 34444554 8877 77764 7776532
Q ss_pred c------cccCC-chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 257 I------LHDWD-DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~------Lh~~~-~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
- ..-.. ++-..++|..+.++|++||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11111 34467999999999999999998654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0021 Score=52.78 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=72.5
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCCcEEEeccccccCCc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKGDAIFLKWILHDWDD 263 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~ 263 (353)
..+.|+|.|+|-++.-.++. .-+++.++. |...+.+.++ .++..+++|..+ .+..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68899999999988776665 457888887 6666555553 679999999998 7756699987654333334
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++-+.+++.+..-||-++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 55678999999999999888766544
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.02 Score=51.08 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=93.2
Q ss_pred HHHHHHhccc---cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc------hHHHhhCCC-----------------
Q 018576 178 MSNILESYKG---FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ------PHVIEHAPL----------------- 231 (353)
Q Consensus 178 ~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~----------------- 231 (353)
++.+.+.+|. .....+||-=|||.|.++..|+...+.+++--+-. .-++...+.
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~ 214 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSL 214 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccc
Confidence 4445555552 12357999999999999999999877766521110 111111110
Q ss_pred ----------------------CCCeeEEeCCCCCC--CCC--C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEE
Q 018576 232 ----------------------HPHIEHVAGDMFQS--VPK--G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 232 ----------------------~~rv~~~~~d~~~~--~p~--~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l 283 (353)
.+......|||.+- .+. + |+|+..+.+.- ...+...|..|...|+|||..
T Consensus 215 ~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 215 SRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVW 292 (369)
T ss_pred ccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEE
Confidence 01234466888873 333 2 88888866643 456789999999999999998
Q ss_pred EEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 284 IVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 284 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
+=+-+..-.-. ...+.. ...+-+.|.+++..+.+.-||++++-..+
T Consensus 293 iNlGPLlYHF~---------d~~g~~----~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 293 INLGPLLYHFE---------DTHGVE----NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred Eeccceeeecc---------CCCCCc----ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 86665432110 000000 01244678999999999999998765543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.018 Score=49.01 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=87.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-h----HHHhhCCCCCCeeEEeCCCCCCCC-----CC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-P----HVIEHAPLHPHIEHVAGDMFQSVP-----KG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~----~~~~~a~~~~rv~~~~~d~~~~~p-----~~-D~i~~~ 255 (353)
+.++.+||-+|.++|++..++..-. |+-.+.+++. + +.+..|+++++|--+-.|...|.. +. |+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6788999999999999999998865 4777888886 3 556778888999999999876422 23 877665
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
=. + .++.+-++.++..-||+||.+++.=-....+.. ....-...+=.+.|++.||+
T Consensus 151 Va-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t--------------------~~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q---PDQARIAALNARHFLKPGGHLIISIKARSIDST--------------------ADPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS--------------------SSHHHHHHHHHHHHHCTTCE
T ss_pred CC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCc--------------------CCHHHHHHHHHHHHHHcCCC
Confidence 33 2 255778889999999999999986433211100 00001122334567888999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
..+...+.
T Consensus 207 ~~e~i~Le 214 (229)
T PF01269_consen 207 PLEQITLE 214 (229)
T ss_dssp EEEEEE-T
T ss_pred hheEeccC
Confidence 98888774
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0028 Score=49.82 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC---cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG---DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~---D~i~~~~~L 258 (353)
++..++|+|||.|-+. ++-.+|. -.++|+|+ |+.++.++++ -++++.+.|+.++.+.+ |..+++.-+
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4689999999999988 3444444 46899999 8899988875 24678888887754432 666666544
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.024 Score=48.10 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC----C---CCCeeEEeCCCCCCCC-C-C-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP----L---HPHIEHVAGDMFQSVP-K-G-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~---~~rv~~~~~d~~~~~p-~-~-D~i~~~~~L 258 (353)
...++.||||-.|.+.+.+++..|...++..|. +...+.|. + .++++...+|-+.++. + . |++++..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 445699999999999999999999999999997 44444332 2 2789999999887543 3 2 8777664
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
+.-.-+..+|.+-...|+.--++++.- +. ...++++||.+.+|.++.
T Consensus 94 --MGG~lI~~ILee~~~~l~~~~rlILQP----------------------------n~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 --MGGTLIREILEEGKEKLKGVERLILQP----------------------------NI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred --CcHHHHHHHHHHhhhhhcCcceEEECC----------------------------CC---CHHHHHHHHHhCCceeee
Confidence 334556788888777776434555421 11 245678888888888765
Q ss_pred Ee
Q 018576 339 SD 340 (353)
Q Consensus 339 ~~ 340 (353)
-.
T Consensus 141 E~ 142 (226)
T COG2384 141 ET 142 (226)
T ss_pred ee
Confidence 43
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0013 Score=55.81 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC--cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG--DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~--D~i~~~~~L 258 (353)
.++..|+|.-||.|.+++.+++..+..+++..|+ |..++..++ ..++..+.+|..+-.+.. |-|++...-
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~ 179 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPE 179 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TS
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChH
Confidence 4678999999999999999999777888999999 666654433 267899999987733333 988886532
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
+ ...+|..+.+.+++||.+.
T Consensus 180 ~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 S------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S------GGGGHHHHHHHEEEEEEEE
T ss_pred H------HHHHHHHHHHHhcCCcEEE
Confidence 2 2467888888999888763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0045 Score=54.98 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCch-HHHHHHHHHC-CCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCC-CCC-CC-cEEEec
Q 018576 190 NIKQLVDVGGNLG-VTLQAITSKY-PYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQ-SVP-KG-DAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G-~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~p-~~-D~i~~~ 255 (353)
.+.+|+=||||.= -.++.+++.+ ++..++++|. ++.++.+++ ..++.|+.+|..+ ... .. |+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4579999999954 5666666654 6788999998 666666643 2689999999876 322 23 988887
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
...- .+.++..++|.++.+.|+||+.+++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654 23345679999999999999988875
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.01 Score=51.08 Aligned_cols=98 Identities=14% Similarity=0.260 Sum_probs=75.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC----CeEEEecchH-HHh-----hCCCCCC--eeEEeCCCCC---CCCCC---
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY----IKGINFDQPH-VIE-----HAPLHPH--IEHVAGDMFQ---SVPKG--- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~-~~~-----~a~~~~r--v~~~~~d~~~---~~p~~--- 249 (353)
..+...++|+|+|+..-+.-|+..+.+ .+++-+|+.. +++ ..++++. |.-+++|+.. ..|..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345789999999999988888887755 7899999843 332 2233455 4556778765 34443
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
=.+++..+|-+++.++|..+|..++.+|+||-++++
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 566788999999999999999999999999988887
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0029 Score=46.35 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=46.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
-+.|++.|...+ +++|+.|||+.+++ +..-+.|.|+.|+..|++.+.. .++.|.+++
T Consensus 7 ~~~Il~~l~~~~--~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~----~~~~y~l~~ 63 (91)
T smart00346 7 GLAVLRALAEEP--GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG----QNGRYRLGP 63 (91)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC----CCCceeecH
Confidence 356778887642 48999999999999 9999999999999999999752 245677664
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0024 Score=59.45 Aligned_cols=51 Identities=8% Similarity=0.101 Sum_probs=41.8
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ 244 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 244 (353)
.+|||++||+|.++..+++... +++++|. +++++.+++. ++++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999998 7778777653 468888888754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0038 Score=45.01 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=39.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
++.|.++||+.+++ ++..++++++.|...|+++.. .|. ++.|.++....
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~--~G~-~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESS--RGR-GGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE--TST-TSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEec--CCC-CCceeecCCHH
Confidence 46999999999999 999999999999999999876 343 57788774433
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0035 Score=57.37 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=65.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHH-------CCCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCC-CC-C--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSK-------YPYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQ-SV-P-- 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~-p-- 247 (353)
.....+|+|-.||+|.++.++.+. .+..++.|+|. +.++..++- ........+|.+. +. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456679999999999999998874 47788999998 555544331 1334688888876 32 2
Q ss_pred CC-cEEEeccccccC--Cch-----------------HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 248 KG-DAIFLKWILHDW--DDE-----------------HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~--~~~-----------------~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.. |+|+++--+-.. .+. .--.++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 23 988887333221 111 112588999999999999877664
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.033 Score=51.38 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHH--------HC--------CCCeEEEecchH--HHhhCCC----------CCC--eeE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITS--------KY--------PYIKGINFDQPH--VIEHAPL----------HPH--IEH 237 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~--~~~~a~~----------~~r--v~~ 237 (353)
.++..+|+|+||.+|..+..+.. ++ |.++++.-|+|. --...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999998875442 22 345778888741 1111110 122 345
Q ss_pred EeCCCCC-CCCCC--cEEEeccccccCCc-------------------------hH------------HHHHHHHHHHhC
Q 018576 238 VAGDMFQ-SVPKG--DAIFLKWILHDWDD-------------------------EH------------CLKLLKNCYKSV 277 (353)
Q Consensus 238 ~~~d~~~-~~p~~--D~i~~~~~Lh~~~~-------------------------~~------------~~~~L~~~~~~L 277 (353)
+++.|.. -+|.+ |++++++.||.++. +. ...+|+.=.+=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6789998 68876 99999999998762 01 112333334557
Q ss_pred CCCCEEEEEeeecCC
Q 018576 278 PEDGKVIVVELMLPE 292 (353)
Q Consensus 278 ~pgG~l~i~e~~~~~ 292 (353)
+|||+++++-...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999999988766
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0027 Score=50.82 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=40.2
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCC
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMF 243 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~ 243 (353)
.++|||||.|.++..+++.+|..+++++|. |.+.+.+++. +++.+++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999999999998 6666655432 45666665554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.025 Score=47.73 Aligned_cols=101 Identities=14% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-----CCCeeEEeCCC---CCCCCCC--cEEEec-cc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-----HPHIEHVAGDM---FQSVPKG--DAIFLK-WI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d~---~~~~p~~--D~i~~~-~~ 257 (353)
.++.|||.||=|-|-....+.++-|..+.+.---|++.++.+. ..+|....+-. ...+|.+ |-|+.- +.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 6789999999999988877777777766665555888877764 36777777744 3345554 665443 22
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
=|+ ++...+.+.+.+.|||+|.+-....+..+
T Consensus 180 e~y---Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY---EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hHH---HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 232 66789999999999999998887765443
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0013 Score=53.70 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=43.1
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCC---C--C-CcEEEecc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSV---P--K-GDAIFLKW 256 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---p--~-~D~i~~~~ 256 (353)
.|+|+-||.|+.++++++.+. +++.+|. +..++.++. .++|+++.+|+++.. . . .|+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 699999999999999999975 5888887 555655543 268999999998722 2 1 28888764
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0033 Score=55.25 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=59.2
Q ss_pred EEeCCCCC--CC------CC-CcEEEeccccccCC--chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccc
Q 018576 237 HVAGDMFQ--SV------PK-GDAIFLKWILHDWD--DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSH 305 (353)
Q Consensus 237 ~~~~d~~~--~~------p~-~D~i~~~~~Lh~~~--~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~ 305 (353)
.+..|... |+ |. .|+|++.++|...+ .++-.+.++++.++|||||.|++........ +.
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 56677766 22 33 49999999998754 3446799999999999999999988753221 01
Q ss_pred cchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 306 IDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 306 ~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
..-.. + ..-..+.+.+++.|+++||.+++...
T Consensus 208 vG~~~---F-~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 VGGHK---F-PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ETTEE---E-E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ECCEe---c-ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 0 11134789999999999999887764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.025 Score=47.00 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=68.1
Q ss_pred HHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cEEEe
Q 018576 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DAIFL 254 (353)
Q Consensus 182 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~i~~ 254 (353)
+...|+.-.+.+|||+|.|+|-.++.-++.- ...++..|. |..++..+-+ -.+.+...|... .|.. |+|+.
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~La 148 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLA 148 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEe
Confidence 3334435567899999999999988777653 335555555 4444443322 246777777765 3334 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCC-CCCEEEEEeeecCC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVP-EDGKVIVVELMLPE 292 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~ 292 (353)
..++++- ....+++. .++.|+ .|..+++-++..+.
T Consensus 149 gDlfy~~--~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 149 GDLFYNH--TEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred eceecCc--hHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 9999874 44567777 555555 45566666655443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0013 Score=49.78 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=39.6
Q ss_pred EEEcCCchHHHHHHHHHCCCC---eEEEecc-h---HHHhhCCC---CCCeeEEeCCCCCC---CC-CC-cEEEeccccc
Q 018576 195 VDVGGNLGVTLQAITSKYPYI---KGINFDQ-P---HVIEHAPL---HPHIEHVAGDMFQS---VP-KG-DAIFLKWILH 259 (353)
Q Consensus 195 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~rv~~~~~d~~~~---~p-~~-D~i~~~~~Lh 259 (353)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.+|..+- ++ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998877544 6899998 4 23333332 26899999998652 33 23 8777654 23
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. .+....-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 3556788999999999999888754
|
|
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0024 Score=45.35 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=43.0
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
|+..+.. ++.+..+|+..+++ +...+.++|+.|...|+++.. ++.|.+|+.|..++
T Consensus 11 IL~~l~~----~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 11 ILKILSK----GGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHH-T----T-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE------TTEEEE-HHHHHHH
T ss_pred HHHHHHc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC------CCEEEECccHHHHH
Confidence 4455544 48999999999999 999999999999999999764 78999999988765
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.021 Score=48.75 Aligned_cols=100 Identities=15% Similarity=0.259 Sum_probs=73.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhC-------CCCCCeeEEeCCCCCCC----CC----C-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHA-------PLHPHIEHVAGDMFQSV----PK----G- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~~~----p~----~- 249 (353)
.-++.++||||.=||..+..++...|. -+++.+|. +...+.+ .-...|++++++..+.+ ++ .
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 345889999999999999999999975 68899997 3333333 33467999999887632 22 1
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
|.+|.- +|. ........++.+.+|+||.|++-....+.
T Consensus 151 DfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 666543 344 34559999999999999999876655544
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.004 Score=58.17 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=41.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ 244 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 244 (353)
.+|||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 8999998 7777766542 468888888754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.024 Score=57.82 Aligned_cols=111 Identities=16% Similarity=0.090 Sum_probs=71.6
Q ss_pred hHHHHHHhcccc-CCCCeEEEEcCCchHHHHHHHHHC----C--------------------------------------
Q 018576 177 IMSNILESYKGF-ANIKQLVDVGGNLGVTLQAITSKY----P-------------------------------------- 213 (353)
Q Consensus 177 ~~~~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~----p-------------------------------------- 213 (353)
.+..++.... + .+...++|-.||+|+++++.+... |
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 3444554333 6 556899999999999999876521 1
Q ss_pred CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCC--C--CcEEEeccccc-cCC-chHHHHHHHHHHHhCC
Q 018576 214 YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVP--K--GDAIFLKWILH-DWD-DEHCLKLLKNCYKSVP 278 (353)
Q Consensus 214 ~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p--~--~D~i~~~~~Lh-~~~-~~~~~~~L~~~~~~L~ 278 (353)
..+++++|. +.+++.|+.+ +++.+..+|+.+ +.+ . .|+|+++--.- .+. +.+...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 7778776653 568999999987 333 1 29998884431 122 2334444444444443
Q ss_pred ---CCCEEEEEee
Q 018576 279 ---EDGKVIVVEL 288 (353)
Q Consensus 279 ---pgG~l~i~e~ 288 (353)
||++++++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8988877664
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0031 Score=50.14 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=54.8
Q ss_pred EEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHHHHHH
Q 018576 194 LVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 194 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L 270 (353)
.+-||||.=. -.|++..|-+.- ++.+.+++-.... .+... |+|.+.+++.|+.-++-..++
T Consensus 6 kv~ig~G~~r-------~npgWi~~d~ed---------~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al 69 (185)
T COG4627 6 KVKIGAGGKR-------VNPGWIITDVED---------RPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL 69 (185)
T ss_pred EEEEeccccc-------cCCCceeeehhc---------ccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 4678888643 256665443321 1223333332222 44433 999999999999988999999
Q ss_pred HHHHHhCCCCCEEEEEee
Q 018576 271 KNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 271 ~~~~~~L~pgG~l~i~e~ 288 (353)
+.+++.|||||+|-|.-+
T Consensus 70 kechr~Lrp~G~LriAvP 87 (185)
T COG4627 70 KECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHhCcCcEEEEEcC
Confidence 999999999999998654
|
|
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0031 Score=45.06 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=48.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceecccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l 105 (353)
++++|...|... +..++.+|.+.+|+ +...+.+.|+.|...|+|+..-. ++.-...|.+|+.|+..
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~ 68 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREA 68 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHH
Confidence 477888888885 48999999999999 99999999999999999998721 11112247888777643
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.017 Score=56.84 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC--------CeEEEecc-hHHHhhCCCC----C--CeeEEeCCCCC-C------CC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY--------IKGINFDQ-PHVIEHAPLH----P--HIEHVAGDMFQ-S------VP 247 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--rv~~~~~d~~~-~------~p 247 (353)
...+|||.+||+|.++..++...+. .+++++|+ +..+..++.. . .+.....|+.. . ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887752 46789998 5555544321 2 34555555443 1 11
Q ss_pred CC-cEEEec
Q 018576 248 KG-DAIFLK 255 (353)
Q Consensus 248 ~~-D~i~~~ 255 (353)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 23 888887
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0055 Score=39.02 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhccccee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVE 84 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~ 84 (353)
.+..|+..|.+. ++.|..|||+.+|+ ....+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~---~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN---PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC---TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 456788889886 37999999999999 9999999999999999985
|
... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.077 Score=46.50 Aligned_cols=105 Identities=16% Similarity=0.222 Sum_probs=73.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchH-----HHhhCCCC---CCeeEEeCCCCC-CCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPH-----VIEHAPLH---PHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~---~rv~~~~~d~~~-~~p 247 (353)
...|+..+. ..++.+|++-|.|+|.++..+++.. |.-+..-+|..+ ..+..+++ +++++...|+.. .++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 445666666 7889999999999999999999987 888888888732 22333333 678999999887 444
Q ss_pred C----CcEEEeccccccCCchHHHHHHHHHHHhCCCC-CEEEEEeeec
Q 018576 248 K----GDAIFLKWILHDWDDEHCLKLLKNCYKSVPED-GKVIVVELML 290 (353)
Q Consensus 248 ~----~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pg-G~l~i~e~~~ 290 (353)
. +|.|++- ++.+. ..+-.++.+||.+ |+|+...++.
T Consensus 173 ~ks~~aDaVFLD-----lPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFLD-----LPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEEc-----CCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 2888874 33332 4455566688865 4777655554
|
|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0087 Score=46.20 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=41.1
Q ss_pred HHhChhhhhh-hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIID-KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..++.+|- .. +|.|+++||+.++. +..-+.|-|+-|...|++.++.
T Consensus 28 ~Dv~v~~~LL~~~---~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 28 LDVEVYKALLEEN---GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHHhhc---CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 3455666666 44 69999999999999 9999999999999999999984
|
|
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0067 Score=41.71 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=40.5
Q ss_pred hhhhhh-hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccc
Q 018576 37 IFQIID-KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVS 102 (353)
Q Consensus 37 lf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~ 102 (353)
++..|. .. ++.|..+|++.+++ +...+.+.++.|...|+|++.. .++. ...|.+|+.|
T Consensus 8 vL~~l~~~~---~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R-~~~~~LT~~G 68 (68)
T PF13463_consen 8 VLRALAHSD---GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKR-SKRYRLTPAG 68 (68)
T ss_dssp HHHHHT--T---S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTT-SEEEEE-HHH
T ss_pred HHHHHHccC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCC-eeEEEeCCCC
Confidence 444555 32 59999999999999 9999999999999999998773 1221 2458888754
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.003 Score=43.59 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=41.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..++..|-.. ++.|+++||+.+|+ +...+.+.|+.|...|++.+.
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456677777654 59999999999999 999999999999999999987
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.009 Score=40.16 Aligned_cols=46 Identities=24% Similarity=0.180 Sum_probs=37.2
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.|.+.|.... +|+|..|||+.+|+ +..-++++|..|+..|.+.+.+
T Consensus 4 ~Il~~i~~~~--~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQN--GPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHT--S-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcC--CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence 4566666621 59999999999999 9999999999999999999864
|
|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0077 Score=53.07 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=48.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-+.|++.|...+ .++|+.|||+.+|+ +..-+.|+|..|+..|++.+++ ++++|.++...
T Consensus 6 al~iL~~l~~~~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~----~~g~Y~Lg~~~ 64 (246)
T COG1414 6 ALAILDLLAEGP--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP----EDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEeehHHH
Confidence 356788888742 34679999999999 8999999999999999999872 25689988543
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0092 Score=37.72 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=35.5
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceec
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSL 98 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~ 98 (353)
|.|..+||+.+++ +...+.+.|+.|.+.|++... .+.|.+
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~------~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE------GGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe------CCEEEE
Confidence 7899999999999 899999999999999999975 456654
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.048 Score=46.19 Aligned_cols=105 Identities=19% Similarity=0.155 Sum_probs=59.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHH---HHHC-CCCeEEEecc--hHHHhhCCCC----CCeeEEeCCCCCC---C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAI---TSKY-PYIKGINFDQ--PHVIEHAPLH----PHIEHVAGDMFQS---V 246 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l---~~~~-p~~~~~~~D~--~~~~~~a~~~----~rv~~~~~d~~~~---~ 246 (353)
+++-.+. +..|+++|.-.|+-+.-+ ++.+ +..+++++|+ +..-..+.+. +||++++||..++ .
T Consensus 26 eli~~~k----Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 26 ELIWELK----PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp HHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHH
T ss_pred HHHHHhC----CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHH
Confidence 4554444 789999999888766644 4555 7889999998 2222223232 8999999998752 1
Q ss_pred C-----C-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 247 P-----K-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 247 p-----~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+ . . -++++-..=|.. +.+.+.|+.....++||++++|-|...
T Consensus 102 ~v~~~~~~~~~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp TSGSS----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred HHHHhhccCCceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 1 1 1 345555555543 346788999999999999999987654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0077 Score=53.21 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=47.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-+.|++.+...+ .|.|+.|||+.+|+ +..-+.|+|..|+..|++.++ ++.|++.+..
T Consensus 11 al~IL~~l~~~~--~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~------~~~Y~lG~~~ 67 (248)
T TIGR02431 11 GLAVIEAFGAER--PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD------GRLFWLTPRV 67 (248)
T ss_pred HHHHHHHHhcCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEecHHH
Confidence 356777887643 58999999999999 899999999999999999874 4679887543
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.02 Score=53.60 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC----CC---cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP----KG---DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p----~~---D~i~ 253 (353)
.+.+|||+=|=||.++...+..- ..++|.+|. ...++.++++ +++.++++|.++.+. .+ |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 38899999999999999888762 238999998 5567766653 568999999997332 22 9998
Q ss_pred eccc-cc-----cCC-chHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 254 LKWI-LH-----DWD-DEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 254 ~~~~-Lh-----~~~-~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+--- +- -|+ ...-.+++..+.+.|+|||.++++...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 7421 10 011 223468899999999999999987754
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.021 Score=38.97 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.++|..+||+.+|+ ....+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~-----~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR-----GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec-----CCCeEEeCC
Confidence 48999999999999 999999999999999999986 125677653
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0071 Score=50.69 Aligned_cols=97 Identities=20% Similarity=0.146 Sum_probs=63.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC------CCC-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV------PKG-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~------p~~-D~i~~ 254 (353)
.+.++||+=||||.++.+.+.+. ..+++.+|. +..+...+++ ++++.+..|.+..+ ... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 47899999999999999988874 347899998 5555544432 46889999976521 223 99998
Q ss_pred ccccccCCchHHHHHHHHHH--HhCCCCCEEEEEeeec
Q 018576 255 KWILHDWDDEHCLKLLKNCY--KSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~--~~L~pgG~l~i~e~~~ 290 (353)
---.... .....++..+. ..|+++|.++ +|...
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii-~E~~~ 155 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLII-IEHSK 155 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEE-EEEET
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEE-EEecC
Confidence 8665431 11366777776 6788777655 55543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.17 Score=45.20 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecchHHHhhCC----CC------------------------CCeeE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQPHVIEHAP----LH------------------------PHIEH 237 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~----~~------------------------~rv~~ 237 (353)
.....+|+.+|||.-.....|...+ +.++++-+|.|++++..- +. ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999987 788999999987765321 10 24455
Q ss_pred EeCCCCC--CCC-----C----C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccc
Q 018576 238 VAGDMFQ--SVP-----K----G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNS 304 (353)
Q Consensus 238 ~~~d~~~--~~p-----~----~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~ 304 (353)
+..|..+ .+. . . -++++--+|-++..++...+++.+..... .+.+++.|.+.+.++ +..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence 5555542 110 0 1 45666678888888888899999888765 678888998876642 212
Q ss_pred ccchhhhhhCC-C-------CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 305 HIDVLMMTQNP-G-------GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 305 ~~~~~~~~~~~-~-------g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.|..++. . -...|.+..++-+.++||+.+.+.++
T Consensus 237 ----vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 ----VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ----HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 2222110 0 12247888888899999998887654
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.031 Score=50.55 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=52.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 244 (353)
..++++.+. ..++..++|.-+|.|+.+..+++.+|+.+++++|. +.+++.+++. +|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456677666 56677999999999999999999998899999999 7777776542 477777777654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.013 Score=52.70 Aligned_cols=58 Identities=12% Similarity=0.204 Sum_probs=47.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
-+.|++.|.+.. +|.|+.|||+.+|+ +..-+.|+|..|+..|++.++. ..++|++.+.
T Consensus 30 al~IL~~l~~~~--~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~ 87 (274)
T PRK11569 30 GLKLLEWIAESN--GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG----ELGHWAIGAH 87 (274)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEecCHH
Confidence 355777777643 58999999999999 8999999999999999999752 2578988754
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.013 Score=52.12 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=46.9
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|... ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ +++.|.+.+..
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~----~~~~Y~lG~~~ 73 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG----ESEKYSLTLKL 73 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEecHHH
Confidence 4566777664 48999999999999 8999999999999999999862 25789888554
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.014 Score=52.26 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=47.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
-+.|++.|...+ .+.|+.|||+.+|+ +..-+.|+|..|+..|+|.++. ..+.|.+...
T Consensus 27 ~l~IL~~~~~~~--~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~----~~~~Y~lG~~ 84 (271)
T PRK10163 27 GIAILQYLEKSG--GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS----QLGWWHIGLG 84 (271)
T ss_pred HHHHHHHHHhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCeEEecHH
Confidence 355777777643 47999999999999 8999999999999999998862 2577988754
|
|
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.017 Score=49.29 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=51.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec---cCCCCccceecccccccccC
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~---~~g~~~~~y~~t~~~~~l~~ 107 (353)
+..|+..|... ++.|+.+||+.+++ ++..+++.|+.|+..|+|.+.. ..|.-...|.+|+.+.....
T Consensus 3 r~~IL~~L~~~---~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~ 72 (203)
T TIGR02702 3 KEDILSYLLKQ---GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP 72 (203)
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence 34577777765 48999999999999 9999999999999999998762 12222234788877775553
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.016 Score=51.76 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l 105 (353)
--+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ .++.|++++....+
T Consensus 12 ral~iL~~l~~~~--~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~----~~~~Y~Lg~~~~~l 74 (263)
T PRK09834 12 RGLMVLRALNRLD--GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA----SDDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec----CCCcEEEcHHHHHH
Confidence 3456777777643 36999999999999 8999999999999999999863 25679998655433
|
|
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.029 Score=43.29 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=52.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceecccccccccC
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYVP 107 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~~ 107 (353)
..+..++..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|++.+... .-.-.+.+|+.|..+..
T Consensus 28 ~~q~~iL~~l~~~---~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 28 EQQWRILRILAEQ---GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3455688888775 48999999999999 8889999999999999999873110 01225788877776653
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.046 Score=45.85 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC---------CCeeEEeCCCCC-CC----C------CC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH---------PHIEHVAGDMFQ-SV----P------KG 249 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~rv~~~~~d~~~-~~----p------~~ 249 (353)
+..+|+.+|||-=.....+....++++++-+|.|++++..++. .+++++..|+.+ .+ . ..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4459999999999999999988889999999999988765542 236789999986 21 1 12
Q ss_pred -cEEEeccccccCCchHHHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNC 273 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~ 273 (353)
-++++-.++.+++.+++.++|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 678888999999999888888876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.043 Score=51.36 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=68.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC---CC-cEEEecccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP---KG-DAIFLKWIL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p---~~-D~i~~~~~L 258 (353)
..+|||.-||+|..++.++.+.++ -+++..|. +..++.++++ .++.+..+|+...+. .. |+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998754 47899998 6666655442 357888888876222 23 9988854 3
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..+ ..++..+.+.+++||.|.+.-
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEEe
Confidence 211 367888889999999999973
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.017 Score=40.02 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=36.6
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.|... +..|++|||..+++ ++..++.+|+.|+..|.|.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 55677775 58999999999999 999999999999999999987
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.024 Score=49.29 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCCCCCCC--cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQSVPKG--DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~ 260 (353)
+.+.+|+|||||.-=++.-.....|+..+++.|+ ..+++.... ..+.+....|.....|.. |+.++--++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999888888888999999999 555554433 256778888998855543 99999999998
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+..+.. ..--++.+.++ .-.++|..++.
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 754443 33333444444 24666666553
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.038 Score=49.92 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=47.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMF 243 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~ 243 (353)
..++++.+. ..+...++|.--|.|+++..+++++|+.+++++|. |.+++.++++ +|+.++..+|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777776 66778999999999999999999999999999999 7888776543 57777777764
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.024 Score=48.33 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=49.5
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec-cC--CCCccceeccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL-DG--SGARRRYSLNSVSKY 104 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~-~~--g~~~~~y~~t~~~~~ 104 (353)
+-.|...|.++ +|+|+.|||+.+|+ ++..+++.|+.|++.|++.... +. |.-.-.|++|..+..
T Consensus 13 r~~il~lL~~~---g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 13 RERILELLKKS---GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHHHhcc---CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 33466677766 59999999999999 9999999999999999998763 12 222234888877665
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.024 Score=48.00 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CCCC-cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VPKG-DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p~~-D~i~~~~~ 257 (353)
....|+|.-||.|+.++.++.++| .++.+|. |.-+.-|+.. +||.|++||+++- +.-+ |.+.+.+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 467899999999999999999987 4666666 4445555542 7999999999872 2222 44444443
Q ss_pred cccCC-chHHHHHHHHHHHhCCCCC
Q 018576 258 LHDWD-DEHCLKLLKNCYKSVPEDG 281 (353)
Q Consensus 258 Lh~~~-~~~~~~~L~~~~~~L~pgG 281 (353)
--.|+ ......-+-.+...+.|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 33344 2334444555566666653
|
|
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.021 Score=39.06 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=43.8
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCC--cCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDA--PTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~--~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
|++.|.+++ +|++..+|++.++.. ..+ +..|+|.|++|...|++.+. | ...+.+|+.|.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~-g~~~se~avRrrLr~me~~Glt~~~---g--~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLR-GEELSEEAVRRRLRAMERDGLTRKV---G--RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhc-ChhhhHHHHHHHHHHHHHCCCcccc---C--CcccccCHHHH
Confidence 566777754 699999999999762 223 58899999999999977754 2 34456777654
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.029 Score=45.37 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++.|+++||+..++ ++..+++++..|...|+|+-. .|. ++.|+|+..
T Consensus 24 ~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~--rG~-~GGy~Lar~ 70 (150)
T COG1959 24 GPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSV--RGK-GGGYRLARP 70 (150)
T ss_pred CcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEee--cCC-CCCccCCCC
Confidence 48999999999999 999999999999999999986 343 677887743
|
|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.026 Score=41.84 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=48.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+|++.+++ ++..+.+.|+.|+..|+|++... .+.....|.+|+.+..+.
T Consensus 11 ~~~~il~~l~~~---~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 11 TQFLVLRILYEE---GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 356677778765 37999999999999 89999999999999999997621 011122466665554433
|
|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.018 Score=38.73 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=39.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..++..|...++ .+.|+.+||+.+++ ++..+.+.++.|+..|+|++.
T Consensus 6 ~q~~vL~~l~~~~~-~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 6 SQFRVLMALARHPG-EELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHHSTT-SGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34556677777531 12899999999999 999999999999999999987
|
... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.035 Score=41.49 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ 222 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 222 (353)
.+....+|||||.|.+.--|.+. +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 45678999999999988877775 667899996
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.081 Score=50.45 Aligned_cols=98 Identities=15% Similarity=0.247 Sum_probs=64.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeE---EEecchHHHhhCCCCCCeeEEeCCCCC---CCCCC-cEEEecccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKG---INFDQPHVIEHAPLHPHIEHVAGDMFQ---SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~rv~~~~~d~~~---~~p~~-D~i~~~~~Lh~ 260 (353)
...-++|+|..+|.|+|+.+|... | +-+ +-.+-+..+...-.+ .+-=+-+|..+ -+|.. |++...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhh
Confidence 345689999999999999999763 3 222 222222222222221 11122234444 35666 99999988887
Q ss_pred CCch-HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDDE-HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~~-~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+.+. +...+|-++-|.|||||.++|-|.
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 6533 356999999999999999999764
|
; GO: 0008168 methyltransferase activity |
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.041 Score=45.20 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+|.|+++||+.+++ ++..++++|+.|...|+|... .|. ++.|.+.
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~--rG~-~GGy~La 68 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV--RGP-GGGYLLG 68 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC--CCC-CCCeecc
Confidence 48999999999999 999999999999999999974 332 5668766
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.038 Score=44.28 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|+++||+.+++ .+..+.+.|+.|...|+|.+. ....|.+|+.|..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~-----~~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYE-----KYRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEe-----cCceEEECHHHHHHH
Confidence 58899999999999 999999999999999999975 146689998886543
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.049 Score=43.20 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|.++||+.+++ ++..++++|+.|...|++... .|. ++.|.++.
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~--~G~-~Ggy~l~~ 69 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV--RGP-GGGYQLGR 69 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE--eCC-CCCEeccC
Confidence 48999999999999 999999999999999999864 232 45687663
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.13 Score=41.30 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..|+..|... ++.|..+||+.+++ ++..+.+.++-|+..|+|.+.+
T Consensus 41 ~q~~vL~~l~~~---~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~ 88 (144)
T PRK11512 41 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP 88 (144)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc
Confidence 344557777654 48999999999999 9999999999999999999973
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.076 Score=47.07 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=68.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecch-HHHhhCCC----------CCCeeEEeCCCCC---CCCCC--c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQP-HVIEHAPL----------HPHIEHVAGDMFQ---SVPKG--D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~~-~~~~~a~~----------~~rv~~~~~d~~~---~~p~~--D 250 (353)
.+++.++|-||+|.|.+++..++. +.+ ++..+|.. .+++..++ .++|.+.-||-+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 467899999999999999998886 655 45667763 34444333 2789999998765 34344 8
Q ss_pred EEEeccccccCCc--hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDD--EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~--~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|+.-..=-..+. ---..++.-+.++|||||+++++..+.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 7765422111110 012356677889999999999987543
|
|
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.034 Score=40.72 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=46.8
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
|+..|.. ||....||.+.+ ++ .+..+.+-|+.|.+.|++++.... ....-.|.+|+.|..+.
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4455665 499999999999 89 999999999999999999987321 11124599998888766
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.22 Score=43.52 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC------------CCeeEEeCCCCC------CCCC-Cc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH------------PHIEHVAGDMFQ------SVPK-GD 250 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~rv~~~~~d~~~------~~p~-~D 250 (353)
...+||++|+|+|..++..+. ....+++.-|.+..+...... ..+.....+-.. -.|. .|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467999999999955554444 457889999986655433211 134333332222 1233 59
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|+.+.+++. +.....++..++..|..++.+++.-...
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999976 3445678888888999888665555443
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.028 Score=37.36 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=39.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
++.++..|... ++.|..+||+.+++ ++..+.++++-|+..|++++..
T Consensus 5 q~~iL~~l~~~---~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 5 QFRILRILYEN---GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence 44556667776 48999999999999 9999999999999999999873
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.048 Score=47.77 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
.++...-|..|+-.|.+ ||+|.+||-..+++ .+..+..-|+-|...|++.++ ++.|++|..|..++
T Consensus 8 ~if~SekRk~lLllL~e----gPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~------~~~Y~LS~~G~iiv 73 (260)
T COG4742 8 LLFLSEKRKDLLLLLKE----GPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE------GDRYSLSSLGKIIV 73 (260)
T ss_pred HHHccHHHHHHHHHHHh----CCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec------CCEEEecchHHHHH
Confidence 35566788899999999 59999999999999 889999999999999999986 78999998888766
Q ss_pred CC
Q 018576 107 PN 108 (353)
Q Consensus 107 ~~ 108 (353)
.+
T Consensus 74 ~k 75 (260)
T COG4742 74 EK 75 (260)
T ss_pred HH
Confidence 43
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.05 Score=42.87 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+|.|.++||+.+++ ++..++++|+.|...|++... .| .++.|.++.
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~--~g-~~ggy~l~~ 69 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESV--RG-PGGGYRLAR 69 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec--cC-CCCCccCCC
Confidence 48999999999999 999999999999999999864 22 145677653
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.082 Score=45.07 Aligned_cols=102 Identities=22% Similarity=0.233 Sum_probs=70.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC------C---eEEEecchHHHhhCCCCCCeeEEeCCCCCCC----
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY------I---KGINFDQPHVIEHAPLHPHIEHVAGDMFQSV---- 246 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~---~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~---- 246 (353)
++-+.|.-+.+..|++|+....|.++..+.++.-. - +++.+|+..|.. .+.|..+++|+..+-
T Consensus 31 qideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~ 106 (294)
T KOG1099|consen 31 QIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEA 106 (294)
T ss_pred hhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHH
Confidence 34444543466789999999999999988886521 1 278899854432 367888889987621
Q ss_pred -----C--CCcEEEecc-----ccccCCch----HHHHHHHHHHHhCCCCCEEEE
Q 018576 247 -----P--KGDAIFLKW-----ILHDWDDE----HCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 247 -----p--~~D~i~~~~-----~Lh~~~~~----~~~~~L~~~~~~L~pgG~l~i 285 (353)
. .+|+|++-. -||++++- -....|.-...+|+|||.++-
T Consensus 107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 1 139998864 47877522 133566777789999999874
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.068 Score=35.36 Aligned_cols=44 Identities=16% Similarity=0.340 Sum_probs=39.6
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|++.|... +.+|+++||+.+++ .+.-++|=|..|+..|++.+.
T Consensus 4 ~Il~~l~~~---~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~ 47 (57)
T PF08220_consen 4 QILELLKEK---GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT 47 (57)
T ss_pred HHHHHHHHc---CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 366777776 58999999999999 999999999999999999987
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.061 Score=39.06 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=53.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHH----------HHhcccce-eeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILR----------LLASYSVV-ECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~----------~L~~~g~l-~~~~~~g~~~~~y~~t 99 (353)
.=++..|+..|.+..| .+.++.|||+.+++ ++..+..-|+ .|+.+|+| .+...+| ...|++|
T Consensus 8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g--~k~Y~lT 80 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGG--FKYYRLT 80 (90)
T ss_pred HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCC--eeEEEeC
Confidence 5577888999988644 58999999999999 8888887775 58999999 4443333 4689999
Q ss_pred ccccccc
Q 018576 100 SVSKYYV 106 (353)
Q Consensus 100 ~~~~~l~ 106 (353)
+.+..+.
T Consensus 81 ~~G~~~~ 87 (90)
T PF07381_consen 81 EKGKRIA 87 (90)
T ss_pred hhhhhHH
Confidence 8877543
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.072 Score=41.02 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=46.2
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+.+--.+-|+..|... +|.|+.|+|+.+|- +...+.|-|+.|+..|++..+
T Consensus 59 a~vLsp~nleLl~~Ia~~---~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 59 ARVLSPRNLELLELIAQE---EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HHHhChhHHHHHHHHHhc---CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 344445667788889886 59999999999999 999999999999999999987
|
|
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.059 Score=34.96 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=35.1
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHH
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L 77 (353)
-.+|.+|++.|-|+.=.+ .|+++||+.+|+ .+..+...||--
T Consensus 6 ~e~L~~A~~~GYfd~PR~------~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 6 REILKAAYELGYFDVPRR------ITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHcCCCCCCCc------CCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 468999999999998755 699999999999 777777777643
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.085 Score=43.99 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=56.7
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSV 101 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~ 101 (353)
..+|.-..++.|++.|...+ ++.|+.+|++.+ ++ ...-+.|.|+.|+..|+|..... .|.....|+++..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~ 78 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNK--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEE 78 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccc
Confidence 45677778999999998753 259999999999 67 77889999999999999998742 1222456888876
Q ss_pred cccc
Q 018576 102 SKYY 105 (353)
Q Consensus 102 ~~~l 105 (353)
+..+
T Consensus 79 ~~~~ 82 (178)
T PRK06474 79 DAKI 82 (178)
T ss_pred eeee
Confidence 5544
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.14 Score=47.02 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC---CCcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP---KGDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p---~~D~i~~~~~ 257 (353)
..+.+|||.=+|.|.+++.+++.-.. +++.+|+ |..++..+++ .++..+.||...-.+ .+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34789999999999999999987533 3999999 7777655442 558999999987333 3599999866
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
-. ..+++..+.+.+++||.+...+.+..+
T Consensus 266 ~~------a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 KS------AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred Cc------chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 42 246777888888899999998887544
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.22 Score=39.46 Aligned_cols=106 Identities=16% Similarity=0.266 Sum_probs=69.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
+++++-++ -.+..+.+|+|+|.|....+.++.. -.+.+++++ |..+..++-+ .+.+|...|+++ ++..-
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34455454 3445899999999999988877764 457789998 5555555432 568899999887 55432
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.++++. .++-...+-.+++.-|+.+.+++-.-+-.|.
T Consensus 140 ~~vviFg------aes~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG------AESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee------hHHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 333322 1122334556677788888888877665443
|
|
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.082 Score=42.86 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=44.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.+..+||+.+++ .+.-+...++-|...|++.+.+ .+.+.+|+.|....
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~~-----y~gi~LT~~G~~~a 72 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYEP-----YGGVTLTEKGREKA 72 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEec-----CCCeEEChhhHHHH
Confidence 58999999999999 9999999999999999999973 56799998887554
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.22 Score=41.54 Aligned_cols=97 Identities=9% Similarity=-0.030 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCC---CC-C--CcEEEec
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQS---VP-K--GDAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p-~--~D~i~~~ 255 (353)
.+.++||+=+|+|.++.+.+.+. ..+++.+|. ...+...++ ..+++++..|.... .+ . -|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 47899999999999999999885 347888887 334433332 36788888888741 11 2 2999998
Q ss_pred cccccCCchHHHHHHHH--HHHhCCCCCEEEEEee
Q 018576 256 WILHDWDDEHCLKLLKN--CYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~--~~~~L~pgG~l~i~e~ 288 (353)
--.+. .--+....+.. -...|+|+|.+++-..
T Consensus 122 PPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAK-GLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 77762 11111222222 4567999888876443
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.13 Score=42.82 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=41.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
...|+++|... |++|.++||..+|+ +...++++|..|...|++.+.
T Consensus 24 ~~~Vl~~L~~~---g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 24 GFEVLKALIKK---GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred HhHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 34488888886 59999999999999 999999999999999999965
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.075 Score=50.70 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=63.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC--CCC---
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ--SVP--- 247 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p--- 247 (353)
...+.+. ..+..+++|+=||.|.++..++++ -.++++++. +++++.|++. ++++|..++.++ +..
T Consensus 284 ~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 284 TALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 3444444 456789999999999999999965 458899998 7777766542 569999999876 221
Q ss_pred CC-cEEEeccccccCCchHHH-HHHHHHHHhCCCCCEEEE
Q 018576 248 KG-DAIFLKWILHDWDDEHCL-KLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~~~~~~~-~~L~~~~~~L~pgG~l~i 285 (353)
.. |.|+.- -|..-+. .+++.+. .++|...++|
T Consensus 361 ~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 361 YKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred CCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEE
Confidence 12 777664 2222222 4444443 4455555554
|
|
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.28 Score=39.76 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCC
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSG 91 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~ 91 (353)
.+..+...-.....-..+. -|+..+... ++.|..+||+.+++ ++..+.++++.|...|++.+.+
T Consensus 22 ~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~---- 85 (152)
T PRK11050 22 GFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRP---- 85 (152)
T ss_pred HHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec----
Confidence 4555544443333333332 355566654 48999999999999 9999999999999999998752
Q ss_pred Cccceecccccccc
Q 018576 92 ARRRYSLNSVSKYY 105 (353)
Q Consensus 92 ~~~~y~~t~~~~~l 105 (353)
...+.+|+.|..+
T Consensus 86 -~~~v~LT~~G~~l 98 (152)
T PRK11050 86 -YRGVFLTPEGEKL 98 (152)
T ss_pred -CCceEECchHHHH
Confidence 3457777666544
|
|
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.11 Score=44.29 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.-++|...++..|++.|... +|+.+.|||+++|+ .+.-+..-+..|+..|+++.+.
T Consensus 16 v~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK---GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeeee
Confidence 44678889999999999987 59999999999999 8889999999999999999764
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.2 Score=42.55 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=73.2
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecchH-HHh-----hCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-VIE-----HAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWD 262 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~-----~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~ 262 (353)
.+++-+|||.-.+...+-+.. --.++-+|.+. +++ .++.++...+...|+.. .++.. |+++...+|+++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 499999999998887776642 12455566522 222 22445778999999988 77754 9999999999864
Q ss_pred chH--------HHHHHHHHHHhCCCCCEEEEEeee--cCCCC
Q 018576 263 DEH--------CLKLLKNCYKSVPEDGKVIVVELM--LPEVP 294 (353)
Q Consensus 263 ~~~--------~~~~L~~~~~~L~pgG~l~i~e~~--~~~~~ 294 (353)
.++ +...+.++.++|+|||+.+.+... .|..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCC
Confidence 222 335689999999999999998884 45443
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.18 Score=46.61 Aligned_cols=108 Identities=16% Similarity=0.299 Sum_probs=74.8
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc---hHHHhhC-------------CCCCCeeEEeCCCCC
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ---PHVIEHA-------------PLHPHIEHVAGDMFQ 244 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a-------------~~~~rv~~~~~d~~~ 244 (353)
+++.+. ........|+|+|.|.....++.....-.-+|+.+ |.-++.. ++...++++.++|..
T Consensus 184 i~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 344444 56778999999999999887776554445566664 3222211 112458899999987
Q ss_pred C------CCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 245 S------VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 245 ~------~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+ ++++++|+.+++..+ ++...=+.++..-+++|.+++-.++..+.
T Consensus 263 ~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 263 PKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred HHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecccccccc
Confidence 3 234599999999743 44444455999999999999999988763
|
|
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.41 Score=38.26 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=45.1
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
++..|...+ ++.|..+||+.+++ ++..+.+.++-|+..|+|++.+.+. .-.-...+|+.|..+.
T Consensus 36 vL~~l~~~~--~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcC--CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence 566666532 26899999999999 9999999999999999999973111 0012245555555443
|
|
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.11 Score=33.21 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=37.3
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+++.|... ++.|+.+|++.+++ .+.-+.+.|+.|...|++.+.
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~ 47 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV 47 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 45555554 47999999999999 999999999999999999976
|
|
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.14 Score=34.12 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.|..+|++.+++ +..-+.+.|+.|...|++...
T Consensus 9 ~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 9 GELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 48999999999999 889999999999999999976
|
|
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.12 Score=44.19 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=48.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.|+.|...|++.+.. + ....|.+|+.|
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~--~-r~~~~~lT~~G 203 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG--R-KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc--C-CccEEEeCCCC
Confidence 455677788775 37899999999999 8999999999999999999872 1 24668888654
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.2 Score=41.53 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=68.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhC----CCC--CCeeEEeCCCCC---CCCC---CcEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHA----PLH--PHIEHVAGDMFQ---SVPK---GDAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a----~~~--~rv~~~~~d~~~---~~p~---~D~i 252 (353)
..++.+|||..++.|+=+.++++..++ ..++.+|. +.-+... ++. .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567799999999999999999998875 56689997 3333322 221 335666666542 1121 2544
Q ss_pred Ee-------------ccccccCCchH-------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 253 FL-------------KWILHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 253 ~~-------------~~~Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
++ ..+...++..+ -.++|..+.+.|||||.|+-......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 33 12333444332 23789999999999999999887654
|
|
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.15 Score=35.18 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=38.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.++..|.+ ++.|.++||+.+++ ....+++.++.|.+.|+....
T Consensus 2 ~~~il~~L~~----~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~ 46 (69)
T TIGR00122 2 PLRLLALLAD----NPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT 46 (69)
T ss_pred hHHHHHHHHc----CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3557778887 48899999999999 999999999999999996654
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.059 Score=50.19 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=42.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDM 242 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~ 242 (353)
+..+++.++ ..+. .|||+=||.|.++..+++.. -++++++. +++++.|++. .+++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 444555555 4433 89999999999999999875 47999998 7777777642 6788887765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.095 Score=50.02 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=44.3
Q ss_pred ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC
Q 018576 187 GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ 244 (353)
Q Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~ 244 (353)
+++....+||+-||||.++..+++.. .+++|+++ |+.++-|+.. .+.+|++|-.++
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 36777999999999999999999874 57888887 7777766653 578999984443
|
|
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.14 Score=35.38 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=43.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+..|+..+... +.+..+|++.+++ +..-+.+.|+.|.+.|++.... ++ ....|.+++
T Consensus 9 ~~~il~~l~~~----~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~-~~-~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG----PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRR-EG-RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC----CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEE-ec-cEEEEEeCC
Confidence 44566666663 5899999999999 8999999999999999999762 22 235566664
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.15 Score=40.34 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=42.9
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.|++.|.. |+.|..|||+++|+ +...++-.|..|+..|.+.+.. -|. -..|.+.+
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~-~G~-~tyw~l~~ 69 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVE-IGR-AAIWCLDE 69 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEe-ecc-eEEEEECh
Confidence 45666633 58999999999999 8999999999999999999983 332 35555543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.83 E-value=1 Score=41.90 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=67.0
Q ss_pred ccCCCCeEEEEcCCchHHHHHHHHHCCCC---------------------------------------eEEEecc-hHHH
Q 018576 187 GFANIKQLVDVGGNLGVTLQAITSKYPYI---------------------------------------KGINFDQ-PHVI 226 (353)
Q Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~ 226 (353)
+|.....++|==||+|+++++.+...+++ .+++.|. +.++
T Consensus 188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i 267 (381)
T COG0116 188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI 267 (381)
T ss_pred CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence 36667899999999999999988776531 2679998 7788
Q ss_pred hhCCCC-------CCeeEEeCCCCC-CCC-CC-cEEEeccc--cccCCchH-HH----HHHHHHHHhCCCCCEEEEEe
Q 018576 227 EHAPLH-------PHIEHVAGDMFQ-SVP-KG-DAIFLKWI--LHDWDDEH-CL----KLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 227 ~~a~~~-------~rv~~~~~d~~~-~~p-~~-D~i~~~~~--Lh~~~~~~-~~----~~L~~~~~~L~pgG~l~i~e 287 (353)
+.|+.+ +.|.|.++|+.. .-| +. |+|+++-- .. +.+.. +. .+.+.+++.++.-++.+++.
T Consensus 268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 268 EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 777653 669999999986 333 34 99988733 21 22222 22 34445555555556666654
|
|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.15 Score=41.41 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|+.+||+..++ ++..++++|..|...|++.-. -|. ++.|.++.
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~--rG~-~GGy~La~ 68 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETV--RGR-NGGVRLGR 68 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee--cCC-CCCeeecC
Confidence 47899999999999 999999999999999999976 343 67787763
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.12 Score=34.51 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.+..+||+.+++ .+.-+...++-|...|+++++
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 59999999999999 999999999999999999987
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.12 Score=39.21 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=41.2
Q ss_pred HHHhChhhhhh--hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 32 VYELGIFQIID--KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 32 a~~lglf~~L~--~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..+..++..|. ... +++.|..+||+.+++ ++..+.+.++.|+..|++.+.+
T Consensus 25 ~~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~ 77 (109)
T TIGR01889 25 LEELLILYYLGKLENN-EGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKER 77 (109)
T ss_pred HHHHHHHHHHHhhhcc-CCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccC
Confidence 34555666666 211 148999999999999 9999999999999999999873
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.16 Score=40.60 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.+.|.++||+..|+ ++..+++.|+.|...|+++.. .|. ++.|.++
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~--~G~-~GG~~l~ 68 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAV--RGK-NGGIRLG 68 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEe--cCC-CCCeeec
Confidence 47899999999999 999999999999999999986 332 4667665
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.21 Score=32.84 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=31.8
Q ss_pred CC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+ |..+||+.+++ +...+++.|+.|...|++...
T Consensus 19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~ 53 (60)
T smart00345 19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR 53 (60)
T ss_pred cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 55 89999999999 999999999999999999876
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.097 Score=47.00 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=67.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC----CC--cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP----KG--DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p----~~--D~i~~ 254 (353)
.+.+|||+=|=||.++...+.. ...+++.+|. ...++.++++ ++++++..|+++.+. .+ |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987653 3458999998 5566655542 579999999987322 12 99976
Q ss_pred ccc-c--ccCC-chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 255 KWI-L--HDWD-DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 255 ~~~-L--h~~~-~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
--- + ..+. .....++++.+.+.|+|||.|++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 311 0 0111 23456899999999999999886554
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.14 Score=40.24 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=37.5
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
++.|+.|||+.+++ ++..+.+.|+.|...|++... .| ..+.|.+.
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~--~g-~~ggy~l~ 68 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSK--RG-VEGGYTLA 68 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEec--CC-CCCChhhc
Confidence 58999999999999 999999999999999999864 22 14557664
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.15 Score=38.55 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=41.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.++.|...|++..
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 456788888886 48999999999999 99999999999999999984
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.09 Score=30.12 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.1
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
|+|-+|||+.+|+ ..+-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5799999999999 999999999999998875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.25 Score=37.84 Aligned_cols=63 Identities=27% Similarity=0.383 Sum_probs=44.9
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCC-CCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKN-KDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~-~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-|++.|...+ ++.|++||.+.+.-.. +.+..-+-|.|+.|+..|++.+...++ ....|.++
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~-~~~~y~~~ 66 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGD-GKARYELN 66 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCC-CceEEEeC
Confidence 455788887643 5899999999984211 127888999999999999999873222 13566554
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.56 Score=44.06 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=61.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchH----HHHHHHHHC---CCCeEEEecchH-----HHhhCCCC-------CC--eeE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGV----TLQAITSKY---PYIKGINFDQPH-----VIEHAPLH-------PH--IEH 237 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~~~-------~r--v~~ 237 (353)
..|++.+. -.+...|+|+|.|.|. +...|+.+. |.+++|+++.|. .++.+.++ -+ ++|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 45667666 4567899999999985 444566553 678999999832 22222221 12 334
Q ss_pred EeC--CCCCCC-------CCC--cEEEeccccccCCch------HHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 238 VAG--DMFQSV-------PKG--DAIFLKWILHDWDDE------HCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 238 ~~~--d~~~~~-------p~~--D~i~~~~~Lh~~~~~------~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
... +-.+.+ ..+ =+|-+.+.||++.++ ....+|+.++ .|+|. .++++|.-
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~-vvv~~E~e 245 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK-VVVLVEQE 245 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC-EEEEEeec
Confidence 331 211111 113 344566777888632 2345777665 67886 44455543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=91.87 E-value=4.3 Score=35.34 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCCCCCC---C--cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQSVPK---G--DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~---~--D~i~~~~~L 258 (353)
.+.+||-||-..- .+++++...+..+++++|+ ..+++..++ .-.|+.+..|+..++|+ + |+++.--.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 4689999996654 3444445555679999998 444443322 12499999999998885 2 99888744
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEE
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l 283 (353)
++.+-..-++.+..++||..|..
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-E
T ss_pred --CCHHHHHHHHHHHHHHhCCCCce
Confidence 34466789999999999965533
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.99 Score=43.45 Aligned_cols=125 Identities=18% Similarity=0.276 Sum_probs=79.8
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccC--CCCeEEEEcCCchHHHHHHHHHC----CCCeEEEecc-hHH
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFA--NIKQLVDVGGNLGVTLQAITSKY----PYIKGINFDQ-PHV 225 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~ 225 (353)
++-+++++-....|.++. .+.+.+..+.-+ ....|.-+|+|.|-+..+.++.- -.++...++- |..
T Consensus 335 YetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA 407 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA 407 (649)
T ss_pred hhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch
Confidence 555666766556666544 446666655222 35688999999998777655532 2455666664 444
Q ss_pred HhhCCC------CCCeeEEeCCCCC-CCC-C-CcEEEeccccccCCchH-HHHHHHHHHHhCCCCCEEEE
Q 018576 226 IEHAPL------HPHIEHVAGDMFQ-SVP-K-GDAIFLKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 226 ~~~a~~------~~rv~~~~~d~~~-~~p-~-~D~i~~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i 285 (353)
+-..+. ..+|+++..|+.+ .-| + +|++++- .|--+.|.+ ....|.-+...|||+|.-+=
T Consensus 408 ivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 408 IVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 332222 1689999999988 444 3 3877654 333444444 45789999999999976653
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.45 Score=42.57 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=53.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~ 244 (353)
..+.++.+. ..+....+|.-=|.|+++..+++++|.. +.+++|. |.+++.|++. +|+.++..+|.+
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 445666666 6667999999999999999999999865 5999999 8888888763 588888877653
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.091 Score=38.42 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccC
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~ 107 (353)
++....-|.-.+++ +....+.+++.|+..|++... ++| ....|.+|+.|..++.
T Consensus 30 ~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~-~~~-~~~~y~lT~KG~~fle 83 (95)
T COG3432 30 GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ-DNG-RRKVYELTEKGKRFLE 83 (95)
T ss_pred CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec-cCC-ccceEEEChhHHHHHH
Confidence 57888899999999 999999999999999966665 233 2447999999887753
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.21 Score=33.97 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-|-|+.|||+.+|++ ++..+.+.|+.|+..|++++.
T Consensus 24 ~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 24 YPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp S---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 366999999999993 488999999999999999986
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.21 Score=40.71 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|+++|..+ +.+|-++||..+|+ +..-++++|..|...|++.+.
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 4578888765 58999999999999 999999999999999999754
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.31 Score=34.19 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=39.2
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
|=|.|... |..++.+||..+++ +++.++.+|..|+..|-+++.+
T Consensus 7 lRd~l~~~---gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHHc---CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence 44677776 58999999999999 9999999999999999999873
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.23 Score=42.61 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
...|..+||+.+++ ++..+.|.|+.|...|++++.. +. ....+.+|+.|..++
T Consensus 20 ~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~-~~-r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTI-VP-RGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEE-cC-CceEEEECHHHHHHH
Confidence 36899999999999 9999999999999999999873 22 246677887776555
|
|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.33 Score=31.61 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=33.1
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhccc
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYS 81 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g 81 (353)
.|+..|...+ +++|.++||+.+++ +.+-+++-++.|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGV----SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence 4566774432 47999999999999 9999999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.57 Score=31.42 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|..+||+.+++ +...+++.|..|+..|+++..
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~ 58 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVERR 58 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 459999999999 899999999999999999875
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.72 Score=38.62 Aligned_cols=46 Identities=17% Similarity=-0.033 Sum_probs=40.0
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..++..|... ++.|..+||+.+++ +..-+.++++-|+..|+|.+.+
T Consensus 48 ~~iL~~L~~~---~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~ 93 (185)
T PRK13777 48 HHILWIAYHL---KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK 93 (185)
T ss_pred HHHHHHHHhC---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC
Confidence 4667777765 48999999999999 8888999999999999999873
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.41 E-value=5.3 Score=32.85 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=74.9
Q ss_pred EEcCCchHHHHHHHHHCC-C--CeEEEecchH-HHhhCCC---------CCCeeE-EeCCCCC--CCC---CC--cEEEe
Q 018576 196 DVGGNLGVTLQAITSKYP-Y--IKGINFDQPH-VIEHAPL---------HPHIEH-VAGDMFQ--SVP---KG--DAIFL 254 (353)
Q Consensus 196 DvG~G~G~~~~~l~~~~p-~--~~~~~~D~~~-~~~~a~~---------~~rv~~-~~~d~~~--~~p---~~--D~i~~ 254 (353)
=||=|.=.++..|++.++ . +-+|.+|..+ +.+.-.. ..++.. ...|..+ ... .. |.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788889999999987 4 3457777633 3332221 133433 3346654 122 22 99998
Q ss_pred ccccccCC-----------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 255 KWILHDWD-----------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 255 ~~~Lh~~~-----------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
++-.-... ..-+..+|+.+...|+++|.+.|.-....+ ++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------y~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------YDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------Cccc
Confidence 87654311 122458899999999999999985543221 1111
Q ss_pred HHHHHHHhcCCceeeEeeeC
Q 018576 324 EFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~~ 343 (353)
++.++.+++||..++..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 35577888999988887754
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.38 Score=35.51 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=37.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.++|..|||+.+|+ ++.-+.|.|+.|+..|+|.+. .| .+.|..+
T Consensus 46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~--~~--~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQ--GM--MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeee--cC--CceeecC
Confidence 38999999999999 999999999999999999975 22 3667665
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.37 Score=46.41 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=50.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCC--CCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLP--TKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~--~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|+..|.+ ++.+..||++.++ + .+..+.+.|+.|...|+|+...+.|. ...|++|+.+..++
T Consensus 373 r~~IL~~L~~----~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~-~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 373 KLEILKILSE----REMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGR-RVYYKLTEKGRRLL 438 (442)
T ss_pred HHHHHHHHhh----CCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCC-cEEEEECcHHHHHH
Confidence 5567777876 4899999999998 7 88899999999999999986322342 45689998776543
|
|
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.33 Score=35.69 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 52 ASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 52 ~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.+||+.+++ ++..+.+.++.|...|++.+.+ +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~-----~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP-----YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC-----CCceEechhHHHHH
Confidence 4689999999 9999999999999999999872 34688887766543
|
iron dependent repressor |
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.1 Score=34.64 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
-.+....+.+.+-|...+|+...+ |+.-..||.+.++ + .+..|.+-|+.|+..|++.+..-.
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~-------------g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~ 73 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD-------------GPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYP 73 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc-------------CCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecC
Confidence 346777888888888888776543 2889999999998 9 999999999999999999987310
Q ss_pred -CCCccceeccccccccc
Q 018576 90 -SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 -g~~~~~y~~t~~~~~l~ 106 (353)
-.-.-.|++|+.|..+.
T Consensus 74 ~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 74 EEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred CCCceeEEEEhhhHHHHH
Confidence 01134588887776655
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.4 Score=38.96 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=65.0
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCC---CCCCCCC-CcEEEeccccccC
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGD---MFQSVPK-GDAIFLKWILHDW 261 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~i~~~~~Lh~~ 261 (353)
..++.+|+=+|.| .|..+.++++..- .+++++|. ++-.+.|++...-.++... ..+...+ .|+|+-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4567788888876 6688999999876 99999999 5567777776444555533 2222333 377766544 2
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+....+.|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 33666778999999999988763
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.26 Score=48.11 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=56.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDG 111 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~~ 111 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|.+.|++++..+ ....|.+|+.|..++....+
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~---~~~~i~LTeeG~~~~~~g~p 75 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER---VEEVYVLTEEGKKYAEEGLP 75 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee---eEEEEEECHHHHHHHHhcCH
Confidence 456677788765 48999999999999 99999999999999999998721 24679999999987766543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.3 Score=39.01 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=62.5
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEe---CC-CCCC---C-CC-C-cEEEec
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVA---GD-MFQS---V-PK-G-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d-~~~~---~-p~-~-D~i~~~ 255 (353)
.....+||.+|||. |..+..+++.....++++++. ++..+.+++.....++. .+ +.+. . +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45668999999998 889999999986546888876 66666665542223222 11 1111 1 11 3 766553
Q ss_pred c---------------ccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 W---------------ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~---------------~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
- +|+...+. ...++++.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 1 12222222 4578889999999999998854
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.57 Score=43.93 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCeeEEeCCCCC---CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 233 PHIEHVAGDMFQ---SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 233 ~rv~~~~~d~~~---~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
++|+++.+++.+ ..|.+ |.+++...+..++++...+.++++.++++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999998876 34444 9999999999999999999999999999999999997765443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.11 E-value=0.46 Score=41.98 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=44.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS 90 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g 90 (353)
-+..+.+.|.+.| |..+-+||.+++|+ +..-+.|.|+-|+..|++++. |.|
T Consensus 196 ~e~~il~~i~~~G--Gri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~-K~G 246 (258)
T COG2512 196 DEKEILDLIRERG--GRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKE-KKG 246 (258)
T ss_pred HHHHHHHHHHHhC--CEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEE-EeC
Confidence 3456778888865 78999999999999 899999999999999999998 444
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=88.88 E-value=0.33 Score=46.65 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=59.2
Q ss_pred HHHhChhhhhhhcCCCCC-CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCC
Q 018576 32 VYELGIFQIIDKAGPGAK-LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKD 110 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~ 110 (353)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++...+ ....|.+|+.|..++....
T Consensus 3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~l~~G~ 72 (492)
T PLN02853 3 MAEEALLGALSNN---EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI---KRETWVLTEEGKKYAAEGS 72 (492)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCC
Confidence 4577788888874 34 799999999999 99999999999999999998742 3688999999998887766
Q ss_pred C
Q 018576 111 G 111 (353)
Q Consensus 111 ~ 111 (353)
+
T Consensus 73 P 73 (492)
T PLN02853 73 P 73 (492)
T ss_pred H
Confidence 5
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.54 Score=42.40 Aligned_cols=71 Identities=14% Similarity=0.041 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCchHH-HHHHHHHCCCCeEEEecc-hHHHhhCCC--------CCCeeEEeC----CCCCCCC---CC-cE
Q 018576 190 NIKQLVDVGGNLGVT-LQAITSKYPYIKGINFDQ-PHVIEHAPL--------HPHIEHVAG----DMFQSVP---KG-DA 251 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~----d~~~~~p---~~-D~ 251 (353)
...++||||+|.... .+--++. .++++++.|+ +..++.|++ .++|+++.. +++..+- +. |+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 357999999997754 3333444 4899999998 667776654 257877654 3444221 22 89
Q ss_pred EEeccccccC
Q 018576 252 IFLKWILHDW 261 (353)
Q Consensus 252 i~~~~~Lh~~ 261 (353)
.+|+--+|.=
T Consensus 181 tmCNPPFy~s 190 (299)
T PF05971_consen 181 TMCNPPFYSS 190 (299)
T ss_dssp EEE-----SS
T ss_pred EecCCccccC
Confidence 9999888863
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.48 Score=39.43 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=47.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCC--ccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGA--RRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~--~~~y~~t~~~~~l~ 106 (353)
+..++..|...+ +++.|..+||+.+++ ++..+.++++-|+..|+|++.+ +..+ .-...+|+.|..++
T Consensus 57 q~~iL~~L~~~~-~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~-~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 57 LFMALITLESQE-NHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE-SDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHHHhcCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCCeeEEEECHHHHHHH
Confidence 345566665321 147899999999999 9999999999999999999973 2111 12355666665544
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.67 Score=35.63 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=44.9
Q ss_pred HHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 30 QAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 30 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..+...|.+...++ |..|+.|++..+|+ +-.-++++++.|++.|-|...
T Consensus 10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~ 59 (127)
T PF06163_consen 10 REELKARIVELVREH---GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH 59 (127)
T ss_pred HHHHHHHHHHHHHHc---CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence 456777888899987 59999999999999 999999999999999999875
|
|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.51 Score=32.95 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.|-++||..+|+ ....+.|.|+.|...|++...
T Consensus 28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~ 61 (76)
T PF13545_consen 28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK 61 (76)
T ss_dssp ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 7899999999999 999999999999999999975
|
... |
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.59 Score=37.89 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
..+..|++.|... +..|..+||+.+|+ .+..+.+=++-|...|++..
T Consensus 9 ~~D~~Il~~Lq~d---~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 9 NLDRGILEALMEN---ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 3577889999986 59999999999999 99999999999999999984
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.98 E-value=0.15 Score=38.45 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred cEEEecccc----ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHH
Q 018576 250 DAIFLKWIL----HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEF 325 (353)
Q Consensus 250 D~i~~~~~L----h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 325 (353)
|+|+|-.|- -+|.|+-...+++++++.|+|||.+++--.-........ .......-++ ..-....+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~F 74 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQF 74 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTT---TS-HHHHHHH-----HH----GGGH
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHHH
Confidence 666665542 235688899999999999999999886322111110000 0000110011 1112345578
Q ss_pred HHHHHh--cCCceeeEeee
Q 018576 326 MTLATG--AGFSGIRSDLV 342 (353)
Q Consensus 326 ~~ll~~--aGf~~v~~~~~ 342 (353)
.++|.+ .||+.++....
T Consensus 75 ~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 75 EDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHTSTTT---EEEEE--
T ss_pred HHHHHhcccceEEEEEccc
Confidence 888877 69998876554
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG1510 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.58 Score=38.11 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=33.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.|+|++||++++|+ ....+..-++-|...+++.+.=
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence 59999999999999 8899999999999999999873
|
|
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.53 Score=38.65 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=43.3
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
-..+..|+.+|.+. +..|..+||+++|+ .+..+.+=++-|...|++..
T Consensus 13 D~~D~~IL~~Lq~d---~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKD---GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34688899999986 59999999999999 99999999999999999984
|
|
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.1 Score=39.33 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=47.2
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
..+..++-.|-.- |+.|+.||++..|+ +...+-..|+.|...|++... .| .+..|+.-
T Consensus 16 ~yEa~vY~aLl~~---g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~--~g-~P~~y~av 73 (247)
T COG1378 16 EYEAKVYLALLCL---GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVI--EG-RPKKYRAV 73 (247)
T ss_pred HHHHHHHHHHHHh---CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEee--CC-CCceEEeC
Confidence 3455666667665 59999999999999 899999999999999999986 34 36778654
|
|
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.75 Score=37.10 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=43.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+..|+..|.+. ++.|..+||+.+|+ .+..+.+-++-|...|++...
T Consensus 8 ~~D~~IL~~L~~d---~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~ 55 (154)
T COG1522 8 DIDRRILRLLQED---ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY 55 (154)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence 3567788999986 58999999999999 999999999999999999875
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.11 E-value=0.61 Score=39.51 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=36.6
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.+... +.+.|++|+|+++|+ +..-++|.|.+|++.|++..+
T Consensus 163 i~~~~~~~--~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKEP--DQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhCc--CCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEE
Confidence 44455521 259999999999999 889999999999999999875
|
|
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.09 E-value=0.68 Score=35.38 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=50.4
Q ss_pred HHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 30 QAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 30 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.+..+..++..|...+ +.+..+||+.+++ ++..+.++++-|+..|++.+..... .-.-.+.+|+.|..+.
T Consensus 20 lt~~q~~~L~~l~~~~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 20 LTPPQYQVLLALYEAG---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 3456777788888753 4444899999999 9999999999999999999973110 0122466666666544
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.42 E-value=3.3 Score=35.90 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=69.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-----hHHHhhCCCCCCeeEEeCCCCCCCCC----C--cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-----PHVIEHAPLHPHIEHVAGDMFQSVPK----G--DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~p~----~--D~i~~~ 255 (353)
+....+||-+|.++|....++..-. |.--+..++. .+.+..|+++++|--+..|+..|..- + |+||+-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 5678999999999999888777655 5544555554 35677888888888888888765421 2 766543
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+-+ .++.+-+.-++.--||+||.++|.-...
T Consensus 234 -vaq---pdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 234 -VAQ---PDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred -CCC---chhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 322 2445666667888999999999865543
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.83 Score=36.25 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=46.2
Q ss_pred eEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC---CCCC-C-cEEEeccccccCC--c-------hHHHHHHHHH
Q 018576 216 KGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ---SVPK-G-DAIFLKWILHDWD--D-------EHCLKLLKNC 273 (353)
Q Consensus 216 ~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~-~-D~i~~~~~Lh~~~--~-------~~~~~~L~~~ 273 (353)
++.++|+ ++.++..+++ +|++++..+-.. .+++ . |+++++.- ++| | +.-...|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5788998 6677666542 578888765443 3455 3 88877744 233 2 2245889999
Q ss_pred HHhCCCCCEEEEEeee
Q 018576 274 YKSVPEDGKVIVVELM 289 (353)
Q Consensus 274 ~~~L~pgG~l~i~e~~ 289 (353)
.+.|+|||.+.|+-..
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999987654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=0.7 Score=44.63 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCCC
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDG 111 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~~ 111 (353)
..+..|+..|.+.+ +..+.++||+.+|+ ++..+.+.+..|.+.|+++...+ ....|.+|+.|..++....+
T Consensus 6 ~~e~~iL~~l~~~~--~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~---~~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESEN--EIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK---KSNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE---EEEEEEECHHHHHHHHcCCH
Confidence 45666778887621 37899999999999 99999999999999999998742 36889999999988887765
Q ss_pred C
Q 018576 112 V 112 (353)
Q Consensus 112 ~ 112 (353)
.
T Consensus 77 E 77 (494)
T PTZ00326 77 E 77 (494)
T ss_pred H
Confidence 3
|
|
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=85.80 E-value=1 Score=31.57 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+..+++.++.+.. .+.+..+|+..+|. +++.+-..++.|...|++.+.
T Consensus 2 ~~~~~~Le~I~rsR~-~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 2 DIQYCLLERIARSRY-NGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred chHHHHHHHHHhcCC-CCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence 345667888887654 47899999999999 999999999999999999987
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=85.67 E-value=0.64 Score=34.97 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=33.9
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-|++.|... |.+|-++||+.+++ ++.-++++|..|...|++...
T Consensus 17 ~Il~~L~~~---~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 17 RILDALLRK---GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHHH-----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence 367788765 48999999999999 999999999999999999765
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.62 E-value=0.83 Score=39.31 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=49.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+..|+..|...- ..+.-.|||+.+|+ .+.++...++-|+..|++.+. ..++|..|..|..++
T Consensus 12 ~fqIL~ei~~~q--p~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~-----gR~~Y~iTkkG~e~l 73 (260)
T COG1497 12 RFQILSEIAVRQ--PRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE-----GRGEYEITKKGAEWL 73 (260)
T ss_pred HHHHHHHHHHhC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec-----CCeeEEEehhHHHHH
Confidence 344555555421 37899999999999 999999999999999999985 256899999887655
|
|
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=85.42 E-value=1.4 Score=34.83 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=40.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
||+|.+|||-..|+ ..+.+.--|.++.+-|-+.+...+| .=+|+++
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q~g--kfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQNG--KFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecCCC--ceEEeCC
Confidence 69999999999999 9999999999999999999985444 4567776
|
The region in question is approximately 150 amino acid residues long. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.88 E-value=6.1 Score=36.75 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=64.7
Q ss_pred CeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCee---EEeCC-CCC---CC--CCC-cEEEeccccc
Q 018576 192 KQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIE---HVAGD-MFQ---SV--PKG-DAIFLKWILH 259 (353)
Q Consensus 192 ~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~---~~~~d-~~~---~~--p~~-D~i~~~~~Lh 259 (353)
.+|+=+||| .|.++..+++.+...++++.|. +.-++.|++..... ....+ ... .. ..+ |+++=.--
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 499999999 5777788999998899999998 77888887732222 22121 100 11 123 87765544
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
....+..+.++++|||++.++-....+
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788899999999999998876554
|
|
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=84.73 E-value=1.2 Score=34.10 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.++|++|||+.+.+ .++.++.+|+-|.+.|.++-.|.
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~pg 54 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQPG 54 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeeeCC
Confidence 47899999999999 99999999999999999998753
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.45 E-value=2.1 Score=37.56 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=33.3
Q ss_pred HHHHhccccCCCC--eEEEEcCCchHHHHHHHHHCCCCeEEEecch
Q 018576 180 NILESYKGFANIK--QLVDVGGNLGVTLQAITSKYPYIKGINFDQP 223 (353)
Q Consensus 180 ~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 223 (353)
.+++... ++++. +|||.=+|+|.-+..++.. +++++.++..
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~ 119 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERN 119 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECC
Confidence 4566555 66555 9999999999999999988 6779999983
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=7.5 Score=38.09 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCC--------------CC--------
Q 018576 190 NIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMF--------------QS-------- 245 (353)
Q Consensus 190 ~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~--------------~~-------- 245 (353)
.+.+|+=+|||. |..+...++.... +++++|. ++..+.+++. ..++...|.. ++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 578999999995 5667777887754 8999998 6677777654 2222211110 01
Q ss_pred ----CCCCcEEEeccccccCCchHHHHH-HHHHHHhCCCCCEEEEEee
Q 018576 246 ----VPKGDAIFLKWILHDWDDEHCLKL-LKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 246 ----~p~~D~i~~~~~Lh~~~~~~~~~~-L~~~~~~L~pgG~l~i~e~ 288 (353)
....|+++-.-.... .....+ .++..+.|||||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 012388877654322 112244 5999999999999887654
|
|
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=84.28 E-value=0.88 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+++ +..-+++-|+.|++.|+++..
T Consensus 22 ~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 22 DRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp SBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 467 99999999999 999999999999999999987
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=84.20 E-value=1.6 Score=38.75 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=47.8
Q ss_pred HHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCE
Q 018576 204 TLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGK 282 (353)
Q Consensus 204 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~ 282 (353)
++..|.+..+..++++.|. +..++.+.+..-+.-...+ .+.+.+.|+|++.- |.....++|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 4677888888999999998 6677777554433333332 11233448888774 335577888888888888765
Q ss_pred EEE
Q 018576 283 VIV 285 (353)
Q Consensus 283 l~i 285 (353)
+.=
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=84.10 E-value=0.85 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=27.5
Q ss_pred CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 51 t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
|.+.||+.+|+ ...-+.+.++.|+..|++
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 999999999999999985
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.07 E-value=6 Score=35.53 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=55.6
Q ss_pred CeEEEEcCC--chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCC-CCCCCCCcEEEeccccccCCchHHH
Q 018576 192 KQLVDVGGN--LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDM-FQSVPKGDAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 192 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~-~~~~p~~D~i~~~~~Lh~~~~~~~~ 267 (353)
.+|+=+|.| .|.++..+.++.+...+++.|. ...++.+....-+.-...+. ......+|+|+.+=-+ ....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-----~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-----EATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-----HHHH
Confidence 467777777 5677777777777778899998 44555554332222222222 1234445988887443 4567
Q ss_pred HHHHHHHHhCCCCCEEE
Q 018576 268 KLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~ 284 (353)
.+++++...|+||..+.
T Consensus 79 ~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 79 EVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHhcccCCCCCEEE
Confidence 88999998888876543
|
|
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=83.98 E-value=1.4 Score=32.14 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+.|+..|... ||-.+.-+|..+++ +..-++..++.|+..|++++.
T Consensus 8 l~~~IL~hl~~~---~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 8 LDLKILQHLKKA---GPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred hHHHHHHHHHHH---CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 356677888886 47899999999999 999999999999999999997
|
|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=83.89 E-value=2.1 Score=35.31 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=32.4
Q ss_pred cEEEeccccccCCc----------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDD----------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|+++++||+++. +...+++++++.+|+|+..++....++
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999875 346688888888888887776665544
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.71 E-value=16 Score=30.75 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHH---C-CCCeEEEecchH--HHhhCCCCCCeeEEeCCCCCC-CC-------CC--cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK---Y-PYIKGINFDQPH--VIEHAPLHPHIEHVAGDMFQS-VP-------KG--DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~---~-p~~~~~~~D~~~--~~~~a~~~~rv~~~~~d~~~~-~p-------~~--D~i~ 253 (353)
++..|+++|.-.|+.++.++.- . ...+++++|+.. .-..|++.++|.|++++-.+| +. +. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4789999999888877765542 2 346888888732 224455578999999987763 21 12 5666
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVP 294 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~ 294 (353)
+-..-|.. +.+.+.|+-....|.-|.++++-|....+-+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 76776653 5567778888888999999999888776543
|
|
| >PRK09775 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=83.63 E-value=1.4 Score=42.37 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=43.2
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
|...|.. ||.|+.||++.+|+ ....+.+.|..| .|+|... +.|. ..+|+++...+
T Consensus 5 ~~~~L~~----g~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~-~~gr-~~~Y~l~~~~~ 59 (442)
T PRK09775 5 LTTLLLQ----GPLSAAELAARLGV----SQATLSRLLAAL--GDQVVRF-GKAR-ATRYALLRPLR 59 (442)
T ss_pred HHHHHhc----CCCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEe-ccCc-eEEEEeccccc
Confidence 4456666 59999999999999 999999999999 8888876 3443 56687775543
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.26 E-value=3.4 Score=39.37 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCC------C-CCeeEEeCCCCC---CCC--CC-cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPL------H-PHIEHVAGDMFQ---SVP--KG-DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~-~rv~~~~~d~~~---~~p--~~-D~i~ 253 (353)
.+..+.|+|.|.|.-...+....+. -.++.+|. ..+...... + .++-....-+.. |.+ .+ |+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 4568888998877655555555544 35788887 334433321 1 112222212322 333 23 9999
Q ss_pred eccccccCCchHHH-HHHH-HHHHhCCCCCEEEEEeeec
Q 018576 254 LKWILHDWDDEHCL-KLLK-NCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~-~~L~-~~~~~L~pgG~l~i~e~~~ 290 (353)
++++||.+.....+ .+.+ -.+...++|++++++|...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999998755532 3333 3456678999999999654
|
|
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=83.24 E-value=1.4 Score=41.96 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=36.9
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.|.|.++|++.+++ ++..++++|+.|...|++.+. +++.|.+.
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~-----~~g~~~l~ 351 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRG-----ERGQWVLA 351 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEec-----CCCceEec
Confidence 58999999999999 999999999999999999864 23456554
|
|
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=82.46 E-value=1.4 Score=37.32 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=38.0
Q ss_pred HHhChhhhhhh----cCCCCCCCHHHHHHhCCCCCCCC-cCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDK----AGPGAKLSASDIAAQLPTKNKDA-PTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~----~~~~~~~t~~ela~~~~~~~~~~-~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|++.|.+ .+ -|.|+.|||+.+|+ . +.-+.+.|+.|...|++++.
T Consensus 7 ~q~~iL~~l~~~~~~~~--~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~ 59 (199)
T TIGR00498 7 RQQEVLDLIRAHIESTG--YPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD 59 (199)
T ss_pred HHHHHHHHHHHHHHhcC--CCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC
Confidence 34445555553 11 36789999999999 7 88999999999999999986
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=82.25 E-value=1.5 Score=38.74 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=40.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|.+.|.+. +..|+.|||+.+++ .+.-++|-|+.|++.|++.+.
T Consensus 7 ~~~Il~~l~~~---~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~ 52 (251)
T PRK13509 7 HQILLELLAQL---GFVTVEKVIERLGI----SPATARRDINKLDESGKLKKV 52 (251)
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34477888876 58999999999999 999999999999999999976
|
|
| >PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4 | Back alignment and domain information |
|---|
Probab=82.05 E-value=1 Score=31.54 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=23.9
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
++..|.++ .|+|+++||.++|. ...-++..|..+.
T Consensus 29 LLr~LA~G---~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG---QPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT---S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcC---CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 78889885 69999999999999 6666666665554
|
99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A. |
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=82.02 E-value=2.3 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCCHHHHHHhC--CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 49 KLSASDIAAQL--PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 49 ~~t~~ela~~~--~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
..+.++||+.+ ++ ...-++.-|+.|...|++++. +++.|..|..+-.
T Consensus 39 ~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~-----~~g~y~~t~~~l~ 87 (171)
T PF14394_consen 39 APDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD-----GDGKYVQTDKSLT 87 (171)
T ss_pred CCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC-----CCCcEEEecceee
Confidence 33899999999 99 899999999999999999986 2568998865443
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.93 E-value=7.4 Score=35.40 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=49.7
Q ss_pred CCeEEEEcCCc-h-HHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHH
Q 018576 191 IKQLVDVGGNL-G-VTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCL 267 (353)
Q Consensus 191 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~ 267 (353)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......+..+...+.|+|++.-. .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788899885 3 33344444322247889998 45555544322111111121112233488877643 33446
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018576 268 KLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 268 ~~L~~~~~~L~pgG~l~i 285 (353)
.+++.+...++||..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 778888888888875544
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.93 E-value=4.1 Score=35.80 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCC--CC-cEEEeccccccCCchH
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVP--KG-DAIFLKWILHDWDDEH 265 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p--~~-D~i~~~~~Lh~~~~~~ 265 (353)
.++..-+|+|...|+++-.|.++ ++.++.+|...|.+..-.+++|+....|-|+-.| .. |-.+|-.|= +
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE------k 281 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE------K 281 (358)
T ss_pred cCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc------C
Confidence 46789999999999999999998 7899999987777777777889999999888444 33 666665442 2
Q ss_pred HHHHHHHHHHhCCCC
Q 018576 266 CLKLLKNCYKSVPED 280 (353)
Q Consensus 266 ~~~~L~~~~~~L~pg 280 (353)
..++-..+...|..|
T Consensus 282 P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 PARVAALIAKWLVNG 296 (358)
T ss_pred cHHHHHHHHHHHHcc
Confidence 234444445555544
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=81.71 E-value=2.5 Score=38.06 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=65.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC----C--CCeeEEeCCCCCC----CCC-CcEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL----H--PHIEHVAGDMFQS----VPK-GDAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~--~rv~~~~~d~~~~----~p~-~D~i~~ 254 (353)
..++.+|||..++.|+=+..+++..+ ...++..|. +.-+...++ . ..+.....|.... .+. .|.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999986 578999997 433333222 1 4455555554331 111 144443
Q ss_pred c------cccccCC-------chH-------HHHHHHHHHHhC----CCCCEEEEEeeec
Q 018576 255 K------WILHDWD-------DEH-------CLKLLKNCYKSV----PEDGKVIVVELML 290 (353)
Q Consensus 255 ~------~~Lh~~~-------~~~-------~~~~L~~~~~~L----~pgG~l~i~e~~~ 290 (353)
- .++..-+ ..+ -.++|+++.+.+ +|||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 1 1111111 111 237899999999 9999999887654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus | Back alignment and domain information |
|---|
Probab=81.33 E-value=2.6 Score=29.08 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=38.3
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|...++. +..|.++|-+.+|+ +..-+...|.-|+..|++.+.
T Consensus 8 ~~IL~~ls~----~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 8 QKILIILSK----RCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHHHh----ccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 345666776 48999999999999 889999999999999999985
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=81.26 E-value=3.7 Score=36.10 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCchHHHHH---HHHHC--CCCeEEEecc----hHHHh---------------------------hCCCC-
Q 018576 190 NIKQLVDVGGNLGVTLQA---ITSKY--PYIKGINFDQ----PHVIE---------------------------HAPLH- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~---l~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~~- 232 (353)
=+..|+++||=.|..++. +++.+ ++-++.++|. |+.-. +..+.
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357999999998876654 34444 4567888884 22111 11111
Q ss_pred ---CCeeEEeCCCCCCCCCC---cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 233 ---PHIEHVAGDMFQSVPKG---DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 233 ---~rv~~~~~d~~~~~p~~---D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++++++.|.|.+-+|.. .+.++. +=-++= +-...+|..++..|.|||.+++=|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~-lD~DlY-esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLH-LDCDLY-ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEE-E---SH-HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEE-Eeccch-HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 47999999987644432 222222 111121 2256899999999999999998543
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) | Back alignment and domain information |
|---|
Probab=80.39 E-value=1.4 Score=32.82 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=38.2
Q ss_pred HHhChhhhhhh-cCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDK-AGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+-.|++.|.. .....++++++|++.+++ +..-++..|+.|...|++--.
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEecc
Confidence 45566666665 111257999999999999 999999999999999998643
|
RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A. |
| >PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B | Back alignment and domain information |
|---|
Probab=80.19 E-value=1.9 Score=26.38 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHH
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L 77 (353)
++..|+..|... +..|..+||+.+|+ .+..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d---~r~s~~~la~~lgl----S~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQED---GRRSYAELAEELGL----SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH----TTS-HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCccHHHHHHHHCc----CHHHHHHHHHHh
Confidence 456788888886 58999999999999 777666544443
|
... |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=80.08 E-value=4.6 Score=35.79 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=31.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-----PYIKGINFDQ 222 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~ 222 (353)
+.+...++|+|||.|.++..+.+.. +..+++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4667899999999999999999988 5678999997
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 353 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-117 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 1e-103 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-103 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 3e-74 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-64 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 4e-35 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 2e-34 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 4e-31 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 2e-28 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 3e-28 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 3e-28 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 9e-20 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 6e-17 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 2e-16 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 7e-15 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 2e-14 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 1e-10 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 3e-08 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 1e-07 | ||
| 2r3s_A | 335 | Crystal Structure Of A Putative O-methyltransferase | 6e-06 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 3e-05 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
| >pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase (npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A Resolution Length = 335 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 443 bits (1142), Expect = e-157
Identities = 187/366 (51%), Positives = 235/366 (64%), Gaps = 13/366 (3%)
Query: 1 MGSIVDGE---------RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAG-PGAKL 50
MGS + E +++ +A QLA VLPMA++A EL + +I+ K+ P +
Sbjct: 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60
Query: 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVP 107
S ++IAAQLPT N +AP MLDR+LRLLASYSVV +L R Y L V K+
Sbjct: 61 SPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTK 120
Query: 108 NKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFN 167
N+DGVSL P L + DKV LE W +LKDAILEGGIPFN+A+GM+ F+Y D R NK FN
Sbjct: 121 NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFN 180
Query: 168 TAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIE 227
M +++++ M ILE Y GF + +VDVGG G I +KYP I INFD PHVI+
Sbjct: 181 KGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240
Query: 228 HAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287
AP +EH+ GDMF VPKGDAIF+KWI HDW DEHCLKLLKNCY ++P+ GKVIV E
Sbjct: 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300
Query: 288 LMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFW 347
+LP P+ SI +K H D LM+ NPGGKERT+ EF LA +GF G + N +
Sbjct: 301 YILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTY 360
Query: 348 VMEFYK 353
VMEF K
Sbjct: 361 VMEFLK 366
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 431 bits (1109), Expect = e-152
Identities = 176/361 (48%), Positives = 237/361 (65%), Gaps = 9/361 (2%)
Query: 1 MGSIVDG----ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIA 56
MGS + + +A QLA +VLPM ++ ELG+ +I+ AG + L+ +++A
Sbjct: 5 MGSTAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKS-LTPTEVA 63
Query: 57 AQLPT-KNKDAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVPNKDGV 112
A+LP+ N +AP M+DRILRLLASY+VV C + R Y V K+ PN+DGV
Sbjct: 64 AKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGV 123
Query: 113 SLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYN 172
S+ M QDKV +ESW +LKDA+L+GGIPFN+A+GM AFEY DPRFN+ FN M N
Sbjct: 124 SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 183
Query: 173 HTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH 232
H+ +I +LE Y GF + LVDVGG +G T+ AI + YP IKG+NFD PHVI AP
Sbjct: 184 HSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF 243
Query: 233 PHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292
P + HV GDMF+ VP GD I +KWILHDW D+HC LLKNCY ++P GKV++V+ +LP
Sbjct: 244 PGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303
Query: 293 VPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
P + S+ H+D++M+ NPGG+ER + EF LA GAGF+G++S + N W +EF
Sbjct: 304 NPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363
Query: 353 K 353
K
Sbjct: 364 K 364
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 422 bits (1087), Expect = e-148
Identities = 154/361 (42%), Positives = 215/361 (59%), Gaps = 9/361 (2%)
Query: 1 MGSIVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAG-PGAKLSASDIAAQL 59
+ + + D + A L V P + A +L +F+II KA PGA +S S+IA++L
Sbjct: 13 ISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKL 72
Query: 60 P--TKNKDAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVPNKDGVSL 114
P T++ D P LDR+LRLLASYSV+ + + GA R Y L+ V KY VP++ L
Sbjct: 73 PASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYL 132
Query: 115 GPALQMIQDKVFLESWSHLKDAILEGGI-PFNRAHGMHAFEYGRVDPRFNKHFNTAMYNH 173
+ L+ W + K+A+++ I F HG+ +E+ D + N+ FN +M +
Sbjct: 133 ASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 192
Query: 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHP 233
+ M +LE Y GF I LVDVGG G L+ I SKYP IKGINFD P VIE+AP
Sbjct: 193 CATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS 252
Query: 234 HIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293
IEHV GDMF SVP+GDA+ LK + H+W DE C++ L NC+K++ +GKVI+VE +LPE
Sbjct: 253 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEE 312
Query: 294 PNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR-SDLVTGNFWVMEFY 352
PNTS ESK S +D LM GG+ERT+ ++ L+ +GFS + + + VMEFY
Sbjct: 313 PNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
Query: 353 K 353
K
Sbjct: 372 K 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 392 bits (1009), Expect = e-137
Identities = 100/360 (27%), Positives = 173/360 (48%), Gaps = 17/360 (4%)
Query: 1 MGSIVDGERD----QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIA 56
M S ++G + ++ A + + M+++ E+ I II G S S++
Sbjct: 1 MASSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPI--SLSNLV 58
Query: 57 AQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGP 116
+ L + + R++R LA E Y+L S+ V D L P
Sbjct: 59 SILQVPSSKIG-NVRRLMRYLAHNGFFEIITKEEE---SYALTVASELLVRGSDL-CLAP 113
Query: 117 ALQMIQDKVFLESWSHLKDAILEGGI-PFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTS 175
++ + D S+ LK I E + F G +++ +P +N FN AM + +
Sbjct: 114 MVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSK 173
Query: 176 LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHI 235
LI + + F ++ +VDVGG G T + I +P +K I FD+P V+E+ ++
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 236 EHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPED---GKVIVVELMLPE 292
+V GDMF S+P DA+ LK+ILH+W D+ CL++LK C ++V D GKV ++++++ +
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293
Query: 293 VPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
+ + ++ +DV M GKER + E+ L AGF + +TG ++E Y
Sbjct: 294 KKDENQVTQIKLLMDVNMAC--LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 378 bits (973), Expect = e-131
Identities = 86/352 (24%), Positives = 142/352 (40%), Gaps = 26/352 (7%)
Query: 6 DGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKD 65
D +R QS + AMG A++A +G+ + GP + +++AA T
Sbjct: 16 DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHL-VDGP---RTPAELAAATGTD--- 68
Query: 66 APTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV 125
L R+LRLLA VV S DG R++L + V + M D +
Sbjct: 69 -ADALRRVLRLLAVRDVVRES-DG-----RFALTDKGAALRSD-SPVPARAGILMFTDTM 120
Query: 126 FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESY 185
F + A+ F G Y D + M ++ + +
Sbjct: 121 FWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG 180
Query: 186 KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPH-----IEHVAG 240
F + DVGG G L + ++P ++G+ D+ V+ L + V G
Sbjct: 181 -DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEG 239
Query: 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES 300
D + VP D LK ILH+W DE +++L NC + +P G+V+V++ ++PE ++
Sbjct: 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGN----DA 295
Query: 301 KSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
+ +D +M+ G+ERT E L T AG R + +
Sbjct: 296 HQSKEMDFMMLA-ARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGV 346
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-130
Identities = 83/355 (23%), Positives = 158/355 (44%), Gaps = 29/355 (8%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAP 67
R + N + G A+ ELG+ +++ + GP +A+ +A
Sbjct: 34 ARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE-GP---RTATALAEATGAH----E 85
Query: 68 TMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL 127
L R+LRLLA+ V + G ++ N++S +P+ + +
Sbjct: 86 QTLRRLLRLLATVGVFDDL----GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHW 140
Query: 128 ESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKG 187
+W L ++ G F+ A+G ++ DP+ + FN AM + + + +Y
Sbjct: 141 RAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD- 199
Query: 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP-------LHPHIEHVAG 240
F+ VD+GG G + A+ +P ++G ++P V E A L E + G
Sbjct: 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259
Query: 241 DMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIE 299
D F+++P G D +K +LHDWDD+ +++L+ ++ D +++V++ ++ E P
Sbjct: 260 DFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERP----- 314
Query: 300 SKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR-SDLVTGNFWVMEFYK 353
+ S +D+L++ GG ER++ EF L +G R G ++E +
Sbjct: 315 AASTLFVDLLLLV-LVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 375 bits (964), Expect = e-130
Identities = 102/359 (28%), Positives = 169/359 (47%), Gaps = 17/359 (4%)
Query: 6 DGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKD 65
+ E + + + V MA+++ ELGI I G + S++A+ L +
Sbjct: 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPM--TLSELASSLKL-HPS 60
Query: 66 APTMLDRILRLLASYSVVECSLD-----GSGARRRYSLNSVSKYYVPNKDGVSLGPALQM 120
+L R LRLL ++ YSL SK + K L ++
Sbjct: 61 KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIVKG 119
Query: 121 IQDKVFLESWSHLKDAILEGG--IPFNRAHGMHAFEYGRVDPRFN--KHFNTAMYNHTSL 176
L+ WS K E F A G +++ D + F AM + + +
Sbjct: 120 ALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRM 179
Query: 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIE 236
+ E+ + F ++ LVDVGG G + I +P++K FDQP V+ + + ++
Sbjct: 180 FKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN 239
Query: 237 HVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVP---EDGKVIVVELMLPEV 293
V GDMF+S+P DA+ LKW+LHDW+DE LK+LKN +++ +DGKVI++++ + E
Sbjct: 240 FVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDET 299
Query: 294 PNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
+ ++ D++M+T GKERTK E+ L AGFS + ++G ++E Y
Sbjct: 300 SDDRGLTELQLDYDLVMLTMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 371 bits (954), Expect = e-128
Identities = 78/370 (21%), Positives = 143/370 (38%), Gaps = 32/370 (8%)
Query: 1 MGSIVDGER----DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIA 56
M S GE DQ + V PMA++ L + + AG + + +A
Sbjct: 1 MSSSSPGEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL-LAGA---DTLAGLA 56
Query: 57 AQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGP 116
+ T P L R++R L V+E R +
Sbjct: 57 DRTDT----HPQALSRLVRHLTVVGVLEGGEKQ---GRPLRPTRLGMLLADGHPAQQRAW 109
Query: 117 ALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSL 176
+++ L D + G + +G +E D F+ M L
Sbjct: 110 LDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDL 169
Query: 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP------ 230
++Y ++ ++ ++DVGG G L AI + P+++G + E A
Sbjct: 170 AYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADA 228
Query: 231 -LHPHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288
L + GD F+ +P D + L ++L +W DE L +L+ C +++ G+++V++
Sbjct: 229 GLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288
Query: 289 MLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR-----SDLVT 343
E + ++ +D+ M+T GG+ RT+ E + LA AG + S +
Sbjct: 289 ADVEGDGA--DRFFSTLLDLRMLT-FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLP 345
Query: 344 GNFWVMEFYK 353
+F ++EF
Sbjct: 346 FDFSILEFTA 355
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 357 bits (919), Expect = e-123
Identities = 80/353 (22%), Positives = 132/353 (37%), Gaps = 33/353 (9%)
Query: 7 GERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDA 66
G+R + PMA++ L + I AG +A++IA+
Sbjct: 2 GKRAAHIGL--RALADLATPMAVRVAATLRVADHI-AAGH---RTAAEIASAAGAH---- 51
Query: 67 PTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVF 126
LDR+LR L + + G Y L + +
Sbjct: 52 ADSLDRLLRHLVAVGLFTRDGQG-----VYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRG 106
Query: 127 LESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYK 186
+ L +I G + +G +E DP + F+T M +H L + I Y
Sbjct: 107 DLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD 166
Query: 187 GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP-------LHPHIEHVA 239
+A + +VDVGG G L A+ + + + G D A L + V
Sbjct: 167 -WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVV 225
Query: 240 GDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSI 298
G F +P G L +LHDWDD + +L+ C ++ G V+V+E +
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG------- 278
Query: 299 ESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEF 351
+ + + +D+ M+T GGKER+ E LA AG + + ++E
Sbjct: 279 DEHAGTGMDLRMLTYF-GGKERSLAELGELAAQAGLAVRAA-HPISYVSIVEM 329
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 354 bits (911), Expect = e-122
Identities = 66/348 (18%), Positives = 133/348 (38%), Gaps = 31/348 (8%)
Query: 18 QLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77
PM ++ L + I AG + +AA+ T+ P L R++R L
Sbjct: 25 IRLGSLHTPMVVRTAATLRLVDHIL-AGA---RTVKALAARTDTR----PEALLRLIRHL 76
Query: 78 ASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAI 137
+ ++E G + V + + S++ L DAI
Sbjct: 77 VAIGLLEEDAPG-----EFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAI 131
Query: 138 LEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDV 197
G + +G +E P F++ + + +Y + N++ ++DV
Sbjct: 132 RTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLDV 190
Query: 198 GGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP-------LHPHIEHVAGDMFQSVPKG- 249
GG G AI + P++ + ++ A L ++ V GD F+ +P+
Sbjct: 191 GGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKA 250
Query: 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL 309
DAI L ++L +W D +++L C +++ G++++ E + + + +D+
Sbjct: 251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFT---ELDLR 307
Query: 310 MMTQNPGGKERTKHEFMTLATGAGFSGIR-----SDLVTGNFWVMEFY 352
M+ GG RT+ ++ LA AG S + + ++
Sbjct: 308 MLV-FLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 354
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-120
Identities = 78/344 (22%), Positives = 133/344 (38%), Gaps = 32/344 (9%)
Query: 18 QLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77
Q+ G + LG+ +I+ G S +AA + + + R++RLL
Sbjct: 14 QVVTGEWKSRCVYVATRLGLADLIES-GI---DSDETLAAAVGSD----AERIHRLMRLL 65
Query: 78 ASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAI 137
++ + + Y+ S + S + ++ F +W+ +A+
Sbjct: 66 VAFEIFQGDTRD-----GYANTPTSHLLRDVEG--SFRDMVLFYGEE-FHAAWTPACEAL 117
Query: 138 LEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDV 197
L G F A G + Y + P + F AM ++L I F + VDV
Sbjct: 118 LSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLL-DFRG-RSFVDV 174
Query: 198 GGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP-------LHPHIEHVAGDMFQSVP-KG 249
GG G +AI P +G+ D+ + A + V GDM Q VP G
Sbjct: 175 GGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNG 234
Query: 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL 309
D L I+ D D+ L+LL NC +++ DG+V+V+E + S + DV
Sbjct: 235 DIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASE----PSPMSVLWDVH 290
Query: 310 MMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353
+ G+ RT E + L GF+ R + ++ +
Sbjct: 291 LFM-ACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = e-102
Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 32/346 (9%)
Query: 18 QLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77
A++A EL +F I + G S+ +A + T + + L
Sbjct: 12 NTVNAYQRSAAIKAAVELNVFTAISQ-GI---ESSQSLAQKCQTS----ERGMRMLCDYL 63
Query: 78 ASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAI 137
+ Y L S S ++ + +G A++ + + ++ L A+
Sbjct: 64 VIIGFMTKQ------AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAV 117
Query: 138 LEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDV 197
L+GG + + V +F K + M N LI + E+ +++D+
Sbjct: 118 LKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLVNEN---KIEPLKVLDI 172
Query: 198 GGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPH-------IEHVAGDMFQSV--PK 248
+ G+ A+ P + D V+E A + +AG F+
Sbjct: 173 SASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGND 232
Query: 249 GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDV 308
D + L LH +D C +LL+ ++ +GKVIV + + T ++ +
Sbjct: 233 YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAA---AFSL 289
Query: 309 LMMTQNPGGKERTKHEFMTLATGAGFSGIR-SDLVTGNFWVMEFYK 353
+M+ P G T E+ ++ + AGFS + L T V+ YK
Sbjct: 290 VMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAYK 335
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 298 bits (764), Expect = 1e-99
Identities = 58/346 (16%), Positives = 130/346 (37%), Gaps = 33/346 (9%)
Query: 17 NQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRL 76
+ G + M+A EL +F + + GP + +AA + P L+ +L
Sbjct: 36 ELVFKGLIEFSCMKAAIELDLFSHMAE-GP---KDLATLAADTGS----VPPRLEMLLET 87
Query: 77 LASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL--ESWSHLK 134
L V+ DG ++SL + Y + + FL + + L
Sbjct: 88 LRQMRVINLE-DG-----KWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLS 141
Query: 135 DAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQL 194
A + G F Y V N +F ++ + +LE K +K++
Sbjct: 142 QA-VRGQKNFK-----GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKM 194
Query: 195 VDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPH-------IEHVAGDMFQ-SV 246
+DVGG +G A+ +P + + P I+ + + +A D+++ S
Sbjct: 195 IDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESY 254
Query: 247 PKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306
P+ DA+ IL+ +++ + K + ++ G+++++++++ + N + + S+ +
Sbjct: 255 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYIL 314
Query: 307 DVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352
M + + + + G+ + + V
Sbjct: 315 GAGMPFS--VLGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVK 358
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 1e-91
Identities = 49/348 (14%), Positives = 111/348 (31%), Gaps = 39/348 (11%)
Query: 3 SIVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTK 62
S D S +L+ + +F + + +++AA
Sbjct: 15 STEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG-----RTPAEVAASFGM- 68
Query: 63 NKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYY-VPNKDGVSLGPALQMI 121
+L LA+ ++ + ++++ Y +GP ++
Sbjct: 69 ---VEGKAAILLHALAALGLLTKE------GDAFRNTALTERYLTTTSAD-YIGPIVEH- 117
Query: 122 QDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNI 181
+ ++W L + + + D R FN AM + ++ +
Sbjct: 118 -QYLQWDNWPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVV 171
Query: 182 LESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPH------- 234
E FA + ++D+ G G L + ++P + G +D P + A H
Sbjct: 172 SELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGR 230
Query: 235 IEHVAGDMFQSVP----KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290
+E ++ + D + L LH +D +++ + V G ++++ + +
Sbjct: 231 VEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTM 290
Query: 291 PEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338
+ T S + MM G+ + AG +
Sbjct: 291 NDDRVTPALSA---DFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 274 bits (702), Expect = 2e-90
Identities = 51/342 (14%), Positives = 105/342 (30%), Gaps = 29/342 (8%)
Query: 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM 69
++ A ++A G V+ + + + GIFQ++ G + +I+ +
Sbjct: 13 AEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREG--YTLQEISGRTGL----TRYA 66
Query: 70 LDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLES 129
+L + + RY L + + + + V +
Sbjct: 67 AQVLLEASLTIGTILLE------EDRYVLAKAGWFLLND----KMARVNMEFNHDVNYQG 116
Query: 130 WSHLKDAILEGGIPFNRAHGMHAFEYGRV--DPRFNKHFNTAMYNHTSLIMSNILESYKG 187
HL++A+L G + G Y + P + + S
Sbjct: 117 LFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF 176
Query: 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHP-------HIEHVAG 240
+ K+L+D+GGN G ++ D P +E I
Sbjct: 177 SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGA 236
Query: 241 DMF---QSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT 296
++ P G DA+++ L + +E + +L +S+ +D KV ++E +
Sbjct: 237 NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYE 296
Query: 297 SIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338
+ N K + + AG
Sbjct: 297 TASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEE 338
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 24/181 (13%)
Query: 171 YNHTS---LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIE 227
+H + S + + +D G +G + + +K + H++E
Sbjct: 71 MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLE 130
Query: 228 HA----PLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPED 280
A P + + M ++P D I ++W D +K K+C +++ +
Sbjct: 131 EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN 190
Query: 281 GKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340
G + E + + K +S + R+ + L +G ++
Sbjct: 191 GYIFFKENCST--GDRFLVDKEDSSL------------TRSDIHYKRLFNESGVRVVKEA 236
Query: 341 L 341
Sbjct: 237 F 237
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-06
Identities = 24/190 (12%), Positives = 58/190 (30%), Gaps = 26/190 (13%)
Query: 165 HFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQP 223
H ++ N + + L +D G +G + + + ++
Sbjct: 54 HISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT-E 112
Query: 224 HVIEHA------PLHPHIEHVAGDMFQSVPKG---DAIFLKWILHDWDDEHCLKLLKNCY 274
+ A + + P+ D I+++W++ D+H + L+ C
Sbjct: 113 DFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK 172
Query: 275 KSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334
S+ +G +++ + M E +D + R + AG
Sbjct: 173 GSLRPNGIIVIKDNMAQEGVIL-------DDVDSSVC--------RDLDVVRRIICSAGL 217
Query: 335 SGIRSDLVTG 344
S + +
Sbjct: 218 SLLAEERQEN 227
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 24/190 (12%)
Query: 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIE----HAPLHPHI 235
+ ++D+G G+ + KYP D ++E + +
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKV 94
Query: 236 EHVAGDMFQSVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293
+++ D + + D + +H +DE +L K Y + E G I +L+ E
Sbjct: 95 KYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE- 153
Query: 294 PNTSIESKSNSHIDVLMMTQNPGGKER--------------TKHEFMTLATGAGFSGIRS 339
T+ N I + + +E ++ + AGF +
Sbjct: 154 --TAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSC 211
Query: 340 DLVTGNFWVM 349
F VM
Sbjct: 212 IYKYYQFAVM 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.78 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.77 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.77 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.77 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.76 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.75 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.74 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.74 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.74 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.74 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.73 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.73 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.73 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.73 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.72 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.72 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.71 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.71 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.7 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.7 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.69 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.69 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.69 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.69 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.69 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.69 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.69 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.68 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.68 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.68 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.67 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.66 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.65 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.65 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.64 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.64 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.63 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.63 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.62 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.62 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.62 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.61 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.61 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.6 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.6 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.58 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.58 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.55 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.53 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.53 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.53 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.52 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.52 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.52 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.52 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.52 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.51 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.51 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.51 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.51 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.5 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.49 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.49 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.47 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.47 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.46 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.46 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.45 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.45 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.43 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.43 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.42 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.41 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.39 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.38 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.37 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.37 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.36 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.34 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.34 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.34 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.34 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.33 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.33 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.33 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.32 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.32 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.32 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.31 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.31 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.31 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.31 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.3 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.3 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.3 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.29 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.29 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.29 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.29 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.28 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.28 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.28 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.28 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.28 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.27 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.27 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.27 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.26 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.26 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.26 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.25 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.24 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.24 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.23 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.23 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.21 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.21 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.21 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.21 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.2 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.2 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.2 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.19 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.18 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.18 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.18 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.15 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.15 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.15 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.14 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.14 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.14 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.14 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.14 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.13 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.13 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.13 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.13 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.13 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.12 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.12 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.12 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.1 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.09 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.08 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.08 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.08 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.06 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.06 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.06 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.05 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.04 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.03 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.02 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.02 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.02 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.02 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.0 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.99 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.99 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.99 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.99 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.99 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.99 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.98 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.98 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.98 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.97 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.97 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.97 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.97 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.96 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.96 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.95 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.95 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.93 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.93 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.92 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.91 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.9 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.89 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.88 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.87 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.83 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.83 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.83 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.82 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.82 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.81 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.8 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.8 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.78 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.76 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.72 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.68 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.68 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.66 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.66 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.63 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.61 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.58 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.51 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.51 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.51 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.5 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.48 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.48 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.47 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.46 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.46 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.46 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.44 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.43 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.42 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.4 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.39 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.38 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.37 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.32 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.32 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.31 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.3 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.28 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.26 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.24 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.17 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.12 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 98.06 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.05 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.02 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.0 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.93 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.92 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.9 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.9 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.86 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.8 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.72 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.71 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.62 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.61 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.6 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.53 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.51 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.49 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.47 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.42 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.41 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.26 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.25 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.25 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.19 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 97.17 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 97.12 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.12 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 97.1 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 97.08 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.04 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 97.03 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.97 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.94 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.9 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.76 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.74 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.7 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 96.7 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 96.68 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 96.63 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.57 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 96.55 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 96.5 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 96.5 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.46 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.45 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 96.31 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 96.29 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 96.27 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.2 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 96.2 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 96.16 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.15 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 96.15 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 96.01 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.99 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 95.95 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.9 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.89 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 95.85 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 95.83 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 95.79 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 95.76 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.72 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.64 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.62 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.6 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 95.6 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 95.59 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 95.55 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.53 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 95.42 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 95.41 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 95.39 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 95.38 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 95.28 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 95.26 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 95.25 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 95.22 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 95.2 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 95.19 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 95.08 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 95.05 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 95.04 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 94.95 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 94.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.95 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 94.91 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 94.9 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 94.89 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 94.89 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 94.87 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 94.82 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 94.81 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 94.78 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 94.77 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 94.72 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 94.7 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 94.66 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 94.65 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 94.63 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.56 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 94.56 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 94.55 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 94.51 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 94.48 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 94.48 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 94.4 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 94.36 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 94.32 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 94.28 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 94.28 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 94.26 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 94.26 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 94.26 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 94.24 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 94.2 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 94.18 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 94.16 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.16 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 94.15 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 94.14 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 94.14 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 94.12 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 94.08 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 94.08 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 94.07 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 94.06 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 94.05 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 93.89 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 93.84 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 93.76 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 93.76 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 93.7 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 93.62 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 93.58 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 93.57 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 93.49 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 93.14 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 93.11 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 93.09 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 92.93 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 92.81 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 92.8 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 92.73 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 92.65 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 92.62 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 92.53 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 92.53 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 92.4 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 92.36 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 92.36 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 92.35 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 92.24 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 92.14 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 91.95 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 91.85 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 91.81 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 91.76 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 91.73 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 91.61 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 91.59 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 91.55 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 91.23 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 91.23 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 91.17 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 91.11 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 91.05 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 90.93 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 90.91 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 90.49 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 90.38 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 90.32 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 90.14 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.06 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 89.96 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 89.82 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 89.6 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 89.52 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 89.33 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 89.29 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 89.25 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.06 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 88.99 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 88.89 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 88.64 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 88.6 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 88.28 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 87.11 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 87.03 | |
| 4esb_A | 115 | Transcriptional regulator, PADR family; DNA bindin | 86.92 | |
| 2vxz_A | 165 | Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py | 86.78 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 86.73 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 86.62 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 86.36 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 86.27 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 86.15 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 85.59 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 85.28 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 85.26 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 85.12 | |
| 2o0m_A | 345 | Transcriptional regulator, SORC family; structural | 84.84 | |
| 2p8t_A | 200 | Hypothetical protein PH0730; pyrococcus horikoshii | 84.66 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 84.28 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 84.11 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 83.66 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 82.87 | |
| 2pjp_A | 121 | Selenocysteine-specific elongation factor; SELB, p | 82.85 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 82.48 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 82.37 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 82.35 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 82.31 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 82.06 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 81.76 | |
| 2ek5_A | 129 | Predicted transcriptional regulators; helix-turn-h | 80.6 | |
| 3tqn_A | 113 | Transcriptional regulator, GNTR family; regulatory | 80.55 | |
| 3ri2_A | 123 | Transcriptional regulator, PADR-like family; PSI-b | 80.33 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-57 Score=417.06 Aligned_cols=331 Identities=24% Similarity=0.389 Sum_probs=296.7
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
++++++.|++++.||+.+++|++|+++||||.|.+++ +|.|++|||+++|+ +++.++|||++|++.|++++..+
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~ 78 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETR 78 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEecc
Confidence 4588999999999999999999999999999999853 69999999999999 99999999999999999987633
Q ss_pred CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccC---CChhhhcccCchHHHH
Q 018576 89 GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHG---MHAFEYGRVDPRFNKH 165 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g---~~~~~~~~~~~~~~~~ 165 (353)
++ .++|++|+.++.++.+.++.++++++.+. .+..+..|.+|.+++++|++++...+| .++|+++.++++....
T Consensus 79 ~~--~~~y~~t~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 155 (353)
T 4a6d_A 79 GG--KAFYRNTELSSDYLTTVSPTSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQ 155 (353)
T ss_dssp TT--EEEEEECHHHHHHHSTTSTTCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHH
T ss_pred Cc--cceeeCCHHHHHHhhcCCchHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHH
Confidence 32 57899999999888777777899888875 467788999999999999999888887 3578888999999999
Q ss_pred HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC------CCCeeEEe
Q 018576 166 FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL------HPHIEHVA 239 (353)
Q Consensus 166 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~rv~~~~ 239 (353)
|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+||+++.
T Consensus 156 f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~ 234 (353)
T 4a6d_A 156 FMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQE 234 (353)
T ss_dssp HHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeec
Confidence 999999988888888999888 88889999999999999999999999999999999999887754 27899999
Q ss_pred CCCCC-CCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 240 GDMFQ-SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 240 ~d~~~-~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
+|+++ +.|.+|+|+++++||+|+|+++.++|++++++|+|||+++|+|.+.+++...+ .....+++.|+.++ +|+
T Consensus 235 gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-~g~ 310 (353)
T 4a6d_A 235 GDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-EGQ 310 (353)
T ss_dssp SCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-SCC
T ss_pred CccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-CCc
Confidence 99998 56667999999999999999999999999999999999999999987654332 23456788888876 999
Q ss_pred ccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+||.+||+++|++|||+.+++.+.+...++|+++|
T Consensus 311 ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 311 ERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 99999999999999999999999999999999987
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-55 Score=407.83 Aligned_cols=348 Identities=50% Similarity=0.933 Sum_probs=304.1
Q ss_pred CCccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCC-CCCCCcCcHHHHHHHHhcccce
Q 018576 5 VDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPT-KNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~r~L~~L~~~g~l 83 (353)
...++.+++..+++++.+++.+++|++|+++|||+.|.+.| ++|+|++|||+++|+ +++..+..++||||+|++.|+|
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l 91 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVV 91 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCE
Confidence 55678899999999999999999999999999999999842 249999999999995 3111223999999999999999
Q ss_pred eeecc---CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCc
Q 018576 84 ECSLD---GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 84 ~~~~~---~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~ 160 (353)
++..+ +|..+++|.+|+.++.|+.+.++.++++++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.+++
T Consensus 92 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~ 171 (364)
T 3p9c_A 92 TCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDP 171 (364)
T ss_dssp EEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCH
T ss_pred EEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCH
Confidence 98621 111147899999999988877777899998877778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeC
Q 018576 161 RFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240 (353)
Q Consensus 161 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~ 240 (353)
+..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|++++.+++.++|+++.+
T Consensus 172 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 251 (364)
T 3p9c_A 172 RFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGG 251 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeC
Confidence 99999999999988888888888887677789999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 241 d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|+|.+.++.............+++.|+....+|+.|
T Consensus 252 D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 331 (364)
T 3p9c_A 252 DMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRER 331 (364)
T ss_dssp CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred CcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccC
Confidence 99988887799999999999999999999999999999999999999988765433222223345677777544489999
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++|+++||+.+++.+..+..++||++|
T Consensus 332 t~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 332 YEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp BHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 999999999999999999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-55 Score=406.55 Aligned_cols=349 Identities=52% Similarity=0.892 Sum_probs=303.5
Q ss_pred CCccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhc-CCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 5 VDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKA-GPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
.+.++.+.+..+++++.+++.+++|++|+++|||+.|.+. ||++|.|++|||+++|..++.++..++||||+|++.|+|
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll 93 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVV 93 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCe
Confidence 3447889999999999999999999999999999999985 544689999999999832222234999999999999999
Q ss_pred eeec---cCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCc
Q 018576 84 ECSL---DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 84 ~~~~---~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~ 160 (353)
++.. ++|..+++|++|+.++.++.+.++.++++++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.+++
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~ 173 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDH 173 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCH
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCH
Confidence 9852 1111137899999999998887777999998887778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeC
Q 018576 161 RFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240 (353)
Q Consensus 161 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~ 240 (353)
+..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++++++.+
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 253 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGG 253 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEec
Confidence 99999999999988887888888887577789999999999999999999999999999999999999998899999999
Q ss_pred CCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 241 d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++.|+....+++.+
T Consensus 254 d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~r 333 (368)
T 3reo_A 254 DMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKER 333 (368)
T ss_dssp CTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCC
T ss_pred CCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccC
Confidence 99988887799999999999999999999999999999999999999988765433222233446777777654489999
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++|+++||+.+++.+..++.++||++|
T Consensus 334 t~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 334 TEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=369.34 Aligned_cols=323 Identities=25% Similarity=0.352 Sum_probs=286.2
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
.+....+++++.+++.+++|++|+++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 20 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~--- 88 (348)
T 3lst_A 20 LQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES--- 88 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec---
Confidence 4567789999999999999999999999999987 49999999999999 999999999999999999984
Q ss_pred CCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHH
Q 018576 90 SGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTA 169 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (353)
+++|++|+.++.+..+. +.++.+++.+...+.+++.|.+|.+++++|.++++..+|.++|+|+.++++....|+++
T Consensus 89 ---~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 164 (348)
T 3lst_A 89 ---DGRFALTDKGAALRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEG 164 (348)
T ss_dssp ---TTEEEECTTTGGGSTTS-SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHH
T ss_pred ---CCEEecCHHHHHHhcCC-CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHH
Confidence 68899999999885544 45788888876677788999999999999999999999988999999999999999999
Q ss_pred HHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-----CCCeeEEeCCCCC
Q 018576 170 MYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-----HPHIEHVAGDMFQ 244 (353)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d~~~ 244 (353)
|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .++|+++.+|+++
T Consensus 165 m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 243 (348)
T 3lst_A 165 METVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR 243 (348)
T ss_dssp HHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT
T ss_pred HHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCC
Confidence 99988888888999888 88889999999999999999999999999999999887763321 2579999999988
Q ss_pred CCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 245 SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 245 ~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
++|..|+|++.++||+|+++++.++|++++++|||||+|+|.|...++.... ......++.|+... +++.+|.++
T Consensus 244 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~-~~~~~t~~e 318 (348)
T 3lst_A 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAAR-TGQERTAAE 318 (348)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHTT-SCCCCBHHH
T ss_pred CCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhcC-CCcCCCHHH
Confidence 7774499999999999999999999999999999999999999987765322 22345677777654 899999999
Q ss_pred HHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 325 FMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++||+.+++.+..+..++|+++|
T Consensus 319 ~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 319 LEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred HHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 99999999999999999888899999875
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-50 Score=372.72 Aligned_cols=327 Identities=24% Similarity=0.463 Sum_probs=290.5
Q ss_pred CccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 6 DGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
+..+.....+|++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++
T Consensus 32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~ 103 (369)
T 3gwz_A 32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGA----HEQTLRRLLRLLATVGVFDD 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEE
Confidence 33455678889999999999999999999999999986 59999999999999 99999999999999999998
Q ss_pred eccCCCCccc-eecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHH
Q 018576 86 SLDGSGARRR-YSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNK 164 (353)
Q Consensus 86 ~~~~g~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~ 164 (353)
. ++++ |.+|+.++.+..+ ++.++.+++.+...+..++.|.+|.++++++.++++..+|.++|+|+.++++...
T Consensus 104 ~-----~~~~~y~~t~~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~ 177 (369)
T 3gwz_A 104 L-----GHDDLFAQNALSAVLLPD-PASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARE 177 (369)
T ss_dssp C-----SSTTEEECCHHHHTTSCC-TTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHH
T ss_pred e-----CCCceEecCHHHHHHhcC-CchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHH
Confidence 5 2577 9999999987544 4457888888776666889999999999999999999999889999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeE
Q 018576 165 HFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEH 237 (353)
Q Consensus 165 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~ 237 (353)
.|+++|...+......+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++|++
T Consensus 178 ~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~ 256 (369)
T 3gwz_A 178 LFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEI 256 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEE
Confidence 9999999988888888888888 88889999999999999999999999999999999888887764 368999
Q ss_pred EeCCCCCCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 238 VAGDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 238 ~~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
+.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++.... . ...+++.|+... +
T Consensus 257 ~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~-~ 330 (369)
T 3gwz_A 257 LPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDLLLLVLV-G 330 (369)
T ss_dssp EECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHH-S
T ss_pred eccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhHHHHhhc-C
Confidence 999999877755 99999999999999999999999999999999999999988764321 1 346677777664 8
Q ss_pred CcccCHHHHHHHHHhcCCceeeEee-eCCceEEEEEeC
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDL-VTGNFWVMEFYK 353 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~~ 353 (353)
++.+|.++|+++|+++||+++++.+ ..+..++||++|
T Consensus 331 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 331 GAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 9999999999999999999999999 678899999875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=365.75 Aligned_cols=316 Identities=24% Similarity=0.340 Sum_probs=278.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCc
Q 018576 14 AYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGAR 93 (353)
Q Consensus 14 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~ 93 (353)
..+++++.+++.+++|++|+++|||+.|.+ ||.|++|||+++|+ +++.++|||++|++.|++++. ++
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~-----~~ 73 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD-----GQ 73 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----TT
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec-----CC
Confidence 357899999999999999999999999987 59999999999999 999999999999999999986 26
Q ss_pred cceecccccccccCCCCCCChHHHHHHhcChhHH-HhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHh
Q 018576 94 RRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL-ESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYN 172 (353)
Q Consensus 94 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 172 (353)
++|.+|+.++.+..+ ++.++.+++.+...+..+ ..|.+|.+++++++++++..+|.++|+|+.++++....|++.|..
T Consensus 74 ~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 152 (332)
T 3i53_A 74 GVYGLTEFGEQLRDD-HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSH 152 (332)
T ss_dssp SBEEECTTGGGGSTT-CTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHH
T ss_pred CeEEcCHhHHHHhcC-CchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHH
Confidence 889999999998654 445788888765444556 889999999999999998889988999999999999999999998
Q ss_pred chhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCCC
Q 018576 173 HTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQS 245 (353)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~ 245 (353)
.+....+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++|+++.+|++++
T Consensus 153 ~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 231 (332)
T 3i53_A 153 HLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231 (332)
T ss_dssp HHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred hHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC
Confidence 87776667777777 77789999999999999999999999999999999888887764 27899999999987
Q ss_pred CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 246 VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 246 ~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
+|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++. .+ ...+++.|+... +++.+|.++
T Consensus 232 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~~e 303 (332)
T 3i53_A 232 LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSLAE 303 (332)
T ss_dssp CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCHHH
T ss_pred CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCHHH
Confidence 7755 99999999999999989999999999999999999999987664 11 235677776654 899999999
Q ss_pred HHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 325 FMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
|.++|+++||+.+++.+.++ .++||++|
T Consensus 304 ~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 304 LGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 99999999999999999988 99999875
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=361.83 Aligned_cols=343 Identities=44% Similarity=0.728 Sum_probs=274.6
Q ss_pred hHHHHHHH--HHHhhhHHHHHHHHHHHhChhhhhhhcC-CCCCCCHHHHHHhCCCC--CCCCcCcHHHHHHHHhccccee
Q 018576 10 DQSFAYAN--QLAMGTVLPMAMQAVYELGIFQIIDKAG-PGAKLSASDIAAQLPTK--NKDAPTMLDRILRLLASYSVVE 84 (353)
Q Consensus 10 ~~~~~~l~--~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~~~t~~ela~~~~~~--~~~~~~~l~r~L~~L~~~g~l~ 84 (353)
.++...|. +++.+++.+++|++|+++|||+.|.+.| |+++.|++|||+++|++ +|.+++.++||||+|++.|+|+
T Consensus 20 ~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~ 99 (372)
T 1fp1_D 20 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLT 99 (372)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceE
Confidence 34555666 9999999999999999999999999742 11229999999999982 3336789999999999999999
Q ss_pred eec---cCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcC-CCcchhccCCChhhhcccCc
Q 018576 85 CSL---DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEG-GIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 85 ~~~---~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~g~~~~~~~~~~~ 160 (353)
+.. ++|..++.|++|+.++.++.+....++++++.+...+.+++.|.+|+++++++ .++++..+|.++|+|+.+++
T Consensus 100 ~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~ 179 (372)
T 1fp1_D 100 STTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDK 179 (372)
T ss_dssp EEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCH
T ss_pred ecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCH
Confidence 851 11100368999999997765543257888988876778899999999999998 88898888988999999999
Q ss_pred hHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeC
Q 018576 161 RFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG 240 (353)
Q Consensus 161 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~ 240 (353)
+....|++.|...+......+++.++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++++++.+
T Consensus 180 ~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~ 259 (372)
T 1fp1_D 180 KMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGG 259 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEEC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeC
Confidence 99999999999888777788888886567789999999999999999999999999999999999999998889999999
Q ss_pred CCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 241 d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
|+++++|..|+|++.++||+|+++++.++|++++++|+|||+|+|.|...++....+........+++.|+... +++.+
T Consensus 260 d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~ 338 (372)
T 1fp1_D 260 DMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRER 338 (372)
T ss_dssp CTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCE
T ss_pred CcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhcc-CCccC
Confidence 99887776799999999999999988999999999999999999999987764322111112345666666533 68889
Q ss_pred CHHHHHHHHHhcCCceeeEeeeCCc-eEEEEEeC
Q 018576 321 TKHEFMTLATGAGFSGIRSDLVTGN-FWVMEFYK 353 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~~~~~-~~vi~~~~ 353 (353)
+.++|.++|+++||+.+++.+...+ .++||++|
T Consensus 339 t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 339 TEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 9999999999999999999985433 69999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=360.12 Aligned_cols=340 Identities=30% Similarity=0.481 Sum_probs=289.2
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+-.++...|++++.+++.+++|++++++|||+.|..++ +|.|++|||+++|+ ++.+++.++||||+|++.|+|++..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp CCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence 44566678899999999999999999999999999852 48999999999999 3334789999999999999999751
Q ss_pred ----c-CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcC--CCcchhccCCChhhhcccCc
Q 018576 88 ----D-GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEG--GIPFNRAHGMHAFEYGRVDP 160 (353)
Q Consensus 88 ----~-~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~g~~~~~~~~~~~ 160 (353)
+ +|..+++|++|+.++.++.+. +.++++++.+...+.++..|.+|++.+++| .++|+..+|.++|+|+.++|
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p 161 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGK-PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDS 161 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTS-TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCC-CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcCh
Confidence 0 111147899999998776554 358899998876778899999999999998 67888888888999999999
Q ss_pred hHHH--HHHHHHHhchhhhHHHHHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeE
Q 018576 161 RFNK--HFNTAMYNHTSLIMSNILESYK-GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEH 237 (353)
Q Consensus 161 ~~~~--~~~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~ 237 (353)
+..+ .|++.|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.+++++
T Consensus 162 ~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (358)
T 1zg3_A 162 ESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240 (358)
T ss_dssp GHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEE
T ss_pred hhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEE
Confidence 9999 99999988777665 7777773 267778999999999999999999999999999999999999988788999
Q ss_pred EeCCCCCCCCCCcEEEeccccccCCchHHHHHHHHHHHhCCC---CCEEEEEeeecCCCCCCccccccccccchhhhhhC
Q 018576 238 VAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPE---DGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN 314 (353)
Q Consensus 238 ~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (353)
+.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+|+|.|...++....+........+++.|+...
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 320 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF 320 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC
Confidence 999999877767999999999999999899999999999999 99999999987764332111123445677676644
Q ss_pred CCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 315 PGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 315 ~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+++.+|.++|.++|+++||+.+++.+.++..++||++|
T Consensus 321 -~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 -LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp -SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred -CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 78999999999999999999999999888899999986
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=357.31 Aligned_cols=319 Identities=24% Similarity=0.363 Sum_probs=281.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS 90 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g 90 (353)
.....+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++.
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~---- 74 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD---- 74 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----
Confidence 566889999999999999999999999999986 49999999999999 999999999999999999986
Q ss_pred CCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHH
Q 018576 91 GARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAM 170 (353)
Q Consensus 91 ~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 170 (353)
+++.|++|+.++.+. .++.++++++.+...+.+ ..|.+|.+++++++++++..+|.++|+|+.++++....|++.|
T Consensus 75 -~~~~y~~t~~s~~l~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (334)
T 2ip2_A 75 -TRDGYANTPTSHLLR--DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM 150 (334)
T ss_dssp -TTTEEEECHHHHTTS--SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCCeEecCHHHHHHh--CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH
Confidence 257899999998777 344578898887765555 8999999999999999988889889999999999999999999
Q ss_pred HhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCC
Q 018576 171 YNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMF 243 (353)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~ 243 (353)
..+......+++.++ +++ .+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|++
T Consensus 151 -~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 227 (334)
T 2ip2_A 151 -KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML 227 (334)
T ss_dssp -GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTT
T ss_pred -HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCC
Confidence 888777788888887 777 99999999999999999999999999999998788777652 68999999999
Q ss_pred CCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 244 QSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 244 ~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
+++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++.... .....+++.|+... +++.++.
T Consensus 228 ~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~ 302 (334)
T 2ip2_A 228 QEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHRTT 302 (334)
T ss_dssp TCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBH
T ss_pred CCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCCCH
Confidence 877765 99999999999999989999999999999999999999987654321 23345666666654 7889999
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
++|.++|+++||+.+++.+.++..++|+++|
T Consensus 303 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 303 EEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 9999999999999999999988899999875
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=356.53 Aligned_cols=336 Identities=29% Similarity=0.485 Sum_probs=287.2
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+-.++...+++++.+++.+++|++++++|||+.|..++ +|.|++|||+++|+ +|.+++.++|||++|++.|+|++.+
T Consensus 12 ~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~ 88 (352)
T 1fp2_A 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT 88 (352)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEec
Confidence 44466778999999999999999999999999999752 48999999999999 2223779999999999999999851
Q ss_pred cCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHh-cCCCcchhccCCChhhhcccCchHHHHH
Q 018576 88 DGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAIL-EGGIPFNRAHGMHAFEYGRVDPRFNKHF 166 (353)
Q Consensus 88 ~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 166 (353)
+| ++.|++|+.++.+..+. +.++++++.+...+.++..|.+|++.++ +|.++++..+|.++|+|+.++++....|
T Consensus 89 -~~--~~~y~~t~~s~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f 164 (352)
T 1fp2_A 89 -KE--EESYALTVASELLVRGS-DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSF 164 (352)
T ss_dssp -SS--SEEEEECHHHHTTSTTS-SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHH
T ss_pred -CC--CCeEeCCHHHHHHhCCC-CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHH
Confidence 11 47899999999777554 3578999988767788999999999999 8888998888989999999999999999
Q ss_pred HHHHHhchhhhHHHHHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC
Q 018576 167 NTAMYNHTSLIMSNILESYK-GFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS 245 (353)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~ 245 (353)
++.|...+....+. ++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++++++.+|++++
T Consensus 165 ~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~ 243 (352)
T 1fp2_A 165 NDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTS 243 (352)
T ss_dssp HHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTC
T ss_pred HHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCC
Confidence 99999887766666 67772 26778999999999999999999999999999999999999999888899999999887
Q ss_pred CCCCcEEEeccccccCCchHHHHHHHHHHHhCCC---CCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 246 VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPE---DGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 246 ~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
+|..|+|++.++||+|+++++.++|++++++|+| ||+++|.|...++....+........+++.|+. . +++.+|.
T Consensus 244 ~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~ 321 (352)
T 1fp2_A 244 IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNE 321 (352)
T ss_dssp CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEH
T ss_pred CCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCH
Confidence 7767999999999999999889999999999999 999999999877643221011223355666665 4 5888999
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
++|.++|+++||+.+++.+.++..++||++|
T Consensus 322 ~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 322 EEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999999888889999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-46 Score=344.59 Aligned_cols=324 Identities=16% Similarity=0.223 Sum_probs=259.9
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
-.++...+++++.+++.+++|++++++|||+.|..++ +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~-- 83 (363)
T 3dp7_A 12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE-- 83 (363)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec--
Confidence 3457788999999999999999999999999999832 59999999999999 999999999999999999875
Q ss_pred CCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccC--CChhhhcccCchHHHH-
Q 018576 89 GSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHG--MHAFEYGRVDPRFNKH- 165 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g--~~~~~~~~~~~~~~~~- 165 (353)
+++|++|+.++.++.+.. ...++.+ ..+..++.|.+|++++++|++++...+| .++|+++.++++..+.
T Consensus 84 ----~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 155 (363)
T 3dp7_A 84 ----EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKS 155 (363)
T ss_dssp ----TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHH
T ss_pred ----CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHH
Confidence 678999999987776543 2233333 2456788999999999999988888888 6799999988886653
Q ss_pred ---HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCe
Q 018576 166 ---FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHI 235 (353)
Q Consensus 166 ---~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv 235 (353)
|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.++++ ++|
T Consensus 156 ~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (363)
T 3dp7_A 156 WFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERI 231 (363)
T ss_dssp HHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGE
T ss_pred HHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccce
Confidence 5555544322 23444443 356789999999999999999999999999999998888877642 579
Q ss_pred eEEeCCCCCC---CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccc-cccccccchhh
Q 018576 236 EHVAGDMFQS---VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIE-SKSNSHIDVLM 310 (353)
Q Consensus 236 ~~~~~d~~~~---~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~-~~~~~~~~~~~ 310 (353)
+++.+|++++ +|+. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++....... .......++.+
T Consensus 232 ~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 311 (363)
T 3dp7_A 232 HGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTA 311 (363)
T ss_dssp EEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHH
T ss_pred EEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHh
Confidence 9999999983 6754 99999999999999999999999999999999999999987664321100 00111222233
Q ss_pred hhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC-CceEEEEEeC
Q 018576 311 MTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT-GNFWVMEFYK 353 (353)
Q Consensus 311 ~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~-~~~~vi~~~~ 353 (353)
+.. .+++.+|.++|.++|+++||+.+++.+.. .+.++|+.+|
T Consensus 312 ~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 312 MAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp SSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 332 36788999999999999999999998764 5699999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=342.50 Aligned_cols=325 Identities=21% Similarity=0.343 Sum_probs=277.6
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.+..+..+++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ ++..++|||++|++.|++++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~-- 82 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG-- 82 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC--
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe--
Confidence 46678899999999999999999999999999965 59999999999999 999999999999999999985
Q ss_pred CCCCcc--ceecccccccccCCCCCCChHHHHHHhcChhHH-HhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHH
Q 018576 89 GSGARR--RYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFL-ESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKH 165 (353)
Q Consensus 89 ~g~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (353)
.++ .|.+|+.++.+..+. +.++++++.+...+..+ ..|.++.+.+++|.++++..+|.++|+++..+++....
T Consensus 83 ---~~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (374)
T 1qzz_A 83 ---EKQGRPLRPTRLGMLLADGH-PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADS 158 (374)
T ss_dssp ---CC-CCCCEECTTGGGGSTTC-TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHH
T ss_pred ---CCCCeEEEEChHHHhhcCCC-cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHH
Confidence 145 899999988777554 45788888776445567 89999999999999998888898999999999999999
Q ss_pred HHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEE
Q 018576 166 FNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHV 238 (353)
Q Consensus 166 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~ 238 (353)
|++.|........+.+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++. ++++++
T Consensus 159 f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 237 (374)
T 1qzz_A 159 FDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVA 237 (374)
T ss_dssp HHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEE
Confidence 999998877776778888887 778899999999999999999999999999999998888877642 489999
Q ss_pred eCCCCCCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee--ecCCCCCCccccccccccchhhhhhCC
Q 018576 239 AGDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL--MLPEVPNTSIESKSNSHIDVLMMTQNP 315 (353)
Q Consensus 239 ~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (353)
.+|+++++|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|. ..++... ......+++.++...
T Consensus 238 ~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~- 312 (374)
T 1qzz_A 238 EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLTFM- 312 (374)
T ss_dssp ECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH-
T ss_pred eCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHHhC-
Confidence 99998877775 999999999999998888999999999999999999998 6654321 122345566666544
Q ss_pred CCcccCHHHHHHHHHhcCCceeeEeeeCCce-----EEEEEeC
Q 018576 316 GGKERTKHEFMTLATGAGFSGIRSDLVTGNF-----WVMEFYK 353 (353)
Q Consensus 316 ~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~-----~vi~~~~ 353 (353)
+++.++.++|.++|+++||+.+++.+.+... ++|+++|
T Consensus 313 ~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 313 GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 7889999999999999999999999988777 8998864
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=331.87 Aligned_cols=315 Identities=19% Similarity=0.251 Sum_probs=270.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCc
Q 018576 14 AYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGAR 93 (353)
Q Consensus 14 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~ 93 (353)
..+++++.+++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec------C
Confidence 678999999999999999999999999997 49999999999999 999999999999999999875 6
Q ss_pred cceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhc
Q 018576 94 RRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNH 173 (353)
Q Consensus 94 ~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 173 (353)
++|++|+.++.++...++.++++++.+...+..++.|.+|.++++++.++++ + |+++.++++....|.+.|...
T Consensus 74 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~ 147 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPM 147 (335)
T ss_dssp TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGG
T ss_pred CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHH
Confidence 8999999995444444446788888877566788999999999999887654 3 778888888899999999888
Q ss_pred hhhhHHHHHHhcccc--CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC
Q 018576 174 TSLIMSNILESYKGF--ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ 244 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~ 244 (353)
.......+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++++++.+|+++
T Consensus 148 ~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 148 MANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp GHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred HhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 8777778888887 6 77899999999999999999999999999999998888777653 479999999998
Q ss_pred -CCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCH
Q 018576 245 -SVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTK 322 (353)
Q Consensus 245 -~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 322 (353)
+++.+ |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++....+ ......++.|+...++++.++.
T Consensus 227 ~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~ 303 (335)
T 2r3s_A 227 VDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTF 303 (335)
T ss_dssp SCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCH
T ss_pred CCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCH
Confidence 67766 999999999999998899999999999999999999999876543221 2334556666665557889999
Q ss_pred HHHHHHHHhcCCceeeEeeeCCceEEEEEe
Q 018576 323 HEFMTLATGAGFSGIRSDLVTGNFWVMEFY 352 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~ 352 (353)
++|.++++++||+.+++.+.+++.++++.+
T Consensus 304 ~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 304 AEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred HHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 999999999999999999988777777654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=336.24 Aligned_cols=324 Identities=20% Similarity=0.319 Sum_probs=278.5
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
.....++++++.+++.+++|.+++++|||+.|.. +|.|++|||+++|+ ++..++|+|++|++.|+|++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~--- 85 (360)
T 1tw3_A 17 QIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED--- 85 (360)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec---
Confidence 3557888999999999999999999999999975 59999999999999 999999999999999999985
Q ss_pred CCCccceecccccccccCCCCCCChHHHHHHhcChh-HHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHH
Q 018576 90 SGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKV-FLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNT 168 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (353)
.+++|.+|+.++.+..+. +.++++++.+...+. .+..|.+|.+.+++|.++++..+|.++|+++..+++....|..
T Consensus 86 --~~g~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~ 162 (360)
T 1tw3_A 86 --APGEFVPTEVGELLADDH-PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDS 162 (360)
T ss_dssp --ETTEEEECTTGGGGSTTS-TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHH
T ss_pred --CCCeEEeCHHHHHHhcCC-chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHH
Confidence 257899999988777554 457888877654333 6788999999999999888888888899999889999999999
Q ss_pred HHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCC
Q 018576 169 AMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGD 241 (353)
Q Consensus 169 ~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d 241 (353)
.|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.++++ ++++++.+|
T Consensus 163 ~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 241 (360)
T 1tw3_A 163 LLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 241 (360)
T ss_dssp HHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 998887777778888887 778899999999999999999999999999999987788776542 489999999
Q ss_pred CCCCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee-cCCCCCCccccccccccchhhhhhCCCCcc
Q 018576 242 MFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM-LPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319 (353)
Q Consensus 242 ~~~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (353)
+++++|.. |+|++.++||+|+++++.++|++++++|+|||+++|.|.. .++.... .....+++.++... ++..
T Consensus 242 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~ 316 (360)
T 1tw3_A 242 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-GGAL 316 (360)
T ss_dssp TTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-SCCC
T ss_pred CCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-CCcC
Confidence 98877775 9999999999999988899999999999999999999988 5543211 22335566666544 7889
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeCCc-----eEEEEEeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVTGN-----FWVMEFYK 353 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~~~-----~~vi~~~~ 353 (353)
++.++|.++|+++||+++++.+.++. .++|+++|
T Consensus 317 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 317 RTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 99999999999999999999888765 88999875
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-44 Score=330.65 Aligned_cols=311 Identities=16% Similarity=0.278 Sum_probs=263.4
Q ss_pred hHHHHHHHHHHh-hhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 10 DQSFAYANQLAM-GTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 10 ~~~~~~l~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.+....+++++. +++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-- 97 (359)
T 1x19_A 28 LNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-- 97 (359)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee--
Confidence 456678888886 8999999999999999999987 49999999999999 999999999999999999986
Q ss_pred CCCCccceecccccccccCCCCC---CChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCch---H
Q 018576 89 GSGARRRYSLNSVSKYYVPNKDG---VSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPR---F 162 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~---~ 162 (353)
++.|++|+.+..++.+.++ .++++++.+. ...+++.|.+|.++++++.+ |+|+.++|+ .
T Consensus 98 ----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~~~ 162 (359)
T 1x19_A 98 ----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVTRE 162 (359)
T ss_dssp ----TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCSHH
T ss_pred ----CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhhHH
Confidence 4689999976655555544 5788888775 46788999999999998754 566777888 8
Q ss_pred HHHHHHHHHhchh-hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCC
Q 018576 163 NKHFNTAMYNHTS-LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPH 234 (353)
Q Consensus 163 ~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~r 234 (353)
...|...|...+. ...+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++
T Consensus 163 ~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~ 241 (359)
T 1x19_A 163 DNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADR 241 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCC
Confidence 8999999999887 77788888888 88889999999999999999999999999999999888887764 257
Q ss_pred eeEEeCCCCC-CCCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh
Q 018576 235 IEHVAGDMFQ-SVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ 313 (353)
Q Consensus 235 v~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (353)
++++.+|+++ +++.+|+|++.++||+|+++++.++|++++++|+|||+++|.|...++.. .+. ..... .++..
T Consensus 242 v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~---~~~~~--~~~~~ 315 (359)
T 1x19_A 242 MRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPN---FDYLS--HYILG 315 (359)
T ss_dssp EEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTT-SCC---HHHHH--HHGGG
T ss_pred EEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCC-Cch---HHHHH--HHHHh
Confidence 9999999998 66666999999999999998899999999999999999999999876541 111 11111 33332
Q ss_pred CCCCcc----cCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 314 NPGGKE----RTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 314 ~~~g~~----~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
..+++. ++.++|.++|+++||+.+++.+.+ ..++++++|
T Consensus 316 ~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 316 AGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp GGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred cCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 224666 899999999999999999999887 889999876
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=329.36 Aligned_cols=320 Identities=14% Similarity=0.220 Sum_probs=264.8
Q ss_pred CCCccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccce
Q 018576 4 IVDGERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l 83 (353)
..++..-+....+++++.+++.+++|++++++|||+.|.+ |.|++|||+++|+ +++.++|||++|++.|+|
T Consensus 16 ~~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll 86 (352)
T 3mcz_A 16 TEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGM----VEGKAAILLHALAALGLL 86 (352)
T ss_dssp CCSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCe
Confidence 3344444555669999999999999999999999999964 8999999999999 999999999999999999
Q ss_pred eeeccCCCCccceecccccccccCCCCCCChHHHHHHhcChhHHHhhhhhHHHHhcCCCc-chhccCCChhhhcccCchH
Q 018576 84 ECSLDGSGARRRYSLNSVSKYYVPNKDGVSLGPALQMIQDKVFLESWSHLKDAILEGGIP-FNRAHGMHAFEYGRVDPRF 162 (353)
Q Consensus 84 ~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~g~~~~~~~~~~~~~ 162 (353)
++. ++.|.+|+.+..++.+..+.+++.++.+. ...++.|.+|.+.+++|.+. |+. ..++..+++.
T Consensus 87 ~~~------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~ 152 (352)
T 3mcz_A 87 TKE------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRA 152 (352)
T ss_dssp EEE------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHH
T ss_pred Eec------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHH
Confidence 986 47899999998777777777888887654 45678999999999998753 222 1234678888
Q ss_pred HHHHHHHHHhchhhhHHHHHHhccccCC-CCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CC
Q 018576 163 NKHFNTAMYNHTSLIMSNILESYKGFAN-IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PH 234 (353)
Q Consensus 163 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~r 234 (353)
...|..+|...... +..+++.++ +.+ ..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. ++
T Consensus 153 ~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~ 230 (352)
T 3mcz_A 153 RDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGR 230 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCc
Confidence 89999999874433 347788887 766 899999999999999999999999999999998888776542 57
Q ss_pred eeEEeCCCCC-C--CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh
Q 018576 235 IEHVAGDMFQ-S--VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM 310 (353)
Q Consensus 235 v~~~~~d~~~-~--~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 310 (353)
++++.+|+++ + .+.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++....+ .....+++.|
T Consensus 231 v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~ 307 (352)
T 3mcz_A 231 VEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHM 307 (352)
T ss_dssp EEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHH
T ss_pred eEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHH
Confidence 9999999998 4 5665 999999999999999899999999999999999999999887653322 2334567777
Q ss_pred hhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 311 MTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 311 ~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+....+++.+|.++|.++|+++||++++.. .++.+++..+|
T Consensus 308 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 308 MVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred HhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 765557889999999999999999998843 35577777665
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=168.42 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=119.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i~~~~ 256 (353)
.+++.+|||||||+|.++..+++.+ |+++++++|+ +.|++.|+++ .+|+++++|+.+ +.+..|+|++.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3567899999999999999999986 6789999999 8888877642 579999999987 665569999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccc-ccchhhhhhC-------------CCCcccCH
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNS-HIDVLMMTQN-------------PGGKERTK 322 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~g~~~t~ 322 (353)
+||++++++..++|++++++|||||+|++.|...+.+.... ..... ..++...... ..-...|.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999988888999999999999999999998876542110 00000 0000000000 00123588
Q ss_pred HHHHHHHHhcCCceeeEee-eCCceEEEEEe
Q 018576 323 HEFMTLATGAGFSGIRSDL-VTGNFWVMEFY 352 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~ 352 (353)
+++.++|+++||+.++++. .-...+++.++
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 9999999999999998753 33444555443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=160.43 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=127.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC-cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-D~ 251 (353)
..+...++...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34445444234668999999999999999999999999999999 777776654 2489999999988 55544 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccch--------h-hh---hhCCCCcc
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDV--------L-MM---TQNPGGKE 319 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~--------~-~~---~~~~~g~~ 319 (353)
|++..++|++++.+..++|++++++|+|||++++.+...+........ ....+... . .. ........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 999999999998877789999999999999999999876543110000 00000000 0 00 00012345
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
++.++|.++|+++||+.+++.....+.+++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 6899999999999999999988777777665543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=155.96 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=119.9
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..++ .++. +|||||||+|.++..+++. |+.+++++|. +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 110 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN 110 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence 34455554 4444 9999999999999999998 8889999999 7777776553 579999999988 66654
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++ ...+|++++++|+|||++++.+...+.................+..........++.++|.+
T Consensus 111 ~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
T 3dlc_A 111 YADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQN 188 (219)
T ss_dssp CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHH
T ss_pred cccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHH
Confidence 99999999999865 46899999999999999999886543210000000000000000000000233457899999
Q ss_pred HHHhcCCceeeEeeeCCceEEEEE
Q 018576 328 LATGAGFSGIRSDLVTGNFWVMEF 351 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~~~~~vi~~ 351 (353)
+|+++||+.+++.....+.+++..
T Consensus 189 ~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 189 VLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHcCCCeEEEEecCCceEEEEe
Confidence 999999999999988777766543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=147.46 Aligned_cols=155 Identities=16% Similarity=0.187 Sum_probs=124.6
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 35566565 6778899999999999999999997 8889999999 7788777653 579999999987 66654
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++ ...+|++++++|+|||++++.+.......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 99999999999975 46899999999999999999987655431110 0122358899999
Q ss_pred HHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 328 LATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+++++||+.+++...+.....+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988877766666654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-19 Score=153.76 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=115.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~ 260 (353)
...+|||||||+|.++..+++..+ +++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++|.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 368999999999999999999877 8999998 7788776643 689999999988 66543 99999999777
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc---ccccccchh--------hhhhC-CC-------CcccC
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES---KSNSHIDVL--------MMTQN-PG-------GKERT 321 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~-~~-------g~~~t 321 (353)
+...+..++|++++++|+|||++++.+...+......... ....+.... ....+ .+ ....+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 7777788999999999999999999987532110000000 000000000 00000 00 01112
Q ss_pred HHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 322 KHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 322 ~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.+|.++|+++||+.+++...+...++|+++|
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred -hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 4899999999999999999988888998875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-18 Score=144.42 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=114.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCCCCCCC--cEEE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQSVPKG--DAIF 253 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~~~p~~--D~i~ 253 (353)
..+...+....+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. ++++++.+|+.+..+.+ |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555543456679999999999999999998 669999998 7788777653 67999999998754443 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCC-------cccCHHHHH
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGG-------KERTKHEFM 326 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~t~~~~~ 326 (353)
+.+++|++++++...+|++++++|+|||++++.+...+.......... ......... .+.+ ...+.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRT-LQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEE-CTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeee-cCCcchhhHhhcCCCHHHHH
Confidence 999999999887889999999999999999999987643211100000 000000000 0111 235899999
Q ss_pred HHHHhcCCceeeEeeeC
Q 018576 327 TLATGAGFSGIRSDLVT 343 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~~ 343 (353)
++|+++||++......+
T Consensus 190 ~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 190 ERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHTTEEEEEEEEET
T ss_pred HHHHHCCCEEEeeeccc
Confidence 99999999955444443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-18 Score=145.73 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=119.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCCCC-cEEEe
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVPKG-DAIFL 254 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~-D~i~~ 254 (353)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 456789999999999999999997 679999999 7778777653 489999999988 56544 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCHHHHHHHHHhcC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
..++|++++.+...+|++++++|+|||++++.++..+................+.. .........++.++|.++|+++|
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 192 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG 192 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTT
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCC
Confidence 99999999887777999999999999999999876543210000000000000000 00000112348899999999999
Q ss_pred CceeeEeeeCCceEEEEEeC
Q 018576 334 FSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 334 f~~v~~~~~~~~~~vi~~~~ 353 (353)
|+++.+. .....++++..|
T Consensus 193 f~v~~~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 193 FHVTFTR-LNHFVWVMEATK 211 (220)
T ss_dssp EEEEEEE-CSSSEEEEEEEE
T ss_pred CEEEEee-ccceEEEEeehh
Confidence 9866554 446777776543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=151.51 Aligned_cols=156 Identities=20% Similarity=0.301 Sum_probs=121.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCCC--
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~-- 249 (353)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345566565 6677899999999999999999987 679999999 7777766543 689999999988 66654
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++|++++++...+|++++++|+|||++++.+...+.... ........... . +...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~-~-~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKEN------WDDEFKEYVKQ-R-KYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGG------CCHHHHHHHHH-H-TCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCccc------chHHHHHHHhc-C-CCCCCCHHHHHHHH
Confidence 9999999999998778899999999999999999999987654111 11111111111 1 34467899999999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||+.+++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=151.47 Aligned_cols=158 Identities=15% Similarity=0.240 Sum_probs=118.7
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S 245 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~ 245 (353)
.......+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. +++.++.+|+.+ +
T Consensus 22 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 22 KGSDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 98 (260)
T ss_dssp -CCCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC
T ss_pred CHHHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC
Confidence 3334556677666 66788999999999999999999875 9999998 7788776542 579999999988 7
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCH
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTK 322 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~ 322 (353)
++.+ |+|++..++|++++. ..+|++++++|+|||++++.+...+..+ . ...+..... .........++.
T Consensus 99 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~ 170 (260)
T 1vl5_A 99 FTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSHHRAWKK 170 (260)
T ss_dssp SCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTCCCCCBH
T ss_pred CCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccccCCCCH
Confidence 7654 999999999999865 5999999999999999999988765431 0 111111111 111112455789
Q ss_pred HHHHHHHHhcCCceeeEeee
Q 018576 323 HEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~~~~ 342 (353)
++|.++|+++||+.+++...
T Consensus 171 ~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 171 SDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEEe
Confidence 99999999999998877654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=144.11 Aligned_cols=149 Identities=17% Similarity=0.286 Sum_probs=114.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAIF 253 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i~ 253 (353)
.+...++.++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |+|+
T Consensus 31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~ 106 (240)
T 3dli_A 31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVM 106 (240)
T ss_dssp HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEE
Confidence 34444443456789999999999999999997 568999999 7788888765 8999999876 45544 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+..++|++++++...+|++++++|+|||++++..+..... ....... ........++.++|.++++++|
T Consensus 107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~l~~~l~~aG 175 (240)
T 3dli_A 107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY--IDPTHKKPVHPETLKFILEYLG 175 (240)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT--TSTTCCSCCCHHHHHHHHHHHT
T ss_pred ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh--cCccccccCCHHHHHHHHHHCC
Confidence 9999999998888899999999999999999987643210 0111111 1011345678999999999999
Q ss_pred CceeeEeeeC
Q 018576 334 FSGIRSDLVT 343 (353)
Q Consensus 334 f~~v~~~~~~ 343 (353)
|+++++....
T Consensus 176 f~~~~~~~~~ 185 (240)
T 3dli_A 176 FRDVKIEFFE 185 (240)
T ss_dssp CEEEEEEEEC
T ss_pred CeEEEEEEec
Confidence 9998887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=148.97 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=117.6
Q ss_pred HHHHHhc---cccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CC
Q 018576 179 SNILESY---KGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SV 246 (353)
Q Consensus 179 ~~~~~~~---~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~ 246 (353)
..+++.+ ....+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|+.+ ++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 146 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence 4555555 126678899999999999999999987 469999999 7777776542 579999999988 66
Q ss_pred CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 247 PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 247 p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
+.+ |+|++..++|++++ ...+|++++++|+|||++++.++..+...... ....+.... . .....+.++
T Consensus 147 ~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~-~-~~~~~~~~~ 216 (297)
T 2o57_A 147 EDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS------SIQPILDRI-K-LHDMGSLGL 216 (297)
T ss_dssp CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG------GGHHHHHHH-T-CSSCCCHHH
T ss_pred CCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH------HHHHHHHHh-c-CCCCCCHHH
Confidence 654 99999999999987 57999999999999999999998765432111 111111111 1 233568999
Q ss_pred HHHHHHhcCCceeeEeee
Q 018576 325 FMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~ 342 (353)
|.++|+++||+++++...
T Consensus 217 ~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 217 YRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHCCCeEEEEEEC
Confidence 999999999999988765
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=149.47 Aligned_cols=164 Identities=16% Similarity=0.243 Sum_probs=123.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
...+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.++++ ++++++.+|+.+. +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 345666666 67788999999999999999999987 89999999 7788777642 3799999998754 444
Q ss_pred -cEEEeccccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc-----ccccccchhhhhhCCC
Q 018576 250 -DAIFLKWILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES-----KSNSHIDVLMMTQNPG 316 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 316 (353)
|+|++..++|++++ +....+|++++++|+|||++++.+...+......... ....+.++.....+++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999954 5678999999999999999999998765421000000 0000012222223457
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeeeCC
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLVTG 344 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~~~ 344 (353)
+..++.+++.++++++||+++++...+.
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 7888999999999999999998877643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=146.92 Aligned_cols=157 Identities=11% Similarity=0.145 Sum_probs=120.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 248 (353)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 345666666 6778899999999999999999987 689999999 6777766542 479999999988 6665
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
+ |+|++..++|++++. .++|++++++|+|||++++.+.......... .....+..... .+.+..++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGA----KKEAVDAFRAG-GGVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHH----HHHHHHHHHHH-HTCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChh----HHHHHHHHHhh-cCccCCCCHHHHH
Confidence 4 999999999998764 6999999999999999999998765421110 00111111111 1255678999999
Q ss_pred HHHHhcCCceeeEeeeC
Q 018576 327 TLATGAGFSGIRSDLVT 343 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~~ 343 (353)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999998887653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=146.93 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=120.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~- 249 (353)
..+++.++ ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV 130 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCCe
Confidence 45566665 66778999999999999999997775 49999999 7777766542 589999999865 3444
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCC-----CccccccccccchhhhhhCCCCcccCHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPN-----TSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
|+|++..++|++++++...+|++++++|||||++++.+...+.... .+.........++.....++++..++.++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 210 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 210 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence 9999999999997667789999999999999999999987654211 00000000111111112245677789999
Q ss_pred HHHHHHhcCCceeeEeeeC
Q 018576 325 FMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~ 343 (353)
|.++++++||+++++...+
T Consensus 211 ~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHhCCcEEEEEEeCc
Confidence 9999999999999887653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-18 Score=148.67 Aligned_cols=149 Identities=17% Similarity=0.307 Sum_probs=116.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCCC--c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPKG--D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~--D 250 (353)
..++..++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45556555 5667899999999999999999886 557999998 7777766543 579999999987 56544 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++.++||++++++..++|++++++|+|||++++.+....... ...+. ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHHHHHHH
Confidence 99999999999887889999999999999999999997543321 01110 11234578999999999
Q ss_pred hcCCceeeEeeeC
Q 018576 331 GAGFSGIRSDLVT 343 (353)
Q Consensus 331 ~aGf~~v~~~~~~ 343 (353)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999886653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=148.00 Aligned_cols=162 Identities=9% Similarity=0.061 Sum_probs=121.7
Q ss_pred HHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCC
Q 018576 170 MYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGD 241 (353)
Q Consensus 170 m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d 241 (353)
+..........+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4344444445566665535667899999999999999999986 579999999 7788776642 479999999
Q ss_pred CCC-CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCc
Q 018576 242 MFQ-SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGK 318 (353)
Q Consensus 242 ~~~-~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (353)
+.+ +++.+ |+|++..++|+++ ..++|++++++|+|||++++.+.......... ............ ..
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP-----SKWVSQINAHFE--CN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC-----CHHHHHHHHHHT--CC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch-----hHHHHHHHhhhc--CC
Confidence 988 66644 9999999999984 67999999999999999999998765532111 011111111111 23
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.++.++|.++++++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 678999999999999999988765
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-18 Score=142.63 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=114.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
+.+|||||||+|.++..+++. +.+++++|. +.+++.+++ .++++++.+|+.+ +.+.+ |+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999998 569999999 778887776 4789999999987 66544 9999999999998777
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC-C
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT-G 344 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~-~ 344 (353)
...+|++++++|+|||++++.+...+... .+ .. . ......++.++|.++|+++||+++++...+ .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~---~~---~--~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------PM---YH---P--VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------EE---CC---S--SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------hh---hc---h--hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 88999999999999999999887544310 00 00 0 012345789999999999999999887654 3
Q ss_pred ceEEEE
Q 018576 345 NFWVME 350 (353)
Q Consensus 345 ~~~vi~ 350 (353)
++..+.
T Consensus 186 p~~~l~ 191 (203)
T 3h2b_A 186 PHAYLT 191 (203)
T ss_dssp SEEEEE
T ss_pred cchhhh
Confidence 444443
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=147.41 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=115.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEecc-ccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFLKW-ILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~~~-~Lh~~~~ 263 (353)
++..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +||++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 356899999999999999999885 48999999 7788877653 689999999988 55444 9999998 9999864
Q ss_pred -hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc---------c-----------ccccchhhhhhCCC------
Q 018576 264 -EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK---------S-----------NSHIDVLMMTQNPG------ 316 (353)
Q Consensus 264 -~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~------ 316 (353)
++..++|++++++|+|||++++.+...+..-....... . .......+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 46779999999999999999997654443211100000 0 00001111100001
Q ss_pred -----CcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 317 -----GKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 317 -----g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.+.+|.++|.++|+++||+++++........++..+|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999876665555555543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-17 Score=142.63 Aligned_cols=151 Identities=12% Similarity=0.145 Sum_probs=114.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEe
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFL 254 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~ 254 (353)
..+.+.++ ..++.+|||||||+|.++..+++ |+.+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 56788999999999999999998 6789999999 7889999888899999999987 66644 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
.+++|++++ ..++|++++++|| ||++++.+...+..... . ....+...... . .....+.+++. +|+++||
T Consensus 101 ~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~-~---~~~~~~~~~~~-~-~~~~~~~~~~~-~l~~aGF 170 (261)
T 3ege_A 101 ILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRI-W---LYDYFPFLWED-A-LRFLPLDEQIN-LLQENTK 170 (261)
T ss_dssp ESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCC-G---GGGTCHHHHHH-H-HTSCCHHHHHH-HHHHHHC
T ss_pred cchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHH-H---HHHHHHHHhhh-h-hhhCCCHHHHH-HHHHcCC
Confidence 999999965 4699999999999 99999999864332111 0 00111100110 1 23345677888 9999999
Q ss_pred ceeeEeee
Q 018576 335 SGIRSDLV 342 (353)
Q Consensus 335 ~~v~~~~~ 342 (353)
+.+++...
T Consensus 171 ~~v~~~~~ 178 (261)
T 3ege_A 171 RRVEAIPF 178 (261)
T ss_dssp SEEEEEEC
T ss_pred CceeEEEe
Confidence 98887665
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=143.15 Aligned_cols=153 Identities=16% Similarity=0.292 Sum_probs=116.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~- 249 (353)
..+++.+. ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 44555565 77789999999999999999999875 8999998 7777776542 579999999987 66644
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hhhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++. ..+|++++++|+|||++++.+...+... . ...+.... ..........++.++|.+
T Consensus 88 fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (239)
T 1xxl_A 88 FDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEWQA 159 (239)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred EEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHHHH
Confidence 999999999999764 6899999999999999999998765431 0 11111111 111111245678999999
Q ss_pred HHHhcCCceeeEeee
Q 018576 328 LATGAGFSGIRSDLV 342 (353)
Q Consensus 328 ll~~aGf~~v~~~~~ 342 (353)
+|+++||+.+++...
T Consensus 160 ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 160 MFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCcEEEEEee
Confidence 999999998877654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=143.87 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=116.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..+....++.+|||||||+|.++..+++.+|. +++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 344555543566789999999999999999999986 9999999 7777766542 469999999977 66644
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|+++ ..++|++++++|+|||++++.+.......... .....+... .....+.++|.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHHH
Confidence 9999999999983 46899999999999999999997644322111 111222221 123568999999
Q ss_pred HHHhcCCceeeEeeeC
Q 018576 328 LATGAGFSGIRSDLVT 343 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~ 343 (353)
+|+++||+++++...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999887665
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=144.21 Aligned_cols=152 Identities=12% Similarity=0.065 Sum_probs=115.4
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
..++..+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 45566565 6778899999999999999999988 679999999 7788776542 579999999987 44334
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++..++|++++ ..++|++++++|||||++++.+......+.... ....+.. ......++.++|.++
T Consensus 104 fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~ 173 (256)
T 1nkv_A 104 CDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQACGV--SSTSDFLTLPGLVGA 173 (256)
T ss_dssp EEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHTTTC--SCGGGSCCHHHHHHH
T ss_pred CCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHH------HHHHHhc--ccccccCCHHHHHHH
Confidence 99999999999875 468999999999999999999987654322110 0000000 012245789999999
Q ss_pred HHhcCCceeeEeee
Q 018576 329 ATGAGFSGIRSDLV 342 (353)
Q Consensus 329 l~~aGf~~v~~~~~ 342 (353)
|+++||+.+++...
T Consensus 174 l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 174 FDDLGYDVVEMVLA 187 (256)
T ss_dssp HHTTTBCCCEEEEC
T ss_pred HHHCCCeeEEEEeC
Confidence 99999999887543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=144.73 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=116.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~- 249 (353)
.++..++...++.+|||||||+|.++..+++. |..+++++|+ +.+++.+++. ++++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443567789999999999999999998 8889999999 7777776542 679999999987 65544
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++..++|++ + ..++|++++++|+|||++++.+.......... .....+... .....+.+++.++
T Consensus 115 fD~i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPA------EINDFWMDA---YPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCEEHHHHHHH
T ss_pred EEEEEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChH------HHHHHHHHh---CCCCCCHHHHHHH
Confidence 999999999998 3 46899999999999999999998754332211 111222111 2345689999999
Q ss_pred HHhcCCceeeEeeeC
Q 018576 329 ATGAGFSGIRSDLVT 343 (353)
Q Consensus 329 l~~aGf~~v~~~~~~ 343 (353)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999887765
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=148.07 Aligned_cols=152 Identities=16% Similarity=0.251 Sum_probs=113.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56778999999999999999999999999999999 7777776542 579999999987 66544 99999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccch--hhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDV--LMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
+|++++. ..+|++++++|+|||++++.+.........+........... ..... .++..++..++.++|+++||+
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~aGf~ 191 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAY-MKGNSLVGRQIYPLLQESGFE 191 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHH-TTCCTTGGGGHHHHHHHTTCE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHCCCC
Confidence 9999875 489999999999999999998643221000000000011111 11111 245567788999999999999
Q ss_pred eeeEeee
Q 018576 336 GIRSDLV 342 (353)
Q Consensus 336 ~v~~~~~ 342 (353)
++++...
T Consensus 192 ~v~~~~~ 198 (276)
T 3mgg_A 192 KIRVEPR 198 (276)
T ss_dssp EEEEEEE
T ss_pred eEEEeeE
Confidence 9887654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-17 Score=146.18 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=120.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +|..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 345666665 6677899999999999999999987 569999999 7777776542 579999999865 3444
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc-c----cccccchhhhhhCCCCcccCHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES-K----SNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
|+|++..++|++++++..++|++++++|+|||++++.++..+......... . .....++.....++++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 999999999999877788999999999999999999998765421000000 0 0001111111223467778999
Q ss_pred HHHHHHHhcCCceeeEeee
Q 018576 324 EFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~ 342 (353)
++.++++++||+++++...
T Consensus 236 ~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHhCCCEEEEEEec
Confidence 9999999999999887664
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-17 Score=141.58 Aligned_cols=163 Identities=17% Similarity=0.166 Sum_probs=115.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEe-ccccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFL-KWILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~-~~~Lh~~~~ 263 (353)
.+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++|++.+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4568999999999999999999876 8999999 7888877654 679999999987 55444 99995 559998854
Q ss_pred -hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc---------c-----------ccccchhhhhhCCCC-----
Q 018576 264 -EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK---------S-----------NSHIDVLMMTQNPGG----- 317 (353)
Q Consensus 264 -~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~g----- 317 (353)
++..++|++++++|+|||++++.+...++......... . .....+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999998766544321100000 0 000011111100011
Q ss_pred ------cccCHHHHHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 318 ------KERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 318 ------~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+.+|.++|.++|+++||+++.+....+...++.++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777665555666776654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=139.13 Aligned_cols=141 Identities=9% Similarity=0.048 Sum_probs=107.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------------------CCCeeEEeC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------------------HPHIEHVAG 240 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~ 240 (353)
.++..+. ..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3444444 556789999999999999999997 569999999 778877653 257999999
Q ss_pred CCCC-CCCC--C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 241 DMFQ-SVPK--G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 241 d~~~-~~p~--~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
|+.+ +.+. . |+|++..++|++++++..+++++++++|||||+++++....+... . ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------~--------~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------L--------EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------S--------SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------c--------CCC
Confidence 9988 5442 3 999999999999877778899999999999999666554332110 0 001
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 112578999999998 9998776554
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=136.01 Aligned_cols=146 Identities=15% Similarity=0.166 Sum_probs=115.1
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCCCCCCC--cEEEecc
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQSVPKG--DAIFLKW 256 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~--D~i~~~~ 256 (353)
+++.++ ..+..+|||||||+|.++..+++... +++++|. +.+++.+++ .+++++..+| .+++.+ |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344444 66778999999999999999999874 9999998 777777765 4789999999 445543 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
++|++++ ...+|++++++|+|||++++.+.......... +....++.++|.++|+ ||++
T Consensus 84 ~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 9999865 46999999999999999999987654421110 0112368999999998 9999
Q ss_pred eeEeeeCCceEEEEEe
Q 018576 337 IRSDLVTGNFWVMEFY 352 (353)
Q Consensus 337 v~~~~~~~~~~vi~~~ 352 (353)
+++...+.....+.++
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999988766666554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.8e-17 Score=146.27 Aligned_cols=172 Identities=9% Similarity=0.081 Sum_probs=118.5
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCC-C
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQ-S 245 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~-~ 245 (353)
....++..++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++++|+.+ +
T Consensus 71 ~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3455666555 3 3349999999999999999997 578999999 7788877653 579999999988 5
Q ss_pred CCCC-cEEEec-cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC--ccc--------------cccc---c
Q 018576 246 VPKG-DAIFLK-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT--SIE--------------SKSN---S 304 (353)
Q Consensus 246 ~p~~-D~i~~~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~--------------~~~~---~ 304 (353)
.+.. |+|++. .++|++++++..++|++++++|+|||+|++.....+..... ... .... .
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 226 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE 226 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence 5555 988854 77888877778899999999999999999987654321000 000 0000 0
Q ss_pred ccchhhhh----------hCCCCcccCHHHHHHHHHhcCCceeeEeeeC------CceEEEEEe
Q 018576 305 HIDVLMMT----------QNPGGKERTKHEFMTLATGAGFSGIRSDLVT------GNFWVMEFY 352 (353)
Q Consensus 305 ~~~~~~~~----------~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~------~~~~vi~~~ 352 (353)
...+.... .....+.++.++|.++|+++||+++++.+.. ....+++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 00000000 0001124699999999999999999998875 234566553
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=146.87 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=113.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHH-HHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAIT-SKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..++ ...|+.+++++|+ +.+++.++++ ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999996 6789999999999 7777776542 459999999988 56644 9999999
Q ss_pred ccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc--------chhhhhhCCC--CcccCHHHH
Q 018576 257 ILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI--------DVLMMTQNPG--GKERTKHEF 325 (353)
Q Consensus 257 ~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--g~~~t~~~~ 325 (353)
++|++++.. ..++|++++++|+|||++++.+...+....... .+..... ...+...... ...++.++|
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999996554 457999999999999999998876554322110 0000000 0001111101 134789999
Q ss_pred HHHHHhcCCceeeEeeeC
Q 018576 326 MTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 326 ~~ll~~aGf~~v~~~~~~ 343 (353)
.++|+++||+++++....
T Consensus 275 ~~~l~~aGF~~v~~~~~~ 292 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDR 292 (305)
T ss_dssp HHHHHHTTCEEEEEECCT
T ss_pred HHHHHHCCCEEEEEEccc
Confidence 999999999999988654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-17 Score=143.02 Aligned_cols=138 Identities=15% Similarity=0.228 Sum_probs=110.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh 259 (353)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999887 568999998 7788776543 358899999876 55553 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
+++++....+|++++++|+|||++++.+...+.. . .++. ......++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-------~---~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-------V---ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-------E---EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc-------c---eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998878899999999999999999999876541 0 1110 11233468999999999999999988
Q ss_pred eeeC
Q 018576 340 DLVT 343 (353)
Q Consensus 340 ~~~~ 343 (353)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=137.45 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~ 261 (353)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 35679999999999999999998 569999999 7788877664 689999999988 66554 999999999998
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++. ..+|++++++|+|||++++.+......... . ..... ... ......++.+++.++++++||++++...
T Consensus 130 ~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~---~~~~~-~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKSDGYACIAILGPTAKPRE---N---SYPRL-YGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG---G---GGGGG-GTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh---h---hhhhh-ccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 654 589999999999999999998654332110 0 01110 110 1123457899999999999999998764
Q ss_pred e
Q 018576 342 V 342 (353)
Q Consensus 342 ~ 342 (353)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-17 Score=149.21 Aligned_cols=215 Identities=10% Similarity=-0.003 Sum_probs=140.4
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCCCCCChH
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKDGVSLG 115 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~~~~~~~ 115 (353)
++|..| . +|.|++|||+.+++ +++.+++||+.|++.|+++.. ++ |++|+.++.++.+.+..+..
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~------~~-~~lt~~~~~~l~~~~~~~~~ 110 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE------DG-VKLTEKGEELVAEYGIGKRY 110 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC------CC-EEECHHHHHHHHhcCccccc
Confidence 789999 5 38999999999999 999999999999999999874 23 99998876554432221111
Q ss_pred HHHH-Hhc-----ChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccC
Q 018576 116 PALQ-MIQ-----DKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFA 189 (353)
Q Consensus 116 ~~~~-~~~-----~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 189 (353)
+.+. ... ...+...|..+.+.++....+. ..++ +.+. .++ ....+.. .... .. ..
T Consensus 111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-~~~~----~~~~-~~~--~~~~~~l---------~~~~-~~-~~ 171 (373)
T 2qm3_A 111 DFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-HEFD----QAYV-TPE--TTVARVI---------LMHT-RG-DL 171 (373)
T ss_dssp C------------CGGGHHHHHHHHHHHTTCCCCC-GGGT----CCCB-CHH--HHHHHHH---------HHHH-TT-CS
T ss_pred cccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-hhcC----Ceec-CHH--HHHHHHH---------HHhh-cC-CC
Confidence 1100 000 0111123344555555332211 1111 1000 111 1111100 0111 11 23
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC----C-cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK----G-DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~----~-D~i~~~~~ 257 (353)
++.+||||| |+|.++..+++..|+.+++++|+ +.+++.++++ ++++++.+|+.+++|. . |+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 468999999 99999999999988889999999 7888877653 3799999999875542 3 99999987
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++.. ....++++++++|+|||++++.+..
T Consensus 251 ~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 7653 2579999999999999977666654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=139.67 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=107.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCCCCCCC--cEEEeccccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQSVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~~~~ 263 (353)
.++.+|||||||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|+.+..+.+ |+|++.++||++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4567999999999999999999876 7999998 7788777653 28999999997743433 99999999999976
Q ss_pred hHHHHHHHHHH-HhCCCCCEEEEEeeecCCCCCCcc--ccccccccch--hhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 264 EHCLKLLKNCY-KSVPEDGKVIVVELMLPEVPNTSI--ESKSNSHIDV--LMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 264 ~~~~~~L~~~~-~~L~pgG~l~i~e~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
. .++|++++ ++|+|||++++.++.......... .........+ .... ......++.++|.++|+++||++++
T Consensus 119 ~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 119 P--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp H--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred H--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccccc-ccccccCCHHHHHHHHHHCCCeEEE
Confidence 5 69999999 999999999998864322100000 0000000000 0001 1134567999999999999999988
Q ss_pred Eeee
Q 018576 339 SDLV 342 (353)
Q Consensus 339 ~~~~ 342 (353)
+...
T Consensus 196 ~~~~ 199 (250)
T 2p7i_A 196 RSGI 199 (250)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 7643
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-17 Score=137.51 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=109.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC-cEEEeccccccCCch
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDDE 264 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~ 264 (353)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.. +.+.. |+|++..+||+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999987 569999999 7788888766578889999877 52233 999999999999977
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC-CceeeEeee
Q 018576 265 HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG-FSGIRSDLV 342 (353)
Q Consensus 265 ~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG-f~~v~~~~~ 342 (353)
+...+|++++++|+|||++++.......... .... .....++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGR--------DKLA-------RYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--------CTTS-------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--------cccc-------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 8899999999999999999998654332100 0000 0123468999999999999 999987654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=148.55 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC--------------CCeeEEeCCCCC-------C
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH--------------PHIEHVAGDMFQ-------S 245 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~-------~ 245 (353)
.++.+|||||||+|.++..+++.+ |..+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999987 7899999999 7788777653 689999999986 4
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHH
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
++.+ |+|++..++|++++ ..++|++++++|||||+|++.+.......... . .......... .+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~--~~~~~~~~~~-~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEA----A--QQDPILYGEC-LGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHH----H--HHCHHHHHTT-CTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHh----H--hhhHHHhhcc-cccCCCHH
Confidence 4544 99999999999876 46999999999999999999998765321110 0 1111111111 34567889
Q ss_pred HHHHHHHhcCCceeeEee
Q 018576 324 EFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~ 341 (353)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999886654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=140.06 Aligned_cols=140 Identities=18% Similarity=0.232 Sum_probs=108.3
Q ss_pred CCCeEEEEcCCc---hHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCC------------CC--
Q 018576 190 NIKQLVDVGGNL---GVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQS------------VP-- 247 (353)
Q Consensus 190 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~------------~p-- 247 (353)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 888887764 36899999999762 22
Q ss_pred CCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 248 KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 248 ~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
..|+|++..+||++++++..++|++++++|+|||+|++.+...+. ... .....+....... ....++.+++.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~-~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENLG-EGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHHS-CCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcCC-CCccCCHHHHHH
Confidence 239999999999999877889999999999999999999987532 111 1111222221112 355689999999
Q ss_pred HHHhcCCceee
Q 018576 328 LATGAGFSGIR 338 (353)
Q Consensus 328 ll~~aGf~~v~ 338 (353)
+| .||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 5998765
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=135.46 Aligned_cols=143 Identities=16% Similarity=0.127 Sum_probs=103.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCC-CCCC-C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQ-SVPK-G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p~-~-D~i 252 (353)
..++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++. ++++++.+|+.. +.+. . |+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34578999999999999999999999899999999 7788777653 289999999965 4433 3 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH----HH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM----TL 328 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~----~l 328 (353)
++..++|++++++..++|++++++|+|||.+++.... +..... .......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~-~~~~~~------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l 178 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK-EYNFHY------GNLFEGNLRH-RDHRFEWTRKEFQTWAVKV 178 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG-GGGGCC------CCT-----GG-GCCTTSBCHHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch-hhhhhh------cccCcccccc-cCceeeecHHHHHHHHHHH
Confidence 9999999999888889999999999999966554432 111000 0000000000 0123346888888 78
Q ss_pred HHhcCCceee
Q 018576 329 ATGAGFSGIR 338 (353)
Q Consensus 329 l~~aGf~~v~ 338 (353)
++++||++..
T Consensus 179 ~~~~Gf~v~~ 188 (219)
T 3jwg_A 179 AEKYGYSVRF 188 (219)
T ss_dssp HHHHTEEEEE
T ss_pred HHHCCcEEEE
Confidence 8999997543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-17 Score=144.04 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=113.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 250 (353)
.+.+.+....++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +.++. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444433567889999999999999999999985 89999999 7777766542 379999999988 55555 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec-----C---CCCCCccccccccccchhh--hhhCCCCccc
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML-----P---EVPNTSIESKSNSHIDVLM--MTQNPGGKER 320 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~-----~---~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~ 320 (353)
+|++..++|++++. .++|++++++|+|||++++.++.. . ++...+.......+..+.. .... +....
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-GKDGN 168 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT-CCCTT
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhh-ccccc
Confidence 99999999999765 599999999999999999998761 1 0000000000111111111 1111 33445
Q ss_pred CHHHHHHHHHhcCCceeeEee
Q 018576 321 TKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+..++.++|+++||+.+++..
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEE
Confidence 677899999999999887743
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=138.60 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=106.3
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccccccC
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWILHDW 261 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~~ 261 (353)
.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999976 5678999999 7777776542 4599999999883343 4 999999999999
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
++++..++|++++++|+|||++++.+......... ....++.++|.++|+++||+++++..
T Consensus 146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~ 206 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVEE 206 (235)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEEe
Confidence 97788899999999999999999988654321100 11125789999999999999998876
Q ss_pred eC
Q 018576 342 VT 343 (353)
Q Consensus 342 ~~ 343 (353)
.+
T Consensus 207 ~~ 208 (235)
T 3lcc_A 207 NP 208 (235)
T ss_dssp CT
T ss_pred cC
Confidence 64
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=139.83 Aligned_cols=159 Identities=12% Similarity=0.089 Sum_probs=110.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAI 252 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i 252 (353)
.+...++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4445444 446789999999999999999998655 9999999 7788776653 689999999987 66544 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC--C---------CCCccccccccccc-----hhhhhhCCC
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE--V---------PNTSIESKSNSHID-----VLMMTQNPG 316 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~--~---------~~~~~~~~~~~~~~-----~~~~~~~~~ 316 (353)
++..++|++++ ..++|++++++|+|||++++....... . ............++ .........
T Consensus 113 ~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 99999999865 579999999999999999997543210 0 00000000000000 000000001
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
...+|.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 12249999999999999999988754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=137.09 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=103.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCC-CCCC-C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQ-SVPK-G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p~-~-D~i 252 (353)
..+..+|||||||+|.++..+++..|..+++++|. +.+++.+++. .+++++.+|+.. +.+. . |+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 44578999999999999999999999899999998 7777776542 279999999865 4432 3 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH----HH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM----TL 328 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~----~l 328 (353)
++..++|+++++...++|++++++|+|||.+++........ .+.......... ......++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV-------KFANLPAGKLRH-KDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH-------HTC------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch-------hhcccccccccc-cccccccCHHHHHHHHHHH
Confidence 99999999998888899999999999999776655421100 000000000000 0123346888888 88
Q ss_pred HHhcCCceee
Q 018576 329 ATGAGFSGIR 338 (353)
Q Consensus 329 l~~aGf~~v~ 338 (353)
++++||+++.
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-16 Score=135.05 Aligned_cols=159 Identities=12% Similarity=0.103 Sum_probs=110.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---CCeeEEeCCCCC-CCCCC--cEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQ-SVPKG--DAI 252 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~-~~p~~--D~i 252 (353)
.+...++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4455454 4567899999999999999999873 238999999 7777777643 479999999987 55543 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC--CCCCcccc--------cccccc-----chhhhhhCCCC
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE--VPNTSIES--------KSNSHI-----DVLMMTQNPGG 317 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~--~~~~~~~~--------~~~~~~-----~~~~~~~~~~g 317 (353)
++..++|++++ ..++|++++++|+|||++++.+..... .....+.. ...... ...........
T Consensus 112 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 99999999875 469999999999999999998753210 00000000 000000 00001000022
Q ss_pred cccCHHHHHHHHHhcCCceeeEeee
Q 018576 318 KERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 318 ~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
..+|.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3368999999999999999988654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-16 Score=137.72 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=113.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecch-H------HHhhCCCC-------CCeeEEeCC-C
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQP-H------VIEHAPLH-------PHIEHVAGD-M 242 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~------~~~~a~~~-------~rv~~~~~d-~ 242 (353)
..+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|++ . +++.++++ ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35566665 6778899999999999999999996 77899999994 3 66665442 579999998 4
Q ss_pred CC---CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC--
Q 018576 243 FQ---SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP-- 315 (353)
Q Consensus 243 ~~---~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 315 (353)
.. +++.+ |+|++..++|++++.. .+++.++++++|||++++.+...+..................+....+
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 33 34443 9999999999998764 478888888888999999998775532111000000000000100000
Q ss_pred --C-CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 316 --G-GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 316 --~-g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
+ ...++.++|.++++++||+++++...
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 1 23578999999999999999887665
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=139.87 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=112.0
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC-cEEEec
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG-DAIFLK 255 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~-D~i~~~ 255 (353)
.+++.+. ..++.+|||||||+|.++..+++ +..+++++|+ +.+++.+++. +++++..+|+.+ +.+.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56678999999999999999998 7889999999 7788877654 689999999987 55444 999999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh------hCCCCcccCHHHHHHHH
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT------QNPGGKERTKHEFMTLA 329 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~t~~~~~~ll 329 (353)
.++|++++. ..+|++++++|+|||++++........ .. ............ .......++.++|.++|
T Consensus 125 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI--KY---ILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT--HH---HHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch--HH---HHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 999998764 589999999999999999977643221 00 000000000000 00012345899999999
Q ss_pred HhcCCceeeEeee
Q 018576 330 TGAGFSGIRSDLV 342 (353)
Q Consensus 330 ~~aGf~~v~~~~~ 342 (353)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999999876654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=140.06 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=111.9
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C-CCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S-VPK 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~-~p~ 248 (353)
..++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555554 23679999999999999999998 679999999 7788777653 679999999987 3 444
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh-------hCCCCcc
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT-------QNPGGKE 319 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~ 319 (353)
+ |+|++..++|++++. .++|++++++|+|||++++.+......... ............. .......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 999999999999765 689999999999999999988753221000 0000000000000 0012345
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
++.++|.++|+++||+++++....
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 789999999999999999887654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=138.97 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=109.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCC-CCCCC--cEEEe
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQ-SVPKG--DAIFL 254 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~i~~ 254 (353)
.++..++ ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+ + +.+ |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 4566565 56778999999999999999999999999999999 778887765 3789999999987 5 443 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccc---cccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSN---SHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
..++|++++ ..++|++++++|+|||++++.++.....+......... .+..............++.++|.++|++
T Consensus 102 ~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (259)
T 2p35_A 102 NAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSP 179 (259)
T ss_dssp ESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGG
T ss_pred eCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHh
Confidence 999999865 46899999999999999999886432110000000000 0000000000002345789999999999
Q ss_pred cCCce
Q 018576 332 AGFSG 336 (353)
Q Consensus 332 aGf~~ 336 (353)
+||++
T Consensus 180 aGf~v 184 (259)
T 2p35_A 180 KSSRV 184 (259)
T ss_dssp GEEEE
T ss_pred cCCce
Confidence 99974
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-16 Score=132.79 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=107.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCC-CCCCC--cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.. +++.+ |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45789999999999999999998 679999998 6677665431 258999999987 66544 9999
Q ss_pred eccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC--------------CCCc
Q 018576 254 LKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN--------------PGGK 318 (353)
Q Consensus 254 ~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~ 318 (353)
+..++|++++.+ ..++|++++++|+|||++++.+......... . .......+...... ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 999999997643 5689999999999999999999765332100 0 00000000000000 0013
Q ss_pred ccCHHHHHHHHHhcCCceeeEeee
Q 018576 319 ERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 319 ~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.++.++|.++|+++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 578999999999999999887643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=144.06 Aligned_cols=145 Identities=14% Similarity=0.215 Sum_probs=104.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------------------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------------------------------------ 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 232 (353)
.+.+|||||||+|.++..+++.+|..+++++|+ +.+++.|+++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 578999999999999999999999999999999 7777766432
Q ss_pred ----------------------------CCeeEEeCCCCCCC------CC-C-cEEEeccccccC----CchHHHHHHHH
Q 018576 233 ----------------------------PHIEHVAGDMFQSV------PK-G-DAIFLKWILHDW----DDEHCLKLLKN 272 (353)
Q Consensus 233 ----------------------------~rv~~~~~d~~~~~------p~-~-D~i~~~~~Lh~~----~~~~~~~~L~~ 272 (353)
.+|+|+.+|+.... +. . |+|++..+++++ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 47999999998622 33 3 999999999655 66678899999
Q ss_pred HHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh--cCCceeeEeee
Q 018576 273 CYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG--AGFSGIRSDLV 342 (353)
Q Consensus 273 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~--aGf~~v~~~~~ 342 (353)
++++|+|||+|++.......... ....... ..... .......+++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~------~~~~~~~-~~~~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGK------RKTLTET-IYKNY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHT------TTTSCHH-HHHHH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhh------hhcccHH-HHhhh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999985432211000 0000000 00000 1123447899999999 99998887654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=133.67 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC-----CCCC--cE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS-----VPKG--DA 251 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-----~p~~--D~ 251 (353)
.++..+. ...+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4455554 445689999999999999999988 669999999 78888888778888888887542 2222 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC-----CCCcccCHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN-----PGGKERTKHEFM 326 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~t~~~~~ 326 (353)
|++.+++| +.+ ...+|++++++|+|||++++.+............. .+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQD--IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQD---GWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSC--CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSC---EEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhh--HHHHHHHHHHHhCCCeEEEEEecCccccCcccccc---ccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 544 46999999999999999999987654322111000 01100000000 011346899999
Q ss_pred HHHHhcCCceeeEee
Q 018576 327 TLATGAGFSGIRSDL 341 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~ 341 (353)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998875
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=125.76 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=107.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEEe
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIFL 254 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~~ 254 (353)
.++..+ .++..+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 444444 346789999999999999999987 569999999 7777777653 679999999987 66543 99999
Q ss_pred c-cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 255 K-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 255 ~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
. .++|+++++....+|++++++|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999887778899999999999999999865321 1256889999999999
Q ss_pred CceeeEeee
Q 018576 334 FSGIRSDLV 342 (353)
Q Consensus 334 f~~v~~~~~ 342 (353)
|++++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999877543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=126.43 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=109.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~-D 250 (353)
.+.+.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444455 455679999999999999999987 679999999 7777776542 479999999987 55444 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++..++|++++++..++|++++++|+|||++++++...+...... ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999877788999999999999999999887654421100 01223467889999998
Q ss_pred hcCCceeeEee
Q 018576 331 GAGFSGIRSDL 341 (353)
Q Consensus 331 ~aGf~~v~~~~ 341 (353)
+ |++++...
T Consensus 164 ~--f~~~~~~~ 172 (199)
T 2xvm_A 164 G--WERVKYNE 172 (199)
T ss_dssp T--SEEEEEEC
T ss_pred C--CeEEEecc
Confidence 6 99887654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=135.06 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=104.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556789999999999999999987 578999998 777776653 2689999999987 66554 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC---CCcccCHHHHHHHHHhcCCc
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP---GGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~t~~~~~~ll~~aGf~ 335 (353)
|++++ ...+|++++++|+|||++++. ...++. . ........+..+......+ .....+.+++.++|+++||+
T Consensus 115 ~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAEA-S-PEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEECC-C-HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCCc-c-HHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 99875 468999999999999999988 221110 0 0000000011111111011 11345788999999999999
Q ss_pred eeeEee
Q 018576 336 GIRSDL 341 (353)
Q Consensus 336 ~v~~~~ 341 (353)
++.+..
T Consensus 190 ~~~~~~ 195 (263)
T 2yqz_A 190 PRTREV 195 (263)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 776543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=128.81 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=102.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEec
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLK 255 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~ 255 (353)
..++..+....+..+|||||||+|.++..+. .+++++|.+.. ++++..+|+.+ +++.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455544434556899999999999988772 68999998433 67889999987 66554 999999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.++|+ . +...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 3 357999999999999999999875310 12688999999999999
Q ss_pred eeeEeeeCCceEEEEEeC
Q 018576 336 GIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 336 ~v~~~~~~~~~~vi~~~~ 353 (353)
+++.........++.++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 988776666666666654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=130.21 Aligned_cols=137 Identities=17% Similarity=0.142 Sum_probs=102.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchHH
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEHC 266 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~~ 266 (353)
+.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +++.+ |+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 789999999999999988764 99998 7788877765 79999999877 66543 999999999998754
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 267 LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 267 ~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.++|++++++|+|||++++.+...... ......... ...........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESF-----LGREYEKNK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHHHTT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccH-----HHHHHHHHh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 689999999999999999988643211 000000000 0000011234579999999999999999887654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-16 Score=134.95 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecc-cccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKW-ILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~-~Lh~ 260 (353)
+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +||+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 468999999 7788777653 279999999987 55544 9999998 9999
Q ss_pred CCc-hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 WDD-EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ~~~-~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+++ ++..++|++++++|+|||++++...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 843 6678999999999999999998443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=131.91 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.++++++++++++|+.+ +++++ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45799999999999999999875 48999999 7899999999999999999988 78765 99999999997753
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
.+++++++++|||||+|+++....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 4789999999999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-16 Score=134.03 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=107.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---CCCeeEEeCCCCC-CCCC-------CcEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---HPHIEHVAGDMFQ-SVPK-------GDAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~-------~D~i~~~ 255 (353)
..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++ ..+++++++|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 35668999999999999999999987 8999998 777877654 2589999999987 3322 3899999
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccc----ccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES----KSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
.++|++++++..++|++++++|+|||++++.+...+......... .........+.. ......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHHC--
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHHh--
Confidence 999999977789999999999999999999998654310000000 000000000000 0112246899999999
Q ss_pred cCCceeeEee
Q 018576 332 AGFSGIRSDL 341 (353)
Q Consensus 332 aGf~~v~~~~ 341 (353)
+||+++....
T Consensus 209 aGf~~~~~~~ 218 (245)
T 3ggd_A 209 PDFEILSQGE 218 (245)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEeccc
Confidence 9999887543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=129.23 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecc-cccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKW-ILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~-~Lh~ 260 (353)
+..+|||||||+|.++..+++. .+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNY 109 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence 4589999999999999999887 79999999 7788777643 579999999987 55544 9999986 9998
Q ss_pred C-CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 W-DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~-~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ +.++..++|++++++|+|||++++.-
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 8 45667899999999999999998743
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.5e-16 Score=130.64 Aligned_cols=150 Identities=8% Similarity=-0.029 Sum_probs=106.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~~~L 258 (353)
..+..+|||||||+|.++..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 345689999999999985555544 4679999999 7788776643 579999999987 66544 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC-CCcccCHHHHHHHHHhcCCcee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP-GGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~t~~~~~~ll~~aGf~~v 337 (353)
|+++.++..++|++++++|+|||++++.+...++.............+.. .....+ ....++.+++.++|+++||...
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 178 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQ-LERGEKVIHSYVSLEEADKYFKDMKVLFK 178 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEE-CC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhcccccee-ccCCCceeEEecCHHHHHHHHhhcCceee
Confidence 99987778899999999999999999999876543211100000000000 000000 1245689999999999998765
Q ss_pred eE
Q 018576 338 RS 339 (353)
Q Consensus 338 ~~ 339 (353)
+.
T Consensus 179 ~~ 180 (209)
T 2p8j_A 179 ED 180 (209)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=130.59 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=109.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC---CCCCC--cEE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ---SVPKG--DAI 252 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~~--D~i 252 (353)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|. +.+++.+++.. .++..+|+.+ +++.+ |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 45689999999999999999998 4 89999999 77788776543 3788888865 34433 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcc--ccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSI--ESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
++..++|++++. ..+|++++++|+|||++++..+.......... ...+.. ....... ......++.++|.++|+
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~ 173 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTY-TEYGLLD-KTHIRFFTFNEMLRMFL 173 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCC-BSSSTTB-TTCCCCCCHHHHHHHHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCcee-ccCCCCC-cceEEEecHHHHHHHHH
Confidence 999999998765 59999999999999999998764322100000 000000 0000000 00224578999999999
Q ss_pred hcCCceeeEeeeC
Q 018576 331 GAGFSGIRSDLVT 343 (353)
Q Consensus 331 ~aGf~~v~~~~~~ 343 (353)
++||+++++....
T Consensus 174 ~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 174 KAGYSISKVDRVY 186 (230)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCeEEEEEecc
Confidence 9999998887653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-15 Score=134.60 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCchHHHH----HHHHHCCCCeE--EEecc-hHHHhhCCCC-------CCeeE--EeCCCCC-C------
Q 018576 189 ANIKQLVDVGGNLGVTLQ----AITSKYPYIKG--INFDQ-PHVIEHAPLH-------PHIEH--VAGDMFQ-S------ 245 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~rv~~--~~~d~~~-~------ 245 (353)
.++.+|||||||+|.++. .++.++|+.++ +++|. ++|++.++++ +++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 345799999999997654 45566788854 99998 7788766532 34444 4555433 2
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhC-CCCcccCH
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQN-PGGKERTK 322 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~ 322 (353)
++.+ |+|++.++||+++|. .++|++++++|||||++++.+..... .. .. .+......... .....++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~----~~-~~--~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS----GW-DK--LWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS----HH-HH--HHHHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCCc----cH-HH--HHHHHHHhccCCCcccCCCH
Confidence 2333 999999999999875 58999999999999999999754211 00 00 01111000000 01235689
Q ss_pred HHHHHHHHhcCCceeeE
Q 018576 323 HEFMTLATGAGFSGIRS 339 (353)
Q Consensus 323 ~~~~~ll~~aGf~~v~~ 339 (353)
++|.++|+++||+.+..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998763
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=128.09 Aligned_cols=132 Identities=8% Similarity=-0.082 Sum_probs=102.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------------------CCCeeEEeCCCCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------------------HPHIEHVAGDMFQ 244 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~ 244 (353)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 45689999999999999999987 569999999 777776632 2579999999998
Q ss_pred -CCC--CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCccc
Q 018576 245 -SVP--KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKER 320 (353)
Q Consensus 245 -~~p--~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 320 (353)
+.+ .. |+|++..+||++++++..+++++++++|||||+++++....+... .. . .....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~~------g-~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------HA------G-PPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------CC------C-SSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------CC------C-CCCCC
Confidence 543 33 999999999999887788999999999999999987766543210 00 0 01125
Q ss_pred CHHHHHHHHHhcCCceeeEee
Q 018576 321 TKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 321 t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+.+++.++|+. +|+++....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 78999999987 698876654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=133.79 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=101.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCC-CCCC------C--
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQ-SVPK------G-- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~p~------~-- 249 (353)
.++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ .++++++++|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 778877754 4689999999987 5544 4
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhh-CCCCcc--cCHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQ-NPGGKE--RTKHEFM 326 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~--~t~~~~~ 326 (353)
|+|++..++|++ + ..++|++++++|+|||+|++.+...+.....+. ....+.-..... ..+... ...+.+.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~p~~~~~~ 188 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYPE---FDDLMIEVPYGKQGLGPYWEQPGRSRLR 188 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGG---GTTHHHHHHHCTTTTGGGSCTTHHHHHH
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcHH---HHHHHHHhccCcccccchhhchhhHHHH
Confidence 999999999998 3 579999999999999999996654322111110 111111111000 001111 3456678
Q ss_pred HHHHhcCCc
Q 018576 327 TLATGAGFS 335 (353)
Q Consensus 327 ~ll~~aGf~ 335 (353)
++++++||.
T Consensus 189 ~~l~~~gfp 197 (299)
T 3g5t_A 189 NMLKDSHLD 197 (299)
T ss_dssp TTTTTCCCC
T ss_pred HhhhccCCC
Confidence 999999994
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=133.43 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=84.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCC-C---CCCC--c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQ-S---VPKG--D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~-~---~p~~--D 250 (353)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++.+..+|+.+ + ++.+ |
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 445789999999999999999998 449999999 7788777531 578899999887 5 4544 9
Q ss_pred EEEec-cccccCCc-----hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 251 AIFLK-WILHDWDD-----EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 251 ~i~~~-~~Lh~~~~-----~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+|++. +++|++++ ++..++|++++++|+|||++++..+.
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99998 99999988 66789999999999999999988753
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-15 Score=132.76 Aligned_cols=153 Identities=12% Similarity=0.007 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CC-CCC--cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SV-PKG--DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~-p~~--D~i~~~~ 256 (353)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56789999999999999998876 5569999999 7777766542 468999999987 65 343 9999999
Q ss_pred cccc--CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCC--------CCccc----------cc-cccccchhhhhhC-
Q 018576 257 ILHD--WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVP--------NTSIE----------SK-SNSHIDVLMMTQN- 314 (353)
Q Consensus 257 ~Lh~--~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~--------~~~~~----------~~-~~~~~~~~~~~~~- 314 (353)
++|+ .+.++..++|++++++|+|||++++..+...... ..... .. ......+......
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9998 5566788999999999999999999876432100 00000 00 0000000000000
Q ss_pred -CCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 315 -PGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 315 -~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
.....++.++|.++|+++||+++++...
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0123468999999999999999988664
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=128.61 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C------------------------------
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P------------------------------ 233 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------ 233 (353)
.++.+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4568999999999999999888765 58999999 6777766431 1
Q ss_pred -Ce-eEEeCCCCC--CCCC---C--cEEEeccccccCCc--hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccc
Q 018576 234 -HI-EHVAGDMFQ--SVPK---G--DAIFLKWILHDWDD--EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS 302 (353)
Q Consensus 234 -rv-~~~~~d~~~--~~p~---~--D~i~~~~~Lh~~~~--~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~ 302 (353)
++ +++.+|+.+ +.+. + |+|++..+||+++. ++..++|++++++|+|||+|++.+...... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------~ 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY--------Y 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------E
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce--------E
Confidence 17 899999987 2233 3 99999999995432 357899999999999999999998543210 0
Q ss_pred ccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 303 NSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
...+.. . .....+.++|.++|+++||+++++....
T Consensus 206 -~~~~~~----~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 -MIGEQK----F-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EETTEE----E-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EcCCcc----c-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 0 1224578999999999999998877653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=137.10 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=108.3
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCC-----C-CCCC-
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMF-----Q-SVPK- 248 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~-----~-~~p~- 248 (353)
....+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+......+. . +++.
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3445666666 667789999999999999999986 459999999 7788888765 3333332221 1 2222
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
. |+|++.++||++++ ...+|++++++|+|||++++..+..... .....+.... ......++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------~~~~~~~~~~-~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDI---------VAKTSFDQIF-DEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHH---------HHHTCGGGCS-TTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHh---------hhhcchhhhh-hhhhhcCCHHHHHH
Confidence 3 99999999999975 5799999999999999999976543210 0000000000 12345679999999
Q ss_pred HHHhcCCceeeEeeeC
Q 018576 328 LATGAGFSGIRSDLVT 343 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~ 343 (353)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999888765
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-14 Score=122.19 Aligned_cols=141 Identities=19% Similarity=0.240 Sum_probs=101.8
Q ss_pred CCCeEEEEcCCc--hHHHHHHHH-HCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---C--C---CC-c
Q 018576 190 NIKQLVDVGGNL--GVTLQAITS-KYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---V--P---KG-D 250 (353)
Q Consensus 190 ~~~~vLDvG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~--p---~~-D 250 (353)
+..+|||||||+ +.++..+++ ..|+.+++++|. |.|++.++++ .+++++++|+.++ + | .. |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457999999997 445555554 579999999999 8899988752 3699999999872 1 1 11 3
Q ss_pred -----EEEeccccccCCchH-HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 251 -----AIFLKWILHDWDDEH-CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 251 -----~i~~~~~Lh~~~~~~-~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
+|+++.+||++++.+ ...+|++++++|+|||+|++.+.+.+..+. ......+..... ......||.++
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~-g~p~~~rs~~e 231 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAAR-NMPMRLRTHAE 231 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHT-TCCCCCCCHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhc-CCCCccCCHHH
Confidence 789999999999866 579999999999999999999987543210 011111211111 11235689999
Q ss_pred HHHHHHhcCCceee
Q 018576 325 FMTLATGAGFSGIR 338 (353)
Q Consensus 325 ~~~ll~~aGf~~v~ 338 (353)
+.++|. ||+.++
T Consensus 232 i~~~f~--Glelve 243 (277)
T 3giw_A 232 AEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTT--TSEECT
T ss_pred HHHHhC--CCcccC
Confidence 999994 998654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-13 Score=118.53 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=84.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~ 251 (353)
.++.... ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 4444443 455689999999999999999986 569999999 7788777642 469999999987 55555 99
Q ss_pred EEec-cccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 252 IFLK-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 252 i~~~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|++. ..+|+++.++..++|++++++|+|||.+++..+
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 9986 456777777788999999999999999987543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-15 Score=130.68 Aligned_cols=140 Identities=11% Similarity=-0.039 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------------------------------
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------------------------------- 232 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------------------- 232 (353)
..++.+|||||||+|.++..++... ..+++++|. +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3456899999999998766655442 127999999 7778765431
Q ss_pred -CCee-EEeCCCCCC--CC---C-C-cEEEeccccccCC--chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc
Q 018576 233 -PHIE-HVAGDMFQS--VP---K-G-DAIFLKWILHDWD--DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301 (353)
Q Consensus 233 -~rv~-~~~~d~~~~--~p---~-~-D~i~~~~~Lh~~~--~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 301 (353)
.++. ++.+|+.+. ++ . . |+|+++++||+.. .++..++|++++++|||||+|++.+......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------- 203 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 203 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------
Confidence 1133 889998873 22 2 2 9999999999853 2456799999999999999999997643210
Q ss_pred cccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 302 SNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
. ...-.. . ....++.++|.++|+++||+++++...
T Consensus 204 ~--~~g~~~---~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 Y--MVGKRE---F-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp E--EETTEE---E-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--eeCCeE---e-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 000000 0 112358999999999999999887654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-13 Score=111.19 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCC--cEEEeccccccCCch--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKG--DAIFLKWILHDWDDE-- 264 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~~~~~-- 264 (353)
++.+|||||||+|.++..+++.. +++++|+ +.+++. .++++++.+|+.++.+.+ |+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 45699999999999999999987 9999999 777777 567999999998866643 999999998865543
Q ss_pred -----HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 265 -----HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 265 -----~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
....+++++.+.+ |||++++.+... ...+++.++++++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 3457899999999 999999977421 13567889999999998877
Q ss_pred eeeC
Q 018576 340 DLVT 343 (353)
Q Consensus 340 ~~~~ 343 (353)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 6553
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-15 Score=131.70 Aligned_cols=138 Identities=11% Similarity=0.032 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C-------------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P------------------------------- 233 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------- 233 (353)
++.+|||||||+|.+. .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999943 3444445569999999 7787755431 0
Q ss_pred -CeeEEeCCCCC--C-----CCCC--cEEEeccccccCCch--HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc
Q 018576 234 -HIEHVAGDMFQ--S-----VPKG--DAIFLKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301 (353)
Q Consensus 234 -rv~~~~~d~~~--~-----~p~~--D~i~~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 301 (353)
.++++.+|+.+ + ++.+ |+|++.++||+++.. +..++|++++++|||||+|++.+.....
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~--------- 220 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES--------- 220 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC---------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc---------
Confidence 14566668876 2 2233 999999999985533 5789999999999999999998754221
Q ss_pred cccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 302 SNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
+....+.. . ....++.++|.++|+++||+++++...
T Consensus 221 ~~~~~~~~----~-~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 221 WYLAGEAR----L-TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp EEEETTEE----E-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eEEcCCee----e-eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00000000 0 122468999999999999999877654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=118.95 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=99.4
Q ss_pred eEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEeccccccCCc
Q 018576 193 QLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 193 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~ 263 (353)
+|||||||+|.++..+++. +.+++++|. +.+++.+++. .++.++.+|+.+ +++.+ |+|++.. ++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCH
Confidence 9999999999999999986 569999999 7778777653 379999999987 66543 9999853 34566
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
++..++|++++++|+|||++++.+....... ...... ......++.+++.++|+ ||+++++...
T Consensus 108 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------YNTGGP------KDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------GTSCCS------SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccc-------CCCCCC------CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 6788999999999999999999887643310 000000 00123578999999998 9999876554
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.9e-14 Score=119.32 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=96.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhh----CCC------CCCeeEEeCCCCC-CCCCC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEH----APL------HPHIEHVAGDMFQ-SVPKG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~rv~~~~~d~~~-~~p~~-D~i~~ 254 (353)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 55678999999999999999999999999999999 665553 222 2589999999988 65544 66653
Q ss_pred cc---ccc--cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 255 KW---ILH--DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 255 ~~---~Lh--~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
.. .+| ++++. ..+|++++++|||||++++........... ...... .........+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV---------PEVGEH--PEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC---------GGGTTC--CCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc---------cccccC--CccchHHHHHHHHHHH
Confidence 22 221 33322 589999999999999999954322111000 000000 0011122345688899
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||++.++....
T Consensus 172 ~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 172 AEAGWKLADCRYLE 185 (218)
T ss_dssp HHTTEEEEEEEEEC
T ss_pred HHcCCCceeeeccc
Confidence 99999998876653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=129.50 Aligned_cols=113 Identities=14% Similarity=0.244 Sum_probs=91.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------------CCCeeEEeCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------------HPHIEHVAGD 241 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d 241 (353)
+..+++.+. ..++.+|||||||+|..+..++..++..+++|+|+ +.+++.|++ .++|+++++|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 345666666 77889999999999999999999888777999999 556655542 2689999999
Q ss_pred CCC-CCC----CCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCC
Q 018576 242 MFQ-SVP----KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVP 294 (353)
Q Consensus 242 ~~~-~~p----~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~ 294 (353)
+.+ +++ ..|+|+++++++. ++..+.|++++++|||||+|++.|.+.+.+.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAFG---PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTCC---HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEcccccC---chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 553 3499999887742 5567889999999999999999999887654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-15 Score=126.11 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=83.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCCCCCC--cEEEecccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQSVPKG--DAIFLKWILHD 260 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~ 260 (353)
..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+..+.+ |+|++.+++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4567899999999999999999885 48999999 777776654 367999999998833443 99999999999
Q ss_pred CCc-hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 261 WDD-EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 261 ~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+++ +...++|++++++|+|||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 45668999999999999999997764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=125.48 Aligned_cols=140 Identities=13% Similarity=0.126 Sum_probs=106.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DA 251 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~ 251 (353)
.+++.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 3444444 346789999999999999999998 569999999 7777766542 279999999987 44444 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
|++..++|+++++....+|++++++|+|||+++++.....+....+ ......++.+++.++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC
Confidence 9999999999988889999999999999999988777654321110 001234567788888854
Q ss_pred cCCceeeEe
Q 018576 332 AGFSGIRSD 340 (353)
Q Consensus 332 aGf~~v~~~ 340 (353)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8877664
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=115.10 Aligned_cols=120 Identities=10% Similarity=0.161 Sum_probs=97.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC--CC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP--KG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p--~~- 249 (353)
.++..+. ..++.+|||||||+|.++..+++..|..+++++|. +.+++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4455555 66778999999999999999999999999999999 7788777652 689999999976433 23
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++...++ ...+++++++++|+|||++++..... .+.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHHH
Confidence 9999998876 24689999999999999999865421 1355788899
Q ss_pred HhcCC
Q 018576 330 TGAGF 334 (353)
Q Consensus 330 ~~aGf 334 (353)
+++||
T Consensus 156 ~~~g~ 160 (204)
T 3e05_A 156 EDHGY 160 (204)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 99998
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-14 Score=118.63 Aligned_cols=130 Identities=15% Similarity=0.048 Sum_probs=105.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
.+..+|||||||+|.++..+++ .+..+++++|. +.+++.++++ .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999876 57779999999 7777777652 34999999998754444 99999988764
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
...++++++++|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999765321 35678899999999999998
Q ss_pred eeCCceEEEEEeC
Q 018576 341 LVTGNFWVMEFYK 353 (353)
Q Consensus 341 ~~~~~~~vi~~~~ 353 (353)
......+++.-.|
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8888888776543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=117.55 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=99.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhh----CCCCCCeeEEeCCCCCC-----CCCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEH----APLHPHIEHVAGDMFQS-----VPKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~rv~~~~~d~~~~-----~p~~-D~i~~~~ 256 (353)
+.+..+|||||||+|.++..+++.+|..+++++|. +.+++. ++..+++.++.+|+..+ .+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55678999999999999999999998889999998 666643 44457899999998762 2233 9988
Q ss_pred ccccCCch-HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 257 ILHDWDDE-HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 257 ~Lh~~~~~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
|++++. ....+|+++++.|+|||++++. ......... .. ......+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~---------~~---------~~~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVT---------KD---------PKEIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSS---------SC---------HHHHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCC---------CC---------HHHhhHHHHH-HHHHCCCE
Confidence 444433 3467899999999999999997 221111000 00 0011246777 89999999
Q ss_pred eeeEeeeCCc---eEEEEEe
Q 018576 336 GIRSDLVTGN---FWVMEFY 352 (353)
Q Consensus 336 ~v~~~~~~~~---~~vi~~~ 352 (353)
.+++.+.... +.++.++
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEE
Confidence 9988877543 5555544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-14 Score=120.52 Aligned_cols=145 Identities=10% Similarity=0.048 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-H-HHhhC---CCC------CCeeEEeCCCCCCCCC--CcEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-H-VIEHA---PLH------PHIEHVAGDMFQSVPK--GDAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a---~~~------~rv~~~~~d~~~~~p~--~D~i~~~ 255 (353)
.++.+|||||||+|.++..+++..|+.+++++|++ + +++.| +++ ++++++.+|+.+ +|. .|.|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence 45679999999999999999999999999999994 4 44443 543 579999999876 233 2555555
Q ss_pred cccccCCch------HHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 256 WILHDWDDE------HCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 256 ~~Lh~~~~~------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
.+.+.|+.. ....+|++++++|||||++++............ . .... .. .+.......+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~---~--~~~~---~~-~~~~~~~~~~el~~~l 172 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAE---I--KKRG---LP-LLSKAYFLSEQYKAEL 172 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhch---h--hhcC---CC-CCChhhcchHHHHHHH
Confidence 444434321 114689999999999999999544322210000 0 0000 00 0011111223599999
Q ss_pred HhcCCceeeEeeeC
Q 018576 330 TGAGFSGIRSDLVT 343 (353)
Q Consensus 330 ~~aGf~~v~~~~~~ 343 (353)
+++||++..+...+
T Consensus 173 ~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 173 SNSGFRIDDVKELD 186 (225)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHcCCCeeeeeecC
Confidence 99999988876554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-13 Score=118.51 Aligned_cols=142 Identities=14% Similarity=0.120 Sum_probs=106.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~- 249 (353)
..+++.++ .+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.++.+. .
T Consensus 100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~f 177 (276)
T 2b3t_A 100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQF 177 (276)
T ss_dssp HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCE
T ss_pred HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCc
Confidence 34444443 3467999999999999999999999999999999 7777776643 4799999999886543 3
Q ss_pred cEEEeccc-------------cccCCc----------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc
Q 018576 250 DAIFLKWI-------------LHDWDD----------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306 (353)
Q Consensus 250 D~i~~~~~-------------Lh~~~~----------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (353)
|+|+++.. +++.+. ....++++++.+.|+|||++++...
T Consensus 178 D~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------------ 239 (276)
T 2b3t_A 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------------ 239 (276)
T ss_dssp EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------------
T ss_pred cEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------------
Confidence 99999843 333221 3457899999999999999998521
Q ss_pred chhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee-eCCceEEEEEe
Q 018576 307 DVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL-VTGNFWVMEFY 352 (353)
Q Consensus 307 ~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~-~~~~~~vi~~~ 352 (353)
..+.+++.++++++||+.+++.. ..+...++.++
T Consensus 240 ------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 ------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 02367889999999999887765 44555555554
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=117.96 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=98.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCC-eEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYI-KGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIF 253 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~ 253 (353)
.++..+. .+..+|||||||+|.++..+ +. +++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 26789999999999998887 45 8999999 7788777654 689999999987 66654 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcC
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAG 333 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 333 (353)
+..++|++++ ..++|++++++|+|||++++.++..... . ..........-.........+|.++++++|+ |
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 101 LFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSP----W-AALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSH----H-HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCc----H-HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999875 4699999999999999999988753221 0 0000000000000000234579999999998 7
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=120.98 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCchH----HHHHHHHHCC----CCeEEEecc-hHHHhhCCCC----------------------------
Q 018576 190 NIKQLVDVGGNLGV----TLQAITSKYP----YIKGINFDQ-PHVIEHAPLH---------------------------- 232 (353)
Q Consensus 190 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 232 (353)
+..+|+|+|||||. .++.+++.+| +.+++++|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999999 7788776532
Q ss_pred ---------CCeeEEeCCCCC-CCC--CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 233 ---------PHIEHVAGDMFQ-SVP--KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 233 ---------~rv~~~~~d~~~-~~p--~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+|.|..+|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 268999999998 565 33 999999999999988788999999999999999987
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=123.69 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----C-------CeeEEeCCCCC---------CCC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----P-------HIEHVAGDMFQ---------SVP 247 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-------rv~~~~~d~~~---------~~p 247 (353)
.+.+|||||||+|..+..+++. ...+++|+|+ +.+++.|+++ . +++|.+.|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999877766654 3468999999 7889888753 1 25677887732 234
Q ss_pred CC--cEEEeccccccC-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-c-----------ccccccccc----ch
Q 018576 248 KG--DAIFLKWILHDW-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT-S-----------IESKSNSHI----DV 308 (353)
Q Consensus 248 ~~--D~i~~~~~Lh~~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-~-----------~~~~~~~~~----~~ 308 (353)
.+ |+|++.+++|+. ..++..++|++++++|||||++++..+....-... . ....+.... +.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 999999999974 44456799999999999999999887632110000 0 000000000 00
Q ss_pred hhhhhCCCC-------cccCHHHHHHHHHhcCCceeeEeee
Q 018576 309 LMMTQNPGG-------KERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 309 ~~~~~~~~g-------~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
. ....+.+ ...+.+++.++++++||+.+.....
T Consensus 207 ~-~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 I-VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp E-EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred c-ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0 0000111 2357799999999999999887653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-14 Score=126.40 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC---CCCCC--cEEEe---
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ---SVPKG--DAIFL--- 254 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~i~~--- 254 (353)
.++.+|||||||+|..+..+++..|. +++++|+ +.+++.|++. .+++++.+|... +++.+ |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45789999999999999999887764 8999999 8888887652 468888888754 34543 77653
Q ss_pred --ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhc
Q 018576 255 --KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGA 332 (353)
Q Consensus 255 --~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 332 (353)
...++++ .+...++++++++|||||+|++.+....... .....+ .-.....+.+...|.++
T Consensus 138 ~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchhh-------hhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 5555554 3457999999999999999988654321100 000000 01112345677788899
Q ss_pred CCceeeE
Q 018576 333 GFSGIRS 339 (353)
Q Consensus 333 Gf~~v~~ 339 (353)
||+...+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9987544
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-13 Score=111.53 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=108.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C--CeeEEeCCCCCCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P--HIEHVAGDMFQSVPK- 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--rv~~~~~d~~~~~p~- 248 (353)
+.+++.+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. + +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34556565 567789999999999999999988 779999998 7777766542 3 499999999885544
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
. |+|++...+|+ ..+....+++++++.|+|||++++...... ...++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHH
Confidence 3 99999988874 345677999999999999999999875321 1235667
Q ss_pred HHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 328 LATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 328 ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
.+++. |..+++.....+..++..+|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77777 67777777777777777665
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=112.22 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=81.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC---
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK--- 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--- 248 (353)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|. +.+++.+++. +++ ++.+|..+.++.
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3445555 56678999999999999999999999999999999 6677776542 378 888988764442
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
. |+|++..++|+ ..++++++++|+|||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 3 99999999986 4789999999999999998764
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=122.15 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------------CCeeEEeCCCCC-C----CC--C
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------------PHIEHVAGDMFQ-S----VP--K 248 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~rv~~~~~d~~~-~----~p--~ 248 (353)
++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++++|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 5689999999999999999884 6779999999 7777766542 368999999987 4 42 2
Q ss_pred -C-cEEEeccccccC--CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 249 -G-DAIFLKWILHDW--DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~--~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
. |+|++.+++|+. +.++...+|++++++|+|||++++..+.
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3 999999999986 3355779999999999999999998763
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-13 Score=130.74 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=88.6
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC------------CCCeeEEeCCCCC-C
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL------------HPHIEHVAGDMFQ-S 245 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~rv~~~~~d~~~-~ 245 (353)
+++.+. ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ .++++++.+|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 334333 3467899999999999999999998 5679999999 778877754 2579999999988 5
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
.+.+ |+|++..++|+++++....++++++++|+|| .++|..+.
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 5543 9999999999999888889999999999999 77777654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-14 Score=119.01 Aligned_cols=143 Identities=13% Similarity=0.023 Sum_probs=92.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCC-----
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVP----- 247 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p----- 247 (353)
..+++.+....++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.++++
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34555554225678999999999999999999999999999999 7788888764 168888888877444
Q ss_pred -CC-cEEEeccccccC------CchHH------------------HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccc
Q 018576 248 -KG-DAIFLKWILHDW------DDEHC------------------LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESK 301 (353)
Q Consensus 248 -~~-D~i~~~~~Lh~~------~~~~~------------------~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~ 301 (353)
.. |+|+++..++.. +.... ..++++++++|+|||++++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence 23 999996554432 22211 688999999999999966655321
Q ss_pred cccccchhhhhhCCCCcccCHHHHHHHHH--hcCCceeeEeeeCC-ceEEEE
Q 018576 302 SNSHIDVLMMTQNPGGKERTKHEFMTLAT--GAGFSGIRSDLVTG-NFWVME 350 (353)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~--~aGf~~v~~~~~~~-~~~vi~ 350 (353)
...+++.++++ +.||..+++..... ...++.
T Consensus 168 ------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~ 201 (215)
T 4dzr_A 168 ------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIA 201 (215)
T ss_dssp ------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEE
T ss_pred ------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEE
Confidence 12456778888 89998887776543 334443
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-13 Score=119.15 Aligned_cols=108 Identities=10% Similarity=0.069 Sum_probs=82.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-C------CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-S------VPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~------~p~~ 249 (353)
...++..++ ..++.+|||||||+|.++..++++ ..+++++|. +.+++.++++..-.++..++.+ + .+..
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 345666665 677889999999999999999987 468999999 7788877653111122223222 1 1223
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|+++.++...++++++++| |||++++....
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 9999999999999888899999999999 99999987653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-14 Score=121.40 Aligned_cols=100 Identities=11% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC---CCCCC--cEEEe-cc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ---SVPKG--DAIFL-KW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~i~~-~~ 256 (353)
.+..+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999966443 48999999 7787776542 569999999865 35544 99999 55
Q ss_pred c--cccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 257 I--LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 257 ~--Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
. .+.+.......++++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 5 33444445568899999999999999998764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=110.44 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC--cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG--DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~--D~i~~~~~ 257 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + ++.+ |+|++.+.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457999999999999999999999999999999 7777776542 689999999987 4 5543 99998866
Q ss_pred cccCCch------HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 258 LHDWDDE------HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 258 Lh~~~~~------~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+..... ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 5322111 12579999999999999998854
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-12 Score=108.80 Aligned_cols=96 Identities=15% Similarity=0.143 Sum_probs=75.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH----HHhhCCCCCCeeEEeCCCCCC-----CCCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH----VIEHAPLHPHIEHVAGDMFQS-----VPKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~-----~p~~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..+++..++.+++++|. +. +.+.+++..++.++.+|+..+ +++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988779999999 54 345555556899999998763 2333 999987
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+.+ ..+...++++++++|||||++++.-
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 322 2334567999999999999999984
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-13 Score=113.16 Aligned_cols=136 Identities=12% Similarity=0.082 Sum_probs=96.3
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhC----CCCCCeeEEeCCCCCC--CC--C-C-cE
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHA----PLHPHIEHVAGDMFQS--VP--K-G-DA 251 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~~--~p--~-~-D~ 251 (353)
.++ ++++.+|||+|||+|.++..+++.. |+-+++++|. +.+++.+ ++..++..+.+|...+ .+ . . |+
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 344 6788999999999999999999975 8899999998 7776544 4457899999988762 22 2 2 88
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHh
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATG 331 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 331 (353)
|++....| .+...+++++++.|||||+++|.......+ .. . ... ...++-.+.|++
T Consensus 151 Vf~d~~~~----~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~----~-p~~-~~~~~ev~~L~~ 206 (233)
T 4df3_A 151 LYADVAQP----EQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VT----T-EPS-EVYKREIKTLMD 206 (233)
T ss_dssp EEECCCCT----THHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HH----T-CCC-HHHHHHHHHHHH
T ss_pred EEEeccCC----hhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CC----C-ChH-HHHHHHHHHHHH
Confidence 87643322 335689999999999999999875432111 00 0 000 112334567889
Q ss_pred cCCceeeEeeeCC
Q 018576 332 AGFSGIRSDLVTG 344 (353)
Q Consensus 332 aGf~~v~~~~~~~ 344 (353)
+||+.++...+.+
T Consensus 207 ~GF~l~e~i~L~p 219 (233)
T 4df3_A 207 GGLEIKDVVHLDP 219 (233)
T ss_dssp TTCCEEEEEECTT
T ss_pred CCCEEEEEEccCC
Confidence 9999998877643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-12 Score=106.01 Aligned_cols=121 Identities=16% Similarity=0.164 Sum_probs=93.2
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C-CeeEEeCCCCCCCC---CC
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P-HIEHVAGDMFQSVP---KG 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~~~p---~~ 249 (353)
++..+. ..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++. + +++++.+|+.+..+ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 444455 667789999999999999999998 789999999 7788776642 3 89999999987332 23
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++...+ + .. ++++++++|+|||++++..... .+..++.+++
T Consensus 124 D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l 167 (204)
T 3njr_A 124 EAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQLH 167 (204)
T ss_dssp SEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHHH
Confidence 999987754 1 24 8999999999999999865421 1245677889
Q ss_pred HhcCCceeeEe
Q 018576 330 TGAGFSGIRSD 340 (353)
Q Consensus 330 ~~aGf~~v~~~ 340 (353)
++.||++.++.
T Consensus 168 ~~~g~~i~~i~ 178 (204)
T 3njr_A 168 ARHGGQLLRID 178 (204)
T ss_dssp HHHCSEEEEEE
T ss_pred HhCCCcEEEEE
Confidence 99998876653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-13 Score=114.33 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG--DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~ 260 (353)
.+..+|||||||+|.++..+++..+. +++++|. +.+++.+++ .++++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45689999999999999999998655 8999998 677766654 2689999999987 66644 99999999876
Q ss_pred CC-------------chHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 261 WD-------------DEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 261 ~~-------------~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+. .....++|++++++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 54 3456799999999999999999988653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-12 Score=107.32 Aligned_cols=140 Identities=14% Similarity=0.074 Sum_probs=96.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHH----hhCCCCCCeeEEeCCCCCC-----CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVI----EHAPLHPHIEHVAGDMFQS-----VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~----~~a~~~~rv~~~~~d~~~~-----~p~~-D~i~~~ 255 (353)
..+..+|||+|||+|.++..+++.+ |..+++++|. +.++ +.+++.++++++.+|+.++ .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999986 6689999998 5444 3444457899999999872 2334 999976
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.. .......++++++++|+|||++++. ......... . .....+.+++.++ .++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~---------~---------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVT---------K---------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTT---------S---------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCC---------C---------ChhhhhHHHHHHH-Hhh-ce
Confidence 44 1233446699999999999999998 321110000 0 0012235677776 777 99
Q ss_pred eeeEeeeCCc---eEEEEEe
Q 018576 336 GIRSDLVTGN---FWVMEFY 352 (353)
Q Consensus 336 ~v~~~~~~~~---~~vi~~~ 352 (353)
.++......+ ...+.++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eeeEeccCcccCCCEEEEEE
Confidence 9988877544 5555544
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-13 Score=117.36 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=93.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~- 249 (353)
.++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.++++.+
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 667789999999999999999998 78899999999 777765543 257999999998866653
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
|+|++ ++++. .++|+++.++|+|||++++...... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99998 33433 4889999999999999999774210 13456677
Q ss_pred HHhcCCceeeEee
Q 018576 329 ATGAGFSGIRSDL 341 (353)
Q Consensus 329 l~~aGf~~v~~~~ 341 (353)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7788888776654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-13 Score=115.10 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCC--CCC-CC--cEEEeccccccC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQ--SVP-KG--DAIFLKWILHDW 261 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~--~~p-~~--D~i~~~~~Lh~~ 261 (353)
.++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .+ |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 45689999999999999999998 579999999 778887765 4789999999965 444 43 9999871
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+...+|++++++|+|||+++.. +...+.+++.++++++||+.+++..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 1347799999999999999900 0012345788899999998877654
Q ss_pred e
Q 018576 342 V 342 (353)
Q Consensus 342 ~ 342 (353)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=113.89 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=97.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---C--CeeEEeCCCCCCCCC-C-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---P--HIEHVAGDMFQSVPK-G-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~ 260 (353)
.++.+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ . .+++..+|+.+.++. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4568999999999999999988755 9999999 7777766542 1 288999998765543 3 9999875544
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
....+++++++.|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 356899999999999999999765321 25688999999999999988
Q ss_pred eeCCceEE
Q 018576 341 LVTGNFWV 348 (353)
Q Consensus 341 ~~~~~~~v 348 (353)
..+...++
T Consensus 243 ~~~~W~~l 250 (254)
T 2nxc_A 243 AEGEWVLL 250 (254)
T ss_dssp EETTEEEE
T ss_pred ccCCeEEE
Confidence 77655543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-12 Score=110.43 Aligned_cols=148 Identities=12% Similarity=0.104 Sum_probs=97.5
Q ss_pred HHHHHhccccC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhh-CCCCCCeeEEe-CCCCC----CCCCC-
Q 018576 179 SNILESYKGFA-NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEH-APLHPHIEHVA-GDMFQ----SVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~rv~~~~-~d~~~----~~p~~- 249 (353)
..++..+. .. .+.+|||||||||.++..+++. +..+++++|+ +.|++. +++.+++.... .|+.. .+|..
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 45566665 43 4679999999999999998886 5569999999 677766 34456665443 24322 23433
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc-cccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-IESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++ ..+|++++++|+|||+++++- .|+..... .........+.. ...++.+++.+
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~~ 217 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVTA 217 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHHH
Confidence 999998888764 578999999999999999862 22210000 000000011111 11246789999
Q ss_pred HHHhcCCceeeEeee
Q 018576 328 LATGAGFSGIRSDLV 342 (353)
Q Consensus 328 ll~~aGf~~v~~~~~ 342 (353)
+++++||++..+...
T Consensus 218 ~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHTTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEEC
Confidence 999999998877654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=111.25 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=92.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hH----HHhhCCCCCCeeEEeCCCCCC--CC---CC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PH----VIEHAPLHPHIEHVAGDMFQS--VP---KG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~--~p---~~-D~i~~~ 255 (353)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +. +++.+++.++++++.+|+.++ ++ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999987 7789999998 44 345555557899999999872 22 23 999985
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.. ..+....++++++++|+|||++++.-....... ..... .+...+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~----------~~~~~---------~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDS----------TASAE---------AVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCS----------SSCHH---------HHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEccccccc----------CCCHH---------HHHHHH-HHHHHHCCCc
Confidence 44 233456779999999999999999422110000 00000 001123 5889999999
Q ss_pred eeeEeeeC
Q 018576 336 GIRSDLVT 343 (353)
Q Consensus 336 ~v~~~~~~ 343 (353)
.+++.+..
T Consensus 211 ~~~~~~~~ 218 (233)
T 2ipx_A 211 PQEQLTLE 218 (233)
T ss_dssp EEEEEECT
T ss_pred eEEEEecC
Confidence 98876654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=108.56 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=93.7
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCC--CCCCCC--cEEEecc
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMF--QSVPKG--DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~--~~~p~~--D~i~~~~ 256 (353)
..++.+|||+||| +|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+. .+++.+ |+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3567899999999 999999999987 789999999 7778777642 27999999964 345543 9999987
Q ss_pred ccccCCchH-----------------HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc
Q 018576 257 ILHDWDDEH-----------------CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319 (353)
Q Consensus 257 ~Lh~~~~~~-----------------~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (353)
.++..++.. ..++++++.+.|+|||++++..... .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------------~ 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK----------------------------E 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC----------------------------H
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc----------------------------H
Confidence 776543321 3689999999999999999864310 0
Q ss_pred cCHHHHHHHHHhcCCceeeEeee
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
...+++.+++++.||+...+...
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCceEEEEec
Confidence 12467888999999976665443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=113.37 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=78.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~L 258 (353)
..++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++. ++++++++|+.+ +|. . |+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~~ 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAALA 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTTC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCCc
Confidence 67889999999999988776667778999999999 8888888753 689999999986 233 3 999986542
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++..+++++++++|||||+|++.+.
T Consensus 199 -----~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 199 -----EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp -----SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -----cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 3356999999999999999999773
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=107.68 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=75.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC--CCCC-C-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ--SVPK-G-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p~-~-D~i~~~~ 256 (353)
..++.+|||||||+|.++..+++. ..+++++|. +.+++.++++ ++++++..|+.. ..+. . |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 356789999999999999999988 789999999 7788877653 679999977655 1333 3 9998773
Q ss_pred -ccccC------CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 257 -ILHDW------DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 257 -~Lh~~------~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
.++.- ..+....+|++++++|+|||++++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 33220 1245568899999999999999998653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-12 Score=111.01 Aligned_cols=127 Identities=11% Similarity=0.095 Sum_probs=99.0
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
..++..+. ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+.++..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 677889999999999999999999 78999999999 7788777653 45999999998866654
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++. .++. ..+++++.++|+|||++++..+... ..+++.+
T Consensus 162 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 205 (255)
T 3mb5_A 162 NVDHVILD-----LPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHE 205 (255)
T ss_dssp SEEEEEEC-----SSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred CcCEEEEC-----CCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHH
Confidence 999873 3333 4789999999999999998754210 1346778
Q ss_pred HHHhcC--CceeeEeee
Q 018576 328 LATGAG--FSGIRSDLV 342 (353)
Q Consensus 328 ll~~aG--f~~v~~~~~ 342 (353)
++++.| |..+++...
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 888999 988776543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=118.50 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=86.7
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------CCeeEEeCCCCCCCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~rv~~~~~d~~~~~p~~ 249 (353)
.+++.++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .++++..+|+.++++.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44558999999999999999999999999999999 7778777653 25888999999876654
Q ss_pred --cEEEecccccc---CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 --DAIFLKWILHD---WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 --D~i~~~~~Lh~---~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|+++..+|. ..+....+++++++++|+|||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999999985 3344556899999999999999999753
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=108.22 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=80.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C-CC-CC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S-VP-KG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~-~p-~~-D~i~~ 254 (353)
..++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++. ++++++.+|+.+ + .. +. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999987 6789999999 7788777653 579999999876 2 33 33 99998
Q ss_pred cccccc-------CCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 255 KWILHD-------WDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 255 ~~~Lh~-------~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
...+.. ...+...++++++.++|+|||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 875511 11234567999999999999999998754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=104.75 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=80.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC--CCeEEEecchHHHhhCCCCCCeeEEeCCCCC-C---------
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP--YIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-S--------- 245 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------- 245 (353)
..++.+.+.-+.+..+|||||||+|.++..+++.+| +.+++++|++++ ...++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 445566655245678999999999999999999998 689999999553 123679999999987 4
Q ss_pred ----------------CCCC--cEEEeccccccCC----chH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018576 246 ----------------VPKG--DAIFLKWILHDWD----DEH-----CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 246 ----------------~p~~--D~i~~~~~Lh~~~----~~~-----~~~~L~~~~~~L~pgG~l~i~e 287 (353)
++.. |+|++...+|... +.. ..++|++++++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3433 9999988877532 111 1248999999999999998744
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-12 Score=108.49 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-C--CCCC--cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-S--VPKG--DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~--D~i~~~~~ 257 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ + ++.+ |.|++.+.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 777776654 2579999999876 3 5544 98887654
Q ss_pred cccCCchH------HHHHHHHHHHhCCCCCEEEEEe
Q 018576 258 LHDWDDEH------CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 258 Lh~~~~~~------~~~~L~~~~~~L~pgG~l~i~e 287 (353)
........ ...+|++++++|+|||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32211100 2578999999999999999865
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-11 Score=104.89 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=79.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC---CCCC--C-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ---SVPK--G-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p~--~-D~i 252 (353)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++++++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44578999999999999999999998 899999999 7777776542 589999999865 2222 3 999
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++... ......+|+++.+.|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 88643 3445789999999999999998876654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-12 Score=105.95 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=92.8
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC--C-
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK--G- 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~- 249 (353)
++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. +++++..+|+.++++. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 444444 6677899999999999999999987 79999998 7777766542 5799999998764442 3
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLA 329 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 329 (353)
|+|++..++|+ ...+++++.++|+|||++++..... .+..++.+++
T Consensus 102 D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~l 147 (192)
T 1l3i_A 102 DIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMECL 147 (192)
T ss_dssp EEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHHH
Confidence 99999988764 3688999999999999999866421 1245678889
Q ss_pred HhcCCce
Q 018576 330 TGAGFSG 336 (353)
Q Consensus 330 ~~aGf~~ 336 (353)
++.||..
T Consensus 148 ~~~g~~~ 154 (192)
T 1l3i_A 148 RDLGFDV 154 (192)
T ss_dssp HHTTCCC
T ss_pred HHCCCce
Confidence 9999943
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=105.59 Aligned_cols=133 Identities=13% Similarity=0.095 Sum_probs=90.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHH----HhhCCCCCCeeEEeCCCCCCC-----CCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHV----IEHAPLHPHIEHVAGDMFQSV-----PKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~~-----p~~-D~i~~~ 255 (353)
+.++.+|||+|||+|.++..+++.. |+.+++++|. +.+ ++.++++.++.++.+|+..+. ++. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 5678999999999999999999875 6889999999 544 344555578999999987631 223 999887
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
... + .....+++.+++.|||||+|++.......+... ... ...++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~-------------------~~~-e~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTK-------------------DPK-EIYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-------C-------------------CSS-SSTTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCC-------------------CHH-HHHHHHHHHHHHCCCE
Confidence 554 2 233345566777999999999984321111000 111 1123455678889999
Q ss_pred eeeEeeeCC
Q 018576 336 GIRSDLVTG 344 (353)
Q Consensus 336 ~v~~~~~~~ 344 (353)
+++...+.+
T Consensus 210 ~~~~~~l~p 218 (232)
T 3id6_C 210 TIQIINLDP 218 (232)
T ss_dssp EEEEEECTT
T ss_pred EEEEeccCC
Confidence 999887743
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-12 Score=114.41 Aligned_cols=129 Identities=14% Similarity=0.169 Sum_probs=94.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC-CC--CC-C-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ-SV--PK-G-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~-~~--p~-~-D~i 252 (353)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 777776553 2689999999876 22 33 3 999
Q ss_pred EeccccccCCchHH--HHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 253 FLKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
++....+..+.... ..++++++++|+|||.+++..... +. ......++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence 99877765543322 589999999999999999874210 00 0123567889999
Q ss_pred hcCCceeeEeee
Q 018576 331 GAGFSGIRSDLV 342 (353)
Q Consensus 331 ~aGf~~v~~~~~ 342 (353)
++||..+++...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998877643
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-12 Score=111.56 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCC----CC-cEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVP----KG-DAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p----~~-D~i~~~ 255 (353)
.+..+|||||||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.+ .. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999889999999999 7777776542 469999999876 432 33 999987
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.+ .+ ...+++.++++|+|||++++...... ....+++.+.+++.||+
T Consensus 149 ~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~---------------------------~~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKKNGLFVALKAASA---------------------------EEELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C---------------------------HHHHHHHHHHHHHTTEE
T ss_pred cc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc---------------------------hHHHHHHHHHHHHcCCe
Confidence 63 22 56899999999999999988632100 00134677889999999
Q ss_pred eeeEee
Q 018576 336 GIRSDL 341 (353)
Q Consensus 336 ~v~~~~ 341 (353)
.+++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-12 Score=111.57 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCC----CCCC--cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQS----VPKG--DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----~p~~--D~i~~~~ 256 (353)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999999 777776653 25799999998662 5554 9998875
Q ss_pred ccccCCchHH------HHHHHHHHHhCCCCCEEEEEee
Q 018576 257 ILHDWDDEHC------LKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~~~~~~~------~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.......... ..++++++++|+|||++++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 5432222211 2599999999999999998764
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-12 Score=118.98 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=88.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cE
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DA 251 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~ 251 (353)
+.+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34556664 34467999999999999999999999999999999 6677776642 34678899988744444 99
Q ss_pred EEeccccccC---CchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDW---DDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~---~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+++.++|+. ......++|++++++|+|||.++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 9999999862 3455789999999999999999998753
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-13 Score=119.37 Aligned_cols=145 Identities=8% Similarity=-0.027 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC----CCC----CC-cEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ----SVP----KG-DAI 252 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~----~~p----~~-D~i 252 (353)
++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+ +++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999999 7788776642 469999998543 444 23 999
Q ss_pred EeccccccCCc-------------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc
Q 018576 253 FLKWILHDWDD-------------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319 (353)
Q Consensus 253 ~~~~~Lh~~~~-------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (353)
+++..+|.... .....++++++++|+|||.+.+++....... .......+ .. ...+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~------~~l~~~g~--~~-~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL------QLKKRLRW--YS-CMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH------HHGGGBSC--EE-EEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHH------hcccceEE--EE-ECCCCh
Confidence 99877665431 0123567889999999999988775432100 00000000 00 012334
Q ss_pred cCHHHHHHHHHhcCCceeeEeeeC
Q 018576 320 RTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456889999999999998877653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-12 Score=112.27 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++...-.++.+|+.+ +++.+ |+|++..+++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999987 568999999 7788777654222388899887 66554 999998876666433
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
..++|++++++|+|||++++....
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 679999999999999999998764
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-12 Score=105.26 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C-CeeEEeCCCCCC-CCCC-cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P-HIEHVAGDMFQS-VPKG-DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-rv~~~~~d~~~~-~p~~-D~i~~~~~L 258 (353)
..+.+|||||||+|-++..++...|+.+++++|+ +.+++.++++ . ++++ .|.... .+.. |+|++..+|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4578999999999999999999999999999999 7788877653 1 4555 666553 3344 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
|.+ ++ ....+.+++++|+|||.++-.+.-.=..+. ++-.......|++.. ...+.+++
T Consensus 126 HlL-~~-~~~al~~v~~~L~pggvfISfptksl~Gr~-------------------~gm~~~Y~~~~~~~~-~~~~~~~~ 183 (200)
T 3fzg_A 126 PVL-KQ-QDVNILDFLQLFHTQNFVISFPIKSLSGKE-------------------KGMEENYQLWFESFT-KGWIKILD 183 (200)
T ss_dssp HHH-HH-TTCCHHHHHHTCEEEEEEEEEECCCCC--C-------------------TTCCCCHHHHHHHHT-TTTSCEEE
T ss_pred Hhh-hh-hHHHHHHHHHHhCCCCEEEEeChHHhcCCC-------------------cchhhhHHHHHHHhc-cCcceeee
Confidence 999 33 456677999999999988876621111110 111223456777777 45667777
Q ss_pred EeeeCCc
Q 018576 339 SDLVTGN 345 (353)
Q Consensus 339 ~~~~~~~ 345 (353)
....++-
T Consensus 184 ~~~~~nE 190 (200)
T 3fzg_A 184 SKVIGNE 190 (200)
T ss_dssp EEEETTE
T ss_pred eeeeCce
Confidence 7666543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=117.39 Aligned_cols=106 Identities=19% Similarity=0.148 Sum_probs=85.9
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D 250 (353)
.+.+.+. ..++.+|||||||+|.++..+++. +..+++++|.+++++.+++. ++++++.+|+.+ +.++. |
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D 118 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD 118 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCcee
Confidence 4555555 556789999999999999998885 56799999996666655432 679999999987 66655 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+|++...++++..+.....+.++++.|+|||++++..
T Consensus 119 ~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 119 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999999888876767788999999999999998543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-12 Score=108.29 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=87.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeE--------Ee-CCCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEH--------VA-GDMFQSVP 247 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~--------~~-~d~~~~~p 247 (353)
..+++.+.....+.+|||||||||.++..+++. +..+++++|+ +.+++.+++ .+++.. .. .|+..+.+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 345555552234579999999999999999987 3359999999 677766543 233332 22 22221112
Q ss_pred CCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-ccccccccccchhhhhhCCCCcccCHHHHH
Q 018576 248 KGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT-SIESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 248 ~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
|.+.+..++..+ ..+|++++++|+|||++++.. .|..... ..........+.. ....+.+++.
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l~ 168 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKVL 168 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHHH
Confidence 444444444433 578999999999999999853 1110000 0000000000100 1123678999
Q ss_pred HHHHhcCCceeeEeee
Q 018576 327 TLATGAGFSGIRSDLV 342 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~~ 342 (353)
++++++||+++.+...
T Consensus 169 ~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 169 KTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHTEEEEEEEEC
T ss_pred HHHHHCCCEEEEEEEc
Confidence 9999999998877654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-12 Score=104.83 Aligned_cols=109 Identities=11% Similarity=0.064 Sum_probs=84.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CC---CCC--cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SV---PKG--DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~---p~~--D~i~~~~~L 258 (353)
..++.+|||||||+ +.+|. +.|++.++++ .+++++.+|+.+ +. +.+ |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56788999999996 23787 7788877653 369999999987 54 544 999999999
Q ss_pred ccC-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 259 HDW-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 259 h~~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
|++ ++. .++|++++++|||||++++.++...... . ....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~------------~--------~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD------------N--------NSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC------------S--------SSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc------------c--------ccccCCHHHHHHHHHHCCC
Confidence 998 553 6899999999999999999765432210 0 1123578999999999999
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=101.68 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=83.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-C--------CCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-S--------VPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------~p~~ 249 (353)
.+...+....+..+|||+|||+|.++..+++.+ |+.+++++|.+.+++ .+++++..+|+.+ + ++.+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCC
Confidence 445555424566799999999999999999995 778999999955432 2689999999987 4 5543
Q ss_pred --cEEEeccccccCCchH---------HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 --DAIFLKWILHDWDDEH---------CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~---------~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|...... ...+++++.+.|+|||++++.+..
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999988765431 158899999999999999987753
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=102.36 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=92.6
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D 250 (353)
.+...+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.++++ ++++++.+|+.++++. . |
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444454 56678999999999999999998 7889999998 7777776653 5799999998775554 3 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++..+ + ....+++++++. |||++++..... .+..++.++++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~-----------------------------~~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVL-----------------------------ENAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCH-----------------------------HHHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEeccc-----------------------------ccHHHHHHHHH
Confidence 9999988 2 246889999988 999999877421 01346778899
Q ss_pred hcCCceeeE
Q 018576 331 GAGFSGIRS 339 (353)
Q Consensus 331 ~aGf~~v~~ 339 (353)
+.||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=106.20 Aligned_cols=98 Identities=11% Similarity=0.099 Sum_probs=78.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-------CC-c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-------KG-D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-------~~-D 250 (353)
..++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+..+ .. |
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34578999999999999999999998 789999998 7777766542 479999999865221 23 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|++.... .....+++++.+.|+|||.+++.+...
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99876542 345689999999999999888876654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=109.01 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=96.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-CCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 248 (353)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .+++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 35566565 677889999999999999999998 67899999998 777766653 2689999999987 4665
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
+ |+|++. +++. ..+|+++.++|+|||++++..+... ...++.
T Consensus 165 ~~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVALD-----LMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 4 999973 3333 4789999999999999999774210 123566
Q ss_pred HHHHhcCCceeeEee
Q 018576 327 TLATGAGFSGIRSDL 341 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~ 341 (353)
+.++++||+.+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 677888998776654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=106.21 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=93.5
Q ss_pred cC-CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-C--CCC-C-cEEE
Q 018576 188 FA-NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-S--VPK-G-DAIF 253 (353)
Q Consensus 188 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~--~p~-~-D~i~ 253 (353)
.. +..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++. ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999998776 9999999 7777776542 479999999987 3 333 3 9999
Q ss_pred eccccccC------------------CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC
Q 018576 254 LKWILHDW------------------DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP 315 (353)
Q Consensus 254 ~~~~Lh~~------------------~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (353)
++-.++.. .......+++.+.+.|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 97554332 012346799999999999999998421 1
Q ss_pred CCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 316 GGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 316 ~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
....++.+++++.||...++.++
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEe
Confidence 12456778888899988776654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=114.28 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=86.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC-------CC--------CCCeeEEeCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA-------PL--------HPHIEHVAGDM 242 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~rv~~~~~d~ 242 (353)
..++..+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ ..+++++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 44555555 66788999999999999999999888889999998 5565555 32 25799998765
Q ss_pred CC-C--C---CC-CcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 243 FQ-S--V---PK-GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 243 ~~-~--~---p~-~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
+. + + .. .|+|+++++++. ++...+|+++.+.|+|||+|++.+...+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 42 2 2 12 299999877742 456788999999999999999998877654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=108.09 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=84.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHH--CCCCeEEEecc-hHHHhhCCCC---C-------C------------
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSK--YPYIKGINFDQ-PHVIEHAPLH---P-------H------------ 234 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------r------------ 234 (353)
.+++.+. ..+..+|||+|||+|.++..+++. +|..+++++|+ +.+++.|++. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 335679999999999999999998 78889999999 7788777632 2 2
Q ss_pred -------------ee-------------EEeCCCCCCC------CC-C-cEEEeccccccCCc-------hHHHHHHHHH
Q 018576 235 -------------IE-------------HVAGDMFQSV------PK-G-DAIFLKWILHDWDD-------EHCLKLLKNC 273 (353)
Q Consensus 235 -------------v~-------------~~~~d~~~~~------p~-~-D~i~~~~~Lh~~~~-------~~~~~~L~~~ 273 (353)
++ +..+|++++. +. . |+|+++..++...+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 67 9999998854 33 4 99999877765443 4567999999
Q ss_pred HHhCCCCCEEEEEeee
Q 018576 274 YKSVPEDGKVIVVELM 289 (353)
Q Consensus 274 ~~~L~pgG~l~i~e~~ 289 (353)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999985543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=118.69 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=86.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~ 249 (353)
...+++.+. ..++.+|||||||+|.++..+++ .+..+++++|.+.+++.|++. ++|+++.+|+.+ +.++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 345566555 55678999999999999998887 577899999996677666542 689999999988 66655
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
|+|++...+|++.++.....+.++++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999888888777778889999999999999985
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=111.95 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=79.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCC-C-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPK-G- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~- 249 (353)
.+.+.+. ..++.+|||||||+|.++..+++. +..+++++|.+++++.+++. ++++++.+|+.+ ++|. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444444 566789999999999999999887 45699999996577766542 689999999988 6663 3
Q ss_pred cEEEecc---ccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 250 DAIFLKW---ILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 250 D~i~~~~---~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
|+|++.. .+++ ......+|+++++.|+|||+++
T Consensus 133 D~Ivs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLF--ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence 9999876 3443 3446789999999999999987
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-11 Score=102.13 Aligned_cols=129 Identities=9% Similarity=0.075 Sum_probs=100.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC---CcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK---GDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~---~D~i~~~~~ 257 (353)
+++.+|+|||||+|..++.+++..|..+++++|. +.+++.|+++ ++|+++.+|.+++++. .|+|++...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999999999999999 6777776642 5799999999886652 398887655
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
- .+-...+|..+.+.|+|+|+|++.-. ...+..+++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEE
Confidence 2 34467999999999999999887332 024568899999999988
Q ss_pred eEee---eCCceEEEEEe
Q 018576 338 RSDL---VTGNFWVMEFY 352 (353)
Q Consensus 338 ~~~~---~~~~~~vi~~~ 352 (353)
+..- .+.++.+|.+.
T Consensus 139 ~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 7542 23456666654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=106.07 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------CCCCeeEEeCCCCC--C--CCCC--
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------LHPHIEHVAGDMFQ--S--VPKG-- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~--~--~p~~-- 249 (353)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ ...+++++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999999 66766442 23679999999976 2 4454
Q ss_pred cEEEeccccccCCch--H----HHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 DAIFLKWILHDWDDE--H----CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~--~----~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|.|++.+.-...... . ...+|++++++|+|||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 888865433211100 0 13799999999999999998753
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-11 Score=100.14 Aligned_cols=100 Identities=8% Similarity=-0.090 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CC-CC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VP-KG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p-~~-D~i~~~~ 256 (353)
.++.+|||+|||+|.++..+++. +..+++++|. +.+++.++++ ++++++++|+.+ . .+ +. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999988774 5668999999 7788877653 589999999876 2 32 33 9999998
Q ss_pred ccccCCchHHHHHHHHHHH--hCCCCCEEEEEeeec
Q 018576 257 ILHDWDDEHCLKLLKNCYK--SVPEDGKVIVVELML 290 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~~~ 290 (353)
.+|.. .+...++++++.+ +|+|||++++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 87653 3567899999999 999999999977643
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.6e-12 Score=109.17 Aligned_cols=121 Identities=8% Similarity=-0.037 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCC----CC-cEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVP----KG-DAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p----~~-D~i~~~ 255 (353)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+++++.+|+.+ +.. +. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4578999999999999999999999999999998 7777766642 469999999876 331 23 999987
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
.+- + ...+++.+.+.|+|||++++....... ....++...++..||.
T Consensus 159 a~~----~--~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC----C--HHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 2 368999999999999999986532100 0122466778889999
Q ss_pred eeeEeee
Q 018576 336 GIRSDLV 342 (353)
Q Consensus 336 ~v~~~~~ 342 (353)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8887765
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=101.85 Aligned_cols=129 Identities=10% Similarity=0.046 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-C-C-cEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-K-G-DAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~-~-D~i~~~~~ 257 (353)
+++.+|+|||||+|.+++.+++..|..+++++|. +.+++.|+++ ++|+++.+|.++.++ . . |+|++...
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 3568999999999999999999998889999999 7777777652 579999999998544 2 3 99987765
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
. .+-...+|....+.|+++|+|++.-.. ..+.+++||.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPNN-------------------------------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 4 345778999999999999998875420 15678899999999998
Q ss_pred eEee---eCCceEEEEEe
Q 018576 338 RSDL---VTGNFWVMEFY 352 (353)
Q Consensus 338 ~~~~---~~~~~~vi~~~ 352 (353)
+..- .+.++.+|.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 7553 24567777664
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.7e-11 Score=106.27 Aligned_cols=120 Identities=10% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~L 258 (353)
.++.+|||+|||+|.++..+++..+. +++++|. +.+++.++++ ++++++++|+.+..+. . |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999999876 8999999 7778776542 4699999999883333 3 999886442
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
....+++++.++|+|||.+++.+...... ......+++.+.++++||+...
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 12578999999999999999988753210 0012466788999999998765
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=108.52 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=82.0
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
..++..+. ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+.++.+
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 34555555 677789999999999999999999 57899999998 7777766542 57999999998765543
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++. .++. ..+|+++.++|+|||++++...
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence 999873 3333 4789999999999999999774
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=104.83 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~ 260 (353)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++++..+|+.+..+. . |+|++..+ ++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~ 143 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC
Confidence 367999999999999999999999999999998 7777766542 4599999999874343 3 99997543 22
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
...++++++++|+|||++++..
T Consensus 144 -----~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 144 -----LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEe
Confidence 4689999999999999999863
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=107.45 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---C-----CCC-c
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---V-----PKG-D 250 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~-----p~~-D 250 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++|+++.+|+.+. . ++. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3468999999999999999999986 789999998 6677666542 5899999998762 1 233 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+|++... ......+|+++.+.|+|||.|++-+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 9988654 244568999999999999999997776543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=112.58 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
..++.+|||||||+|.++..+++. +..+++++|.+++++.|++. ++++++.+|+.+ ++|.+ |+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345789999999999999999987 66799999997677766542 569999999988 67744 99999765
Q ss_pred cccCC-chHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 LHDWD-DEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 Lh~~~-~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+.+. ......+++.+.++|+|||+++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 44432 33467899999999999999874
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=103.47 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=80.3
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-C-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K-G- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~- 249 (353)
.++..+. ..++.+|||||||+|.++..+++. ..+++++|. +.+++.++++ ++++++.+|..+..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 4455555 667889999999999999999998 679999999 7777776542 579999999987333 3 3
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|++++ ++++.|+|||++++....
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999875 478899999999997654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=103.83 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=81.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K-G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~ 249 (353)
.++..+. ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++. +++++..+|+..+.+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4445454 5667899999999999999999988 6689999998 7777776642 569999999866554 2 3
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++..++|+++ +++++.|+|||++++...
T Consensus 147 fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 9999999999876 367889999999999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=103.32 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHH----CCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCCC--CC---C-C-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK----YPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQS--VP---K-G-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--~p---~-~-D~i~~~~ 256 (353)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. .++|+++.+|+.+. ++ . . |+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 68899999999 777777764 36899999999763 22 3 2 9998765
Q ss_pred ccccCCchHHHHHHHHHHH-hCCCCCEEEEEee
Q 018576 257 ILHDWDDEHCLKLLKNCYK-SVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~-~L~pgG~l~i~e~ 288 (353)
. |. +..++|+++.+ .|+|||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 5 42 35689999997 9999999999765
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-11 Score=108.62 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=79.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---CCCC-C-cEEEecccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---SVPK-G-DAIFLKWIL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~-~-D~i~~~~~L 258 (353)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+|++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 788887764 2689999999876 2333 3 999987555
Q ss_pred ccCCchH--HHHHHHHHHHhCCCCCEEEEEeee
Q 018576 259 HDWDDEH--CLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 259 h~~~~~~--~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+...... ...++++++++|+|||.+++....
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 4322222 258999999999999999987653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-11 Score=112.42 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=80.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~L 258 (353)
..++.+|||||||+|.++..+++. ...+++++|.+.+++.+++. ++++++.+|+.+ +.++. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 556789999999999999999987 33499999997777666542 569999999987 66654 999997766
Q ss_pred ccCCc-hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 259 HDWDD-EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 259 h~~~~-~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|.+.. .....+++++++.|+|||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 66542 33678999999999999999876654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-11 Score=106.27 Aligned_cols=98 Identities=17% Similarity=0.307 Sum_probs=79.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC----CC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP----KG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p----~~-D~i~~ 254 (353)
..++.+|||||||+|..+..+++.+|..+++++|. +.+++.+++. ++++++.+|+.+..+ .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34578999999999999999999889999999999 7777777642 489999999987433 33 99987
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
... ......+++++.+.|+|||+|++-+...
T Consensus 149 ~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred cCc-----HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 643 2335689999999999999998865543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=100.14 Aligned_cols=129 Identities=10% Similarity=0.062 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-C--CcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-K--GDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~--~D~i~~~~~ 257 (353)
+++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|+++ ++|++..+|.++.++ . .|+|++...
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4568999999999999999999998889999999 7777777652 579999999998544 2 399887655
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
. .+-+..+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 3 345778999999999999999885420 25578899999999986
Q ss_pred eEee---eCCceEEEEEe
Q 018576 338 RSDL---VTGNFWVMEFY 352 (353)
Q Consensus 338 ~~~~---~~~~~~vi~~~ 352 (353)
+..- .+-++-+|.+.
T Consensus 145 ~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 6442 33456666654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-11 Score=103.75 Aligned_cols=99 Identities=10% Similarity=0.158 Sum_probs=78.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC---CCC-----CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ---SVP-----KG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~---~~p-----~~- 249 (353)
..++.+|||||||+|..+..+++.++ +.+++++|. +.+++.++++ ++++++.+|+.+ ..+ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34578999999999999999999875 789999999 7788877652 479999999754 222 23
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++....+++. ...++++.+ +.|+|||.|++.+..
T Consensus 136 D~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999988777653 234677777 999999999886554
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=96.33 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=77.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC---------CeEEEecchHHHhhCCCCCCeeEE-eCCCCC-C---
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY---------IKGINFDQPHVIEHAPLHPHIEHV-AGDMFQ-S--- 245 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~rv~~~-~~d~~~-~--- 245 (353)
++...+..+.++.+|||||||+|.++..+++.++. .+++++|+.++ ...++++++ .+|+.. +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44455553456789999999999999999999865 79999999553 123578999 999876 2
Q ss_pred -----CCC-C-cEEEeccccccC----CchH-----HHHHHHHHHHhCCCCCEEEEEee
Q 018576 246 -----VPK-G-DAIFLKWILHDW----DDEH-----CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 246 -----~p~-~-D~i~~~~~Lh~~----~~~~-----~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++. . |+|++...+|.. .+.. ..+++++++++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 233 3 999987655431 1111 14889999999999999998764
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-11 Score=110.36 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCC------chHHHHHHHHH-CCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCC-------CC-cE
Q 018576 189 ANIKQLVDVGGN------LGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVP-------KG-DA 251 (353)
Q Consensus 189 ~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p-------~~-D~ 251 (353)
.++.+||||||| +|..+..++++ +|+.+++++|+ +.+. ...++++++++|+.+ +++ .. |+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 356899999999 77777777765 59999999999 5553 234789999999987 554 23 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|++.. .|++ .+..++|++++++|||||++++.|...
T Consensus 292 Visdg-sH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 292 VIDDG-SHIN--AHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp EEECS-CCCH--HHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred EEECC-cccc--hhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 99864 4654 346799999999999999999998763
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-11 Score=105.62 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCC-CCCCC--cEEEeccccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~ 263 (353)
.++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++.+..+|+.+ +++.+ |+|++.++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4567999999999999999999998899999999 7788777653 678999999987 66554 999987653
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+++++++|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24899999999999999998654
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-11 Score=104.60 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=80.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC-----CCC-cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV-----PKG-DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~-----p~~-D~i~ 253 (353)
..++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+.. +.. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999999 7777766542 57999999987622 233 9999
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+....+ ....+|+++.+.|+|||++++.+...
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 987764 34689999999999999999876543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-11 Score=103.21 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC-----CC-c
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP-----KG-D 250 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~~-D 250 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999998 789999999 7777766542 5799999998652 11 33 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
+|++... ......+++++++.|+|||+|++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9986543 34457899999999999999998776643
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-11 Score=99.25 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=80.1
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VPK 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p~ 248 (353)
.+.+.+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 34443332345689999999999999999987 6679999999 7777776542 4699999998762 223
Q ss_pred C-cEEEeccccccCCchHHHHHHHHHH--HhCCCCCEEEEEeeec
Q 018576 249 G-DAIFLKWILHDWDDEHCLKLLKNCY--KSVPEDGKVIVVELML 290 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~~~~~L~~~~--~~L~pgG~l~i~e~~~ 290 (353)
. |+|++...+|. .....+++.+. ++|+|||.+++.....
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 4 99999877653 33456777776 8999999999877654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.14 E-value=4.4e-11 Score=104.49 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC--------------CCCCeeEEeCCCCCC----CCCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP--------------LHPHIEHVAGDMFQS----VPKG 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~rv~~~~~d~~~~----~p~~ 249 (353)
++..+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ ..++++++.+|+.+. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567999999999999999999999999999998 66665542 225799999999863 3333
Q ss_pred --cEEEeccccccCCchHH-----------HHHHHHHHHhCCCCCEEEEEe
Q 018576 250 --DAIFLKWILHDWDDEHC-----------LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~-----------~~~L~~~~~~L~pgG~l~i~e 287 (353)
|.|++. +++... ..+++++.++|+|||.|++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 666543 222211 479999999999999999953
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.9e-11 Score=103.44 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPK-G 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~-~ 249 (353)
...+++.+. ..+..+|||||||+|.++..+++..+ .+++++|. +.+++.+++. +++++..+|+..+++. .
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 344555555 66778999999999999999999988 89999998 7777766542 4699999998545553 2
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..+++++.+ ++.+.|+|||++++....
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 99999999998763 578899999999987653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=101.13 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-----------
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP----------- 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p----------- 247 (353)
..++.+|||||||+|..+..+++.+| ..+++++|. +.+++.+++. ++++++.+|+.+..+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34578999999999999999999987 689999999 7777766542 459999999765211
Q ss_pred --------CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 248 --------KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 248 --------~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.. |+|++.... .....+++++++.|+|||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 33 999987543 345688999999999999999876544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.7e-11 Score=104.24 Aligned_cols=100 Identities=12% Similarity=0.194 Sum_probs=76.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------C---CCeeEEeCCCCCC--------CCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------H---PHIEHVAGDMFQS--------VPK 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~---~rv~~~~~d~~~~--------~p~ 248 (353)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ . ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 667665543 1 3699999999874 233
Q ss_pred -C-cEEEeccccccC----------------CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 -G-DAIFLKWILHDW----------------DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~----------------~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|+++-.++.. .......+++.+.+.|+|||+++++-
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 999998443321 12235789999999999999999854
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=95.53 Aligned_cols=108 Identities=14% Similarity=0.236 Sum_probs=79.1
Q ss_pred hhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCC--------
Q 018576 175 SLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSV-------- 246 (353)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~-------- 246 (353)
...+.++.+.+.-+.++.+|||+|||+|.++..+++. ..+++++|+.++ ...++++++++|+.+..
T Consensus 10 ~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~ 83 (191)
T 3dou_A 10 AFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRA 83 (191)
T ss_dssp HHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHH
Confidence 3345567777763467789999999999999999988 779999999543 23468999999998721
Q ss_pred -C----CC-cEEEeccccccCC----c-----hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 247 -P----KG-DAIFLKWILHDWD----D-----EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 247 -p----~~-D~i~~~~~Lh~~~----~-----~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ .. |+|++........ + +.+..+|+.+.++|+|||+|++...
T Consensus 84 ~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 84 LREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 23 9999864322111 1 1245789999999999999997554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=6.5e-11 Score=102.21 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=80.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCCCCC-C-C-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQSVP-K-G-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~~~p-~-~-D 250 (353)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++. .+++++.+|+.+..+ . . |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555555 6667899999999999999999986 78999998 7777766543 379999999977433 2 3 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+|++..++|++.+ ++.+.|+|||++++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 9999999998763 478899999999998753
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.5e-11 Score=107.03 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=81.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-C-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP-K-G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p-~-~ 249 (353)
.++..+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.++++ ++++++.+|+.+..+ . .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 4455555 66778999999999999999999887 488999998 7777776542 569999999977332 2 3
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++..++|++. +++.+.|+|||++++....
T Consensus 145 fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred eEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 9999999999876 3577899999999998643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=107.66 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCC-CC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVP-KG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p-~~-D~i~~~~~Lh~ 260 (353)
++.+|||+|||+|.++..+++. +.+++++|. +.+++.++++ .+++++.+|+.+ ..+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4679999999999999999997 569999998 7778777653 258999999988 344 23 99999999987
Q ss_pred ---CCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 261 ---WDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 261 ---~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
...+...+++++++++|+|||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3346678999999999999999999753
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-11 Score=106.93 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=76.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC-------CCeeEEeCCCCC-CCCC-C-cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH-------PHIEHVAGDMFQ-SVPK-G-DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~-D~i~~~~~ 257 (353)
..++.+|||||||+|.++..+++. +..+++++|.+++++.+++. ++++++.+|+.+ +.|. . |+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345689999999999999998886 55699999997677665542 579999999988 6663 3 99998865
Q ss_pred cccCC-chHHHHHHHHHHHhCCCCCEEEE
Q 018576 258 LHDWD-DEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 Lh~~~-~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+.+. ......+++++.+.|+|||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 44432 33456899999999999999974
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-10 Score=100.62 Aligned_cols=107 Identities=14% Similarity=-0.007 Sum_probs=76.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC--C------CeeEE--eCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH--P------HIEHV--AGDMFQSVP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------rv~~~--~~d~~~~~p 247 (353)
..++.+... +.+..+|||||||+|.++..+++. .+++++|+.+++..+++. . ++.++ .+|+.+.-+
T Consensus 63 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 138 (265)
T 2oxt_A 63 LAWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPV 138 (265)
T ss_dssp HHHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCC
T ss_pred HHHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCC
Confidence 344555422 556789999999999999999887 689999995564433322 2 68899 899986213
Q ss_pred CC-cEEEeccccccCCchH-----HHHHHHHHHHhCCCCC--EEEEEeee
Q 018576 248 KG-DAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDG--KVIVVELM 289 (353)
Q Consensus 248 ~~-D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG--~l~i~e~~ 289 (353)
+. |+|++... +...... ...+|+.++++|+||| .+++....
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 33 99999876 4332211 1248999999999999 88886554
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-11 Score=102.63 Aligned_cols=136 Identities=11% Similarity=-0.011 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCC-CC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVP-KG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p-~~-D~i~~~~~Lh~ 260 (353)
..+.+|||||||+|-++..+....|..+++++|+ +.+++.++++ .+.++...|+....| .. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 6778776653 457889999988444 44 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
+.+++....+ ++.++|+|+|.++-.+.-.=..+ .. +-.....+.|++.+.+.|.+ ++..
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Gr------------s~-------gm~~~Y~~~~e~~~~~~g~~-~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQR------------SK-------GMFQNYSQSFESQARERSCR-IQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC--------------------------CHHHHHHHHHHHHHHHHTCC-EEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCC------------Cc-------chhhHHHHHHHHHHHhcCCc-eeee
Confidence 9877666777 89999999988886665110110 00 11122367899999999984 4444
Q ss_pred eeCCc
Q 018576 341 LVTGN 345 (353)
Q Consensus 341 ~~~~~ 345 (353)
.+++-
T Consensus 270 ~~~nE 274 (281)
T 3lcv_B 270 EIGNE 274 (281)
T ss_dssp EETTE
T ss_pred eecCe
Confidence 55443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=101.45 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCC-CC---cEEEec--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVP-KG---DAIFLK-- 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p-~~---D~i~~~-- 255 (353)
+..+|||||||+|.++..+++. |+.+++++|+ +.+++.++++ ++++++.+|++++.+ .- |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999999 7788777642 369999999988543 34 999997
Q ss_pred ----------cccccCCch------HHHHHHHHHH-HhCCCCCEEEE
Q 018576 256 ----------WILHDWDDE------HCLKLLKNCY-KSVPEDGKVIV 285 (353)
Q Consensus 256 ----------~~Lh~~~~~------~~~~~L~~~~-~~L~pgG~l~i 285 (353)
.+. +.+.. +...+++++. +.|+|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 233 22111 1127899999 99999999997
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-10 Score=101.06 Aligned_cols=106 Identities=13% Similarity=-0.004 Sum_probs=75.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCC--C------CeeEE--eCCCCC-CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLH--P------HIEHV--AGDMFQ-SV 246 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------rv~~~--~~d~~~-~~ 246 (353)
..++.+... +.++.+|||||||+|.++..+++. .+++++|+..++..+++. . ++.++ .+|+.+ +
T Consensus 71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 145 (276)
T 2wa2_A 71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME- 145 (276)
T ss_dssp HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-
T ss_pred HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-
Confidence 344555422 456789999999999999999987 589999995564444322 2 68899 899876 3
Q ss_pred CCC-cEEEeccccccCCchH-----HHHHHHHHHHhCCCCC--EEEEEeee
Q 018576 247 PKG-DAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDG--KVIVVELM 289 (353)
Q Consensus 247 p~~-D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG--~l~i~e~~ 289 (353)
+.. |+|++... +...... ...+|+.+.++|+||| .+++....
T Consensus 146 ~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 333 99999877 4332211 1248999999999999 88885543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-11 Score=100.70 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC--CCCC-CcEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ--SVPK-GDAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~~p~-~D~i~~~~ 256 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ +... -|+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3467999999999999999999988 789999999 7788777642 479999999865 2223 38888763
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
. ......+++++++.|+|||++++.+...
T Consensus 135 ~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2 2335789999999999999999866544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=8.8e-11 Score=97.71 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=78.5
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC------
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV------ 246 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~------ 246 (353)
+.+.+....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.++++ ++++++.+|+.+..
T Consensus 35 ~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (187)
T 2fhp_A 35 IFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE 113 (187)
T ss_dssp HHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc
Confidence 334333234568999999999999999888 45679999999 7788777652 47999999987622
Q ss_pred CCC-cEEEeccccccCCchHHHHHHHHH--HHhCCCCCEEEEEeeec
Q 018576 247 PKG-DAIFLKWILHDWDDEHCLKLLKNC--YKSVPEDGKVIVVELML 290 (353)
Q Consensus 247 p~~-D~i~~~~~Lh~~~~~~~~~~L~~~--~~~L~pgG~l~i~e~~~ 290 (353)
+.. |+|++...+|... ...+++.+ .++|+|||.+++.....
T Consensus 114 ~~~fD~i~~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 114 KLQFDLVLLDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TCCEEEEEECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 9999988866322 34566666 88899999999876543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=99.53 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=75.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC---CC-CC-cEEEec
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS---VP-KG-DAIFLK 255 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~---~p-~~-D~i~~~ 255 (353)
..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. ++ +. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999985 789999999 7777766542 4799999998762 32 33 999886
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
... .....+++++.+.|+|||.+++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 433 334678999999999999999865543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=102.02 Aligned_cols=97 Identities=20% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC--C-C------CCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ--S-V------PKG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~--~-~------p~~- 249 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+ + . +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 4568999999999999999999987 789999999 7777766542 579999999865 2 2 233
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++.... .....+++++.+.|+|||.|++.+...
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 999986432 335789999999999999998866543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=97.49 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc--hHHHhhCCCC----------------CCeeEEeCCCCC---CC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ--PHVIEHAPLH----------------PHIEHVAGDMFQ---SV 246 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~rv~~~~~d~~~---~~ 246 (353)
...+.+|||||||+|.++..+++. ...+++++|. +.+++.++++ +++++...|..+ .+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 345679999999999999988875 3458999998 4666554321 268888665443 12
Q ss_pred -----CCC-cEEEeccccccCCchHHHHHHHHHHHhCC---C--CCEEEEE
Q 018576 247 -----PKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVP---E--DGKVIVV 286 (353)
Q Consensus 247 -----p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~---p--gG~l~i~ 286 (353)
+.. |+|++..++|+. +....+++.+.++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 233 999999999874 446799999999999 9 9998774
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-10 Score=102.95 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=84.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~ 248 (353)
...++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|+++ +++++.++|+.+ +.+.
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 334445444 6778899999999999999999988 8899999999 7788777653 379999999987 4443
Q ss_pred -C-cEEEeccccccCCc--hH----HHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 -G-DAIFLKWILHDWDD--EH----CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~~~--~~----~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
. |+|+++-..+.... .+ ...+++++++.|+|||+++++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 99999655432111 11 26899999999999999999653
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-10 Score=101.54 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=78.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC-CCC-cEEEec-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV-PKG-DAIFLK- 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~-p~~-D~i~~~- 255 (353)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+++++.+|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56678999999999999999999985 589999998 6777766542 479999999877 32 333 999983
Q ss_pred -----ccccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 -----WILHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 -----~~Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.+++. |+..+ ..++|+++.+.|||||+|++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 23332 22221 1589999999999999999877543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=98.55 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC--C--C-C-CcEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS--V--P-K-GDAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~--~--p-~-~D~i~~ 254 (353)
++.+|||+|||+|.++..++.... .+++++|. +.+++.++++ ++++++.+|+.+. . + . -|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 467999999999999998777643 58999999 7788777642 5899999998662 1 1 3 499999
Q ss_pred ccccccCCchHHHHHHHHH--HHhCCCCCEEEEEeeec
Q 018576 255 KWILHDWDDEHCLKLLKNC--YKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~--~~~L~pgG~l~i~e~~~ 290 (353)
...+| . .....+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 88865 2 3456888888 56799999999877644
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=98.40 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=76.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC------CCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCCCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP------YIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSVPK- 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p~- 248 (353)
..+..+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ .++++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45568999999999999999998765 369999998 777776654 24799999999875554
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+ |+|++...+|++. +++.+.|+|||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 3 9999999998764 567889999999998754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-10 Score=99.96 Aligned_cols=104 Identities=17% Similarity=0.226 Sum_probs=81.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC---------CCCeeEEeCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL---------HPHIEHVAGDMFQ-S 245 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~ 245 (353)
...++..+. ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345556565 677789999999999999999996 47889999999 777766543 2579999999987 4
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++.+ |+|++. .++. ..+|+++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence 5443 999883 2232 37899999999999999998753
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.1e-10 Score=99.03 Aligned_cols=104 Identities=15% Similarity=0.081 Sum_probs=72.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-----hHHHhhCC--CC--CCeeEEeC-CCCCCCCCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-----PHVIEHAP--LH--PHIEHVAG-DMFQSVPKG 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~rv~~~~~-d~~~~~p~~ 249 (353)
.+.+. ..+.++.+|||||||+|.++..+++. .+++++|. +..++... .. +++.++++ |+....++.
T Consensus 73 ~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~ 148 (305)
T 2p41_A 73 WFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPER 148 (305)
T ss_dssp HHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCC
Confidence 34444 21456689999999999999999987 47999998 43333222 12 57999999 887622233
Q ss_pred -cEEEeccccc---cCCchH-HHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILH---DWDDEH-CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh---~~~~~~-~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...++ ...+.. ...+|+.++++|+|||.+++..
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999976654 211221 2268999999999999888743
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-10 Score=96.00 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC--CCCC-C-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ--SVPK-G-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~--~~p~-~-D~i~~~~~L 258 (353)
+..+|||+|||+|.++..++++.. .+++++|. +.+++.++++ ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 367999999999999999887643 48999999 7788877642 489999999876 3333 3 999998776
Q ss_pred ccCCchHHHHHHHHHHH--hCCCCCEEEEEeeec
Q 018576 259 HDWDDEHCLKLLKNCYK--SVPEDGKVIVVELML 290 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~~~ 290 (353)
|. .....+++.+.+ +|+|||.+++.....
T Consensus 133 ~~---~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 RR---GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CC---CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 52 334577888876 499999999876543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-10 Score=94.40 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C-CeeEEeCCCCCCCC------CC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P-HIEHVAGDMFQSVP------KG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-rv~~~~~d~~~~~p------~~-D~i~~~~ 256 (353)
+..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ . +++++.+|+.+..+ +. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998765 999999 7788777653 2 79999999876221 13 9999998
Q ss_pred ccccCCchHHHHHHHHHH--HhCCCCCEEEEEeeec
Q 018576 257 ILHDWDDEHCLKLLKNCY--KSVPEDGKVIVVELML 290 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~--~~L~pgG~l~i~e~~~ 290 (353)
.+|. .. .++++.+. ++|+|||.+++.....
T Consensus 119 ~~~~-~~---~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DL---AALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CT---THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCch-hH---HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 8762 22 24455555 9999999999876644
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=95.09 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=79.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC-CC-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV-PK-G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~-p~-~ 249 (353)
.++..+. ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++++..+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4455555 667789999999999999999998 779999998 6777766542 57999999998854 44 3
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+|++. .++ ...+++++.++|+|||++++....
T Consensus 159 ~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VRE--PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSC--GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999973 222 247899999999999999998753
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-10 Score=102.27 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i~ 253 (353)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .++. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 777776543 36899999998762 2334 9999
Q ss_pred eccccccCCchHH--HHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e 287 (353)
+....+..+.... ..++++++++|+|||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8655443222222 689999999999999999863
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=96.20 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=76.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCC----
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-----PYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSV---- 246 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~---- 246 (353)
..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999987 5789999998 677776654 247999999987743
Q ss_pred -CC-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 247 -PK-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 247 -p~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+. . |+|++...+|++ ++++.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEcc
Confidence 22 2 999999998864 46678899999999997654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-11 Score=105.98 Aligned_cols=136 Identities=17% Similarity=0.106 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC-C-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK-G-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh 259 (353)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+..+. . |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999974 79999999 7788777642 4799999999873233 3 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRS 339 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~ 339 (353)
+..+. ...+.+++++|+|||.+++..... ... .. .. . -......+++..++...|.-.+..
T Consensus 156 ~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~-~~~------~~--~~----~----lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYA--TAETFDIRTMMSPDGFEIFRLSKK-ITN------NI--VY----F----LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGG--GSSSBCTTTSCSSCHHHHHHHHHH-HCS------CE--EE----E----EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchh--hhHHHHHHhhcCCcceeHHHHHHh-hCC------ce--EE----E----CCCCCCHHHHHHHhccCCCEEEEe
Confidence 86544 346788999999999955433211 000 00 00 0 011235677788887777665555
Q ss_pred eeeCCce
Q 018576 340 DLVTGNF 346 (353)
Q Consensus 340 ~~~~~~~ 346 (353)
....+..
T Consensus 217 ~~~~~~~ 223 (241)
T 3gdh_A 217 NFLNNKL 223 (241)
T ss_dssp EEETTEE
T ss_pred hhhcCcc
Confidence 5554443
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-10 Score=101.47 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC--C-CCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS--V-PKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~--~-p~~-D~i~ 253 (353)
.++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+. . ++. |+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999998777789999999 777776543 36899999998762 2 233 9999
Q ss_pred eccccccCCchH--HHHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+....+..+... ...++++++++|+|||.+++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 965543322111 2578999999999999998863
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-10 Score=103.55 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCC--C-CCC-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQS--V-PKG-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~--~-p~~-D~i 252 (353)
+++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. . ++. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 677765542 36899999998762 2 233 999
Q ss_pred Eecccccc---CCchH--HHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILHD---WDDEH--CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh~---~~~~~--~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++....|. -+... ...++++++++|+|||.+++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99876654 11111 36899999999999999998743
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-10 Score=103.76 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=76.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~-~-D~ 251 (353)
..++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+. . |+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 34678999999999999999999888889999999 777776653 25899999998652 333 3 99
Q ss_pred EEeccccccCCchH--HHHHHHHHHHhCCCCCEEEEE
Q 018576 252 IFLKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 252 i~~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~ 286 (353)
|++....+....+. ...++++++++|+|||.|++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865422111111 368999999999999999986
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-10 Score=98.58 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC-----CC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP-----KG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~~- 249 (353)
..++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34578999999999999999999987 789999998 7777766542 5899999998652 21 33
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99998643 2345689999999999999999877553
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-10 Score=102.50 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC--CCC-CC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ--SVP-KG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~~p-~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +.. +. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 777776653 3689999999865 222 33 9999
Q ss_pred eccccccCCch--HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 254 LKWILHDWDDE--HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 254 ~~~~Lh~~~~~--~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+....+..+.. ....++++++++|+|||.+++...
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 86554422111 124789999999999999998653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=93.41 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=75.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCC-CC-C-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSV-PK-G-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~-p~-~-D~ 251 (353)
..+..+|||||||+|..+..+++.+ |..+++++|. +.+++.+++ .++++++.+|+.... +. . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456899999999999999999986 6679999998 777776653 247999999987632 23 3 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|++...++++. +++.+.|+|||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99998887653 5678899999999997653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=92.39 Aligned_cols=95 Identities=8% Similarity=0.010 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
..+.+|||||||+|-++..+. |..+++++|+ +.+++.+++. .+.++...|... +.|.. |++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 557899999999999999887 8999999999 7788777653 567899999988 55554 99999999999
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+.+++....+ ++.+.|++++.++-..
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 8766655555 8999999987766555
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-10 Score=98.56 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---C------CCC-
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---V------PKG- 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~------p~~- 249 (353)
.++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++. ++++++.+|..+. + +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4578999999999999999999987 789999999 7777766542 4799999998752 2 233
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++... ......+++++.+.|+|||.+++.+...
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99987632 3446789999999999999998766543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-10 Score=102.56 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCCC---CCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQSV---PKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~---p~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+.+ ++. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4568999999999999999999878899999999 777776543 257999999987622 233 9999
Q ss_pred eccccccCCchHH--HHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e 287 (353)
+...-+.-++... ..++++++++|+|||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8654332122211 689999999999999999865
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-10 Score=100.36 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC----------------CCCCeeEEeCCCCCCC--CCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP----------------LHPHIEHVAGDMFQSV--PKG 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~rv~~~~~d~~~~~--p~~ 249 (353)
.++.+|||||||+|.++..+++. |..+++++|+ +.+++.++ ..++++++.+|..+.. ++.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45689999999999999999998 8889999999 77776543 2367999999986521 334
Q ss_pred -cEEEeccccccCCchH--HHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILHDWDDEH--CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~--~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++....+..+... ...++++++++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999876543222122 2688999999999999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=100.04 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=78.3
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC-----------------CCCeeEEe
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL-----------------HPHIEHVA 239 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~rv~~~~ 239 (353)
..++..+. ..++.+|||||||+|.++..+++. .|+.+++++|. +.+++.+++ .++++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667889999999999999999998 47789999998 667766543 25799999
Q ss_pred CCCCCC---CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 240 GDMFQS---VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 240 ~d~~~~---~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+|+.+. ++.+ |+|++... +. ..++++++++|+|||++++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NP--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----ST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-----CH--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 999873 3443 99998532 11 23799999999999999987764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-10 Score=99.00 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC-----CC-c
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP-----KG-D 250 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-----~~-D 250 (353)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. ++ .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3467999999999999999999987 789999999 7777776542 4799999997541 21 33 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+|++... ......+++++.+.|+|||.+++.+...
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 9987654 2445789999999999999999877654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-10 Score=102.56 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .++. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878899999999 777766542 25799999998762 2333 9999
Q ss_pred eccccccCCchHH--HHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDEHC--LKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~~~--~~~L~~~~~~L~pgG~l~i~e 287 (353)
+...-+.-+.... .+++++++++|+|||.+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8653221111211 689999999999999999864
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-10 Score=108.53 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC---CCCCC--cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ---SVPKG--DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~---~~p~~--D~i~~~~ 256 (353)
..+.+|||||||+|.++..+++. +.+++|+|. +.+++.|+.+ -+++|.++++.+ ..+.+ |+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999997 679999999 7788777643 358999998865 23333 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
+|||.+++....-+.++.+.|+++++.++......+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998776555566788888888887777765444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-10 Score=98.96 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=79.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC-CCCC-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS-VPKG-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~-~p~~-D~i~~~~~L 258 (353)
+.+..+|||+|||+|.++..+++..+..+++++|. +.+++.++++ +++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999998889999999 7788776542 5789999999874 2223 999987654
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
....+++++.+.|+|||.+++.....
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 23578999999999999999887754
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=90.47 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=67.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCCCCCCC-cEEEeccccccCCch
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDE 264 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~~~ 264 (353)
..++.+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .+++++.+|+.+ +|.. |+|++...+|++.+.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999987 5568999999 7788877654 379999999876 4444 999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 018576 265 HCLKLLKNCYKSV 277 (353)
Q Consensus 265 ~~~~~L~~~~~~L 277 (353)
...++++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 4568899999998
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-10 Score=99.62 Aligned_cols=99 Identities=23% Similarity=0.261 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC--C-CCC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS--V-PKG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~--~-p~~-D~i~ 253 (353)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. . ++. |+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3468999999999999999999878889999999 777766543 36899999998652 2 233 9999
Q ss_pred eccccccCCch---HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 254 LKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 254 ~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+...-+..... ...+++++++++|+|||.+++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 75432201110 12588999999999999999863
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.90 E-value=9.9e-10 Score=97.98 Aligned_cols=103 Identities=15% Similarity=0.232 Sum_probs=76.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~ 248 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345666666 6677899999999999999999984 48999998 6777665432 479999999987 6664
Q ss_pred CcEEEeccccccCCchHHHHHHH--------------HH--HHhCCCCCEEE
Q 018576 249 GDAIFLKWILHDWDDEHCLKLLK--------------NC--YKSVPEDGKVI 284 (353)
Q Consensus 249 ~D~i~~~~~Lh~~~~~~~~~~L~--------------~~--~~~L~pgG~l~ 284 (353)
-|+|+++... +|+.+....+|. ++ +++++|||+++
T Consensus 94 fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 5999886554 355554555553 22 46999999653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=93.68 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCCCCCCC-cEEEecc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQSVPKG-DAIFLKW 256 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~~~p~~-D~i~~~~ 256 (353)
+++.+|||||||+|..+..+++. + .+++++|+ +.+++.++++ +|++++.+|..+.. +. |+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECC
Confidence 45689999999999999999998 7 89999999 7888888763 47999999987633 44 9999862
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+++. .++++++++|+|||.+++..
T Consensus 148 -----~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChH--HHHHHHHHhcCCCcEEEEEc
Confidence 2332 48999999999999999863
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-09 Score=98.39 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCC-CCCCC-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~ 260 (353)
++..|||||||+|.+++..++. ...+++++|.+++++.|++ .++|.++.+|+.+ .+|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 4679999999999988766664 3458999998666666554 2689999999988 77766 99988433322
Q ss_pred CC-chHHHHHHHHHHHhCCCCCEEEE
Q 018576 261 WD-DEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 261 ~~-~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+. +.....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 33467888888999999998874
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-09 Score=93.16 Aligned_cols=116 Identities=10% Similarity=0.044 Sum_probs=82.3
Q ss_pred cCCCCeEEEEcC------CchHHHHHHHHHCC-CCeEEEecchHHHhhCCCCCCeeE-EeCCCCC-CCCCC-cEEEeccc
Q 018576 188 FANIKQLVDVGG------NLGVTLQAITSKYP-YIKGINFDQPHVIEHAPLHPHIEH-VAGDMFQ-SVPKG-DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~rv~~-~~~d~~~-~~p~~-D~i~~~~~ 257 (353)
+.++.+|||||| |+|. ..+++..| +.+++++|+.+.+ +++++ +++|+.+ +.+.. |+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 567789999999 5577 55566776 6899999994431 47899 9999987 44444 99998643
Q ss_pred ccc--------C-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHH
Q 018576 258 LHD--------W-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 258 Lh~--------~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 328 (353)
.+. . .......+|++++++|||||++++...... ...++.++
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~~ 183 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYKL 183 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHHH
Confidence 221 0 012356899999999999999998643210 11366777
Q ss_pred HHhcCCceeeEe
Q 018576 329 ATGAGFSGIRSD 340 (353)
Q Consensus 329 l~~aGf~~v~~~ 340 (353)
+++.||..+++.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888888776665
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-08 Score=84.21 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=70.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----C-CeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----P-HIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
..++.+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ . +++++.+|+.+ ++.. |+|++...+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcc
Confidence 3456899999999999999999873 348999999 7777766543 2 79999999876 3434 99999999888
Q ss_pred CCchHHHHHHHHHHHhC
Q 018576 261 WDDEHCLKLLKNCYKSV 277 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L 277 (353)
+......++++++.+.+
T Consensus 125 ~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS 141 (207)
T ss_dssp SSTTTTHHHHHHHHHHC
T ss_pred ccCCchHHHHHHHHHhc
Confidence 76555568899999998
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=96.31 Aligned_cols=105 Identities=12% Similarity=0.104 Sum_probs=78.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCC-CC-cEEEec
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVP-KG-DAIFLK 255 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~-D~i~~~ 255 (353)
.+++.+. .....+|||+|||+|.++..+++.+ +..+++++|+ +.+++.+ .+++++++|+.+..+ .. |+|+++
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~N 105 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 105 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEEC
Confidence 3444444 3445699999999999999999987 6789999999 6677666 689999999987433 34 999996
Q ss_pred ccccc----------CCchH-----------------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHD----------WDDEH-----------------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~----------~~~~~-----------------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-.... ++++. ...+++++.+.|+|||+++++.+
T Consensus 106 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 106 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 33221 21221 12679999999999999998775
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-08 Score=89.91 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=95.6
Q ss_pred CCeEEEEcCCchHHHHHH--------HHHC-------CCCeEEEecchHH--------HhhCCC-------------CCC
Q 018576 191 IKQLVDVGGNLGVTLQAI--------TSKY-------PYIKGINFDQPHV--------IEHAPL-------------HPH 234 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a~~-------------~~r 234 (353)
..+|+|+|||+|..+..+ .+++ |.+++..-|+|.- +...++ .+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999988876 3333 7889999998521 222211 011
Q ss_pred -eeEEeCCCCC-CCCCC--cEEEeccccccCCch------------------------------------HHHHHHHHHH
Q 018576 235 -IEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDE------------------------------------HCLKLLKNCY 274 (353)
Q Consensus 235 -v~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~------------------------------------~~~~~L~~~~ 274 (353)
+.-+.+.|.. .+|.+ |+|+++.+||.+++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346678877 78876 999999999987621 3345799999
Q ss_pred HhCCCCCEEEEEeeecCCCCCCcccccccccc-ch----hh-hhh-----------C-CCCcccCHHHHHHHHH-hcCCc
Q 018576 275 KSVPEDGKVIVVELMLPEVPNTSIESKSNSHI-DV----LM-MTQ-----------N-PGGKERTKHEFMTLAT-GAGFS 335 (353)
Q Consensus 275 ~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~----~~-~~~-----------~-~~g~~~t~~~~~~ll~-~aGf~ 335 (353)
+.|+|||++++.-...++........ ..... +. +. +.. + .--..++.+|++++++ +.||+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~-~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGG-AGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHH-HHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccc-hhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 99999999999888765421111000 00000 11 10 000 0 0112368999999998 58999
Q ss_pred eeeEee
Q 018576 336 GIRSDL 341 (353)
Q Consensus 336 ~v~~~~ 341 (353)
+.++..
T Consensus 292 I~~le~ 297 (374)
T 3b5i_A 292 IDKLVV 297 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 876543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-09 Score=94.57 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=76.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC-----CCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV-----PKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~-----p~~-D~i 252 (353)
..++.+|||+|||+|..+..+++..++ .+++++|. +.+++.++++ .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 456789999999999999999999876 89999998 6667665442 479999999876 32 333 999
Q ss_pred Eecc------cccc---CCc-------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 253 FLKW------ILHD---WDD-------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 253 ~~~~------~Lh~---~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++.- +++. |+. ....++|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 8862 2221 111 123689999999999999999887654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-09 Score=98.51 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CC-CC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VP-KG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p-~~-D~i~~ 254 (353)
..++.+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .+++++.+|+.+ + ++ .. |+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999877 89999998 6666655432 579999999977 3 44 33 99986
Q ss_pred ------ccccccCCch-------HH-------HHHHHHHHHhCCCCCEEEEEeeec
Q 018576 255 ------KWILHDWDDE-------HC-------LKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ------~~~Lh~~~~~-------~~-------~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+++..++. +. .++|+++.+.|+|||+|++.+...
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3445543332 11 578999999999999999988654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=94.12 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=89.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC-C-cEEEecc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK-G-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~-D~i~~~~ 256 (353)
+.++.+|||+|||+|.++..++...+..+++++|+ +.+++.|+++ +++++..+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45678999999999999999999987779999999 7788877653 479999999988 5553 3 9999976
Q ss_pred ccccCC------chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 257 ILHDWD------DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 257 ~Lh~~~------~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
.++... ..-..++++.++++| +|.++++.. +.+.+.+.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 544321 111267889999988 555555432 2345667888
Q ss_pred hcCCceeeEeee
Q 018576 331 GAGFSGIRSDLV 342 (353)
Q Consensus 331 ~aGf~~v~~~~~ 342 (353)
+.||+..+...+
T Consensus 341 ~~G~~~~~~~~~ 352 (373)
T 3tm4_A 341 ENGFEIIHHRVI 352 (373)
T ss_dssp HTTEEEEEEEEE
T ss_pred HcCCEEEEEEEE
Confidence 899998877665
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-09 Score=90.43 Aligned_cols=103 Identities=10% Similarity=0.168 Sum_probs=72.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC-c
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~-D 250 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +++.+ +
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 345666565 6677899999999999999999986 68999999 677766543 3689999999988 66643 4
Q ss_pred EEEeccccccCCchHHHHHH--------------HHHHHhCCCCCEE
Q 018576 251 AIFLKWILHDWDDEHCLKLL--------------KNCYKSVPEDGKV 283 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L--------------~~~~~~L~pgG~l 283 (353)
..++.+.-++++.+-..+++ ..+.+.++|+|++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l 142 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL 142 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence 44555554444443333443 2366677777644
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.7e-09 Score=96.24 Aligned_cols=100 Identities=9% Similarity=0.131 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCC-CC-cEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPY-----IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVP-KG-DAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p-~~-D~i~~~ 255 (353)
....+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.. .++.++.+|.+.+.+ .. |+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35689999999999999999988764 68999999 6777766542 368999999988544 33 999999
Q ss_pred cccccCCchHH----------------HHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHDWDDEHC----------------LKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~~~~----------------~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88776654432 2689999999999999998774
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-09 Score=94.01 Aligned_cols=107 Identities=8% Similarity=0.144 Sum_probs=78.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCC-Cc
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPK-GD 250 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~-~D 250 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +++. +.
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 345666666 6677899999999999999999985 78999999 7788877764 579999999988 6653 33
Q ss_pred EEEeccccccCCchHHHHHH--------------HHHHHhCCCCCEEEEEe
Q 018576 251 AIFLKWILHDWDDEHCLKLL--------------KNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L--------------~~~~~~L~pgG~l~i~e 287 (353)
.++..+.-++.+......++ +.+.+.|+|||++.++.
T Consensus 95 f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 95 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 34444444444433333443 56899999999887644
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.1e-08 Score=88.45 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC--cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG--DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~--D~i~~~~~L 258 (353)
.++.+|||+|||+|.+++.+++. +..+++++|+ |.+++.+++ .++|.++++|..+-.+++ |.|++...-
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~ 202 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence 46789999999999999999886 4568999999 777766654 267999999998733333 998876432
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
. ...+|..+.+.|+|||.|.+.+...... ......+.++++.++.|+++
T Consensus 203 ~------~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 203 R------THEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp S------GGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEE
T ss_pred c------HHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcE
Confidence 1 2467888889999999998877653221 01123567788889999875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-08 Score=91.18 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------C-CeeEEeCCCCCCC------CCC-cEEE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------P-HIEHVAGDMFQSV------PKG-DAIF 253 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-rv~~~~~d~~~~~------p~~-D~i~ 253 (353)
++.+|||+|||+|.++..+++.. .+++++|. +.+++.++++ + +++++++|+++.. ... |+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999864 39999999 7778776642 2 5999999997722 223 9999
Q ss_pred eccc----------cccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 254 LKWI----------LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 254 ~~~~----------Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+.-. ++. .+....+++++.+.|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 8432 111 234578999999999999998776643
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=93.69 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=78.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-C--CCC-C-cEEEe--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-S--VPK-G-DAIFL-- 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~--~p~-~-D~i~~-- 254 (353)
..++.+|||+|||+|..+..+++..|+.+++++|. +..++.++++ -+++++.+|+.+ + ++. . |+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 55678999999999999999999998899999998 5556555432 258899999987 3 343 3 99986
Q ss_pred ----ccccccCCch-------HH-------HHHHHHHHHhCCCCCEEEEEeeec
Q 018576 255 ----KWILHDWDDE-------HC-------LKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ----~~~Lh~~~~~-------~~-------~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
..+++..++. +. .++|+++.+.|+|||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2344443321 11 488999999999999999988654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=95.79 Aligned_cols=102 Identities=8% Similarity=0.042 Sum_probs=77.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.++++ . +.++.+|+.+ + .+.. |+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999999865 79999999 6677766542 4 8899999876 2 2334 999861
Q ss_pred -------------cccccCCchHH-------HHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 -------------WILHDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 -------------~~Lh~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.....|+.+.+ .++|+++.+.|||||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 22223333332 689999999999999999877543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=90.01 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=70.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~ 249 (353)
...+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.-
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345555555 667789999999999999999987 468999999 777776653 2689999999987 55444
Q ss_pred cEEEeccccccCCchHHHHHH---------------HHHHHhCCCCC
Q 018576 250 DAIFLKWILHDWDDEHCLKLL---------------KNCYKSVPEDG 281 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L---------------~~~~~~L~pgG 281 (353)
|+|+++... +++.+...++| ..+.+.++|+|
T Consensus 108 D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 999986554 46666566666 34678888876
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.7e-08 Score=92.56 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC-cEEEec--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG-DAIFLK-- 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~-D~i~~~-- 255 (353)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .++.++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999885 579999998 6677666542 579999999987 3 3344 999872
Q ss_pred ----ccc-------ccCCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 ----WIL-------HDWDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ----~~L-------h~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.++ +.|+.+. ..++|+++.++|||||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 222 2343222 2478999999999999999887644
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-07 Score=82.53 Aligned_cols=151 Identities=14% Similarity=0.047 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHH----------------CCCCeEEEecchH--HHhhCCCC------CC---eeEEeCC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSK----------------YPYIKGINFDQPH--VIEHAPLH------PH---IEHVAGD 241 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~--~~~~a~~~------~r---v~~~~~d 241 (353)
++..+|+|+||++|..+..+... .|..+++.-|+|. --...+.. .+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 35579999999999876654433 4678889999852 11111111 12 2335678
Q ss_pred CCC-CCCCC--cEEEeccccccCCch-------------------------------HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 242 MFQ-SVPKG--DAIFLKWILHDWDDE-------------------------------HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 242 ~~~-~~p~~--D~i~~~~~Lh~~~~~-------------------------------~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|.. .+|.+ |+++++.+||.+++. +...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 887 78876 999999999987641 22356999999999999999988
Q ss_pred eecCCCCCCcc-----ccc-cccccchhhhh---------hCCCCcccCHHHHHHHHHhcC-CceeeE
Q 018576 288 LMLPEVPNTSI-----ESK-SNSHIDVLMMT---------QNPGGKERTKHEFMTLATGAG-FSGIRS 339 (353)
Q Consensus 288 ~~~~~~~~~~~-----~~~-~~~~~~~~~~~---------~~~~g~~~t~~~~~~ll~~aG-f~~v~~ 339 (353)
...+....... ... ...+.++.... ...--..++.+|++.++++.| |++.+.
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 87654311100 000 00111110000 000112468999999999996 466554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=86.91 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=93.0
Q ss_pred CCeEEEEcCCchHHHHHHHHH-----------------CCCCeEEEecch-----------H-HHhhC----CCCCCee-
Q 018576 191 IKQLVDVGGNLGVTLQAITSK-----------------YPYIKGINFDQP-----------H-VIEHA----PLHPHIE- 236 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~-~~~~a----~~~~rv~- 236 (353)
..+|+|+||++|..+..+... .|.++++.-|+| + ..+.. ....+-.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999998877765 477888999986 1 11111 1111223
Q ss_pred --EEeCCCCC-CCCCC--cEEEeccccccCCchH-------------------------H------------HHHHHHHH
Q 018576 237 --HVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH-------------------------C------------LKLLKNCY 274 (353)
Q Consensus 237 --~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~-------------------------~------------~~~L~~~~ 274 (353)
-+++.|.. .+|.+ |+|+++.+||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777 78876 9999999999876321 1 12377779
Q ss_pred HhCCCCCEEEEEeeecCCC--CCCccccccccccchhh--------hhhC-CCCcccCHHHHHHHHHhcC-CceeeEe
Q 018576 275 KSVPEDGKVIVVELMLPEV--PNTSIESKSNSHIDVLM--------MTQN-PGGKERTKHEFMTLATGAG-FSGIRSD 340 (353)
Q Consensus 275 ~~L~pgG~l~i~e~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~-~~g~~~t~~~~~~ll~~aG-f~~v~~~ 340 (353)
+.|+|||++++.-...+.. ...........+.++.. +..+ .--..++.+|++.+++++| |++.++.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999988876543 11100000011111100 0001 0122368999999999985 7876653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-08 Score=92.70 Aligned_cols=103 Identities=11% Similarity=0.109 Sum_probs=76.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-C--CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-S--VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~--~p~~-D~i~~~ 255 (353)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ .++.++.+|..+ + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998764 79999999 6667665542 568999999865 2 3344 999874
Q ss_pred c------cccc-------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 W------ILHD-------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 ~------~Lh~-------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
- ++.. |+.+. ..++|+++.+.|||||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2221 22111 1388999999999999999877654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-07 Score=79.95 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCCCC--cE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVPKG--DA 251 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~--D~ 251 (353)
...+++.+. ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ ++++. +.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 345666666 667789999999999999999987 5579999999 7788777654 579999999988 66542 55
Q ss_pred EEeccccccCCchHHHHHH
Q 018576 252 IFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L 270 (353)
+++.+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666555443333333
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-08 Score=91.01 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCC------CCC-cEEEec
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSV------PKG-DAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~------p~~-D~i~~~ 255 (353)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.++++ ++++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 568999999 7777776542 45999999987622 223 999985
Q ss_pred cccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
-..+..+. .....+++++.+.|+|||.|++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43222211 3356899999999999999998765
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.51 E-value=6.3e-08 Score=91.81 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=80.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEEecc-hHHHhhCCCC------C--Ce
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-------------PYIKGINFDQ-PHVIEHAPLH------P--HI 235 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--rv 235 (353)
+..+++.+. .....+|+|.|||+|.++..+.+.. +..+++|+|+ +.+++.|+.. . ++
T Consensus 160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 334444444 4556799999999999999988764 4568999998 6676665431 2 67
Q ss_pred eEEeCCCCC-CCCCC-cEEEeccccccCCch---------------HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 236 EHVAGDMFQ-SVPKG-DAIFLKWILHDWDDE---------------HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 236 ~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~---------------~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++.++|.+. +.... |+|+++-.++..... .-..++.++.+.|+|||+++++.+
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 899999987 43334 999998766543211 124789999999999999998875
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.6e-08 Score=91.39 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCC------CCC-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSV------PKG-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~------p~~-D~i~~ 254 (353)
++.+|||+|||+|.++..+++. +..+++++|. +.+++.++++ ++++++.+|+++.. ... |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999986 4458999999 7777766542 27999999987622 223 99998
Q ss_pred ccccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 255 KWILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 255 ~~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
.-..+..+. .....++.++.+.|+|||.+++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 543322211 34568999999999999999887753
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=86.74 Aligned_cols=110 Identities=11% Similarity=-0.008 Sum_probs=79.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--------------------------------------IKGIN 219 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (353)
+..++.... +.+...|||.+||+|.++++.+....+ .++++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 344555444 777889999999999999988875433 56999
Q ss_pred ecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccccc-CC-chHHHHHHHHHHHhCCC--CCEEEE
Q 018576 220 FDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD-WD-DEHCLKLLKNCYKSVPE--DGKVIV 285 (353)
Q Consensus 220 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~-~~-~~~~~~~L~~~~~~L~p--gG~l~i 285 (353)
+|. +.+++.|+++ +++++.++|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++ |+.+++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 348 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV 348 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence 999 7788777642 469999999987 44444 99999844322 11 23455667766666665 899888
Q ss_pred Eee
Q 018576 286 VEL 288 (353)
Q Consensus 286 ~e~ 288 (353)
+..
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-07 Score=79.80 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=63.3
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCCC--
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~-- 249 (353)
...+++.+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.++++ ++++++.+|+.+ +++..
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 445666666 667789999999999999999998 568999998 7777776653 789999999998 67653
Q ss_pred cEEEeccccc
Q 018576 250 DAIFLKWILH 259 (353)
Q Consensus 250 D~i~~~~~Lh 259 (353)
|+|+++...+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9998775544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-07 Score=86.91 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC-cEEEeccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG-DAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh 259 (353)
.++.+|||+|||+|.++.. ++ ...+++++|. +.+++.++++ ++++++.+|+++.. .. |+|++...-+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEECCcHh
Confidence 4578999999999999999 77 4779999999 7777766542 57999999998743 43 9999853211
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
...+++.+.+.|+|||.+++.+..
T Consensus 270 ------~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 270 ------AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ------HHHHHHHHHHHcCCCCEEEEEEee
Confidence 237899999999999999998764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-07 Score=78.31 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=72.6
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HHHhhCCCC----CCeeEEeCCCCC-CCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HVIEHAPLH----PHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~rv~~~~~d~~~-~~p 247 (353)
+...+.++.+... +....+|||+|||+|.++...++..+..+++++|+. +........ .++.+...++.. .++
T Consensus 59 aA~KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~ 137 (277)
T 3evf_A 59 GTAKLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLE 137 (277)
T ss_dssp HHHHHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcC
Confidence 3344566666644 677789999999999999998887665566667763 111111111 134444554422 344
Q ss_pred C-C-cEEEeccccc---cCCch-HHHHHHHHHHHhCCCC-CEEEEEeeec
Q 018576 248 K-G-DAIFLKWILH---DWDDE-HCLKLLKNCYKSVPED-GKVIVVELML 290 (353)
Q Consensus 248 ~-~-D~i~~~~~Lh---~~~~~-~~~~~L~~~~~~L~pg-G~l~i~e~~~ 290 (353)
. . |+|++....+ .+.|. ....+|+.+.+.|+|| |.+++ ..+.
T Consensus 138 ~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~ 186 (277)
T 3evf_A 138 PVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA 186 (277)
T ss_dssp CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred CCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence 3 3 9999987665 11122 2235689999999999 99988 4443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.7e-07 Score=83.25 Aligned_cols=110 Identities=11% Similarity=-0.027 Sum_probs=81.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--------------------------------------IKGIN 219 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (353)
+..++.... +.+...|||.+||+|.++++.+....+ .++++
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 444555444 777889999999999999988865433 56999
Q ss_pred ecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccccc-CC-chHHHHHHHHHHHhCCC--CCEEEE
Q 018576 220 FDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD-WD-DEHCLKLLKNCYKSVPE--DGKVIV 285 (353)
Q Consensus 220 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~-~~-~~~~~~~L~~~~~~L~p--gG~l~i 285 (353)
+|. +.+++.|+++ +++++.++|+.+ +.+.. |+|+++--.+. +. ..+...+.+.+.+.|++ |++++|
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 341 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI 341 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 999 7788777652 469999999987 44444 99999854432 22 35567788888888876 999988
Q ss_pred Eee
Q 018576 286 VEL 288 (353)
Q Consensus 286 ~e~ 288 (353)
+..
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 765
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7.8e-07 Score=80.70 Aligned_cols=141 Identities=12% Similarity=0.143 Sum_probs=103.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------------------------CCCeeEEeCCC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------------------------HPHIEHVAGDM 242 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~rv~~~~~d~ 242 (353)
+..+|+.+|||.......+...+|+++++-+|.|++++..++ .++++++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 468999999999999999999888999999999988764432 15799999999
Q ss_pred CC-CC---------C-CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc--ch
Q 018576 243 FQ-SV---------P-KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI--DV 308 (353)
Q Consensus 243 ~~-~~---------p-~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~--~~ 308 (353)
.+ .+ . .. .++++-.+|++++.+++.++|+.+.+.. |+|.+++.|.+.+..+.. .+...+ .+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~----~fg~~m~~~l 251 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPND----RFGAIMQSNL 251 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTC----CHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcc----hHHHHHHHHh
Confidence 87 32 1 12 7889999999999999999999999987 788888899887632211 111111 00
Q ss_pred hh-h-hhCCC-CcccCHHHHHHHHHhcCCc
Q 018576 309 LM-M-TQNPG-GKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 309 ~~-~-~~~~~-g~~~t~~~~~~ll~~aGf~ 335 (353)
.. . ....+ ....+.++..+.|.++||+
T Consensus 252 ~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 252 KESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 00 0 00111 2345888999999999997
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=81.69 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=68.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCC-----
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVP----- 247 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p----- 247 (353)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ ++++|+.+|+.+.++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence 4444444 556689999999999999999987 679999999 7788776542 579999999987322
Q ss_pred C-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 248 K-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 248 ~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
. . |+|++.---.. +..+++.+.+ ++|++.+++
T Consensus 354 ~~~fD~Vv~dPPr~g-----~~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 354 KNGFDKVLLDPARAG-----AAGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp TTCCSEEEECCCTTC-----CHHHHHHHHH-HCCSEEEEE
T ss_pred cCCCCEEEECCCCcc-----HHHHHHHHHh-cCCCeEEEE
Confidence 2 3 99998533322 2245555543 678776665
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-07 Score=86.10 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCC---CCCC-cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQS---VPKG-DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~---~p~~-D~i~~~~~Lh 259 (353)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ -..++.++|+++. .+.. |+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 47899999999999999999973 45999999 7788777653 1235678898762 2333 9999864432
Q ss_pred cCCc-------hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 260 DWDD-------EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 260 ~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
..+. ....++++.+.+.|+|||.|++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 22358899999999999999977653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.7e-08 Score=89.06 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------C--CeeEEeCCCCCCCC------CC-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------P--HIEHVAGDMFQSVP------KG-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--rv~~~~~d~~~~~p------~~-D~i 252 (353)
.++.+|||+|||+|.++..+++.. ..+++++|. +.+++.|+++ + +++++++|+++..+ .. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 346799999999999999999853 348999998 7777766542 2 89999999876221 23 999
Q ss_pred Eeccccc-----cCC--chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILH-----DWD--DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh-----~~~--~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++.-... ... .....++++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9853321 111 12345688899999999999988654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-07 Score=79.31 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=64.6
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---CCCeeEEeCCCCC-CCCC--C-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---HPHIEHVAGDMFQ-SVPK--G-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~--~-D 250 (353)
..+++.+. ..+. +|||||||+|.++..+++.. .+++++|. +.+++.+++ ..+++++++|+.+ ++++ . |
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 45666665 6666 99999999999999999985 68999998 677776654 2689999999987 6653 2 5
Q ss_pred EEEeccccccCCchHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKN 272 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~ 272 (353)
.|+. +.-++.+.+-..++|..
T Consensus 113 ~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EECSSCCHHHHHHHHHH
T ss_pred EEEe-cCcccccHHHHHHHhcC
Confidence 5554 44555666555555544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.9e-07 Score=83.84 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=80.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--------------------------------------CeEEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--------------------------------------IKGIN 219 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 219 (353)
...++.... +.+..+|||.+||+|.++++++....+ .++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 344555444 777889999999999999998876322 57999
Q ss_pred ecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCC-cEEEecccccc-CC-chHHHHHHHHHHHhCCC--CCEEEE
Q 018576 220 FDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKG-DAIFLKWILHD-WD-DEHCLKLLKNCYKSVPE--DGKVIV 285 (353)
Q Consensus 220 ~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~-~~-~~~~~~~L~~~~~~L~p--gG~l~i 285 (353)
+|. +.+++.|+++ +++++.++|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++ |+.+.+
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 999 7888877653 369999999987 44444 99999755432 11 24456777777777776 888888
Q ss_pred Eee
Q 018576 286 VEL 288 (353)
Q Consensus 286 ~e~ 288 (353)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 765
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-07 Score=87.99 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------C-CeeEEeCCCCCCC------CCC-cEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------P-HIEHVAGDMFQSV------PKG-DAI 252 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-rv~~~~~d~~~~~------p~~-D~i 252 (353)
.++.+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ + +++++.+|+++.. +.. |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999864 458999999 6777766542 2 7899999987622 223 999
Q ss_pred EeccccccCC-------chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 253 FLKWILHDWD-------DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 253 ~~~~~Lh~~~-------~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
++.-.....+ ......++.++.+.|+|||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9864321110 13467899999999999999988664
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.7e-07 Score=78.41 Aligned_cols=90 Identities=9% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCC---
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPK--- 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~--- 248 (353)
...+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.++++ ++++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 345666665 6667899999999999999 64 444444999999 7888877654 479999999987 5432
Q ss_pred ---CcEEEeccccccCCchHHHHHH
Q 018576 249 ---GDAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 249 ---~D~i~~~~~Lh~~~~~~~~~~L 270 (353)
.+.++..+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2344444554455444333444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=81.36 Aligned_cols=90 Identities=17% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC-cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG-DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~ 260 (353)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ + ++++.+|+.+..+.. |+|++.-.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35679999999999999999986 458999998 7788777653 3 899999998744434 99998644322
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.. ..+++.+. .|+|+|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEE
T ss_pred hH----HHHHHHHH-hcCCCcEEEEE
Confidence 21 23555554 48999988875
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.1e-07 Score=90.78 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCC--C-CCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQS--V-PKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~--~-p~~-D~i~~~~ 256 (353)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ ++++++++|+++. . ... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46799999999999999998853 347999999 6777766542 3799999999872 2 223 9999854
Q ss_pred cccc--------CC-chHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 257 ILHD--------WD-DEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~--------~~-~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.... +. .....++++.+.+.|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 2211 11 23456889999999999999996553
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-07 Score=82.00 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=54.7
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC--CeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY--IKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p 247 (353)
..+++.+. ..+..+|||||||+|.++..+++..+. .+++++|+ +.+++.++++ ++++++++|+.+ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34566565 667789999999999999999998654 55999999 7788777654 689999999987 554
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.3e-07 Score=78.44 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=76.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCCCC---CC-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQSVP---KG-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p---~~-D~ 251 (353)
.+++.+||=||+|.|..+.++++..|-.+++.+|+ +.+++.+++ .+|++++.+|...-+. +. |+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 35688999999999999999998777778999999 778876654 3799999999987332 23 99
Q ss_pred EEeccccccCCch---HHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|+.-..= ..... --..+++.++++|+|||.++..-..
T Consensus 161 Ii~D~~d-p~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 161 IISDCTD-PIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EEESCCC-CCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEeCCC-cCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 8865321 11111 1247899999999999999986543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-07 Score=86.77 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=82.7
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhccc---cCCCCeEEEEcCCchHHHH---HHHHHC-CCCeEEEecchHH
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKG---FANIKQLVDVGGNLGVTLQ---AITSKY-PYIKGINFDQPHV 225 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~---~~~~~~vLDvG~G~G~~~~---~l~~~~-p~~~~~~~D~~~~ 225 (353)
|+-+++++-....|.+++.. .+.+..+. ..+...|+|||||+|-++. ..+++. -++++..++-+.+
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 55567777666666665532 33333321 2234689999999998844 333333 2347889998656
Q ss_pred HhhCCC-------CCCeeEEeCCCCC-CCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 226 IEHAPL-------HPHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 226 ~~~a~~-------~~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
...+++ .++|+++.+|+.+ ..|+. |+|++-..=..+..+-...+|....+.|||||.++
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 555544 2789999999999 78876 99987644333333345578888889999999764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.24 E-value=8.7e-07 Score=77.34 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=54.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVP 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p 247 (353)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345666665 6677899999999999999999874 68999998 777776654 3689999999988 554
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-06 Score=74.43 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=73.8
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecch-HHHhhCCC----CCCe-eEEeC-CCCCCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQP-HVIEHAPL----HPHI-EHVAG-DMFQSV 246 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~rv-~~~~~-d~~~~~ 246 (353)
+...+.++.+.+. +.+..+|||||||+|.++...++..+..+++++|+. .+...+.. ..++ .+... |+.. +
T Consensus 75 AAfKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l 152 (282)
T 3gcz_A 75 GSAKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-M 152 (282)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-S
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-c
Confidence 4455677777775 777889999999999999999987776778888872 22112221 1122 23322 4332 3
Q ss_pred C-CC-cEEEeccccc----cCCchHHHHHHHHHHHhCCCC--CEEEEEee
Q 018576 247 P-KG-DAIFLKWILH----DWDDEHCLKLLKNCYKSVPED--GKVIVVEL 288 (353)
Q Consensus 247 p-~~-D~i~~~~~Lh----~~~~~~~~~~L~~~~~~L~pg--G~l~i~e~ 288 (353)
+ .. |+|++-...+ ..+......+|.-+.+.|+|| |.+++--+
T Consensus 153 ~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 153 EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 3 23 9999987766 111112235788889999999 99887443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-06 Score=76.59 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=60.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-C--CC-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-S--VP- 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~--~p- 247 (353)
...+++.+. ..++.+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + ++
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345556565 56678999999999999999999999899999999 7788776542 589999999865 2 22
Q ss_pred ---CC-cEEEecc
Q 018576 248 ---KG-DAIFLKW 256 (353)
Q Consensus 248 ---~~-D~i~~~~ 256 (353)
.. |.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 23 8887754
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.5e-05 Score=67.44 Aligned_cols=145 Identities=12% Similarity=0.074 Sum_probs=101.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecchHHHhhCC-----------------------------CCCCeeEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQPHVIEHAP-----------------------------LHPHIEHVA 239 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~rv~~~~ 239 (353)
+..+|+-+|||.=.....+... .+++++.-+|.|++++..+ ..++.+++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999888888775 3678999999998876422 136789999
Q ss_pred CCCCC--CC---------CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc
Q 018576 240 GDMFQ--SV---------PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI 306 (353)
Q Consensus 240 ~d~~~--~~---------p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~ 306 (353)
.|+.+ .+ +.. -++++-.+|.+++.+++.++|+.+.+... +|.+++.|.+.+.++ +...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~-------fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDR-------FGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSH-------HHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCH-------HHHHH
Confidence 99976 11 212 68888899999999999999999998875 567777898865431 11111
Q ss_pred chhhhhh---CCC-CcccCHHHHHHHHHhcCCceeeEeee
Q 018576 307 DVLMMTQ---NPG-GKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 307 ~~~~~~~---~~~-g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
--++-.. ..+ ....+.++..+.|.++||+.+++..+
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 0000000 001 12357788899999999998877654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.05 E-value=6e-06 Score=80.61 Aligned_cols=125 Identities=13% Similarity=0.011 Sum_probs=77.1
Q ss_pred hhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-------------CCCeEEE
Q 018576 153 FEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-------------PYIKGIN 219 (353)
Q Consensus 153 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~ 219 (353)
|+-+.+++-....|.+++.. .+.+.+..-.+...|||||||+|-++...+++. ...++++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 44455555555555555432 222222211234689999999999964322211 2348899
Q ss_pred ecchH-HHhhCCC------CCCeeEEeCCCCC-CC------CCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEE
Q 018576 220 FDQPH-VIEHAPL------HPHIEHVAGDMFQ-SV------PKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVI 284 (353)
Q Consensus 220 ~D~~~-~~~~a~~------~~rv~~~~~d~~~-~~------p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~ 284 (353)
++-.. .+...+. .++|+++.+|+.+ .. |+. |+|++-..=.....+-...+|..+.+.|+|||.++
T Consensus 452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 99833 2222111 2679999999998 55 444 99988766443333435678888899999999755
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.5e-06 Score=71.81 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHH-------CCC-----CeEEEecc-h---HHHhhC-----------C------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSK-------YPY-----IKGINFDQ-P---HVIEHA-----------P------------ 230 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~------------ 230 (353)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 674 58899986 4 222211 1
Q ss_pred --------CCCCeeEEeCCCCCC---CCC----C-cEEEecc-ccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 231 --------LHPHIEHVAGDMFQS---VPK----G-DAIFLKW-ILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 231 --------~~~rv~~~~~d~~~~---~p~----~-D~i~~~~-~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
...+++++.+|+.+. .+. . |+|++-- .-..-++-.-..+|+.+++.|+|||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 113467889998652 332 3 9998842 21111110124789999999999999884
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.8e-05 Score=69.71 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=70.2
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCC-CCCC--cEEEeccccccCCch
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQS-VPKG--DAIFLKWILHDWDDE 264 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~p~~--D~i~~~~~Lh~~~~~ 264 (353)
+.++.++||+||++|+++..++++ +.+++++|..++-......++|.++.+|.+.. .+.+ |+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 356789999999999999999987 67999999855555555678999999999983 3333 9999987764 24
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 265 HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 265 ~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
....++.+.......++.++.+..
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 444555555555555555554443
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.6e-06 Score=70.86 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=67.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-h-------HHHhhCCCC-------CCeeEEeCCCCCC---CC--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-P-------HVIEHAPLH-------PHIEHVAGDMFQS---VP-- 247 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~rv~~~~~d~~~~---~p-- 247 (353)
..+..+|||+|||+|..+..+++. ..+++++|. + .+++.++++ .+++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445679999999999999999996 568999999 7 677766543 4699999998762 33
Q ss_pred -CC-cEEEeccccccCCc------------------hHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 248 -KG-DAIFLKWILHDWDD------------------EHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 248 -~~-D~i~~~~~Lh~~~~------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.. |+|++.-.+++-.. .+...+++.+.++.+ .+++|-.+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 33 99999765544211 123455666666654 3666665543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-05 Score=78.90 Aligned_cols=110 Identities=14% Similarity=0.014 Sum_probs=75.7
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHH------------------------------------------CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSK------------------------------------------YPYI 215 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------------------------------------------~p~~ 215 (353)
+..++.... +.+...|||.+||+|.++++.+.. .+..
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555444 677789999999999999987764 2346
Q ss_pred eEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCC--C-C-cEEEecccccc-C-CchHHHHHHHHHHHh---C
Q 018576 216 KGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVP--K-G-DAIFLKWILHD-W-DDEHCLKLLKNCYKS---V 277 (353)
Q Consensus 216 ~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p--~-~-D~i~~~~~Lh~-~-~~~~~~~~L~~~~~~---L 277 (353)
+++++|. +.+++.|+.+ +++++.++|+.+ ..| . . |+|+++--... + .+.+...+.+.+.+. +
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 7788777653 458999999986 223 2 3 99999844321 1 233445555554444 4
Q ss_pred CCCCEEEEEee
Q 018576 278 PEDGKVIVVEL 288 (353)
Q Consensus 278 ~pgG~l~i~e~ 288 (353)
.|||+++|+..
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 58999999865
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.6e-06 Score=77.70 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=63.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---CC-------------
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---VP------------- 247 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~p------------- 247 (353)
+.+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+. ++
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998853 58999998 7777766542 5799999998652 11
Q ss_pred --CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 248 --KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 248 --~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.. |+|++.---. .+..++.+.|+|+|+++.+..
T Consensus 292 ~~~~fD~Vv~dPPr~--------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS--------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECCCTT--------CCCHHHHHHHTTSSEEEEEES
T ss_pred ccCCCCEEEECcCcc--------ccHHHHHHHHhCCCEEEEEEC
Confidence 13 8887643211 233445566678999887754
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.3e-05 Score=74.07 Aligned_cols=92 Identities=16% Similarity=0.036 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------------------CCeeEEeCCCCCC--
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------------------PHIEHVAGDMFQS-- 245 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~rv~~~~~d~~~~-- 245 (353)
.+.+|||+|||+|..++.++++.+..+++++|. +..++.++++ .+++++.+|+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 368999999999999999999988889999998 6666554421 2388999998652
Q ss_pred -CCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 246 -VPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 246 -~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+.. |+|++.- .. . ...+|..+.+.|+|||.+++.-
T Consensus 127 ~~~~~fD~I~lDP-~~---~--~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG---S--PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS---C--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC---C--HHHHHHHHHHhcCCCCEEEEEe
Confidence 2333 9988542 21 1 2478999999999999777653
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=69.46 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=69.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CC--C--CC-cEEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SV--P--KG-DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~--p--~~-D~i~ 253 (353)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+++++.+|+.+ +. + .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5567899999999999999999985 5689999998 6666655432 579999999876 22 1 23 8888
Q ss_pred ec------ccccc---------CCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 254 LK------WILHD---------WDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~------~~Lh~---------~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
+. .++.. |+.+. -.++|+++.+.++ ||+|+......
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 62 12221 11111 1357888887776 89888766543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=1.1e-05 Score=77.98 Aligned_cols=108 Identities=11% Similarity=-0.001 Sum_probs=75.7
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC------------------CCeEEEecc-hHHHhhCCC------CCC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYP------------------YIKGINFDQ-PHVIEHAPL------HPH 234 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~r 234 (353)
.+++.+. .....+|+|.+||+|.++..+.+... ..+++|+|+ +.+++.|+. ...
T Consensus 160 ~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~ 238 (541)
T 2ar0_A 160 TIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 238 (541)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCc
Confidence 3444444 44567999999999999998876532 247899998 666665542 132
Q ss_pred -----eeEEeCCCCC-C-CCC-C-cEEEeccccccCCc------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 235 -----IEHVAGDMFQ-S-VPK-G-DAIFLKWILHDWDD------------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 235 -----v~~~~~d~~~-~-~p~-~-D~i~~~~~Lh~~~~------------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+.+..+|.+. + .+. . |+|+++-.+..... ..-..++.++.+.|+|||++.++-+
T Consensus 239 ~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 239 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 7899999887 3 222 3 99999865543211 1124789999999999999998854
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=8.9e-05 Score=64.78 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=70.6
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchH-HHhhCCC----CCC-eeEEeC-CCCCCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPH-VIEHAPL----HPH-IEHVAG-DMFQSV 246 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~r-v~~~~~-d~~~~~ 246 (353)
+...+.++.+. .-+.+..+|||+||++|.++..+++..+-..++++|+.. ....... ..+ +.+..+ |+..-.
T Consensus 66 aa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~ 144 (300)
T 3eld_A 66 GAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMP 144 (300)
T ss_dssp THHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecC
Confidence 33445566666 425677899999999999999999877666788888732 1111110 112 233333 444322
Q ss_pred CCC-cEEEeccccccCCc----h-HHHHHHHHHHHhCCCC-CEEEEEee
Q 018576 247 PKG-DAIFLKWILHDWDD----E-HCLKLLKNCYKSVPED-GKVIVVEL 288 (353)
Q Consensus 247 p~~-D~i~~~~~Lh~~~~----~-~~~~~L~~~~~~L~pg-G~l~i~e~ 288 (353)
+.. |+|++-..-+ -.. . ....+|.-+.+.|+|| |.+++--+
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 233 9999876655 221 1 1246688889999999 99988533
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.1e-05 Score=74.52 Aligned_cols=92 Identities=13% Similarity=0.023 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC-------CC-eeEEeCCCCCCC----CCC-cEEEe
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH-------PH-IEHVAGDMFQSV----PKG-DAIFL 254 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~r-v~~~~~d~~~~~----p~~-D~i~~ 254 (353)
++.+|||++||+|.+++.++.+.++ .+++++|. +..++.++++ ++ ++++.+|..+.. +.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998765 57999998 6667665542 34 999999986622 233 99988
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.- .. . ...++..+.+.|+|||.|++.-
T Consensus 132 DP--~g--~--~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FG--T--PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SS--C--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--Cc--C--HHHHHHHHHHHhCCCCEEEEEe
Confidence 65 11 1 1368899999999999777654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=61.75 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=68.0
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCe----EEEecchHHHhhCCCCCCe---eEEeC-CCCCC
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIK----GINFDQPHVIEHAPLHPHI---EHVAG-DMFQS 245 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~rv---~~~~~-d~~~~ 245 (353)
+.+.+.++.+.+- +.+..+|||+||+.|.++...++..+-.. ++++|+ +........+++ .|..+ |+++.
T Consensus 58 AayKL~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~ 135 (269)
T 2px2_A 58 GTAKLRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYK 135 (269)
T ss_dssp HHHHHHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGS
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCC
Confidence 3445667777763 78889999999999999999988621112 244442 111111111455 55557 99873
Q ss_pred CCCC-cEEEeccccc---cCCchH-HHHHHHHHHHhCCCCC-EEEEEee
Q 018576 246 VPKG-DAIFLKWILH---DWDDEH-CLKLLKNCYKSVPEDG-KVIVVEL 288 (353)
Q Consensus 246 ~p~~-D~i~~~~~Lh---~~~~~~-~~~~L~~~~~~L~pgG-~l~i~e~ 288 (353)
-+.. |+|++-..=. ...|+. ...+|.-+.+.|+||| .+++--+
T Consensus 136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 136 PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 3333 9998765331 111221 2236777789999999 7777433
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.1e-05 Score=74.89 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCC---------------CCeEEEecc-hHHHhhCCCC-------CC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYP---------------YIKGINFDQ-PHVIEHAPLH-------PH 234 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~r 234 (353)
+..+++.+. . ...+|+|.+||+|.++..+.+..+ ..++.|+|+ +.++..|+.. .+
T Consensus 234 v~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 444444444 2 234999999999999998765432 467899998 6666665431 23
Q ss_pred eeEEeCCCCC-C-CCC-C-cEEEecccccc--CCchH-------------------------HHHHHHHHHHhCCCCCEE
Q 018576 235 IEHVAGDMFQ-S-VPK-G-DAIFLKWILHD--WDDEH-------------------------CLKLLKNCYKSVPEDGKV 283 (353)
Q Consensus 235 v~~~~~d~~~-~-~p~-~-D~i~~~~~Lh~--~~~~~-------------------------~~~~L~~~~~~L~pgG~l 283 (353)
+.+..+|.+. + .+. . |+|+++--+.. |..+. --.++.++.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 5558888876 3 233 3 99999744432 32110 126899999999999999
Q ss_pred EEEee
Q 018576 284 IVVEL 288 (353)
Q Consensus 284 ~i~e~ 288 (353)
.++-+
T Consensus 392 aiVlP 396 (544)
T 3khk_A 392 ALLLA 396 (544)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88754
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0002 Score=71.05 Aligned_cols=100 Identities=9% Similarity=-0.004 Sum_probs=68.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC---CCeEEEecc-hHHHhhC--C----C----C--CCeeEEeCCCCCC--CCC-C
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP---YIKGINFDQ-PHVIEHA--P----L----H--PHIEHVAGDMFQS--VPK-G 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~rv~~~~~d~~~~--~p~-~ 249 (353)
....+|||.|||+|.++..+++..+ ..+++|+|+ +.+++.| + . + +...+...|+..+ .+. .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3567999999999999999999886 357899998 6566555 1 1 1 2235556666652 122 3
Q ss_pred -cEEEecccccc-CCchH--------------------------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 -DAIFLKWILHD-WDDEH--------------------------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 -D~i~~~~~Lh~-~~~~~--------------------------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|+++--.-. +.... ...++..+.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999755411 11111 23478889999999999998775
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00048 Score=57.96 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=75.4
Q ss_pred hhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhh----CCC--CCCeeEEeC-CCCCCCC
Q 018576 175 SLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEH----APL--HPHIEHVAG-DMFQSVP 247 (353)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~--~~rv~~~~~-d~~~~~p 247 (353)
.+.+.++.+.+. +....+|||+||++|.++...+......++.++|+-..-.. .+. -+-|+|+.+ |++.-.|
T Consensus 64 ~~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~ 142 (267)
T 3p8z_A 64 SAKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP 142 (267)
T ss_dssp HHHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC
Confidence 345667777775 77788999999999999998888876668999998322111 111 156999999 9765222
Q ss_pred C-CcEEEeccccccCCchH-----HHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 248 K-GDAIFLKWILHDWDDEH-----CLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 248 ~-~D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
. .|.|+|--.=.. +.+. ..++|.-+-+.|++ |.++| -.+.|.
T Consensus 143 ~~~DtllcDIgeSs-~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~py 190 (267)
T 3p8z_A 143 EKCDTLLCDIGESS-PSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNPY 190 (267)
T ss_dssp CCCSEEEECCCCCC-SCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCCC
T ss_pred ccccEEEEecCCCC-CChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccCC
Confidence 3 388877644321 1211 23477777889998 66666 444444
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00055 Score=53.36 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCch-HHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCC---CC-cEEEeccccccCC
Q 018576 189 ANIKQLVDVGGNLG-VTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVP---KG-DAIFLKWILHDWD 262 (353)
Q Consensus 189 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p---~~-D~i~~~~~Lh~~~ 262 (353)
..+.+|||||||.| ..+..|++. .+..++++|+ |..++ ++..|++++.. ++ |+|...+.
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsirP----- 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIRP----- 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEESC-----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcCC-----
Confidence 34679999999999 588888874 3688999998 44333 89999998655 24 99866654
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
..+....+.++.+.. |.-++|.....+
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~~E 125 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLTGE 125 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 344455566666543 577777665443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.6e-05 Score=69.49 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------------CCeeEEeCCCCCCC---C---C
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------------PHIEHVAGDMFQSV---P---K 248 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~~~---p---~ 248 (353)
++.+||=||+|.|..+.++++. |..+++.+|+ +.+++.+++. +|++++.+|...-+ + +
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999974 5578999999 7787766531 56899999986522 1 1
Q ss_pred C-cEEEecccccc-------CC-chHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHD-------WD-DEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~-------~~-~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|+.-..=.. .. ..-...+++.++++|+|||.++..-
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 2 98886532111 00 1113578999999999999998754
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=3.8e-05 Score=86.50 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCC-----CeEEEecc-hHHHhhCCCC---CCeeEEeCCCCCC---CCCC-cEEEecc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPY-----IKGINFDQ-PHVIEHAPLH---PHIEHVAGDMFQS---VPKG-DAIFLKW 256 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~---~p~~-D~i~~~~ 256 (353)
...+||+||+|+|..+..+++.... .+++..|. +...+.+++. -.+.....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 3579999999999887777666532 35788887 4445555543 1222222233222 2233 9999999
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
+||..++ ....|+++++.|+|||++++.|...... +.......-..........+.++|.++|.++||+.
T Consensus 1320 vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e~~~~~~--------~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLGD--PAVAVGNMAATLKEGGFLLLHTLLAGHP--------LGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred ccccccc--HHHHHHHHHHhcCCCcEEEEEecccccc--------ccccccccccccccCCcccCHHHHHHHHHhCCCce
Confidence 9997543 4688999999999999999988643110 00000000000000123356778999999999988
Q ss_pred eeEe
Q 018576 337 IRSD 340 (353)
Q Consensus 337 v~~~ 340 (353)
+...
T Consensus 1390 ~~~~ 1393 (2512)
T 2vz8_A 1390 VALK 1393 (2512)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0008 Score=58.55 Aligned_cols=114 Identities=11% Similarity=0.124 Sum_probs=74.1
Q ss_pred hhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHH-Hh---hCCCC--CCeeEEeC-CCCCCCC
Q 018576 175 SLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHV-IE---HAPLH--PHIEHVAG-DMFQSVP 247 (353)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~---~a~~~--~rv~~~~~-d~~~~~p 247 (353)
.+.+.++.+.+. +....+||||||++|.++...+....-.++.++|+-.. -+ ..++. .-|.++++ |++.--|
T Consensus 80 ~~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~ 158 (321)
T 3lkz_A 80 TAKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS 158 (321)
T ss_dssp HHHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC
Confidence 345667777765 67778999999999999998888776568999998221 00 11111 23888888 8766222
Q ss_pred C-CcEEEeccccccCCchH-----HHHHHHHHHHhCCCC-CEEEEEeeecC
Q 018576 248 K-GDAIFLKWILHDWDDEH-----CLKLLKNCYKSVPED-GKVIVVELMLP 291 (353)
Q Consensus 248 ~-~D~i~~~~~Lh~~~~~~-----~~~~L~~~~~~L~pg-G~l~i~e~~~~ 291 (353)
. .|+|+|--. ---+.+. ..++|.-+-+.|++| |.++| -.+.|
T Consensus 159 ~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVLCP 207 (321)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EESCT
T ss_pred CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEcCC
Confidence 3 388877654 2222222 124677778889988 77776 44444
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00043 Score=66.80 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHC---CCCeEEEecc-hHHHhhCCC------C--CCeeEEeCCCCC-CCC---C-C-cE
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKY---PYIKGINFDQ-PHVIEHAPL------H--PHIEHVAGDMFQ-SVP---K-G-DA 251 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~------~--~rv~~~~~d~~~-~~p---~-~-D~ 251 (353)
...+|+|.+||+|.++..+.+.. +..++.|+|+ +.++..|+. . +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 46799999999999999998885 3578999998 666665543 1 467899999987 433 2 2 99
Q ss_pred EEeccccc-cCCch--------------------HHHHHHHHHHHhCC-CCCEEEEEee
Q 018576 252 IFLKWILH-DWDDE--------------------HCLKLLKNCYKSVP-EDGKVIVVEL 288 (353)
Q Consensus 252 i~~~~~Lh-~~~~~--------------------~~~~~L~~~~~~L~-pgG~l~i~e~ 288 (353)
|+++--+. .|... .--.++.++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99873321 12100 01258999999999 9999988764
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=62.88 Aligned_cols=77 Identities=10% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHhccccCCC--CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHH-------HhhCCC-------C-CCeeEEeCCC
Q 018576 181 ILESYKGFANI--KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHV-------IEHAPL-------H-PHIEHVAGDM 242 (353)
Q Consensus 181 ~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~rv~~~~~d~ 242 (353)
+.+.+. ..++ .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. . .+++++++|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344443 4555 79999999999999999998 458999998 433 333221 1 4699999998
Q ss_pred CCC---CCCC-cEEEecccccc
Q 018576 243 FQS---VPKG-DAIFLKWILHD 260 (353)
Q Consensus 243 ~~~---~p~~-D~i~~~~~Lh~ 260 (353)
.+. +++. |+|++.-.++.
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 762 3334 99999877654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0013 Score=58.78 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecchHHHhhCCC---------CCCeeEEeCCCCCCCC----------CC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQPHVIEHAPL---------HPHIEHVAGDMFQSVP----------KG 249 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~p----------~~ 249 (353)
+..+||+||||-=.....+. .| +++++-+|.|.+++..++ .++.+++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 45789999999887755543 24 489999999988875432 3678899999875211 11
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccccccc-chh-hhh-----hCCCCcc-c
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHI-DVL-MMT-----QNPGGKE-R 320 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~g~~-~ 320 (353)
-++++-.+||++++++..++|+.+.+.+.||+.|++ |...++.. .. ........ ... ... ....... .
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-EW-REQMQLRFRRVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-HH-HHHHHHHHHHHHC-----------CCTTCC
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-ch-hHHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence 588888999999999999999999999999888765 44433321 00 00000000 000 000 0001111 2
Q ss_pred C-HHHHHHHHHhcCCcee
Q 018576 321 T-KHEFMTLATGAGFSGI 337 (353)
Q Consensus 321 t-~~~~~~ll~~aGf~~v 337 (353)
+ .++..++|.+.||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 6789999999999987
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=54.16 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=54.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhC--CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQL--PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNK 109 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~--~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~~ 109 (353)
.+..|+..|.+. |+.|+.+||+.+ ++ .+..+++.|+.|+..|+|+.. | .+.|.+|+.+..++...
T Consensus 14 ~d~~IL~~L~~~---g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~--rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 14 WDDRILEIIHEE---GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---A--NGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHH---SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---S--TTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---C--CceEEECchHHHHHHHH
Confidence 356788889775 499999999999 99 999999999999999999985 1 34899999998666543
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0009 Score=58.82 Aligned_cols=95 Identities=19% Similarity=0.109 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEecch----H-----------------------HHhhCCC-----
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY-----PYIKGINFDQP----H-----------------------VIEHAPL----- 231 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~----~-----------------------~~~~a~~----- 231 (353)
..+.+|||+|+..|..++.++... |+.+++++|.- + .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999998887654 47789999841 0 1111211
Q ss_pred ---CCCeeEEeCCCCCCC---CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 232 ---HPHIEHVAGDMFQSV---PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 232 ---~~rv~~~~~d~~~~~---p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.++|+++.||+.+-+ +.. |+|++-.-.+ +.....|..+...|+|||.+++=+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 268999999997633 322 7777764321 335688999999999999887644
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00013 Score=67.65 Aligned_cols=64 Identities=25% Similarity=0.419 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC----CC-cEEEec
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP----KG-DAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p----~~-D~i~~~ 255 (353)
.+.+|||+|||+|..+..+++. ..+++++|. +.+++.++.+ ++++++++|+.+.++ .. |+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 3689999999999999999887 469999998 7777766432 469999999987322 23 999984
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=49.31 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcC-cHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPT-MLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~-~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
.+-.|++.|... ||.|+.+||+.+|+ .+. .+++.|..|+..|+|.+. ..| .-.|.+|+.+..
T Consensus 12 ~~~~IL~~Lk~~---g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~-~~g--RP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ-GTT--PPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE-CSS--SCEEEECHHHHT
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec-CCC--CCCeEeCHhHHh
Confidence 456678888887 59999999999999 888 999999999999999976 233 348999988764
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00059 Score=50.24 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=50.2
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+|.--.++.|+..|.. +|.|+.|||+.+|+ .+..+.+.|+.|...|+|... ++|. ...|.+++
T Consensus 19 ~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~-~~g~-~~~y~l~~ 81 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE----GEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETR-RNIK-QIFYRLTE 81 (102)
T ss_dssp HHCSHHHHHHHHHHHT----CCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEE-CSSS-CCEEEECS
T ss_pred HcCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECc
Confidence 4444566777788866 48999999999999 899999999999999999987 3442 45677664
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0018 Score=53.97 Aligned_cols=87 Identities=7% Similarity=0.012 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------CCCeeEEeCCCCCC-------------
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------HPHIEHVAGDMFQS------------- 245 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~------------- 245 (353)
.+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 346799999985 56666666 45789999997 555554432 35799999996431
Q ss_pred -----------CC-CC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 246 -----------VP-KG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 246 -----------~p-~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+ .+ |+|++-.-- ....+..+.+.|+|||.|++
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEE
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEE
Confidence 12 12 998877521 23566667899999999854
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00079 Score=47.20 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=50.5
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
-.+..|++.|...+|+.+.|+.+||+.+|+ ...-+++.|..|...|++... ++ ....|.+.+...
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~--g~-~~~~W~i~~~~~ 74 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE--AG-TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--SS-SSCEEEEC----
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec--CC-CCCeeEEeCcHH
Confidence 346668888888755558999999999999 889999999999999999986 23 357787775443
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00045 Score=50.29 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=51.8
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
.++..-.+..|+..| . ++.|+.+||+.+++ .+..+.+.|+.|...|++.+. . +.|.+++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~-----~-g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D----KGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV-----G-ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H----TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----T-TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----C-CEEEECCCch
Confidence 344455677889999 5 48999999999999 999999999999999999986 2 4898887654
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00074 Score=58.87 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC--CCCeeEEeCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL--HPHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~ 244 (353)
..++++.+. ..++..+||.+||.|+.+..++++ +.+++++|. |.+++.+++ .+|+.++.+|+.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456677776 667789999999999999999998 679999999 777765532 2689999998865
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00036 Score=47.15 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=45.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+..|++.|...+ .|+|..|||+.+|+ +...+.+.|..|...|++... ..++|.++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~-----~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP-----SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC-----CCceEeeC
Confidence 556888887643 48999999999999 999999999999999998764 24677654
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00044 Score=50.54 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=51.4
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.++..-.++.|+..|.. ++.|+.|||+.+|+ .+..+.+.|+.|...|++.+. ++|. ...|.+++
T Consensus 18 ~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~-~~g~-~~~y~l~~ 81 (98)
T 3jth_A 18 KAMANERRLQILCMLHN----QELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR-KEAQ-TVYYTLKS 81 (98)
T ss_dssp HHHCSHHHHHHHHHTTT----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-CCTT-CCEEEECC
T ss_pred HHcCCHHHHHHHHHHhc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECH
Confidence 34445567788888887 48999999999999 999999999999999999987 4442 45576664
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0051 Score=61.36 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=101.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCC--------CCeEEEecchHHHhhCCC------------------------------
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYP--------YIKGINFDQPHVIEHAPL------------------------------ 231 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 231 (353)
+..+|+-+|||.=.....|...+| +++++-+|.|++++..++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467999999999999999988755 678899998887754321
Q ss_pred CCCeeEEeCCCCC--CC----------CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc
Q 018576 232 HPHIEHVAGDMFQ--SV----------PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS 297 (353)
Q Consensus 232 ~~rv~~~~~d~~~--~~----------p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~ 297 (353)
.++.+++..|+.+ .+ ... -++++--+|.+++.+++.++|+.+.+ + |++.+++.|.+.+..+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 0378999999986 11 222 67888899999999999999999885 4 7888999898776533221
Q ss_pred cccccccccchhhhhh---CC-CCcccCHHHHHHHHHhcCCceeeEee
Q 018576 298 IESKSNSHIDVLMMTQ---NP-GGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 298 ~~~~~~~~~~~~~~~~---~~-~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
+...+--.+... .. -....+.++..+.|.+.||+.+....
T Consensus 265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~ 308 (695)
T 2zwa_A 265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGD 308 (695)
T ss_dssp ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEE
T ss_pred ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceee
Confidence 111110011000 00 01234788999999999998776654
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00042 Score=52.61 Aligned_cols=66 Identities=9% Similarity=0.144 Sum_probs=52.9
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
.+|.--.++.|+..|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|... ++|. ...|++++.+
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~-~~gr-~~~y~l~~~~ 78 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTH-KQGR-VRTCAIEKEP 78 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEECSHH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE-ecCC-EEEEEECHHH
Confidence 44555577888888886 48999999999999 999999999999999999886 3332 4567777543
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0014 Score=45.56 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=48.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.+..|++.|...+.+.+.|+.|||+.+|+ +...+.+.|..|...|++... ++ .+..|.+++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~--g~-~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE--AG-TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEE--CS-SSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec--CC-CCCceEecC
Confidence 45678888888633347999999999999 899999999999999999986 22 356777653
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00097 Score=50.90 Aligned_cols=66 Identities=23% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
..+|.--.++.|+..|... ++.|+.+||+.+|+ .+..+.+.|+.|...|++... ++|. ...|.+++
T Consensus 36 ~~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~-~~gr-~~~y~l~~ 101 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR-KEGK-LALYSLGD 101 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CCEEEESC
T ss_pred HHHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EECC-EEEEEECH
Confidence 3444455678899999854 48999999999999 999999999999999999976 3332 34576664
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00084 Score=48.89 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=50.7
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++..-.++.|+..|..+ ++.|..|||+.+|+ ++..+.+.|+.|...|++.+. ++|. ...|.+++.
T Consensus 20 ~l~~~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~-~~~r-~~~y~l~~~ 84 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS---PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQ-RDAQ-RILYSIKNE 84 (99)
T ss_dssp HHCSHHHHHHHHHHTTC---CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE-ECSS-CEEEEECCH
T ss_pred HhCChHHHHHHHHHHhC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-ecCC-EEEEEEChH
Confidence 33445677788888764 48999999999999 999999999999999999987 3332 345666644
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00072 Score=53.71 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
..++|.--.++.|+..|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|+.. ++|. ...|++++.+.
T Consensus 51 ~l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~-~~Gr-~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPR-KDGR-FRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-ecCC-EEEEEEChHHH
Confidence 4566677789999999986 58999999999999 999999999999999999987 3442 45688776543
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0017 Score=45.54 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=44.3
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCCccceecc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGARRRYSLN 99 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~~~~y~~t 99 (353)
..|++.|... ++.|..|||+.+|+ .+..+++.|+.|...|++.+... .| .+..|.++
T Consensus 3 ~~Il~~L~~~---~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~~~~~g-r~~~y~l~ 60 (81)
T 2htj_A 3 NEILEFLNRH---NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRSPLRRG-MATYWFLK 60 (81)
T ss_dssp HHHHHHHHHS---CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEECCSSS-SSCEEEES
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeccCCC-CcEEEEEC
Confidence 3467777765 48999999999999 99999999999999999996522 22 24455554
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0017 Score=48.11 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+..-.++.|+..|.. ++.|+.|||+.+|+ .+..+.+.|+.|...|++... ++|. ...|.++
T Consensus 23 l~~~~r~~IL~~L~~----~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~-~~gr-~~~y~l~ 83 (106)
T 1r1u_A 23 LGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK-RQGQ-SMIYSLD 83 (106)
T ss_dssp TCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEES
T ss_pred hCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEEC
Confidence 334466777888875 48999999999999 999999999999999999986 2331 2345555
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00094 Score=48.69 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=53.9
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec-c-CCCCccceecccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL-D-GSGARRRYSLNSVSK 103 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~-~-~g~~~~~y~~t~~~~ 103 (353)
.++..-.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|++.+.. . ++ ....|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~-r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADR-PRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSS-CEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCc-ceEEEEECHHHH
Confidence 456666788888888754 48999999999999 9999999999999999999752 1 22 234577776654
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=48.85 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=48.7
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
-.+..|+..|.. +|.|+.+||+.+|+ ++..+.+.|+.|...|++.+.. +|. ...|.+|+.+.
T Consensus 21 ~~r~~IL~~L~~----~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~-~gr-~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGR----ADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVK-VGR-EIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHH----SCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE-ETT-EEEEEECSHHH
T ss_pred hHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEe-cCC-EEEEEechHHH
Confidence 456778888854 48999999999999 9999999999999999999762 231 34477776543
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00059 Score=50.90 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=46.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.-.++.|+..|.. ++.|+.|||+.+|+ .+..+.+.|+.|...|+|... ++|. ...|.+++
T Consensus 24 ~~~r~~IL~~L~~----~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~-~~gr-~~~y~l~~ 83 (108)
T 2kko_A 24 NGRRLQILDLLAQ----GERAVEAIATATGM----NLTTASANLQALKSGGLVEAR-REGT-RQYYRIAG 83 (108)
T ss_dssp TSTTHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE-EETT-EEEEEESC
T ss_pred CHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECh
Confidence 3345667777775 48999999999999 999999999999999999976 2331 34566553
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=47.01 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-C
Q 018576 13 FAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG-S 90 (353)
Q Consensus 13 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g 90 (353)
+..+++.+.+.|...+| ..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|+|++.... .
T Consensus 4 ~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVIL---------XHLTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp HHHHHHHHCSTTHHHHH---------HHHTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred HHHHHHHHcCccHHHHH---------HHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 34455555555554444 34443 489999999999 99 999999999999999999987311 1
Q ss_pred CCccceeccccccccc
Q 018576 91 GARRRYSLNSVSKYYV 106 (353)
Q Consensus 91 ~~~~~y~~t~~~~~l~ 106 (353)
...-.|.+|+.|..+.
T Consensus 67 ~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 67 PPKVEYELSEYGRSLE 82 (107)
T ss_dssp SCEEEEEECTTGGGGH
T ss_pred CCeEEEEECccHHHHH
Confidence 1124588887776544
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0055 Score=54.71 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=53.1
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC--CCCeeEEeCCCC
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL--HPHIEHVAGDMF 243 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~ 243 (353)
...++++.+. ..++..+||..||.|+.+..+++.. |+.+++++|. +.+++.+++ .+|+.++.+++.
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFS 114 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHH
Confidence 3566777776 6778899999999999999999986 7899999999 778887743 256777777664
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0081 Score=46.69 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhhhHHHHHHH-----HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhccccee
Q 018576 10 DQSFAYANQLAMGTVLPMAMQ-----AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVE 84 (353)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~-----~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~ 84 (353)
...+..+...+........-. +..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+
T Consensus 10 ~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 10 MPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT---TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEe
Confidence 334444444444333333332 35677788889886 48999999999999 9999999999999999999
Q ss_pred eecc--CCCCccceeccccccccc
Q 018576 85 CSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 85 ~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
+... ++. .-.+.+|+.|..+.
T Consensus 83 r~~~~~DrR-~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 83 RERNPSDQR-SFQLFLTDEGLAIH 105 (142)
T ss_dssp C-----------CCEECHHHHHHH
T ss_pred eccCCCCCC-eeeeEECHHHHHHH
Confidence 8631 111 12356666665544
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0023 Score=48.76 Aligned_cols=62 Identities=16% Similarity=0.323 Sum_probs=48.5
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+..-.++.|+..|.. ++.|+.+||+.+|+ .+..+.+.|+.|...|++... ++|. ...|.+++
T Consensus 43 L~~~~rl~IL~~L~~----~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~-~~gr-~~~y~l~~ 104 (122)
T 1r1t_A 43 LADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR-KQGR-HVYYQLQD 104 (122)
T ss_dssp HCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEESS
T ss_pred hCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE-EeCC-EEEEEECh
Confidence 334457778888876 48999999999999 999999999999999999986 2332 34466553
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0044 Score=47.78 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
-.+...++++.+-|...+|.. |.. |+.++.||++.+ ++ .+..+.+.|+.|+..|+|++....
T Consensus 14 Cpi~~~l~~lg~kW~l~IL~~---------L~~----g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~ 76 (131)
T 4a5n_A 14 SPVEFTLDVIGGKWKGILFYH---------MID----GKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYH 76 (131)
T ss_dssp CHHHHHHHHHCSSSHHHHHHH---------HTT----SCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CcHHHHHHHHcCcCHHHHHHH---------Hhc----CCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecC
Confidence 356677777777777766654 333 489999999999 99 999999999999999999987411
Q ss_pred -CCCccceeccccccccc
Q 018576 90 -SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 -g~~~~~y~~t~~~~~l~ 106 (353)
..-.-.|.+|+.|..+.
T Consensus 77 ~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 77 QVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSSCEEEEEECTTGGGGH
T ss_pred CCCCeEEEEECHhHHHHH
Confidence 11124699999888766
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.011 Score=51.57 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=60.9
Q ss_pred cCCCCeEEEEcC------CchHHHHHHHHHCCC-CeEEEecchHHHhhCCCCCCeeEEeCCCCCC-CCCC-cEEEeccc-
Q 018576 188 FANIKQLVDVGG------NLGVTLQAITSKYPY-IKGINFDQPHVIEHAPLHPHIEHVAGDMFQS-VPKG-DAIFLKWI- 257 (353)
Q Consensus 188 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~p~~-D~i~~~~~- 257 (353)
.+.+.+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.+|+.+. .... |+|++-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 457789999996 67773 34445676 699999985543221 1 4588997652 2222 88876422
Q ss_pred ------cccC--CchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 258 ------LHDW--DDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 258 ------Lh~~--~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
-++- +..-++.+|.=+.+.|+|||.+++--
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 1111 12246788888999999999999853
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0033 Score=43.80 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=48.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
.....|++.|.+. +.|+.|||+.+|+ ....+++.|..|+..|++.+. +| .+-.|.++....
T Consensus 17 ~~~~~IL~lL~~~----g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~--~~-~PP~W~~~~~~~ 77 (82)
T 1oyi_A 17 EIVCEAIKTIGIE----GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSS--DD-IPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHHSSS----TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEC--SS-SSCEEESCC---
T ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC--CC-CCCcceeccCcc
Confidence 3456677888864 4999999999999 999999999999999999986 33 366788775543
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0033 Score=55.22 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=46.7
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
-+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|+|.++ .++.|++.+..
T Consensus 32 al~IL~~l~~~~--~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~-----~~~~Y~LG~~~ 89 (275)
T 3mq0_A 32 AVRILDLVAGSP--RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS-----ADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC-----TTSEEEECTHH
T ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCcEEehHHH
Confidence 356888888753 47999999999999 899999999999999999986 14679988543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0054 Score=55.81 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=71.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC------------CCCCeeEEeCCCCC--C-CCCC-c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP------------LHPHIEHVAGDMFQ--S-VPKG-D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~--~-~p~~-D 250 (353)
..++.+|||+.+|.|+=+..+++..++.+++..|. +.-+...+ ...++.+...|... . .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56678999999999999999999877778899997 33222211 11468888888765 1 2233 8
Q ss_pred EEEec----c----c-------cccCCchHH-------HHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 251 AIFLK----W----I-------LHDWDDEHC-------LKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 251 ~i~~~----~----~-------Lh~~~~~~~-------~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.|++- . + .+.+...+. .++|.++.+.|||||+|+-.......
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 77752 1 1 122222221 37899999999999999988876543
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=47.49 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCC--HHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLS--ASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t--~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.+..+.+.+.+.|...+| ..|.. |+.+ +.||++.+ |+ .+..+.+.|+.|...|+|++..
T Consensus 16 ~~~~~l~~l~~~wrl~IL---------~~L~~----g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~- 77 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLII---------SVLGN----GSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRS- 77 (111)
T ss_dssp TTSSTHHHHHSTTHHHHH---------HHHTS----SSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHHHcCccHHHHH---------HHHhc----CCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEee-
Confidence 344555666666655544 44554 4777 99999999 99 9999999999999999999862
Q ss_pred CCCCccceeccccccccc
Q 018576 89 GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 89 ~g~~~~~y~~t~~~~~l~ 106 (353)
. ....|.+|+.|..+.
T Consensus 78 ~--r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 78 G--QITTYALTEKGMNVR 93 (111)
T ss_dssp S--SSEEEEECHHHHHHH
T ss_pred c--CcEEEEECccHHHHH
Confidence 2 146799998887654
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0037 Score=43.26 Aligned_cols=35 Identities=23% Similarity=0.151 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+|.|+.|||+.+|+ .+..+++.|+.|+..|++.+.
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 58999999999999 888899999999999999997
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.011 Score=45.37 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=37.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|.++||+.+++ ++..++++|+.|...|++... .| ..+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~--~g-~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSI--RG-AYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEec--CC-CCCceEeCC
Confidence 58999999999999 999999999999999999875 22 135687664
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.017 Score=45.29 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=46.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee----ccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS----LDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~----~~~g~~~~~y~~t~~~~~l~ 106 (353)
+..++..| .. ++.|..+||+.+++ ++..+.+.++.|+..|+|.+. +.++ -.-.+.+|+.|..+.
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~-R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQ-RLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCC-CeeEEEECHhHHHHH
Confidence 44488888 54 58999999999999 999999999999999999972 1121 122356666655444
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0069 Score=41.98 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=39.4
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.|... |.+|++|||+.+++ .+.-++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 56778776 59999999999999 999999999999999999986
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0046 Score=46.24 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG- 89 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~- 89 (353)
....+.+.+.+.|...+ +..|.. ++.|..+||+.+ ++ ++..+.+.|+.|+..|+|++....
T Consensus 11 ~~~~~l~~l~~~~~~~I---------L~~L~~----~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~ 73 (112)
T 1z7u_A 11 SINLALSTINGKWKLSL---------MDELFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNE 73 (112)
T ss_dssp HHHHHHHTTCSTTHHHH---------HHHHHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECC
T ss_pred CHHHHHHHHcCccHHHH---------HHHHHh----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCC
Confidence 44555555555555444 344554 389999999999 99 999999999999999999987311
Q ss_pred CCCccceeccccccccc
Q 018576 90 SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~ 106 (353)
....-.|.+|+.|..+.
T Consensus 74 d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 74 LPPRVEYTLTPEGYALY 90 (112)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 11123488888776544
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0044 Score=44.86 Aligned_cols=48 Identities=10% Similarity=0.206 Sum_probs=43.8
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccC
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~ 107 (353)
.+..+||..+++ ++..++..++.|...|++.+. .+.|.+|+.|..++.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999987 456999999987763
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0037 Score=45.66 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=47.7
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++.--.++.|+..|... ++.|+.|||+.+|+ .+..+.+.|+.|... ++... ++|. ...|++++.
T Consensus 23 aL~~~~Rl~IL~~l~~~---~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~-~~gr-~~~y~l~~~ 86 (99)
T 2zkz_A 23 TMAHPMRLKIVNELYKH---KALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRN-RQGL-EIYYSINNP 86 (99)
T ss_dssp HHCSHHHHHHHHHHHHH---SCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEE-EETT-EEEEECCCH
T ss_pred HhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhhe-EeCc-EEEEEEChH
Confidence 34445667777544433 48999999999999 999999999999999 99876 3442 455766643
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0066 Score=42.95 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=39.5
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.+.|... |.+|++|||+.+++ .+.-++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 66778776 59999999999999 999999999999999999987
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0071 Score=47.61 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=54.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCC
Q 018576 14 AYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGA 92 (353)
Q Consensus 14 ~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~ 92 (353)
...++.+.+.|...+|. .|.. |+.+..||++.+++ .+..+.+.|+.|+..|+|++... ...
T Consensus 15 ~~~l~~l~~~w~l~IL~---------~L~~----g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~- 76 (146)
T 2f2e_A 15 ARPLDVIGDGWSMLIVR---------DAFE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS- 76 (146)
T ss_dssp TTTHHHHCSSSHHHHHH---------HHHT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS-
T ss_pred HHHHHHhCCchHHHHHH---------HHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCC-
Confidence 34455555555544443 3433 48999999999999 99999999999999999998741 111
Q ss_pred ccceeccccccccc
Q 018576 93 RRRYSLNSVSKYYV 106 (353)
Q Consensus 93 ~~~y~~t~~~~~l~ 106 (353)
.-.|.+|+.|..+.
T Consensus 77 ~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 HQEYRLTDKGRALF 90 (146)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eEEEEECchHHHHH
Confidence 34788888876544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.013 Score=53.09 Aligned_cols=66 Identities=9% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHhccccC------CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC---CCCCeeEEeCCCCC
Q 018576 178 MSNILESYKGFA------NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP---LHPHIEHVAGDMFQ 244 (353)
Q Consensus 178 ~~~~~~~~~~~~------~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~rv~~~~~d~~~ 244 (353)
...|++.+. .. +...|||||.|.|.++..|++.....++++++. +..+...+ ..++++++.+|+++
T Consensus 41 ~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 41 YNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp HHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 345555554 33 357999999999999999998754457888887 33333222 35789999999976
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0069 Score=44.84 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeeccC
Q 018576 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLDG 89 (353)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (353)
-.+..+.+.+.+.|...+|. .|.. ++.+..||++.++ + ++..+.+.|+.|+..|+|++....
T Consensus 13 c~~~~~l~~l~~~~~~~IL~---------~L~~----~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIF---------QINR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHH---------HHTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh----CCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecC
Confidence 45566666666666655544 4443 4899999999994 9 999999999999999999987311
Q ss_pred -CCCccceeccccccccc
Q 018576 90 -SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 -g~~~~~y~~t~~~~~l~ 106 (353)
+.-.-.|.+|+.|..+.
T Consensus 76 ~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 76 EVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSSCEEEEEECHHHHTTH
T ss_pred CCCCeeEEEECccHHHHH
Confidence 11124589998876544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.047 Score=52.44 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=69.4
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC----C---------CCeEEEecc-hHHHhhCCC------CCCeeE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY----P---------YIKGINFDQ-PHVIEHAPL------HPHIEH 237 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p---------~~~~~~~D~-~~~~~~a~~------~~rv~~ 237 (353)
+.-+++.+. ...+.+|+|-.||+|.++....+.. + ...+.|+|. +.+...++- .+.-++
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 344444444 4556799999999999998766532 1 346899998 555554432 134466
Q ss_pred EeCCCCC-CCC----C-C-cEEEecccccc-CC-------------chHHHHHHHHHHHhCC-------CCCEEEEEee
Q 018576 238 VAGDMFQ-SVP----K-G-DAIFLKWILHD-WD-------------DEHCLKLLKNCYKSVP-------EDGKVIVVEL 288 (353)
Q Consensus 238 ~~~d~~~-~~p----~-~-D~i~~~~~Lh~-~~-------------~~~~~~~L~~~~~~L~-------pgG~l~i~e~ 288 (353)
..+|.+. +.. . . |+|+++--+-. +. ...-..++..+.+.|+ |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788765 322 1 2 99998865521 10 1112356778888886 6999998765
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0072 Score=46.61 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG- 89 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~- 89 (353)
.+..+++++.+.|...+ +..|.. ++.+..||++.+ |+ .+..+.+.|+.|+..|+|++....
T Consensus 24 ~~~~~l~~l~~~w~l~I---------L~~L~~----g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~ 86 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLI---------LVALRD----GTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPV 86 (131)
T ss_dssp THHHHHHHHHSHHHHHH---------HHHGGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred CHHHHHHHHcCCcHHHH---------HHHHHc----CCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCC
Confidence 34455555555555444 444544 489999999999 79 999999999999999999987311
Q ss_pred CCCccceeccccccccc
Q 018576 90 SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~ 106 (353)
..-.-.|.+|+.|..+.
T Consensus 87 d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECccHHHHH
Confidence 11123689998876554
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0073 Score=51.86 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=47.7
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ .++.|++++...
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~----~~~~Y~lg~~~~ 67 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG----PAGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG----GGCEEEECSHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CCCeEEECHHHH
Confidence 45677777642 37999999999999 9999999999999999999862 246798886543
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0047 Score=44.91 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=49.7
Q ss_pred HhChhhhhhhcCCCCCCCHHHH----HHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDI----AAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~el----a~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.++..|... ++.|..+| |+.+++ ++..+.+.|+.|+..|++.+.. +. ....|.+|+.|..+.
T Consensus 10 q~~iL~~l~~~---~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~-~~-r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN---EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQ-ER-GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC---TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEe-cC-CceEEEECHHHHHHH
Confidence 44566677664 48999999 999999 9999999999999999999863 21 145577777776555
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.01 Score=51.14 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=47.1
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+. .++.|.+++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK-----KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC-----CCCcEEECHHH
Confidence 45677777642 37999999999999 999999999999999999985 25679887543
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0073 Score=42.35 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
-+..|++.|...+ +++.|++||++.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence 4556888887631 0389999999999 88 8999999999999999999873
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.02 Score=44.79 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=39.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++.|.++||+.+++ ++..++++|..|...|+|... .|. ++.|.++.
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~--rG~-~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSV--RGA-KGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC--SSS-SSEEEESS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEec--CCC-CCCeeecC
Confidence 48999999999999 999999999999999999865 342 46687764
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.037 Score=43.94 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=50.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++....+ .-.-.+.+|+.|..+.
T Consensus 47 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK---PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 455688888876 48999999999999 9999999999999999999873111 0112366776666554
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.027 Score=43.38 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=53.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+... ++ ....|.+|+.|..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~-r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQ-REVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSST-TCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCC-CeeEEEECHHHHHHH
Confidence 456688888875 48999999999999 99999999999999999998731 12 134588888887666
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0097 Score=46.36 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|..+||+.+++ ++..+.+.|+.|+..|+|.+.+ ...|.+|+.|..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~-----~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK-----YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET-----TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee-----CceEEEchhHHHHH
Confidence 48999999999999 9999999999999999999862 46788888876554
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0053 Score=53.40 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=47.4
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|...+ +++|+.|||+.+|+ +..-+.|+|+.|+..|++.+++ ..+.|++.+..
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~----~~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE----GARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS----SSSEEEECTTH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----CCCcEEcCHHH
Confidence 45777777532 48999999999999 9999999999999999999862 23789987543
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.025 Score=43.46 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.... +.....+.+|+.|..+.
T Consensus 35 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 455677778765 48999999999999 999999999999999999986311 10122366777666544
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.014 Score=44.84 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=50.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+... ++ ..-.+.+|+.|..+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~-r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQ-RETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCT-TCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCC-ceeEEEECHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999998631 11 122366776665544
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.028 Score=44.75 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=39.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+|.|.++||+.+++ ++..++++|..|...|+|... .|. ++.|.++
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~--rG~-~GGy~La 87 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSI--RGA-HGGYVLN 87 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--CST-TCEEEEC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe--cCC-CCceEec
Confidence 58999999999999 999999999999999999976 342 4668766
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.014 Score=45.44 Aligned_cols=67 Identities=24% Similarity=0.304 Sum_probs=50.9
Q ss_pred HHHhChhhhhhh-cCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDK-AGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|.. . ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ..-.+.+|+.|..+.
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~-R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDG-RRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC-------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCC-CceeeEECHHHHHHH
Confidence 456778888887 5 48999999999999 99999999999999999998731 11 122366776665544
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0082 Score=52.08 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=48.9
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++ ++.|++++....+.
T Consensus 17 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQR--PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSC--SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECGGGHHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC------CCEEEEcHHHHHHH
Confidence 45677776532 48999999999999 999999999999999999986 47899987654443
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.041 Score=43.18 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee--ec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC--SL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~--~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++ .+ .++ ..-.+.+|+.|..+.
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~~d~-R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIPNDS-MDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--CTTC-TTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCCCCC-ceeEeEECHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999998 42 111 122477777766544
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=45.73 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=52.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.+.. +.-.-.+.+|+.|..+.
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 567788888776 48999999999999 999999999999999999986311 00123477777776654
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0066 Score=43.81 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=46.1
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCc-HHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTM-LDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~-l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++..|...+ .+.|..+||+.+++ ++.. +.+.++.|+..|++...+.+. ....+.+|+.|..+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~dr-R~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSY-RVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEET-TEEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCC-CeEEEEECHhHHHHH
Confidence 455555542 27999999999999 9999 999999999999999543222 123467777666544
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.009 Score=52.06 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=47.6
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKY 104 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~ 104 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.++ ++.|++++....
T Consensus 24 l~iL~~l~~~~--~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~------~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 24 LAVIRCFDHRN--QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD------GSAFWLTPRVLE 81 (265)
T ss_dssp HHHHHTCCSSC--SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES------SSEEEECGGGGG
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec------CCEEEEcHHHHH
Confidence 45677776432 48999999999999 999999999999999999985 478999865433
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.012 Score=43.22 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=41.8
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+..|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|.+.
T Consensus 20 ~~~~~il~~l~~~---~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 20 PSDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456677777665 48999999999999 999999999999999999986
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.023 Score=50.28 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL 231 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 231 (353)
+..++..+. .++..|||++||+|.++..+++. +.+++++|+ +.+++.+++
T Consensus 225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 444554443 45679999999999999998875 568999999 777776654
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=51.09 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=45.8
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVS 102 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~ 102 (353)
+.|++.|...+ ++.|+.|||+.+|+ +..-+.|+|+.|+..|++.+.+ ++.|.+++..
T Consensus 26 l~iL~~l~~~~--~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~-----~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAH--PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA-----DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTB--SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHH
T ss_pred HHHHHHHhhCC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC-----CCeEEecHHH
Confidence 45677775422 48999999999999 9999999999999999999862 2389887543
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.015 Score=43.75 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=43.2
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..-.++.|+..|.. ++.|+.+||+.+++ .+..+.+.|+.|...|++.+.
T Consensus 29 l~~~~~~~il~~L~~----~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 29 LATPSRLMILTQLRN----GPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HCCHHHHHHHHHHHH----CCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred hCCHHHHHHHHHHHH----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 333467778888887 37899999999999 999999999999999999876
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.01 Score=46.13 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..+..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 37 ~~~~~iL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~-R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEAN---EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDR-RISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHH---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----C-CSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccC-ceeeeeECHHHHHHH
Confidence 3566678888876 48999999999999 99999999999999999998731 11 123466776666544
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=46.01 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=49.3
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ....+.+|+.|..+.
T Consensus 40 ~~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~-R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSA---SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDK-RTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHS---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCc-ceeEeEECHhHHHHH
Confidence 3566778888876 48999999999999 99999999999999999998731 11 123466666665444
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.041 Score=44.01 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=39.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
++.|.++||+.+++ ++..++++|..|...|+++-. .|. ++.|.++..
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~--rG~-~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT--VGK-NGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE--CST-TCEEECCSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee--cCC-CCCeEecCC
Confidence 48999999999999 999999999999999999765 342 566887743
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.016 Score=49.73 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=52.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..|||+.+++ ++..+.|.|+.|...|++++.. ....|.+|+.+..+.
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~----r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG----KDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CccEEEECHHHHHHH
Confidence 456677777655 48999999999999 9999999999999999999862 246799998887664
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.039 Score=43.75 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=50.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~Dr-R~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQ-RKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CC-CSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccC-CeeEeeECHHHHHHH
Confidence 455578888876 48999999999999 99999999999999999998731 11 123466777666554
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.012 Score=45.46 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=50.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+..+ .....+.+|+.|..+.
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 466788888775 48999999999999 9999999999999999999863110 0112366776665443
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.019 Score=44.54 Aligned_cols=66 Identities=6% Similarity=0.024 Sum_probs=49.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|. . ++.|..+||+.+++ ++..+.+.++.|+..|++.+.... +.....+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 4556677777 4 58999999999999 999999999999999999986311 10122366676665444
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.021 Score=44.22 Aligned_cols=67 Identities=7% Similarity=0.111 Sum_probs=50.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.... +.....+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 566678888775 48999999999999 999999999999999999987311 11122466676665444
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.06 Score=41.89 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=49.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+... ++ ....+.+|+.|..+.
T Consensus 43 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~-R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 43 PQFVALQWLLEE---GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDR-RVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCc-ceeEeEECHhHHHHH
Confidence 355677788775 48999999999999 99999999999999999998631 11 122366776665544
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.022 Score=44.91 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=51.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ ....+.+|+.|..+.
T Consensus 44 ~~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~-R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 44 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDR-RTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTS-SCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCc-ceeEEEECHHHHHHH
Confidence 3566778888775 48999999999999 99999999999999999998631 11 122366676665544
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.05 Score=43.01 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=48.3
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~Dr-R~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDR-RSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC----CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCC-CeeEEEECHHHHHHH
Confidence 4457777765 48999999999999 99999999999999999998731 11 122466776666544
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.017 Score=45.55 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=49.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.. .++ -.-.+.+|+.|..+.
T Consensus 44 ~~~~iL~~l~~~---~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~-R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN---DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDK-RRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC---SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC-------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcC-CeeEeEECHHHHHHH
Confidence 455677777765 48999999999999 9999999999999999999862 111 123467777666544
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.16 Score=44.81 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCCeEEEEcCCchHHHHH----HHHHCCCCe--EEEecchHH-------------H----hhCCC--CCC--eeEEeCCC
Q 018576 190 NIKQLVDVGGNLGVTLQA----ITSKYPYIK--GINFDQPHV-------------I----EHAPL--HPH--IEHVAGDM 242 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~----l~~~~p~~~--~~~~D~~~~-------------~----~~a~~--~~r--v~~~~~d~ 242 (353)
...+|||+|=|||..... +.+..|+.+ ++.++.... . ..... ..+ +++.-+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 457999999999976543 334567754 455553100 0 00000 023 35667777
Q ss_pred CCC---CCCC--cEEEeccccccC-CchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 243 FQS---VPKG--DAIFLKWILHDW-DDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 243 ~~~---~p~~--D~i~~~~~Lh~~-~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
.+. ++.. |++++--.=-.- |+---..+|+++++.++|||.+.- .+
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt--------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS--------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC---------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee---------------------------
Confidence 652 3332 887774311110 111124789999999999988762 10
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeeeC
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~~ 343 (353)
.....++-|+++||++.++...+
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEECC-
T ss_pred ----CcHHHHHHHHHCCCEEEecCCCC
Confidence 12356788999999987765543
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.0095 Score=46.23 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=49.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|++.+. ++ -.-.+.+|+.|..+.
T Consensus 37 ~q~~vL~~l~~~---~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~-R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND---EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDE-RNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT---CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCc-ceeeeeEChHHHHHH
Confidence 445566777654 58999999999999 99999999999999999998731 11 123467777776554
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.021 Score=44.31 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHhChhhhh-hhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceecccccccc
Q 018576 33 YELGIFQII-DKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L-~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l 105 (353)
.++.++..| ... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+.. +...-.+.+|+.|..+
T Consensus 38 ~~~~iL~~l~~~~---~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~ 105 (146)
T 2fbh_A 38 ARWLVLLHLARHR---DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVL 105 (146)
T ss_dssp THHHHHHHHHHCS---SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHH
Confidence 345577777 543 58999999999999 999999999999999999987311 0011235566555543
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.02 Score=43.57 Aligned_cols=48 Identities=10% Similarity=0.229 Sum_probs=41.8
Q ss_pred HHhChhhhhhhcCCCCC-CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAK-LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|...+ +| .|+.|||+.+++ +..-+.|.|+.|+..|+|.+.
T Consensus 27 ~e~~il~~L~~~~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEP--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHST--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCC--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 4666788887653 46 899999999999 999999999999999999986
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.063 Score=42.93 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=50.6
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... +...-.+.+|+.|..+.
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 456678888775 48999999999999 999999999999999999986311 11122366776665544
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.032 Score=46.41 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=53.0
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC---CCCccceecccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG---SGARRRYSLNSVSK 103 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~---g~~~~~y~~t~~~~ 103 (353)
.+|..-.++.|+..|.. +|.|+.+||+.+++ ++..+.+.|+.|...|+|...... |...-.|.+|+.+.
T Consensus 10 kaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 44555567777778866 48999999999999 999999999999999999986321 12245677776544
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.028 Score=43.34 Aligned_cols=69 Identities=7% Similarity=0.184 Sum_probs=49.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+ +++.|..+||+.+++ ++..+.+.++.|+..|+|.+.+.. +.....+.+|+.|..+.
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCC-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 3555677787752 127999999999999 999999999999999999987311 10122466676665444
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=44.87 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... +...-.+.+|+.|..+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLT---PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 455678888775 48999999999999 999999999999999999987311 11122466666665443
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.029 Score=37.95 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=48.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.+-.|++.|.++| .|++..|||+.+|+ +..-|.+.|..|-..|.|..+ ..-+|.++
T Consensus 20 ~eekVLe~LkeaG--~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP-----kRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAG--SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT-----SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHT--SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEES
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC-----CCceeeCC
Confidence 4567888999876 79999999999999 999999999999999999876 25667765
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.018 Score=45.68 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|++... ++ ....+.+|+.|..+.
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~-R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQ-RSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CC-SSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCC-CeeEEEECHHHHHHH
Confidence 466678888875 48999999999999 99999999999999999998631 11 123366676665443
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.021 Score=44.39 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=53.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceecccccccccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~~~ 108 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ....+.+|+.|..+...
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~-R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDE-RSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCT-TSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCC-CeeEEEECHhHHHHHHH
Confidence 566677888775 48999999999999 99999999999999999998631 11 12347788888766643
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.015 Score=41.92 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=41.0
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.|..+||+.+++ ++..+.++++.|+..|+|... .++. ...|.+|+.|..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~-~d~R-~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE-LEGR-TKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC-CCCC-eEEEEEChhHHHHH
Confidence 4899999999999 999999999999999999433 2221 23588887776554
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.022 Score=43.80 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+... ...-.+.+|+.|..+.
T Consensus 30 ~~~~iL~~l~~~---~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHRE---PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHS---TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 455677778775 48999999999999 9999999999999999999863110 0012266666665444
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.018 Score=45.09 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=48.0
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|...+ +++|..+||+.+++ ++..+.+.++.|+..|+|++.+... .-.-.+.+|+.|..+.
T Consensus 39 ~~q~~vL~~l~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 39 VRSYSVLVLACEQA--EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHHST--TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 35666777786543 47899999999999 9999999999999999999863110 0011266776666544
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.014 Score=45.85 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=49.1
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ -.-.+.+|+.|..+.
T Consensus 41 ~~q~~iL~~l~~~---~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~-R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEE---NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDK-RQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHS---SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC----------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCc-ceeeeeECHHHHHHH
Confidence 3566778888775 48999999999999 99999999999999999998731 11 122366666665443
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.021 Score=45.29 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.. .++ ....|.+|+.|..+.
T Consensus 50 ~~~~iL~~l~~~---~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~-R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY---PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDR-RRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS---TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCC-CeeEEEECHHHHHHH
Confidence 456678888875 48999999999999 9999999999999999999862 111 123466666665444
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.025 Score=43.74 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYY 105 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l 105 (353)
++.|..+||+.+++ ++..+.+.|+.|+..|+|.+. ...|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK------EDGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec------CCeEEEChhHHHH
Confidence 48999999999999 999999999999999999986 2568888777644
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.02 Score=44.16 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+. ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ -.-.+.+|+.|..+.
T Consensus 32 ~~~~vL~~l~~~~~-~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~-R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQ-DGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDT-RRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTT-TCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCC-CeeeeEECHHHHHHH
Confidence 45667777877521 38999999999999 99999999999999999998731 11 122356666666554
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=44.67 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=52.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceecccccccccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~~~ 108 (353)
.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|+..|+|++... ++ ..-.+.+|+.|..+...
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~-R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDE-RQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccC-CeeEeeECHHHHHHHHH
Confidence 456677888775 48999999999999 99999999999999999998631 11 12247788888766543
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.022 Score=44.45 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=42.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+. ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 42 ~q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~Dr-R~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 42 QQGRMIGYIYENQE-SGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNA-RQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHHTT-TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC---------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCc-hhheeeECHHHHHHH
Confidence 44567777776421 38999999999999 99999999999999999998731 11 112355665555444
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.026 Score=43.84 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=47.6
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..+..|+..|... +.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++ ..-.+.+|+.|..+.
T Consensus 38 ~~~~~iL~~l~~~----~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~-R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 38 NTQEHILMLLSEE----SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDA-RVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHHhC----CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCC-ceeEEEECHhHHHHH
Confidence 3566778888774 4999999999999 99999999999999999998631 21 123466666555443
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.022 Score=44.10 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.+.... +...-.+.+|+.|..+.
T Consensus 30 ~~~~iL~~l~~~---~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 30 GQYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp THHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 345577778775 48999999999999 999999999999999999987311 11122366776665444
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.052 Score=42.70 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
...++++...+... .. ++.|+++||+.+++ ++..++++|..|...|+|... .| .+.|.++..
T Consensus 13 ~~yAl~~L~~La~~---~~----~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~--rG--~GGy~L~~~ 74 (149)
T 1ylf_A 13 FSIAVHILSILKNN---PS----SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN--RG--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHHS---CG----GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEESSC
T ss_pred HHHHHHHHHHHHhC---CC----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEc--cC--CCceEeCCC
Confidence 33456666555432 12 48999999999999 999999999999999999875 23 466877644
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.042 Score=43.10 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=53.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeeccC------CCCccceecccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLDG------SGARRRYSLNSVSKYY 105 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~~------g~~~~~y~~t~~~~~l 105 (353)
.+..|+..|...+ .+..|+++|++.++ + ...-|.+.|+.|+..|+|++...+ |.-...|.+|+.|...
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 6677777776642 23689999999999 8 999999999999999999976311 1112369999998866
Q ss_pred cC
Q 018576 106 VP 107 (353)
Q Consensus 106 ~~ 107 (353)
+.
T Consensus 105 l~ 106 (151)
T 3u1d_A 105 LR 106 (151)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.017 Score=44.76 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=50.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++..... .....|.+|+.|..+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 466678888775 48999999999999 9999999999999999999863110 0012366776666544
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.029 Score=40.39 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~~~~y~~t~~~~~l~ 106 (353)
++.+..+||+.+++ +...+.|.|..|...|+|..... +| .+...+|+.|..++
T Consensus 35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~--R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADG--RGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTS--CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCC--ceeEEECHHHHHHH
Confidence 58899999999999 99999999999999999998742 22 23356776665443
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.095 Score=40.98 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=49.0
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~ 106 (353)
++.|+..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.... +...-.+.+|+.|..+.
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 45577888775 48999999999999 999999999999999999987311 00112366666655443
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.016 Score=44.83 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+... .....+.+|+.|..+.
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 566778888876 48999999999999 9999999999999999999863110 0012366666665444
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=93.89 E-value=0.02 Score=43.70 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=49.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|...+ +++.|..+||+.+++ ++..+.++++.|+..|+|.+.+ .++. .-.+.+|+.|..+.
T Consensus 38 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R-~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 38 EEFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDER-TVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSC-CCEEECCSHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCC-eeEEEECHHHHHHH
Confidence 4556777777641 138999999999999 9999999999999999999863 1111 22356666665444
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.026 Score=45.21 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|...+ ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ -.-.+.+|+.|..+.
T Consensus 54 ~q~~vL~~L~~~~--~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~Dr-R~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDR-RAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC---------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCC-CeeEEEECHHHHHHH
Confidence 5666788887622 47999999999999 99999999999999999998731 11 123466776666544
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.017 Score=49.14 Aligned_cols=72 Identities=8% Similarity=0.159 Sum_probs=54.7
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCC----Cccceecccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSG----ARRRYSLNSV 101 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~----~~~~y~~t~~ 101 (353)
..+|..-.++.|+..|.. +|.|+.+||+.+|+ .+..+.+.|+.|...|+|....+.|. -...|++++.
T Consensus 6 lkaL~~~~R~~IL~~L~~----g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC----MECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccc
Confidence 345555677788888886 48999999999999 99999999999999999998312221 0235888876
Q ss_pred cccc
Q 018576 102 SKYY 105 (353)
Q Consensus 102 ~~~l 105 (353)
+...
T Consensus 78 ~~~~ 81 (232)
T 2qlz_A 78 KSYV 81 (232)
T ss_dssp EEEE
T ss_pred hhhH
Confidence 6543
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.031 Score=44.17 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=48.2
Q ss_pred HHhChhhhhh-hcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIID-KAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.++..|. .. ++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ ..-.+.+|+.|..+.
T Consensus 48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~-R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNP---DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDR-RSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCT---TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC---------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCC-CeEEEEEChhHHHHH
Confidence 4566888884 43 48999999999999 99999999999999999998631 11 112366666665444
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.058 Score=42.52 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=45.5
Q ss_pred hhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 38 FQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 38 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
...|..+ ++.|..+||+.+++ ++..+++.|+.|+..|+|.+.+ +..+.+|+.|..+.
T Consensus 46 ~~~l~~~---~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~-----~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 46 SDLIREV---GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP-----WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHH---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET-----TTEEEECHHHHHHH
T ss_pred HHHHHhC---CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec-----CCceEEChhHHHHH
Confidence 3356554 47899999999999 9999999999999999999862 35577887765443
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.054 Score=42.63 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
.++.++..|...+ ++.|..+||+.+++ ++..+.++++.|+..|+|++.+ +. .+. ...+|+.|..+.
T Consensus 32 ~q~~vL~~L~~~~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~-~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 32 THWVTLYNINRLP--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SA-NDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHHSC--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CS-SCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CC-CCCcchhhhcCHHHHHHH
Confidence 3445667776543 36788999999999 9999999999999999999874 21 122 356666665544
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.03 Score=45.71 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=53.8
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC-CCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP-TKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSV 101 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~ 101 (353)
.++|.--.++.|+..|.. +|.|+.+|++.++ + ....+.+.|+.|...|+|+...+ .|.....|++++.
T Consensus 17 ~~~La~P~Rl~il~~L~~----~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~ 88 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG----RSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQ 88 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT----SCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTT
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccc
Confidence 344555588899999987 5999999999996 8 78899999999999999986531 2222356887765
Q ss_pred ccc
Q 018576 102 SKY 104 (353)
Q Consensus 102 ~~~ 104 (353)
+..
T Consensus 89 ~~~ 91 (182)
T 4g6q_A 89 AGD 91 (182)
T ss_dssp TTT
T ss_pred ccc
Confidence 543
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.047 Score=39.11 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=50.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHH-hCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAA-QLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~-~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~ 107 (353)
.++.|+-.|... ++.|+.+||+ .+++ +...+.|-++.|...|+|+.+ | ++ ..+|+.|..++.
T Consensus 17 ~QfsiL~~L~~~---~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~---~--~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 17 KTATILITIAKK---DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS---G--DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHHS---TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE---T--TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC---C--CC-eeeCHhHHHHHH
Confidence 355667778776 4899999999 9999 999999999999999999932 2 33 888888876664
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.058 Score=39.84 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=39.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.++.|+..+...| .+.|..+||+.+|+ +...+++.|+.|...|++...
T Consensus 19 ~~l~Il~~l~~~g--~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3455666664432 37999999999999 999999999999999999875
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.12 Score=38.70 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=54.1
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC--------CCCCCCc-CcHHHHHHHHhcccceeeecc--CCCCccce
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP--------TKNKDAP-TMLDRILRLLASYSVVECSLD--GSGARRRY 96 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~--------~~~~~~~-~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y 96 (353)
++.-..++-|+..|.. +|.+..+|++.+. + .+ ..+.+.|+-|+..|+|+.... +|.....|
T Consensus 9 ~~~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y 80 (118)
T 2esh_A 9 FRGWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIY 80 (118)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEE
T ss_pred cccchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEE
Confidence 3444566777888877 4899999999983 6 88 999999999999999988732 23233468
Q ss_pred eccccccccc
Q 018576 97 SLNSVSKYYV 106 (353)
Q Consensus 97 ~~t~~~~~l~ 106 (353)
.+|+.|...+
T Consensus 81 ~LT~~G~~~l 90 (118)
T 2esh_A 81 RITPQGKLYL 90 (118)
T ss_dssp EECHHHHHHH
T ss_pred EEChHHHHHH
Confidence 9998887654
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.13 Score=39.72 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=50.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
.++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|+|++.+ +. .+. .+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~---~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~-~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE---PR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DS-KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS---CE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CC-CCCceEEEEECHHHHHHH
Confidence 456788888885 35 99999999999 9999999999999999999873 11 111 377777776554
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.045 Score=44.86 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=53.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceecccccccccC
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~l~~ 107 (353)
+..+..++..|...+ .++.|..+||+.+++ ++..+.+.++.|+..|+|++.... ..-.-.+.+|+.|..+..
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence 445677788887521 148999999999999 999999999999999999987311 101234778888776553
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=92.93 E-value=0.039 Score=38.38 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=40.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|+.||++.++...+..+.-+.++|+.|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH---SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS---SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 455677777764 489999999999630001788999999999999999987
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.19 Score=37.59 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=53.3
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC------CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceec
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQL------PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSL 98 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~ 98 (353)
.++-..++=|+..|.. +|.+--+|++.+ ++ ++.-+...|+-|+..|+|+.... +|.....|++
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 4444556666777777 489999999997 67 89999999999999999998631 2333456999
Q ss_pred cccccccc
Q 018576 99 NSVSKYYV 106 (353)
Q Consensus 99 t~~~~~l~ 106 (353)
|+.|+..+
T Consensus 79 T~~G~~~l 86 (117)
T 4esf_A 79 NEAGRQEL 86 (117)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99888665
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.053 Score=45.50 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=43.8
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
++.|..+||+.+++ ++..+.+.++.|...|++++.+ ...+.+|+.|..+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK-----KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET-----TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec-----CCCeEECHHHHHHH
Confidence 58999999999999 9999999999999999999972 45688888877554
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.041 Score=45.91 Aligned_cols=66 Identities=15% Similarity=-0.022 Sum_probs=50.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..|+..|... ++.|..+||+.+++ ++..+.++++.|+..|+|.+... ++ -.-.+.+|+.|..+.
T Consensus 49 ~q~~iL~~L~~~---~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~Dr-R~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDK-RNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC-------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCC-ceEEEEECHHHHHHH
Confidence 455677888775 48999999999999 99999999999999999998731 11 112467777776554
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=92.65 E-value=0.026 Score=42.58 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=39.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCC----CCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLP----TKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|+..|... +|.|..+||+.++ + .+..+.++|+.|+..|+|.+.
T Consensus 12 ~~~vL~~l~~~---~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK---KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH---SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC---CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 44566666654 4899999999999 6 689999999999999999987
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.079 Score=41.54 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=41.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 8 ~~~~iL~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAAD---GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 355678888775 48999999999999 999999999999999999764
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.24 Score=36.99 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC--------CCCCCCCcCcHHHHHHHHhcccceeeec---cCCCCccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL--------PTKNKDAPTMLDRILRLLASYSVVECSL---DGSGARRR 95 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~r~L~~L~~~g~l~~~~---~~g~~~~~ 95 (353)
..++-..++=|+..|.. +|.+--+|.+.+ ++ ++.-+.+.|+-|+..|+|+... .+|.....
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~ 78 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKY 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEE
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceE
Confidence 34455566667778887 489999999887 56 8999999999999999999863 12333456
Q ss_pred eeccccccccc
Q 018576 96 YSLNSVSKYYV 106 (353)
Q Consensus 96 y~~t~~~~~l~ 106 (353)
|.+|+.|+..+
T Consensus 79 Y~LT~~G~~~l 89 (116)
T 3f8b_A 79 YRLTEIGHENM 89 (116)
T ss_dssp EEECHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99998887655
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.53 E-value=0.085 Score=41.10 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=40.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|++.|... ++.|..|||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 7 d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 45678888875 48999999999999 999999999999999999864
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.1 Score=42.88 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.++....+..|+..|.. ++.|..|||+.+|+ .+..+.+.|+.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~----~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34445667788889985 48999999999999 999999999999999999986
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.058 Score=43.08 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
.++.|+..|...+. ++.|..+||+.+++ ++..+.++++.|+..|+|++.. +. .+. .+.+|+.|..+.
T Consensus 47 ~q~~vL~~l~~~~~-~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~-~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHP-EGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KP-ENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ET-TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CC-CCCCeeEeEECHHHHHHH
Confidence 45667777876411 48999999999999 9999999999999999999873 11 122 366676666544
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.07 Score=41.83 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=41.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 4 ~~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYN---AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 356788888875 48999999999999 999999999999999999863
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.17 Score=39.49 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=36.9
Q ss_pred CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 51 t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
|+++||+..++ ++..++++|..|...|+|... .| .+.|.++..
T Consensus 25 s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~--rG--~GGy~Lar~ 67 (145)
T 1xd7_A 25 SSEIIADSVNT----NPVVVRRMISLLKKADILTSR--AG--VPGASLKKD 67 (145)
T ss_dssp CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC--SS--SSSCEESSC
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEee--cC--CCCceecCC
Confidence 99999999999 999999999999999999875 23 456777643
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.15 Score=39.70 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=47.8
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ ...+|.++
T Consensus 21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 87 (145)
T 2fe3_A 21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGD-ASSRFDFV 87 (145)
T ss_dssp CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTT-SCCEEEEC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCC-CceEEECC
Confidence 445667889997643 589999999999 56 8889999999999999999874222 24567654
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=92.14 E-value=0.098 Score=41.62 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..|||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 11 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQEN---GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 355678888875 48999999999999 999999999999999999864
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.073 Score=38.63 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|-+. ++.|+.||++.++.+.+..+.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~---~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL---GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH---SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 356678888765 489999999999751111578899999999999999987
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.16 Score=38.86 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=48.3
Q ss_pred HHHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceec
Q 018576 30 QAVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSL 98 (353)
Q Consensus 30 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~ 98 (353)
.+.-+.-|++.|...+ ++.|++||.+.+ ++ +..-+-|.|+.|+..|++.+..-++ ...+|..
T Consensus 9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~-~~~~y~~ 75 (131)
T 2o03_A 9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDT-GESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTT-SCEEEEE
T ss_pred CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCC-CceEEEe
Confidence 3556777888887643 589999999999 67 8889999999999999999874222 2456754
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.12 Score=39.93 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=38.7
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..++..|.... +|.|..+||+.+|+ ++..+.+.|+.|+..|++++.
T Consensus 28 ~~~il~~L~~~~--~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 28 VGAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 334566664211 48999999999999 999999999999999999986
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.76 E-value=0.12 Score=40.52 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=41.5
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.++.|...|++.+.
T Consensus 10 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSEN---SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 455688888875 58999999999999 999999999999999999864
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.73 E-value=0.057 Score=43.77 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|...++.++.|..+||+.+++ ++..+.+.++.|+..|+|++... ++ ..-.+.+|+.|..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~Dr-R~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDR-RSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC--------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCC-CeeEEEECHHHHHHH
Confidence 45667888887531012999999999999 99999999999999999998631 11 112366666665444
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.054 Score=42.44 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=34.8
Q ss_pred HhChhhhhhhcCC--CCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGP--GAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~--~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.++..|...++ ++++|..+||+.+++ ++..+.++++.|+..|+|...
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee
Confidence 4445666654321 247899999999999 999999999999999999654
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.59 E-value=0.11 Score=40.84 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=41.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|.+. ++.|..+||+.+|+ .+..+.+.++.|...|++...
T Consensus 9 ~d~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence 345678888875 48999999999999 999999999999999999863
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.55 E-value=0.093 Score=41.22 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=41.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.++.|...|++.+.
T Consensus 8 ~~~~il~~L~~~---~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 355678888875 48999999999999 999999999999999999863
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.14 Score=41.22 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=41.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 455688888875 48999999999999 999999999999999999754
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=91.23 E-value=0.12 Score=37.61 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.|..|||+.+|+ ++.-+.+.|+.|...|++.+.
T Consensus 35 ~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 48999999999999 999999999999999999987
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.11 Score=41.33 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|++.|.+. ++.|..+||+.+|+ .+..+++-++.|...|++...
T Consensus 4 ~d~~il~~L~~~---~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED---STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC---SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence 456788899876 59999999999999 999999999999999999853
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.11 Score=40.10 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=40.0
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|+..|... ++.|..+||+.+|+ .+..+.+.|+.|...|++.+.
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence 45677778765 48999999999999 999999999999999999754
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=90.93 E-value=0.17 Score=39.45 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=52.5
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhC--------CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCcccee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQL--------PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYS 97 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~ 97 (353)
+.--.++-|+..|.. +|.+..+|++.+ ++ .+..+.+.|+-|+..|+|+.... ++.....|.
T Consensus 38 ~~g~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 38 IRGYVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp GGGTHHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred hcCcHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 344466777788876 489999988887 57 89999999999999999988631 222234689
Q ss_pred ccccccccc
Q 018576 98 LNSVSKYYV 106 (353)
Q Consensus 98 ~t~~~~~l~ 106 (353)
+|+.|..++
T Consensus 110 LT~~G~~~l 118 (145)
T 1xma_A 110 ITPEGIKYY 118 (145)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 998887654
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.057 Score=42.23 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=45.8
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
+.++..|.... ++++|..+||+.+++ ++..+.++++.|+..|+|++.+ +. .+. ...+|+.|..+.
T Consensus 38 ~~vL~~L~~~~-~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~-~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSK-SGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NP-NDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSG-GGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cC-CcCceeEEEECHHHHHHH
Confidence 34555554211 148999999999999 9999999999999999999874 11 122 256666665443
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.28 Score=36.61 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=53.6
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC------CCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCcccee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL------PTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYS 97 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~ 97 (353)
..++-..++=|+..|.. +|.+--+|++.+ ++ ++.-+...|+-|+..|+|+.... +|.....|+
T Consensus 8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 79 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR 79 (116)
T ss_dssp HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 34444456667777877 489999999997 57 89999999999999999997631 233344699
Q ss_pred ccccccccc
Q 018576 98 LNSVSKYYV 106 (353)
Q Consensus 98 ~t~~~~~l~ 106 (353)
+|+.|+..+
T Consensus 80 lT~~G~~~l 88 (116)
T 3hhh_A 80 LTSSGEAEL 88 (116)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 998888655
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=90.38 E-value=0.19 Score=36.97 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=50.4
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHh----CCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQ----LPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKY 104 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~----~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~ 104 (353)
-..++-|+..|.. +|.+--+|++. +++ ++..+.+.|+-|+..|+|+.... +|.....|.+|+.|..
T Consensus 8 g~l~~~IL~~L~~----~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~ 79 (108)
T 3l7w_A 8 LLIEYLILAIVSK----HDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEK 79 (108)
T ss_dssp HHHHHHHHHHHHH----SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHc----CCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHH
Confidence 3455667777877 47888787777 478 89999999999999999998631 2222235889988876
Q ss_pred cc
Q 018576 105 YV 106 (353)
Q Consensus 105 l~ 106 (353)
.+
T Consensus 80 ~l 81 (108)
T 3l7w_A 80 HL 81 (108)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=90.32 E-value=1.5 Score=40.04 Aligned_cols=62 Identities=10% Similarity=0.178 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-------CCCeEEEecchHHH
Q 018576 160 PRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-------PYIKGINFDQPHVI 226 (353)
Q Consensus 160 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 226 (353)
|+....|.+.+..+.. ....... .+.+.+|+|+|+|+|.++..+++.. ..+++..++.+..+
T Consensus 55 peis~~FGe~la~~~~----~~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 55 PEISQMFGELLGLWSA----SVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp HHHCHHHHHHHHHHHH----HHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CchHHHHHHHHHHHHH----HHHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 5555666654433211 1112222 4456789999999999999887642 34689999984433
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.16 Score=38.05 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=55.8
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCC------CCCCCCcCcHHHHHHHHhcccceeeecc---CCCCcccee
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLP------TKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYS 97 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~ 97 (353)
..+.-..++-|+..|.. +|.+.-+|++.+. + .+..+...|+-|+..|+|+.... +|.....|.
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 45555667778888887 4899999999886 7 78899999999999999997631 222334699
Q ss_pred cccccccccC
Q 018576 98 LNSVSKYYVP 107 (353)
Q Consensus 98 ~t~~~~~l~~ 107 (353)
+|+.|...+.
T Consensus 81 lT~~G~~~l~ 90 (117)
T 3elk_A 81 ITDAGKKFLC 90 (117)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9999886553
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=1.5 Score=38.81 Aligned_cols=90 Identities=17% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCeEEEEcCCc--hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCCcEEEeccccccCCchHH
Q 018576 191 IKQLVDVGGNL--GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKGDAIFLKWILHDWDDEHC 266 (353)
Q Consensus 191 ~~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~~~~ 266 (353)
..+|.=||+|. +.++..+.+.....+++++|. ++.++.+.+..-+.....|..+ .....|+|++.- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999883 345555555533348999998 5555555433222222233332 233449988763 34456
Q ss_pred HHHHHHHHHhCCCCCEEEE
Q 018576 267 LKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 267 ~~~L~~~~~~L~pgG~l~i 285 (353)
..+++++...|+||..++-
T Consensus 108 ~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhccCCCcEEEE
Confidence 7889999999999875543
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.96 E-value=0.51 Score=29.76 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
.++|+.|+|+..+. +-+..+.-|+.|-+.|-+.+. ..+|++.+
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR------sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR------SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------CCEEEECC
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh------ccccccCc
Confidence 47999999999999 888888899999999999986 57888764
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.65 Score=40.39 Aligned_cols=97 Identities=8% Similarity=-0.063 Sum_probs=68.9
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCC----CCC--C-cEEEecccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQS----VPK--G-DAIFLKWIL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~----~p~--~-D~i~~~~~L 258 (353)
...+||+=+|||.+++++++ +.-+++.+|. +..++..++ .++++++..|.+.. .|. . |+|++---.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 56789999999999999998 4578999998 555544443 36799999997651 232 3 999887665
Q ss_pred ccCCchHHHHHHHHHHHh--CCCCCEEEEEeeecC
Q 018576 259 HDWDDEHCLKLLKNCYKS--VPEDGKVIVVELMLP 291 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~--L~pgG~l~i~e~~~~ 291 (353)
.. .++..+++..+.+. +.|+|.++|.=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 42 23456667666664 358898888776654
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=89.60 E-value=0.37 Score=34.89 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=40.8
Q ss_pred HHHHHHHhChhh-hhhhcCCCCCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 28 AMQAVYELGIFQ-IIDKAGPGAKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 28 ~l~~a~~lglf~-~L~~~~~~~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+...++..|.+ .+..+ ..+ |..+||+.+|+ ...-+++.|+.|...|++...
T Consensus 15 ~l~~~i~~~I~~~~l~~g---~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAPG---DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHTTTTSCCTT---SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHhCCCCCc---CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 344455556665 34332 356 99999999999 999999999999999999986
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.23 Score=40.89 Aligned_cols=35 Identities=20% Similarity=0.085 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|.|..|||+.+|+ ....+.+.|+.|+..|++.+.
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 48899999999999 677899999999999999976
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=89.33 E-value=0.65 Score=31.44 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=40.0
Q ss_pred hhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 39 QIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 39 ~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
..|..+ +..|+.+||+++|+ ...-+.|.|-.|...|.|...+ | ..-.|..+
T Consensus 22 ~~L~~~---~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~--~-~PP~W~~~ 72 (75)
T 1sfu_A 22 LSLNTN---DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP--S-NPPKWFKN 72 (75)
T ss_dssp HTSCTT---CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--C-SSCEEEEC
T ss_pred HhCCCC---cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC--C-CCCCccCC
Confidence 355553 35999999999999 8889999999999999999872 2 24555544
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=89.29 E-value=0.23 Score=37.78 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|.++||+.+++ ++.-+.+.|+.|+..|++++.
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3699999999999 999999999999999999986
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=89.25 E-value=0.24 Score=35.27 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=40.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.|+..|...+. .++|..+|++.+++ +..-+.+.|+.|+..|++.+.
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4567777876421 27999999999999 999999999999999999965
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.06 E-value=0.43 Score=41.11 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=36.9
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP 230 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 230 (353)
++.++..+. .++..|||..||+|.++....+. +.+++++|+ +..++.++
T Consensus 202 ~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 202 IERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 444554432 45679999999999999998776 579999999 66666554
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.33 Score=37.51 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=48.0
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCC-CCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTK-NKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~-~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|...+ ++.|++||.+.+.-. .+.+..-+.|.|+.|+..|++.+..-++ ...+|.+.
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~-g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE-GESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT-SCEEEECC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC-CceEEEEC
Confidence 456777888887753 589999999998311 1117888999999999999999874222 24567654
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.38 Score=37.69 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=48.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+.-+.-|++.|...+ ++.|++||.+.+ ++ +..-+-|.|+.|+..|++.+..-++ ...+|...
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 92 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSK-SGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETT-TEEEEEES
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCC-CceEEEec
Confidence 566777999998753 589999999998 56 8889999999999999999874222 24567653
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=88.64 E-value=0.31 Score=39.76 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=45.8
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccc-eeeeccCCCCccceecccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSV-VECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~-l~~~~~~g~~~~~y~~t~~ 101 (353)
--...|+..|...+ ++.|+.+||+.+|+ ..+-++|-|+.|...|+ +... ...|.+...
T Consensus 21 ~R~~~Il~~L~~~~--~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE------TTEEECCTT
T ss_pred HHHHHHHHHHHHcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE------CCEEEECCc
Confidence 44567888887532 37999999999999 99999999999999999 7654 345766643
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=88.60 E-value=1.4 Score=37.72 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=63.6
Q ss_pred CCeEEEEcCCchHHHHHHHHH-------CCCCeEEEecc----hHH------------------------Hh-------h
Q 018576 191 IKQLVDVGGNLGVTLQAITSK-------YPYIKGINFDQ----PHV------------------------IE-------H 228 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~-------~ 228 (353)
+..|+|+|+-.|..+..++.. .++-++.++|. |+. ++ .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 579999999999988876642 36788999993 221 00 0
Q ss_pred CCC----CCCeeEEeCCCCCCC-------CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 229 APL----HPHIEHVAGDMFQSV-------PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 229 a~~----~~rv~~~~~d~~~~~-------p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
.+. .++|+++.|++.+-+ |.. |++++-.=++ +.....|..+...|+|||.+++=+
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcC
Confidence 011 267999999987622 322 6666654221 335688999999999999998755
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=88.28 E-value=0.22 Score=42.81 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=42.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..++..|...++ ++.|..+||+.+++ ++..+.++++-|+..|+|.+.+
T Consensus 159 ~q~~vL~~L~~~~~-~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 159 VEFTILAIITSQNK-NIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHHHHHHTTTT-CCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHHhCCC-CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC
Confidence 45667788876431 25999999999999 9999999999999999999974
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=87.11 E-value=0.36 Score=30.48 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=41.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+-.|++.+..+| |-+.++..|+..|+ +.+-+-.+|+-|++.|++..+
T Consensus 12 e~~lL~yIr~sG--GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNG--GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecc
Confidence 445778888865 78999999999999 999999999999999999764
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=87.03 E-value=0.39 Score=43.91 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc----CCCCccceecc
Q 018576 24 VLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD----GSGARRRYSLN 99 (353)
Q Consensus 24 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~----~g~~~~~y~~t 99 (353)
..+++++...+..|++.|. . +|.|..|||+.+|+ .+.-+.++++-|...|++.+... .|+....|.++
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~---~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~ 83 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K---SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKIS 83 (380)
T ss_dssp ----------CCCSHHHHH-H---SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEEC
T ss_pred cCchhHHHHHHHHHHHHHH-c---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEc
Confidence 4567788888889999999 6 59999999999999 99999999999999999988521 12223346666
Q ss_pred cccc
Q 018576 100 SVSK 103 (353)
Q Consensus 100 ~~~~ 103 (353)
+...
T Consensus 84 ~~~~ 87 (380)
T 2hoe_A 84 PNCA 87 (380)
T ss_dssp GGGC
T ss_pred cCCC
Confidence 6544
|
| >4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=86.92 E-value=0.38 Score=35.79 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCC------CCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLP------TKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSVSK 103 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~~~ 103 (353)
.++-|+..|.. +|.+--+|++.+. + ++.-+...|+-|+..|+|+.... +|.....|++|+.|+
T Consensus 10 l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~ 81 (115)
T 4esb_A 10 LEGCILYIISQ----EEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGL 81 (115)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHH
Confidence 34446667776 4899999998884 6 89999999999999999997631 232334599998887
Q ss_pred ccc
Q 018576 104 YYV 106 (353)
Q Consensus 104 ~l~ 106 (353)
..+
T Consensus 82 ~~l 84 (115)
T 4esb_A 82 EQL 84 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
| >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} | Back alignment and structure |
|---|
Probab=86.78 E-value=0.35 Score=37.21 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=44.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceec
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSL 98 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~ 98 (353)
+-.|++.|.. ||.|+.+||+.+|+ +...+.-.|..|+..|++.+. +-|. -..|++
T Consensus 13 k~~ILE~Lk~----G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V-k~GK-~ayw~L 67 (165)
T 2vxz_A 13 LRDILALLAD----GCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV-AFGN-VALVCL 67 (165)
T ss_dssp HHHHHHHHTT----CCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE-EETT-EEEEES
T ss_pred HHHHHHHHHh----CCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE-EEcc-EEEEEe
Confidence 3456777874 59999999999999 999999999999999999998 3342 344544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=86.73 E-value=4 Score=30.98 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=52.8
Q ss_pred CCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC--C-----CCCcEEEeccccccC
Q 018576 191 IKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS--V-----PKGDAIFLKWILHDW 261 (353)
Q Consensus 191 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--~-----p~~D~i~~~~~Lh~~ 261 (353)
..+|+=+|||. |......+... +.+++++|. ++.++.+++ ..+.++.+|..++ + ..+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 35889999974 54444444443 568999998 666665554 4678899998762 1 12387776522
Q ss_pred CchHHHHHHHHHHHhCCCCCEEEE
Q 018576 262 DDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 262 ~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
++.....+.. ..+.+.|+.+++.
T Consensus 81 ~~~~n~~~~~-~a~~~~~~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVA-SARAKNPDIEIIA 103 (140)
T ss_dssp CHHHHHHHHH-HHHHHCSSSEEEE
T ss_pred ChHHHHHHHH-HHHHHCCCCeEEE
Confidence 1222233333 4555677777654
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=86.62 E-value=0.26 Score=41.60 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=42.9
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+.|+.++|+.+++ .+..+.+.++.|+..|+|.+.. ++ ....+.+|+.|..+.
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~-~~-R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV-TK-RGQILNITEKGLDVL 78 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-ET-TEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEE-cC-CeEEEEECHHHHHHH
Confidence 6899999999999 9999999999999999999862 11 145677887777655
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=86.36 E-value=0.31 Score=41.16 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=39.9
Q ss_pred CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 51 SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 51 t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+..+||+.+++ ++..+.+.|+.|+..|++++.+ +..+.+|+.|..+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG-----DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT-----TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC-----CccEEECHHHHHHH
Confidence 44999999999 9999999999999999999872 35688888777554
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=86.27 E-value=0.36 Score=35.08 Aligned_cols=46 Identities=30% Similarity=0.339 Sum_probs=37.5
Q ss_pred HhChhhhhhhcCCCCCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|+..|..+ +.+ |..+||+.+|+ ...-+++-|+.|+..|+|...
T Consensus 30 ~~~I~~~l~~g---~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 30 IEHIFEELDGN---EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp HHHHTTSSBTT---EEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhhhcCC---CcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 44455455442 355 99999999999 999999999999999999987
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=86.15 E-value=0.68 Score=35.49 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhC-----CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQL-----PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
+--+.-|++.|...+ .++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...++ ...+|.++
T Consensus 17 T~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~-~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDG-GHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSS-SSCEEEES
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCC-CceEEEeC
Confidence 345666888887631 0389999999998 56 8888999999999999999873222 24567653
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=85.59 E-value=0.4 Score=36.83 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|.... +|.|..+|++.++.+.+.++.-+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4566777787621 489999999999821111888999999999999999997
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=85.28 E-value=0.36 Score=45.55 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+..|+..|.+.+ ++++|..|||+.+++ ++..+.|+|+-|+..|+|++.+
T Consensus 405 ~q~~vl~~l~~~~-~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 405 EEIYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp HHHHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC
Confidence 4566777887641 138999999999999 9999999999999999999873
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=85.26 E-value=0.34 Score=36.39 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... +|.|..+|++.++...+.++.-+.++|+-|+..|+|.+.
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 456677778775 489999999999741111688999999999999999997
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=85.12 E-value=0.64 Score=37.50 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=48.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhC--------CCCCCCCcCcHHHHHHHHhcccceeeecc--C-CCCccceecccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQL--------PTKNKDAPTMLDRILRLLASYSVVECSLD--G-SGARRRYSLNSV 101 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~-g~~~~~y~~t~~ 101 (353)
+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|+..|+|+.... + +.....|.+|+.
T Consensus 3 l~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~ 74 (179)
T 1yg2_A 3 LPHVILTVLST----RDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQA 74 (179)
T ss_dssp HHHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHH
T ss_pred hHHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChH
Confidence 35567778877 499999999998 56 88999999999999999997531 1 122456999999
Q ss_pred ccc
Q 018576 102 SKY 104 (353)
Q Consensus 102 ~~~ 104 (353)
|+.
T Consensus 75 G~~ 77 (179)
T 1yg2_A 75 GRS 77 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 | Back alignment and structure |
|---|
Probab=84.84 E-value=0.18 Score=45.56 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccCC
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~~ 108 (353)
-+..++..|... +++|..+||+.+++ ++.-++|.|+.|...|++++. .....+|+.|..+...
T Consensus 21 r~~~iL~~l~~~---~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~------~~gi~LT~~G~~~~~~ 83 (345)
T 2o0m_A 21 ERFQILRNIYWM---QPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS------KSGMTLTERGLEVYQG 83 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE------ecceEEcHHHHHHHHH
Confidence 456788888775 48999999999999 999999999999999999854 2347788888766644
|
| >2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2 | Back alignment and structure |
|---|
Probab=84.66 E-value=0.42 Score=39.23 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=41.3
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
|.+..+||+.+++ .+.-++..++-|...|+++.. .....+|+.|..+.
T Consensus 30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~------~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK------QRGHFLTLKGKEIR 77 (200)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--------CEEECHHHHHHH
T ss_pred CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe------CCCeEECHHHHHHH
Confidence 8999999999999 999999999999999999986 35678888877443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=84.28 E-value=3.7 Score=37.35 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=61.6
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeE-EEecc-hHHHhhCCC-CCCeeEEeCCCCCC----C------CCC-cEEEeccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKG-INFDQ-PHVIEHAPL-HPHIEHVAGDMFQS----V------PKG-DAIFLKWI 257 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~----~------p~~-D~i~~~~~ 257 (353)
.+++|+-||.|.++..+.+. +.++ .++|. +..++..+. .+...++.+|+.+. + +.. |+++...-
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 58999999999999999887 3554 58887 444444333 35678888888752 1 123 99999888
Q ss_pred cccCCc-------hHHHHHHHH---HHHhCCCCCEEEEEeeec
Q 018576 258 LHDWDD-------EHCLKLLKN---CYKSVPEDGKVIVVELML 290 (353)
Q Consensus 258 Lh~~~~-------~~~~~~L~~---~~~~L~pgG~l~i~e~~~ 290 (353)
...++. +....++.+ +...++| .++++|.+.
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~ 121 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVP 121 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecch
Confidence 777752 112233333 3344566 577777764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=84.11 E-value=1.4 Score=40.54 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCchHHHHHHH-HHCCC-CeEEEecc-hHHHh
Q 018576 189 ANIKQLVDVGGNLGVTLQAIT-SKYPY-IKGINFDQ-PHVIE 227 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~ 227 (353)
++...++|||++.|.++..++ +..+. .+++.++. |...+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~ 266 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQ 266 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 567899999999999999988 56765 79999998 55444
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=83.66 E-value=5.4 Score=34.42 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred CeEEEEcCCc--hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHH
Q 018576 192 KQLVDVGGNL--GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLK 268 (353)
Q Consensus 192 ~~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~ 268 (353)
.+|.=||+|. +.++..+.+..++.++++.|. ++.++.+.+.........|..+.....|+|++.- +......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 5788899885 334455666544678999998 4444433322111112223322233349888763 3445578
Q ss_pred HHHHHHHh-CCCCCEEE
Q 018576 269 LLKNCYKS-VPEDGKVI 284 (353)
Q Consensus 269 ~L~~~~~~-L~pgG~l~ 284 (353)
+++++... |+|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876555
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.87 E-value=0.67 Score=35.56 Aligned_cols=34 Identities=6% Similarity=0.043 Sum_probs=32.2
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..|.++||+.+|+ ++.-+.+.|+.|...|++...
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 5799999999999 999999999999999999985
|
| >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.85 E-value=0.74 Score=34.49 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=38.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
....|.+.+.. .|.++.+|++.+++ ++..++++|+.|+..|.+...
T Consensus 8 l~~~i~~~~~~----~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 8 IWQKAEPLFGD----EPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp HHHHHGGGCSS----SCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34455666654 27799999999999 999999999999999999887
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=82.48 E-value=0.73 Score=38.74 Aligned_cols=48 Identities=10% Similarity=0.143 Sum_probs=41.0
Q ss_pred CCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 50 LSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 50 ~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
.+..+||+.+++ .+..+.+.++.|+..|++++.+ ...+.+|+.|..+.
T Consensus 25 ~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~-----~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 25 PLRARIAERLEQ----SGPTVSQTVARMERDGLVVVAS-----DRSLQMTPTGRTLA 72 (226)
T ss_dssp CBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT-----TSBEEECHHHHHHH
T ss_pred ccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC-----CCCeEECHHHHHHH
Confidence 355999999999 9999999999999999999862 45688998887654
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=1 Score=32.56 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=34.1
Q ss_pred HHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 31 AVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 31 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
.+.++||+..|.. |++|-.|||+.+|+ ....+.|+=++|-
T Consensus 44 l~~R~~l~~~L~~----ge~TQREIA~~lGi----S~stISRi~r~L~ 83 (101)
T 1jhg_A 44 LGTRVRIIEELLR----GEMSQRELKNELGA----GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHH----CCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence 4567999999998 47999999999999 8888888877664
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=82.35 E-value=15 Score=28.19 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-C------CCCCcEEEeccccc
Q 018576 189 ANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-S------VPKGDAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~------~p~~D~i~~~~~Lh 259 (353)
....+|+=+|+|. |......+... +.+++++|. ++.++.++....+..+.+|..+ . ....|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~--- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT--- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence 3467899999874 54444444443 468999998 5566666523346667777643 1 11238777653
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
+++.....+..+.+.+.|..+++.
T Consensus 93 --~~~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 93 --NDDSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp --SCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred --CCcHHHHHHHHHHHHHCCCCeEEE
Confidence 233344455555566666665554
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=82.31 E-value=1.2 Score=40.91 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=44.3
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++..-+..|++.|... ++.|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 13 ~r~~n~~~il~~l~~~---~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHhHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 4445556688899886 59999999999999 999999999999999999885
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=82.06 E-value=1.8 Score=36.46 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=39.0
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+.-|+-.|.. ++.|.++||+.+|+ ++.-|+..|+-|+..|+|.+.
T Consensus 167 ~~~l~~~l~~----~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLLN----GRATVEELSDRLNL----KEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHHS----SEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHhc----CCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe
Confidence 3455556666 59999999999999 999999999999999999876
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=81.76 E-value=1.4 Score=40.90 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=45.5
Q ss_pred HHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 29 MQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 29 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++..-+..|++.|... ++.|..|||+.+|+ .+.-+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~---~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 5566667789999886 59999999999999 999999999999999999885
|
| >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A | Back alignment and structure |
|---|
Probab=80.60 E-value=1.9 Score=32.67 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+|+ +..-+++-|+.|+..|++...
T Consensus 26 ~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 466 89999999999 999999999999999999986
|
| >3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=80.55 E-value=1.2 Score=32.82 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+|+ +..-+++-|+.|+..|+++..
T Consensus 31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 355 89999999999 999999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 353 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 6e-84 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 3e-81 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 5e-77 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 3e-41 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 7e-36 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 1e-35 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 5e-35 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 1e-16 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 3e-10 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 3e-09 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 252 bits (645), Expect = 6e-84
Identities = 108/243 (44%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Query: 113 SLGPALQMIQDKVFLESWSHLKDAILEGGI-PFNRAHGMHAFEYGRVDPRFNKHFNTAMY 171
L + L+ W + K+A+++ I F HG+ +E+ D + N+ FN +M
Sbjct: 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62
Query: 172 NHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL 231
+ + M +LE Y GF I LVDVGG G L+ I SKYP IKGINFD P VIE+AP
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 232 HPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLP 291
IEHV GDMF SVP+GDA+ LK + H+W DE C++ L NC+K++ +GKVI+VE +LP
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182
Query: 292 EVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR-SDLVTGNFWVME 350
E PNTS ESK S +D LM GG+ERT+ ++ L+ +GFS + + + VME
Sbjct: 183 EEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241
Query: 351 FYK 353
FYK
Sbjct: 242 FYK 244
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 245 bits (627), Expect = 3e-81
Identities = 144/242 (59%), Positives = 178/242 (73%)
Query: 110 DGVSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTA 169
DGVS+ M QDKV +ESW HLKDA+L+GGIPFN+A+GM AFEY DPRFNK FN
Sbjct: 1 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60
Query: 170 MYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHA 229
M +H+++ M ILE+Y GF +K LVDVGG G + I SKYP IKGINFD PHVIE A
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 230 PLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289
P +P +EHV GDMF S+PK DA+F+KWI HDW DEHCLK LKNCY+++P++GKVIV E +
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 290 LPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVM 349
LP P++S+ +K HIDV+M+ NPGGKERT+ EF LA GAGF G + N ++M
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 350 EF 351
EF
Sbjct: 241 EF 242
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 235 bits (599), Expect = 5e-77
Identities = 77/245 (31%), Positives = 132/245 (53%), Gaps = 6/245 (2%)
Query: 112 VSLGPALQMIQDKVFLESWSHLKDAILEGGI-PFNRAHGMHAFEYGRVDPRFNKHFNTAM 170
+ L P ++ + D S+ LK I E + F G +++ +P +N FN AM
Sbjct: 1 LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60
Query: 171 YNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP 230
+ + LI + + F ++ +VDVGG G T + I +P +K I FD+P V+E+
Sbjct: 61 ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120
Query: 231 LHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVP---EDGKVIVVE 287
++ +V GDMF S+P DA+ LK+ILH+W D+ CL++LK C ++V + GKV +++
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180
Query: 288 LMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFW 347
+++ + + + ++ +DV M N GKER + E+ L AGF + +TG
Sbjct: 181 MVIDKKKDENQVTQIKLLMDVNMACLN--GKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238
Query: 348 VMEFY 352
++E Y
Sbjct: 239 LIEIY 243
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 143 bits (360), Expect = 3e-41
Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 17/237 (7%)
Query: 129 SWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGF 188
+++ L D + G + +G +E D F+ M L ++Y +
Sbjct: 21 AFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-W 79
Query: 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAG-------- 240
+ ++ ++DVGG G L AI + P+++G + E A +A
Sbjct: 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGD 139
Query: 241 DMFQSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES 300
D + L ++L +W DE L +L+ C +++ G+++V++ +
Sbjct: 140 FFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADV--EGDGADR 197
Query: 301 KSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR-----SDLVTGNFWVMEFY 352
++ +D+ M+T GG+ RT+ E + LA AG + S + +F ++EF
Sbjct: 198 FFSTLLDLRMLT-FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 129 bits (323), Expect = 7e-36
Identities = 44/218 (20%), Positives = 92/218 (42%), Gaps = 13/218 (5%)
Query: 129 SWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGF 188
S++ L DAI G + +G +E P F++ + + +Y +
Sbjct: 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-W 78
Query: 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMF----- 243
N++ ++DVGG G AI + P++ + ++ A + E ++ +
Sbjct: 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 138
Query: 244 ---QSVPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIES 300
K DAI L ++L +W D +++L C +++ G++++ E + +
Sbjct: 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF---N 195
Query: 301 KSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 338
+ + +D+ M+ GG RT+ ++ LA AG
Sbjct: 196 EQFTELDLRMLV-FLGGALRTREKWDGLAASAGLVVEE 232
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 123 bits (311), Expect = 1e-35
Identities = 49/105 (46%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAP 67
+++ +A QLA +VLPM +++ EL + +II KAGPGA++S +IA+QLPT N DAP
Sbjct: 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAP 62
Query: 68 TMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVPNK 109
MLDR+LRLLA Y ++ CS+ +R Y L +V+KY V N+
Sbjct: 63 VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 121 bits (306), Expect = 5e-35
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 6/109 (5%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAG-PGAKLSASDIAAQLP--TKNK 64
D + A L V P + A +L +F+II KA PGA +S S+IA++LP T++
Sbjct: 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHS 61
Query: 65 DAPTMLDRILRLLASYSVVECSL---DGSGARRRYSLNSVSKYYVPNKD 110
D P LDR+LRLLASYSV+ + + GA R Y L+ V KY VP++
Sbjct: 62 DLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 72.6 bits (178), Expect = 1e-16
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 11 QSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTML 70
++ A + + M+++ E+ I II G +S S++ + L + +
Sbjct: 8 KAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKP--ISLSNLVSILQVPSSKIG-NV 64
Query: 71 DRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVPNKD 110
R++R LA E Y+L S+ V D
Sbjct: 65 RRLMRYLAHNGFFEIITKEE---ESYALTVASELLVRGSD 101
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 54.4 bits (131), Expect = 3e-10
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAP 67
DQ + V PMA++ L + + AG + + +A + T P
Sbjct: 3 PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL-LAGA---DTLAGLADRTDTH----P 54
Query: 68 TMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107
L R++R L V+E R +
Sbjct: 55 QALSRLVRHLTVVGVLEGGEKQ---GRPLRPTRLGMLLAD 91
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 51.0 bits (122), Expect = 3e-09
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 18 QLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLL 77
PM ++ L + I + +AA+ T+ P L R++R L
Sbjct: 7 IRLGSLHTPMVVRTAATLRLVDHI----LAGARTVKALAARTDTR----PEALLRLIRHL 58
Query: 78 ASYSVVECSLDGSGARRRYSLNSVSKYYVPN 108
+ ++E G + V + +
Sbjct: 59 VAIGLLEEDAPG-----EFVPTEVGELLADD 84
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.83 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.82 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.79 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.78 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.78 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.75 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.72 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.71 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.69 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.67 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.65 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.64 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.64 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.63 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.6 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.59 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.58 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.58 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.57 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.56 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.54 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.53 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.51 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.5 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.5 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.47 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.45 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.44 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.43 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.4 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.4 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.38 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.34 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.31 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.31 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.3 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.29 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.28 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.27 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.27 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.26 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.26 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.25 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.14 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.04 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.04 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.02 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.01 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.98 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.91 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.84 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.84 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.82 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.74 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.57 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.53 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.36 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.34 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.32 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.31 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.31 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.3 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.23 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.2 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.18 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.15 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.14 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.1 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.09 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.09 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.08 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.08 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.06 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.03 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.0 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.97 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.89 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.87 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.86 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.85 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.85 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.77 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.74 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.72 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.69 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.65 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.57 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.4 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 97.18 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.15 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.11 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 97.08 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 97.0 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.93 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.9 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.75 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.71 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.7 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.46 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.44 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 96.31 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 96.23 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 96.15 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 96.08 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 96.06 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 96.0 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.78 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.55 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 95.48 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.34 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 95.32 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 95.14 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 95.13 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 95.08 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 95.02 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.89 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 94.81 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 94.78 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 94.71 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.55 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 94.54 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.47 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 94.41 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.41 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 94.29 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 94.28 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 94.12 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.04 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 93.96 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 93.88 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.85 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 93.67 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 93.65 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 93.56 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 93.52 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 93.36 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 93.32 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 93.31 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 93.26 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.08 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 93.03 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 92.78 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.77 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.73 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 92.73 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 92.71 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 92.66 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 92.25 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 92.23 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 92.21 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 92.14 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 92.05 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.02 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 91.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.51 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 91.26 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 91.12 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 90.94 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 90.68 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.61 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.46 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 90.32 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 90.26 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 89.94 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 89.7 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 88.45 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.39 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 88.31 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 87.49 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 87.46 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 87.25 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 87.04 | |
| d1y0ua_ | 89 | Putative arsenical resistance operon repressor AF0 | 86.74 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.92 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 85.91 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 85.67 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.0 | |
| d3e5ua1 | 80 | Chlorophenol reduction protein CprK {Desulfitobact | 84.4 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 84.09 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 83.94 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 83.81 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.36 | |
| d1s6la1 | 60 | Alkylmercury lyase MerB {Escherichia coli [TaxId: | 83.1 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 82.79 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.72 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 82.39 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 80.54 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 80.44 | |
| d2p8ta1 | 69 | Hypothetical protein PH0730 {Pyrococcus horikoshii | 80.43 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.17 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.2e-45 Score=320.63 Aligned_cols=241 Identities=44% Similarity=0.747 Sum_probs=208.7
Q ss_pred CChHHHHHHhcChhHHHhhhhhHHHHhcCC-CcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccCC
Q 018576 112 VSLGPALQMIQDKVFLESWSHLKDAILEGG-IPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFAN 190 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 190 (353)
.|+++++.+++.|.+++.|.+|.+++++|. ++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.++.+++
T Consensus 2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~ 81 (244)
T d1fp1d2 2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG 81 (244)
T ss_dssp CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 378899999989999999999999999876 5799999999999999999999999999999999888899999986788
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHHH
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L 270 (353)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+|+++.++|
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL 161 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 161 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence 89999999999999999999999999999999999999988899999999999999988999999999999999999999
Q ss_pred HHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee-CCceEEE
Q 018576 271 KNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV-TGNFWVM 349 (353)
Q Consensus 271 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~-~~~~~vi 349 (353)
++++++|+|||+|+|.|.+.++.+...........+++.|+..+ +|++||.+||+++|++|||+.+++++. .+.++||
T Consensus 162 ~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~vi 240 (244)
T d1fp1d2 162 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 240 (244)
T ss_dssp HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEE
T ss_pred HHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEE
Confidence 99999999999999999998876554433344566788888766 899999999999999999999998755 5889999
Q ss_pred EEeC
Q 018576 350 EFYK 353 (353)
Q Consensus 350 ~~~~ 353 (353)
|++|
T Consensus 241 E~~K 244 (244)
T d1fp1d2 241 EFYK 244 (244)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.7e-44 Score=312.30 Aligned_cols=241 Identities=59% Similarity=1.051 Sum_probs=219.5
Q ss_pred CChHHHHHHhcChhHHHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccCCC
Q 018576 112 VSLGPALQMIQDKVFLESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANI 191 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 191 (353)
.|+++++.+.+++.+++.|.+|.+++|+|+++|+..+|.++|+|+.++|+..+.|+++|...+......+++.++.+++.
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~ 82 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 82 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence 47889998888899999999999999999999999999999999999999999999999998888888899988844667
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHHHH
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLK 271 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~ 271 (353)
.+|||||||+|.++..+++++|+++++++|+|++++.++..+|++++.+|+++++|.+|+|+++++||+|+++++.++|+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~ 162 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 162 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEEEEE
Q 018576 272 NCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEF 351 (353)
Q Consensus 272 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~vi~~ 351 (353)
+++++|+|||+++|+|.+.++.............+++.|+.++.+|++||.+||+++|++|||+.+++++.+...+|||+
T Consensus 163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~ 242 (243)
T d1kyza2 163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242 (243)
T ss_dssp HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence 99999999999999999987654443333334567888887766899999999999999999999999999999999997
Q ss_pred e
Q 018576 352 Y 352 (353)
Q Consensus 352 ~ 352 (353)
+
T Consensus 243 ~ 243 (243)
T d1kyza2 243 L 243 (243)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.5e-42 Score=301.31 Aligned_cols=239 Identities=32% Similarity=0.585 Sum_probs=211.0
Q ss_pred ChHHHHHHhcChhHHHhhhhhHHHHhcCC-CcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccCCC
Q 018576 113 SLGPALQMIQDKVFLESWSHLKDAILEGG-IPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANI 191 (353)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 191 (353)
++.+++.+..+|.++..|..|.+.++++. ++|+..+|.++|+|+.++|+..+.|+++|...+......+.+....+++.
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~ 81 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL 81 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence 46778888889999999999999999885 58999999999999999999999999999988877665655432226778
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHHHH
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKLLK 271 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~L~ 271 (353)
.+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|.+|+|+++++||+|+|+++.++|+
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~ 161 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK 161 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHH
Confidence 89999999999999999999999999999999999999988999999999999888779999999999999999999999
Q ss_pred HHHHhCCCC---CEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeCCceEE
Q 018576 272 NCYKSVPED---GKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWV 348 (353)
Q Consensus 272 ~~~~~L~pg---G~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~~~~~v 348 (353)
+++++|+|| |+++|+|.+.++.............+++.|++ + +|++||.+||+++|++|||+.+++++.+++.++
T Consensus 162 ~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~sv 239 (244)
T d1fp2a2 162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239 (244)
T ss_dssp HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEE
Confidence 999999998 89999999988765543323333456666665 4 899999999999999999999999999999999
Q ss_pred EEEeC
Q 018576 349 MEFYK 353 (353)
Q Consensus 349 i~~~~ 353 (353)
||++|
T Consensus 240 IE~~p 244 (244)
T d1fp2a2 240 IEIYP 244 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=5.5e-40 Score=288.30 Aligned_cols=238 Identities=23% Similarity=0.387 Sum_probs=203.9
Q ss_pred CChHHHHHHhcChhHH-HhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccCC
Q 018576 112 VSLGPALQMIQDKVFL-ESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFAN 190 (353)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 190 (353)
.++++|+.+.....+. .+|.+|.+++|+|.++++..+|.++|+|+.++|+..+.|+++|...+....+.+++.++ +++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~ 81 (256)
T d1qzza2 3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA 81 (256)
T ss_dssp TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence 4678888765333343 37999999999999999999999999999999999999999999988888889999998 999
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCCCCCCC-cEEEeccccccCC
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQSVPKG-DAIFLKWILHDWD 262 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~ 262 (353)
..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|+.++.+|+++++|.+ |+|++.++||+|+
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~ 161 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS 161 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence 99999999999999999999999999999999888876653 378999999999988876 9999999999999
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
++++.++|++++++|||||+|+|+|...++..... ......+++.|+..+ +|+.||.++|+++|++|||+.+++.+.
T Consensus 162 d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~ 238 (256)
T d1qzza2 162 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTS 238 (256)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc--HHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEe
Confidence 99999999999999999999999998765543221 234456788888876 899999999999999999999999876
Q ss_pred C-----CceEEEEEeC
Q 018576 343 T-----GNFWVMEFYK 353 (353)
Q Consensus 343 ~-----~~~~vi~~~~ 353 (353)
+ ...+|+|+.+
T Consensus 239 ~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 239 GSTTLPFDFSILEFTA 254 (256)
T ss_dssp CCSSCSSCEEEEEEEE
T ss_pred CCcCccCceEEEEEEe
Confidence 4 3579999863
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=2.6e-38 Score=277.62 Aligned_cols=222 Identities=21% Similarity=0.391 Sum_probs=193.3
Q ss_pred HHhhhhhHHHHhcCCCcchhccCCChhhhcccCchHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHH
Q 018576 127 LESWSHLKDAILEGGIPFNRAHGMHAFEYGRVDPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQ 206 (353)
Q Consensus 127 ~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~ 206 (353)
...|.+|++++|+|+++++..+|.++|+|+.++|+..+.|+.+|...+....+.+++.++ +++..+|||||||+|.++.
T Consensus 18 ~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~ 96 (253)
T d1tw3a2 18 DISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAA 96 (253)
T ss_dssp GGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred cccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHH
Confidence 447899999999999999999999999999999999999999999988888889999999 9999999999999999999
Q ss_pred HHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCCCCCCC-cEEEeccccccCCchHHHHHHHHHHHhCC
Q 018576 207 AITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQSVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVP 278 (353)
Q Consensus 207 ~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~ 278 (353)
.+++++|+++++++|+|++++.+++ .+|++++.+|++++.|.. |+|+++++||+|+++++.++|++++++||
T Consensus 97 ~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk 176 (253)
T d1tw3a2 97 AIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE 176 (253)
T ss_dssp HHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred HHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcC
Confidence 9999999999999999888876654 278999999999877765 99999999999999999999999999999
Q ss_pred CCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeeeC-----CceEEEEEeC
Q 018576 279 EDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVT-----GNFWVMEFYK 353 (353)
Q Consensus 279 pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~~-----~~~~vi~~~~ 353 (353)
|||+|+|.|...+...... .....+++.|+..+ +|+.||.++|+++|+++||+++++...+ ...++|++.|
T Consensus 177 PGG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P 252 (253)
T d1tw3a2 177 PGGRILIHERDDLHENSFN---EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252 (253)
T ss_dssp EEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCcEEEEEeccCCCCCcch---hHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence 9999999998765433221 23345677777766 8999999999999999999998887653 2466777653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.83 E-value=2.2e-20 Score=159.78 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHC--CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCCCcEEEeccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKY--PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPKGDAIFLKWI 257 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~~D~i~~~~~ 257 (353)
.+..+|||||||+|..+..+++.. |+++++++|+ +.|++.|+++ .++.+...|+.+ +.+..|++++.++
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 456799999999999999999864 8899999999 8899888652 467888888876 4444599999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCC-------------CCcccCHHH
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNP-------------GGKERTKHE 324 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~~~t~~~ 324 (353)
+|+++.++..++|++++++|+|||.+++.|...+..+..... .......+....... .-...+.++
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 196 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIET 196 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHH
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHH
Confidence 999998888999999999999999999999887654221100 000000000000000 012358899
Q ss_pred HHHHHHhcCCceeeEeeeCCceEEEEEeC
Q 018576 325 FMTLATGAGFSGIRSDLVTGNFWVMEFYK 353 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~~~~~~vi~~~~ 353 (353)
+.++|+++||+.++++.-......+.+.|
T Consensus 197 ~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 197 HKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 99999999999998864433344444443
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.82 E-value=1.9e-20 Score=160.67 Aligned_cols=152 Identities=16% Similarity=0.267 Sum_probs=116.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~- 249 (353)
..+++..+ +.+..+|||||||+|.++..+++.. .+++++|+ +.+++.|++ .+++.++++|+.+ +++.+
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 45666666 8888999999999999999999885 47999999 778887754 3789999999988 77765
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhh-hCCCCcccCHHHHHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMT-QNPGGKERTKHEFMT 327 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~t~~~~~~ 327 (353)
|+|++.+++|++++. .++|++++++|+|||++++.+...+.... .....+..... .......++.++|.+
T Consensus 82 fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSDWLK 153 (231)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred cccccccccccccCCH--HHHHHHHHHhcCCCcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHHHHHH
Confidence 999999999999775 58999999999999999999987654311 11111111111 111345678899999
Q ss_pred HHHhcCCceeeEee
Q 018576 328 LATGAGFSGIRSDL 341 (353)
Q Consensus 328 ll~~aGf~~v~~~~ 341 (353)
+|+++||+++++..
T Consensus 154 ~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 154 MLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999877654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=7.3e-20 Score=161.86 Aligned_cols=155 Identities=14% Similarity=0.167 Sum_probs=119.4
Q ss_pred hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CC
Q 018576 176 LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SV 246 (353)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~ 246 (353)
.....+....+ ++++.+|||||||+|.++..+++++ +.+++++|+ +.+++.++++ ++++++++|+.+ ++
T Consensus 54 ~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 54 WLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence 33445555555 7888999999999999999999876 579999998 7788777652 689999999988 77
Q ss_pred CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHH
Q 018576 247 PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHE 324 (353)
Q Consensus 247 p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 324 (353)
+.+ |+|++..++|++++. .++|++++++|||||++++.++......... ......+ .. . .....+.++
T Consensus 132 ~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~---~~-~-~~~~~s~~~ 201 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILD---RI-K-LHDMGSLGL 201 (282)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHH---HH-T-CSSCCCHHH
T ss_pred cccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchh---HHHHHHH---Hh-c-cCCCCCHHH
Confidence 765 999999999999864 5899999999999999999998776532211 1111111 11 1 223457899
Q ss_pred HHHHHHhcCCceeeEeee
Q 018576 325 FMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 325 ~~~ll~~aGf~~v~~~~~ 342 (353)
|.++++++||+.+.+...
T Consensus 202 ~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 202 YRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHcCCceEEEEEC
Confidence 999999999998887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.79 E-value=1e-19 Score=158.15 Aligned_cols=147 Identities=17% Similarity=0.283 Sum_probs=116.8
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC--c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG--D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~--D 250 (353)
..+++.++ ..+..+|||||||+|.++..++..+.+ +++++|. +.+++.|++ .+++++.++|+.+ +++.+ |
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 45666666 667789999999999999999887654 8999998 778887764 2568999999987 55544 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHH
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLAT 330 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 330 (353)
+|++.++|||+++++..++|++++++|+|||+++|.+.+..... ...+. ..+.-.||.++|+++|+
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~---------~~~d~-----~d~~~~rs~~~~~~l~~ 226 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCc---------ceecc-----cCCceeCCHHHHHHHHH
Confidence 99999999999999889999999999999999999998754321 11111 11334579999999999
Q ss_pred hcCCceeeEee
Q 018576 331 GAGFSGIRSDL 341 (353)
Q Consensus 331 ~aGf~~v~~~~ 341 (353)
++||++++...
T Consensus 227 ~aGf~ii~~~~ 237 (254)
T d1xtpa_ 227 ESGVRVVKEAF 237 (254)
T ss_dssp HHTCCEEEEEE
T ss_pred HcCCEEEEEEe
Confidence 99999987654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.78 E-value=3.6e-19 Score=153.00 Aligned_cols=151 Identities=17% Similarity=0.284 Sum_probs=116.7
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG-- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~-- 249 (353)
-+++.++ ++++.+|||||||+|.++..+++.. .+++++|+ +.+++.|+++ +++.++++|+.+ +++.+
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 3556666 8899999999999999999999986 47999998 7788877653 679999999988 77765
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhh-hhhCCCCcccCHHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLM-MTQNPGGKERTKHEFMTL 328 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~~~l 328 (353)
|+|++.+++|++++. .++|++++++|||||++++.+...+..+. ...+.+... .......+..+..+|.++
T Consensus 84 D~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 84 DIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ceeeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCHH------HHHHHHHHHhhCCCcccccCCHHHHHHH
Confidence 999999999998764 69999999999999999999987654311 111111111 111113556789999999
Q ss_pred HHhcCCceeeEee
Q 018576 329 ATGAGFSGIRSDL 341 (353)
Q Consensus 329 l~~aGf~~v~~~~ 341 (353)
++++||...++..
T Consensus 156 ~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 156 FSANQLAYQDIQK 168 (234)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCceeEEEE
Confidence 9999998766544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.4e-19 Score=152.87 Aligned_cols=139 Identities=15% Similarity=0.199 Sum_probs=112.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCC-CCCCC--cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQ-SVPKG--DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~-~~p~~--D~i~~~~~ 257 (353)
..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.|++. ++++|+++|+.+ +.+.. |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 45568999999999999999987765 48999999 7888877652 467999999987 55544 99999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
+|++++++..++|++++++|+|||.+++.+...+... ..+. ......++.++|+++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV----------ILDD-----VDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE----------EEET-----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc----------cccc-----CCceeeCCHHHHHHHHHHcCCEEE
Confidence 9999988888999999999999999999998765421 1110 112345789999999999999998
Q ss_pred eEeee
Q 018576 338 RSDLV 342 (353)
Q Consensus 338 ~~~~~ 342 (353)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=6.8e-19 Score=152.33 Aligned_cols=153 Identities=12% Similarity=0.070 Sum_probs=116.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~~ 249 (353)
...+.+.+. +.++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++|+.+|+.+..+.+
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 345666666 88889999999999999999998876 79999999 7788776552 67999999998854544
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHH
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMT 327 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 327 (353)
|+|++..++|++++. .++|++++++|||||++++.++.....+.... ....... .+.....+..+|.+
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATEE------IAQACGV--SSTSDFLTLPGLVG 169 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH------HHHTTTC--SCGGGSCCHHHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChHH------HHHHhcc--CCCcccCCHHHHHH
Confidence 999999999999864 58999999999999999999987654322211 0000000 11233568899999
Q ss_pred HHHhcCCceeeEeee
Q 018576 328 LATGAGFSGIRSDLV 342 (353)
Q Consensus 328 ll~~aGf~~v~~~~~ 342 (353)
+++++||+++.....
T Consensus 170 ~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 170 AFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHcCCEEEEEEeC
Confidence 999999998876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=2.5e-18 Score=144.86 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEeccccccCCchH
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDDEH 265 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~~~ 265 (353)
+..+|||||||+|.++..+. +++++|+ +.+++.++++ ++.++++|+.+ +++.+ |+|++.++||++++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d-- 106 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD-- 106 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-ccccccccccccccccccccccccccccccccc--
Confidence 35689999999999988773 4589999 8888888764 69999999988 66654 99999999999976
Q ss_pred HHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEee
Q 018576 266 CLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 266 ~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~ 341 (353)
..++|++++++|+|||++++.++..... ...... ..........+...+|.+++.++|+++||+.+++..
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIVDRESF-----LGREYE-KNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHH-HTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEecCCcch-----hHHhhh-hccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4689999999999999999998754221 000000 000000001234567999999999999999887664
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=1.3e-17 Score=146.44 Aligned_cols=163 Identities=14% Similarity=0.227 Sum_probs=123.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 249 (353)
...+++.+. +.++.+|||||||+|.++..+++.++ .+++++|+ ++.++.+++ ..++.+...|..+ ++..
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~~ 117 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 117 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hccc
Confidence 456788787 88899999999999999999998875 69999999 666665543 2567777777643 3444
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCC-----ccccccccccchhhhhhCCCCcccCHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNT-----SIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
|.|++..+++++++.....+|++++++|||||+++|.+.+....... ..........++..--.+|+|...+.+
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~ 197 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 197 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchH
Confidence 99999999999998888899999999999999999998765432100 000001112233333446789999999
Q ss_pred HHHHHHHhcCCceeeEeeeC
Q 018576 324 EFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~~ 343 (353)
++.+.++++||+++.+...+
T Consensus 198 ~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 198 MMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHHTTCBCCCCEECH
T ss_pred hhhhhHHhhccccceeeecc
Confidence 99999999999998877653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=1.1e-16 Score=140.45 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=124.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 249 (353)
...+++.+. +.++.+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++...|+.. +|..
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~ 127 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 127 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-cccc
Confidence 456777777 8889999999999999999999998 489999998 544544432 2789999999754 3444
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCC-----CCccccccccccchhhhhhCCCCcccCHH
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVP-----NTSIESKSNSHIDVLMMTQNPGGKERTKH 323 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 323 (353)
|.|++...+.++.......++++++++|+|||++++...+..... ..+.........++..--.+|+|...+.+
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~ 207 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 207 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChh
Confidence 999999999999877778999999999999999999998754321 00000111112233333446789999999
Q ss_pred HHHHHHHhcCCceeeEeeeC
Q 018576 324 EFMTLATGAGFSGIRSDLVT 343 (353)
Q Consensus 324 ~~~~ll~~aGf~~v~~~~~~ 343 (353)
++.++++++||+++++...+
T Consensus 208 ~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 208 MVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHHTTTCEEEEEEECH
T ss_pred hHHHHHHHhchhhcccccch
Confidence 99999999999999887654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=1.5e-16 Score=139.86 Aligned_cols=164 Identities=16% Similarity=0.252 Sum_probs=122.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG 249 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~ 249 (353)
...+++.+. +.++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ ..++.+...|+.. .+..
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~ 126 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-FDEP 126 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-CCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc-cccc
Confidence 456778787 88999999999999999999999986 69999998 445544433 2678888888632 2223
Q ss_pred -cEEEeccccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCc-----cccccccccchhhhhhCCC
Q 018576 250 -DAIFLKWILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTS-----IESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 316 (353)
|.|++...+.|+++ +....++++++++|||||++++...+.++..... .........++..-..+|+
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpg 206 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 206 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCC
Confidence 99999999988876 3467999999999999999999998876531100 0000111223333334678
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeeeCC
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLVTG 344 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~~~ 344 (353)
|...|..++...++++||++..+...+.
T Consensus 207 g~lps~~~~~~~~e~~gl~v~~~~~~~~ 234 (291)
T d1kpia_ 207 GRLPRISQVDYYSSNAGWKVERYHRIGA 234 (291)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCHHHHHhhhcccccccceeeeccc
Confidence 9999999999999999999988877653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.69 E-value=2.3e-17 Score=145.38 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=110.5
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-c
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 250 (353)
.+++.+..+.++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|+++ .+++|+.+|+.+ ++++. |
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD 96 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 96 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence 34444433677899999999999999999998874 78999998 7788877653 368999999987 56655 9
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC-------CCC-ccccccccccchhhhhhCCCCc-ccC
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV-------PNT-SIESKSNSHIDVLMMTQNPGGK-ERT 321 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~g~-~~t 321 (353)
+|++.++||++++. .++|++++++|||||++++.|+..... ... ........+...........+. ...
T Consensus 97 ~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 174 (281)
T d2gh1a1 97 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNI 174 (281)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTG
T ss_pred EEEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999875 589999999999999999999642110 000 0000000111111110001222 222
Q ss_pred HHHHHHHHHhcCCceeeEee
Q 018576 322 KHEFMTLATGAGFSGIRSDL 341 (353)
Q Consensus 322 ~~~~~~ll~~aGf~~v~~~~ 341 (353)
..++..+++++||+.+++..
T Consensus 175 ~~~l~~~l~eaGf~~i~~~~ 194 (281)
T d2gh1a1 175 GMKIPIYLSELGVKNIECRV 194 (281)
T ss_dssp GGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEE
Confidence 34678899999999887654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.6e-16 Score=137.46 Aligned_cols=107 Identities=16% Similarity=0.263 Sum_probs=88.5
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-c
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-D 250 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D 250 (353)
..+...+. ..+..+|||||||+|..+..|++.. .+++++|+ +.|++.|+++ .++.+.++|+.+ ++++. |
T Consensus 31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD 107 (251)
T d1wzna1 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (251)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence 34455555 5667899999999999999999974 58999999 7899888753 479999999988 66655 9
Q ss_pred EEEec-cccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 251 AIFLK-WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 251 ~i~~~-~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+|++. .++|+++.++..++|++++++|+|||++++...
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 99886 688888877888999999999999999988543
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.65 E-value=6.9e-17 Score=118.08 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=81.0
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+.-++...+++++.||+.+++|++|+++||||.|.+++ +|+|++|||+++++ ++.+++.+.|+||+|++.|+|++..
T Consensus 5 e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~--~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~~~ 81 (101)
T d1fp2a1 5 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIIT 81 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcC--CCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceeeec
Confidence 45567789999999999999999999999999998754 69999999999999 2223466999999999999998752
Q ss_pred cCCCCccceecccccccccCCC
Q 018576 88 DGSGARRRYSLNSVSKYYVPNK 109 (353)
Q Consensus 88 ~~g~~~~~y~~t~~~~~l~~~~ 109 (353)
+ ++++|.+|+.|+.|+.+.
T Consensus 82 ~---~~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 82 K---EEESYALTVASELLVRGS 100 (101)
T ss_dssp S---SSEEEEECHHHHTTSTTS
T ss_pred C---CCCeEecCHHHHHhhcCC
Confidence 2 357899999999777653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.64 E-value=4e-16 Score=132.86 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=104.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC-CCCCC-cEEEeccccccCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ-SVPKG-DAIFLKWILHDWD 262 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~-~~p~~-D~i~~~~~Lh~~~ 262 (353)
+..+.+|||||||+|.++..+++.. .+++++|+ +.+++.++++ .++.++.+|+.+ +.++. |+|++..+|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 4457799999999999999998875 47999999 7788888653 579999999877 44444 9999999999997
Q ss_pred chHHHHHHHHHH-HhCCCCCEEEEEeeecCCCCCC-----ccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCce
Q 018576 263 DEHCLKLLKNCY-KSVPEDGKVIVVELMLPEVPNT-----SIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSG 336 (353)
Q Consensus 263 ~~~~~~~L~~~~-~~L~pgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 336 (353)
++ .++|++++ ++|+|||.+++..+........ ............... ......++.++++++++++||++
T Consensus 96 d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~l~~~l~~~Gf~i 171 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGLQV 171 (225)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTCEE
T ss_pred CH--HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc--eeeeeccCHHHHHHHHHHCCCEE
Confidence 65 58899998 7899999999976532110000 000000000000111 11345678999999999999998
Q ss_pred eeEe
Q 018576 337 IRSD 340 (353)
Q Consensus 337 v~~~ 340 (353)
++..
T Consensus 172 ~~~~ 175 (225)
T d2p7ia1 172 TYRS 175 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=2.5e-16 Score=133.82 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC--cEEEeccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG--DAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh 259 (353)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.|++. ..+.++.+|+.+ +++.+ |+|++.+++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 45679999999999999999985 568999999 7888877652 568899999988 67655 9999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
++++.+..++|+++.++|+|||++++....
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 998888889999999999999999987764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.63 E-value=7.8e-16 Score=128.34 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=86.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CCCCC-cEEEecccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SVPKG-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~-D~i~~~~~L 258 (353)
+..+.+|||||||+|..+..++++ ..+++++|+ +.+++.+++ .+++++...|+.+ +.++. |+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 444679999999999999999998 468999999 667876643 2678999999988 44445 999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|++++++..++|++++++|+|||++++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99998888999999999999999999987754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.60 E-value=1.7e-15 Score=128.63 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=109.3
Q ss_pred hccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC----CCCCCeeEEeCCCCCC--CCCC--cEEEe
Q 018576 184 SYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA----PLHPHIEHVAGDMFQS--VPKG--DAIFL 254 (353)
Q Consensus 184 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~~--~p~~--D~i~~ 254 (353)
.++ +.++.+|||||||+|.++..+++..|+.+++++|. +.+++.+ .+++++..+.+|...+ +... |++++
T Consensus 69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i 147 (230)
T d1g8sa_ 69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI 147 (230)
T ss_dssp CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence 444 77889999999999999999999999999999999 6676644 4457888888888763 2222 77777
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCC
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGF 334 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 334 (353)
...+|++. +...+++++++.|||||++++.......+... ......+++.+.|+++||
T Consensus 148 ~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~--------------------~~~~~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 148 YEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKARSIDVTK--------------------DPKEIFKEQKEILEAGGF 205 (230)
T ss_dssp EECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS--------------------CHHHHHHHHHHHHHHHTE
T ss_pred eccccchH--HHHHHHHHHHHhcccCceEEEEeeccccCCCC--------------------CHHHHHHHHHHHHHHcCC
Confidence 77777654 45788999999999999999988654432111 111234678899999999
Q ss_pred ceeeEeeeCC----ceEEEEEe
Q 018576 335 SGIRSDLVTG----NFWVMEFY 352 (353)
Q Consensus 335 ~~v~~~~~~~----~~~vi~~~ 352 (353)
++++...+.+ +..++-.|
T Consensus 206 ~ive~idL~py~~~H~~vvg~y 227 (230)
T d1g8sa_ 206 KIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEecCCCCcCCeEEEEEEe
Confidence 9999887743 33455444
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.60 E-value=1.1e-15 Score=111.77 Aligned_cols=101 Identities=49% Similarity=0.813 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+|++..-+.++++.+++.+.+|++|++|||+|+|.+.|+++++|..||+..++.++|..+..++|+||.|++.|+|++..
T Consensus 3 ~dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~ 82 (107)
T d1kyza1 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSV 82 (107)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEee
Confidence 46667778889999999999999999999999999987667899999999999976655778999999999999998753
Q ss_pred ---cCCCCccceecccccccccCC
Q 018576 88 ---DGSGARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 88 ---~~g~~~~~y~~t~~~~~l~~~ 108 (353)
++|.....|.+|+.++.|+.+
T Consensus 83 ~~~~dg~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 83 RTQQDGKVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp EECTTSCEEEEEEECHHHHHHSCC
T ss_pred ecCCCCCeeeEEecchhHHhhcCC
Confidence 233334579999999998865
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.59 E-value=2.7e-15 Score=124.58 Aligned_cols=110 Identities=10% Similarity=0.080 Sum_probs=90.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------------------CCeeEEeC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------------------PHIEHVAG 240 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~rv~~~~~ 240 (353)
++...+. .+++.+|||||||+|..+..|+++ +.+++++|+ +.+++.++++ ..+++..+
T Consensus 11 ~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 11 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 3445555 778899999999999999999997 689999999 7788877642 34678888
Q ss_pred CCCCCCC--C-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 241 DMFQSVP--K-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 241 d~~~~~p--~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
|+++..+ . . |+|++..++|+++++....++++++++|||||++++.......
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 8887322 2 2 9999999999999888899999999999999999887765443
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.58 E-value=1.5e-15 Score=109.01 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=79.2
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 8 ERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+.+++.+.+++++.+++.+.+|++|+++|||+.|.. ||.|++|||+++|+ +++.+.|+||+|++.|+|++.
T Consensus 3 ~~d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~----gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~- 73 (92)
T d1qzza1 3 PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG- 73 (92)
T ss_dssp CCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC-
T ss_pred CcchhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC----CCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeee-
Confidence 456889999999999999999999999999999987 59999999999999 999999999999999999986
Q ss_pred cCCCCccceecccccccccC
Q 018576 88 DGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 88 ~~g~~~~~y~~t~~~~~l~~ 107 (353)
+++ ...|++|+.|..+..
T Consensus 74 ~d~--~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 74 EKQ--GRPLRPTRLGMLLAD 91 (92)
T ss_dssp CC---CCCCEECTTGGGGST
T ss_pred cCC--CceecccHHHHhccC
Confidence 222 456888988887753
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.58 E-value=2.4e-15 Score=106.69 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCC
Q 018576 13 FAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGA 92 (353)
Q Consensus 13 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~ 92 (353)
+.. +....+++.+.+|++|+++|||+.|.. ||+|++|||+++|+ ++..+.|+||+|++.|+|++. +
T Consensus 3 ~~~-l~~l~~~~~~~aL~~av~L~ifd~l~~----gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~-----~ 68 (85)
T d1tw3a1 3 LRT-LIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED-----A 68 (85)
T ss_dssp HHH-HHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----E
T ss_pred HHH-HHHHHchHHHHHHHHHHHcCcHHHhcc----CCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEec-----C
Confidence 344 445588899999999999999999987 59999999999999 999999999999999999986 3
Q ss_pred ccceecccccccccCCC
Q 018576 93 RRRYSLNSVSKYYVPNK 109 (353)
Q Consensus 93 ~~~y~~t~~~~~l~~~~ 109 (353)
++.|.+|+.|+.+..++
T Consensus 69 ~~~y~lt~~s~~L~~Dh 85 (85)
T d1tw3a1 69 PGEFVPTEVGELLADDH 85 (85)
T ss_dssp TTEEEECTTGGGGSTTS
T ss_pred CCeEecCHHHHHhhcCC
Confidence 68999999999988764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.57 E-value=5e-16 Score=134.04 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC-CCCCC-cEEEec-ccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ-SVPKG-DAIFLK-WILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~-~~p~~-D~i~~~-~~Lh~ 260 (353)
++.+|||||||+|.++..+++.. .+++++|+ +.|++.|+++ .+++++++|+.+ +.++. |+|++. +++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 45799999999999999999985 48999999 7888887653 479999999987 55555 999875 67776
Q ss_pred CC-chHHHHHHHHHHHhCCCCCEEEEE
Q 018576 261 WD-DEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 261 ~~-~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
+. .++..++|++++++|+|||.+++.
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 64 556789999999999999998863
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.56 E-value=7.7e-15 Score=126.91 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=83.5
Q ss_pred HHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCC-CCC-C-C
Q 018576 181 ILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQ-SVP-K-G 249 (353)
Q Consensus 181 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~-~ 249 (353)
+++.+. +++.+|||||||+|..+..+++... .+++|+|+ +.+++.|++ ..++.+.++|+.. +.. . .
T Consensus 17 lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLYT--KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HHHHHC--CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred HHHHhC--CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence 444443 5678999999999999999988743 47999999 778887753 2469999999976 442 3 3
Q ss_pred -cEEEeccccccC--CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 -DAIFLKWILHDW--DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 -D~i~~~~~Lh~~--~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++..++|++ +.+...++|+++.++|+|||++++..+
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 999999999986 345678999999999999999988643
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.54 E-value=1e-14 Score=106.77 Aligned_cols=103 Identities=44% Similarity=0.694 Sum_probs=84.7
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcC-CCCCCCHHHHHHhCCCC--CCCCcCcHHHHHHHHhcccce
Q 018576 7 GERDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAG-PGAKLSASDIAAQLPTK--NKDAPTMLDRILRLLASYSVV 83 (353)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~~~t~~ela~~~~~~--~~~~~~~l~r~L~~L~~~g~l 83 (353)
++|++..-+.++++.+++.+.+|++|++|||+|+|...| +++++|++|||..++++ +|..+..|.|+||.|++.|+|
T Consensus 1 ~~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf 80 (110)
T d1fp1d1 1 QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVL 80 (110)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSE
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcc
Confidence 467888899999999999999999999999999999865 34569999999998752 333345799999999999999
Q ss_pred eeec---cCCCCccceecccccccccCCC
Q 018576 84 ECSL---DGSGARRRYSLNSVSKYYVPNK 109 (353)
Q Consensus 84 ~~~~---~~g~~~~~y~~t~~~~~l~~~~ 109 (353)
++.. ++|.....|.+|+.++.|+.++
T Consensus 81 ~~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 81 TSTTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccccCCCCCeeeEEecchhhHhhcCCC
Confidence 8653 2332345799999999998765
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.7e-14 Score=121.57 Aligned_cols=130 Identities=8% Similarity=-0.076 Sum_probs=100.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------------------CCCeeEEeCCCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------------------HPHIEHVAGDMF 243 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~ 243 (353)
...+.+|||+|||+|..+..|++. +.++|++|. +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 567789999999999999999996 679999999 677765432 147899999998
Q ss_pred C--CCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcc
Q 018576 244 Q--SVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKE 319 (353)
Q Consensus 244 ~--~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 319 (353)
+ +.+.+ |+|+...++|+++.+....+++++.++|||||++++.....+..... . ....
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-----------------g-pp~~ 182 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-----------------G-PPFY 182 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-----------------C-SSCC
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-----------------C-CCCC
Confidence 7 23333 99999999999998888999999999999999999887765432110 0 0112
Q ss_pred cCHHHHHHHHHhcCCceee
Q 018576 320 RTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 320 ~t~~~~~~ll~~aGf~~v~ 338 (353)
.+.+++.++|.. +|.+..
T Consensus 183 ~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 183 VPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp CCHHHHHHHHTT-TEEEEE
T ss_pred CCHHHHHHHhcC-CCEEEE
Confidence 478899999965 676543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=7.5e-15 Score=126.13 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCC--cEEEec-cccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKG--DAIFLK-WILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~--D~i~~~-~~Lh~~~~ 263 (353)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.|+++....++.+|+.+ +++.+ |+|++. .++|++++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 45679999999999999999876 569999999 8899988876545677888887 77655 999975 78999877
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
. .++|++++++|+|||.+++..+
T Consensus 119 ~--~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 K--DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp H--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred H--HHHHHHHHhhcCcCcEEEEEEC
Confidence 5 5799999999999999998764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.5e-14 Score=126.14 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-CCCeeEEeCCCCC-CCCCC--cEEEeccccccCCc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-HPHIEHVAGDMFQ-SVPKG--DAIFLKWILHDWDD 263 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh~~~~ 263 (353)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+.+ +++.+ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4668999999999999999999999999999999 778888765 4789999999988 77765 99999988876
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 264 EHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 264 ~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+++++++|||||++++..+.
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEEC
T ss_pred ------HHHHHHHhCCCcEEEEEeeC
Confidence 56789999999999998864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.9e-14 Score=125.17 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=96.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHH----HCCCC--eEEEecc-hHHHhhCCCC-------CCee--EEeCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITS----KYPYI--KGINFDQ-PHVIEHAPLH-------PHIE--HVAGD 241 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~~-------~rv~--~~~~d 241 (353)
.+.++..+...++..+|||||||+|.++..+++ .+|+. +++++|+ +.+++.++++ ..+. +...+
T Consensus 28 l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 107 (280)
T d1jqea_ 28 LPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKET 107 (280)
T ss_dssp HHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSC
T ss_pred HHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhh
Confidence 334444443234456899999999998777655 45554 5799998 6677766432 3333 33333
Q ss_pred CC-------CCCCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchh-hh
Q 018576 242 MF-------QSVPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVL-MM 311 (353)
Q Consensus 242 ~~-------~~~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~ 311 (353)
+. .+.+.+ |+|++.++||++++. .++|++++++|+|||.|+|........ . .. .+..++ ..
T Consensus 108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~~~----~-~~--l~~~~~~~~ 178 (280)
T d1jqea_ 108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSSG----W-DK--LWKKYGSRF 178 (280)
T ss_dssp HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTSH----H-HH--HHHHHGGGS
T ss_pred hhhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCcch----H-HH--HHHHHHHhc
Confidence 32 122333 999999999999764 589999999999999999987632210 0 00 011111 11
Q ss_pred hhCCCCcccCHHHHHHHHHhcCCceee
Q 018576 312 TQNPGGKERTKHEFMTLATGAGFSGIR 338 (353)
Q Consensus 312 ~~~~~g~~~t~~~~~~ll~~aGf~~v~ 338 (353)
........++.++|.++|.+.||+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 179 PQDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp CCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred CCCcccccCCHHHHHHHHHHCCCceEE
Confidence 001123456889999999999998543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.2e-14 Score=125.82 Aligned_cols=139 Identities=11% Similarity=-0.074 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CC----------------------------
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PH---------------------------- 234 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~r---------------------------- 234 (353)
.++.+|||||||+|.++..++... ..+++++|+ +.+++.+++. ..
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456799999999998877666553 237999999 7788776532 00
Q ss_pred --e-eEEeCC----CCC-CCCCC--cEEEeccccccCCc--hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCcccccc
Q 018576 235 --I-EHVAGD----MFQ-SVPKG--DAIFLKWILHDWDD--EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKS 302 (353)
Q Consensus 235 --v-~~~~~d----~~~-~~p~~--D~i~~~~~Lh~~~~--~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~ 302 (353)
+ .....+ ... +.+.+ |+|++.++||+++. ++...+++++.+.|||||++++.+.......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~-------- 200 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-------- 200 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE--------
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc--------
Confidence 0 111111 111 33444 99999999999763 4567999999999999999999887543210
Q ss_pred ccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEeee
Q 018576 303 NSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLV 342 (353)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~~~ 342 (353)
...+.. . ....++.++|+++|++|||+++++...
T Consensus 201 -~~~~~~----~-~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 201 -MVGKRE----F-SCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp -EETTEE----E-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -eecccc----c-cccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 000000 0 122468999999999999998887543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.45 E-value=1.7e-13 Score=114.51 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=79.4
Q ss_pred ccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCCC---cEEEec
Q 018576 185 YKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPKG---DAIFLK 255 (353)
Q Consensus 185 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~---D~i~~~ 255 (353)
++ +.++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++ .+++.++.+|... +.+.. ++.++.
T Consensus 52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 55 77889999999999999999999999899999999 778876654 4789999999877 33322 222222
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
..++++ .+...+++++++.|||||++++....
T Consensus 131 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 131 QDIAQK--NQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp ECCCST--THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ecccCh--hhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 334443 33568999999999999999998754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=7.2e-14 Score=120.00 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC--cEEEecccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG--DAIFLKWILHD 260 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~--D~i~~~~~Lh~ 260 (353)
.++.+|||+|||+|.+++.+++. +.+++++|+ +.+++.|+++ -++++..+|+.+..+.+ |+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~- 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc-
Confidence 45689999999999999988775 468999999 7888877652 35688899887655543 9999865443
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
...+++++++++|||||+|++.+.... ..+++.+.++++||+.++..
T Consensus 196 ----~l~~l~~~~~~~LkpGG~lilSgil~~-----------------------------~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----cHHHHHHHHHHhcCCCcEEEEEecchh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 356889999999999999998764311 14577888999999998887
Q ss_pred eeCCce
Q 018576 341 LVTGNF 346 (353)
Q Consensus 341 ~~~~~~ 346 (353)
..+...
T Consensus 243 ~~~~Wv 248 (254)
T d2nxca1 243 AEGEWV 248 (254)
T ss_dssp EETTEE
T ss_pred EECCEE
Confidence 766543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.43 E-value=3.5e-13 Score=111.51 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=83.4
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCCCCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQSVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~p~~- 249 (353)
-+++.++ ..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++ ..++++..+|+++.+++.
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 3556666 66788999999999999999998876 6788888 667766653 256899999998865544
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...+|.. .+...++++++.+.|+|||.++++.
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999999888764 3446789999999999999998753
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4e-13 Score=120.17 Aligned_cols=111 Identities=14% Similarity=0.256 Sum_probs=90.2
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC---------------CCCeeEEeCCC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL---------------HPHIEHVAGDM 242 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d~ 242 (353)
..+++.+. +.+..+|||||||+|.++..+++.++..+++|+|+ +.+++.|++ ..++.++++|+
T Consensus 141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~ 219 (328)
T d1nw3a_ 141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 219 (328)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence 45677776 78889999999999999999999999889999998 666665532 35799999999
Q ss_pred CC-CCCC----CcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 243 FQ-SVPK----GDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 243 ~~-~~p~----~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
.+ ++.+ +|+|++.+.+|. ++..+.|+++++.|||||++++.+.+.+..
T Consensus 220 ~~~~~~~~~~~advi~~~~~~f~---~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 220 LSEEWRERIANTSVIFVNNFAFG---PEVDHQLKERFANMKEGGRIVSSKPFAPLN 272 (328)
T ss_dssp TSHHHHHHHHHCSEEEECCTTTC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred cccccccccCcceEEEEcceecc---hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence 87 5443 388888766653 556789999999999999999988776543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.6e-14 Score=121.69 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCC---CCCCC--cEEE----
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQ---SVPKG--DAIF---- 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~---~~p~~--D~i~---- 253 (353)
..+.+|||||||+|..+..+++..| .+++++|+ +.+++.|+++ .++.++.+|... +++.+ |.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4567999999999999999998755 48999999 7888877642 457777777543 45543 6665
Q ss_pred -eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhc
Q 018576 254 -LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGA 332 (353)
Q Consensus 254 -~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 332 (353)
..+.++++.+ ...++++++++|||||+|++.+...... ..... .........+.+...|.++
T Consensus 131 ~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~~l~~a 193 (229)
T d1zx0a1 131 PLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSK--------YSDITIMFEETQVPALLEA 193 (229)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTT--------CSCHHHHHHHHTHHHHHHT
T ss_pred ccccccccccC--HHHHHHHHHHHcCCCcEEEEEecCCcch-------hhhhh--------hhhcchhhhhHHHHHHHHC
Confidence 5677776544 5689999999999999998754322110 00000 0011112245667778889
Q ss_pred CCceeeEe
Q 018576 333 GFSGIRSD 340 (353)
Q Consensus 333 Gf~~v~~~ 340 (353)
||+...+.
T Consensus 194 gF~~~~i~ 201 (229)
T d1zx0a1 194 GFRRENIR 201 (229)
T ss_dssp TCCGGGEE
T ss_pred CCeeEEEE
Confidence 99876553
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.2e-13 Score=120.02 Aligned_cols=138 Identities=10% Similarity=-0.004 Sum_probs=94.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------C-------------------------
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------P------------------------- 233 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~------------------------- 233 (353)
..++.+|||||||+|.+....+..... +++++|. +.+++.+++. +
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 346789999999999776544444433 8999999 7787766421 0
Q ss_pred --C-eeEEeCCCCCC-------CCC-C-cEEEeccccccCCc--hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccc
Q 018576 234 --H-IEHVAGDMFQS-------VPK-G-DAIFLKWILHDWDD--EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIE 299 (353)
Q Consensus 234 --r-v~~~~~d~~~~-------~p~-~-D~i~~~~~Lh~~~~--~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~ 299 (353)
. ......|+..+ .+. . |+|++.++||+.+. ++..++|++++++|||||+|++........
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~------ 204 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW------ 204 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE------
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcc------
Confidence 0 12344565441 112 2 99999999999763 357899999999999999999988764321
Q ss_pred cccccccchhhhhhCCCCcccCHHHHHHHHHhcCCceeeEe
Q 018576 300 SKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSD 340 (353)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v~~~ 340 (353)
........ .....+.++++++|+++||++++..
T Consensus 205 ----~~~~~~~~----~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 205 ----YLAGEARL----TVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp ----EEETTEEE----ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ----cccCCccc----ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 00000000 1123689999999999999987654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.34 E-value=9.9e-13 Score=109.14 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=77.1
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-C--CCCC--cEEEeccccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-S--VPKG--DAIFLKWILH 259 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~--D~i~~~~~Lh 259 (353)
-.|||||||+|.++..+++.+|+..++++|+ +.++..+.+ .+++.++.+|+.. . ++.+ |.|++.+...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 3799999999999999999999999999998 666655432 3689999999876 2 5554 9888888776
Q ss_pred cCCchH------HHHHHHHHHHhCCCCCEEEEEe
Q 018576 260 DWDDEH------CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 260 ~~~~~~------~~~~L~~~~~~L~pgG~l~i~e 287 (353)
++.... ...+|+.++++|||||.|.|..
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 543322 1479999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=8.6e-13 Score=116.31 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=74.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----------CCeeEEeCCCCC---CCC--CC-c
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----------PHIEHVAGDMFQ---SVP--KG-D 250 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~rv~~~~~d~~~---~~p--~~-D 250 (353)
..+..+|||||||+|..+..|+++ +.+++++|+ +.|++.|++. .+..+...|+.. ..| +. |
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 445679999999999999999987 579999999 7888877542 234556666643 223 34 8
Q ss_pred EEEec-cccccCCc-----hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 251 AIFLK-WILHDWDD-----EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 251 ~i~~~-~~Lh~~~~-----~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+|++. ++++++++ ++..++|++++++|||||+|++..
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 77764 68888754 457789999999999999988843
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.31 E-value=1.2e-12 Score=111.85 Aligned_cols=101 Identities=10% Similarity=0.014 Sum_probs=78.8
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC-
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG- 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~- 249 (353)
.++..++ ..++.+|||+|||+|.++..+++. .|+.+++++|. +++++.|++ ..++++..+|+.+.+++.
T Consensus 76 ~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 76 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 4555555 788899999999999999999987 48889999999 667776654 267999999998866654
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++. ++++ ..+|.+++++|||||+|++..+
T Consensus 155 fD~V~ld-----~p~p--~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 155 YDAVIAD-----IPDP--WNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EEEEEEC-----CSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeeec-----CCch--HHHHHHHHHhcCCCceEEEEeC
Confidence 998863 4443 3779999999999999998654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.30 E-value=1.1e-12 Score=107.62 Aligned_cols=101 Identities=16% Similarity=0.194 Sum_probs=81.0
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCC-CCCC-C
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQ-SVPK-G 249 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~-~~p~-~ 249 (353)
.++..+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.++++ ++++++++|+.+ ..+. .
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 3455555 7788999999999999999998865 48999999 7888877652 689999999876 3332 3
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+|++....++ ...+++.+.+.|||||++++...
T Consensus 101 ~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 99998876654 35789999999999999987653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=2.3e-12 Score=111.31 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=96.2
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~ 248 (353)
...++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|++. +++.+...|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 345666666 8899999999999999999999986 8899999999 7888877652 5788888887665543
Q ss_pred C--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHH
Q 018576 249 G--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFM 326 (353)
Q Consensus 249 ~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 326 (353)
. |.|+ ++++++ .++|+++.++|||||+|++..++.. ..++..
T Consensus 171 ~~~D~V~-----~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~-----------------------------Qv~~~~ 214 (266)
T d1o54a_ 171 KDVDALF-----LDVPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 214 (266)
T ss_dssp CSEEEEE-----ECCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred cceeeeE-----ecCCCH--HHHHHHHHhhcCCCCEEEEEeCccc-----------------------------HHHHHH
Confidence 3 6654 456655 4789999999999999998654321 123455
Q ss_pred HHHHhcCCceeeEee
Q 018576 327 TLATGAGFSGIRSDL 341 (353)
Q Consensus 327 ~ll~~aGf~~v~~~~ 341 (353)
+.+++.||..+++..
T Consensus 215 ~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 215 KKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCceeEEEEE
Confidence 667888998776654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.28 E-value=2.5e-12 Score=110.49 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=86.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHH-CCCCeEEEecc-hHHHhhCCC---------CCCeeEEeCCCCC-C
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSK-YPYIKGINFDQ-PHVIEHAPL---------HPHIEHVAGDMFQ-S 245 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~ 245 (353)
...++..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|. +++++.|++ .++++++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 445666666 888999999999999999999997 58999999999 778887764 2689999999987 6
Q ss_pred CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 246 VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 246 ~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++++ |.|++ +++++ ..++.+++++|||||++++..++.
T Consensus 164 ~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCcc
Confidence 7765 99876 35555 378999999999999999876543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.5e-11 Score=106.13 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCCCCCC--cEEEeccccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQSVPKG--DAIFLKWILH 259 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~~p~~--D~i~~~~~Lh 259 (353)
..+.+|||+|||+|..++.++..+|+.+++++|. +..++.|+++ .+|+++.+|++++++.. |+|+++--.-
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567999999999999999999999999999999 7777777653 57999999999877653 9999973321
Q ss_pred cC-------------Cc----------hHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCC
Q 018576 260 DW-------------DD----------EHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPG 316 (353)
Q Consensus 260 ~~-------------~~----------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (353)
.- +. ....++++++.+.|+|||.+++ |...
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~-------------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW-------------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS--------------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc--------------------------
Confidence 10 00 2245789999999999999887 3210
Q ss_pred CcccCHHHHHHHHHhcCCceeeEeee-CCceEEEE
Q 018576 317 GKERTKHEFMTLATGAGFSGIRSDLV-TGNFWVME 350 (353)
Q Consensus 317 g~~~t~~~~~~ll~~aGf~~v~~~~~-~~~~~vi~ 350 (353)
...+...+++++.||+.+++..- .+-..++.
T Consensus 240 ---~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~ 271 (274)
T d2b3ta1 240 ---QQGEAVRQAFILAGYHDVETCRDYGDNERVTL 271 (274)
T ss_dssp ---SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEE
T ss_pred ---hHHHHHHHHHHHCCCCeEEEEECCCCCceEEE
Confidence 01356778999999998876643 34444443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=2.5e-12 Score=107.75 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=81.1
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCCCC-CC
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQSVP-KG 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~~ 249 (353)
..+++.+. +.++.+|||||||+|..+..+++.+ |+.+++++|. +.+++.+++ ..++.++.+|..+..+ .+
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 45666676 8889999999999999999999976 6789999998 778877765 2678899999877333 33
Q ss_pred --cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 --DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 --D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+|++...+++.++ ++.+.|||||+|++..
T Consensus 144 ~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence 99999999998764 3567899999998843
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.26 E-value=1e-11 Score=102.96 Aligned_cols=95 Identities=22% Similarity=0.342 Sum_probs=74.7
Q ss_pred CeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC---CCCCC--cEEEeccccc
Q 018576 192 KQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ---SVPKG--DAIFLKWILH 259 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p~~--D~i~~~~~Lh 259 (353)
-.|||||||+|.++..+++.+|+..++|+|+ +.++..+.+ ..++.++.+|+.. .+|.. |.|++.+.-.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 4799999999999999999999999999998 666665533 3789999999876 24544 8887666543
Q ss_pred cCCchH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018576 260 DWDDEH-------CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 260 ~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+... ...+|+.+.++|+|||.|.+..
T Consensus 113 -w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 113 -WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp -CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 33221 1488999999999999998864
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=6.5e-12 Score=114.12 Aligned_cols=112 Identities=13% Similarity=0.250 Sum_probs=86.0
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------------CCeeE-EeC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------------PHIEH-VAG 240 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~rv~~-~~~ 240 (353)
+..+++.+. +.++.+|||||||+|..+..++..+|..+++|+|+ +.+++.|++. ..+.+ ..+
T Consensus 205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 446677777 88889999999999999999999999889999999 7777776542 22343 456
Q ss_pred CCCC-C-----CCCCcEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCC
Q 018576 241 DMFQ-S-----VPKGDAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEV 293 (353)
Q Consensus 241 d~~~-~-----~p~~D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~ 293 (353)
++.. + ++.+|+|++.+.+| +++..+.|+++++.|||||++++.+...+..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKVGCKIISLKSLRSLT 339 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred chhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence 6654 2 22348888876554 3567899999999999999999988766543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=1.6e-11 Score=103.28 Aligned_cols=141 Identities=15% Similarity=0.056 Sum_probs=97.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhC----CCCCCeeEEeCCCCCC--CC--CC--cEEEec
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHA----PLHPHIEHVAGDMFQS--VP--KG--DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~~--~p--~~--D~i~~~ 255 (353)
+.++.+|||+|||+|.++..+++.. |+-+++++|. +.+++.+ ++...+..+..|...+ ++ .. |+|++.
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence 6788999999999999999999976 8889999998 6676654 3456788888887652 22 12 666543
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCc
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFS 335 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 335 (353)
+++. ++...+++++++.|||||+++|.......+.. ........+...++ +.||+
T Consensus 151 --~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~--------------------~~~~~v~~~v~~l~-~~gf~ 205 (227)
T d1g8aa_ 151 --VAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT--------------------KEPEQVFREVEREL-SEYFE 205 (227)
T ss_dssp --CCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT--------------------SCHHHHHHHHHHHH-HTTSE
T ss_pred --cccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCC--------------------CCHHHHHHHHHHHH-HcCCE
Confidence 3332 34568999999999999999987654322111 01011122344444 57999
Q ss_pred eeeEeeeCC---ceEEEEEeC
Q 018576 336 GIRSDLVTG---NFWVMEFYK 353 (353)
Q Consensus 336 ~v~~~~~~~---~~~vi~~~~ 353 (353)
.++...+.+ .+.++.++|
T Consensus 206 iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred EEEEEcCCCCCCceEEEEEEe
Confidence 998877654 477777765
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.6e-11 Score=102.04 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=78.7
Q ss_pred HHHHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCCC-----------CCeeEEeCCCCC
Q 018576 179 SNILESYK-GFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPLH-----------PHIEHVAGDMFQ 244 (353)
Q Consensus 179 ~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~~d~~~ 244 (353)
..+++.+. ..+++.+|||||||+|..+..+++.. |..+++++|. +++++.++++ .++.++.+|...
T Consensus 64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~ 143 (224)
T d1i1na_ 64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 143 (224)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence 34555552 15678899999999999999998864 7889999998 7777776542 578999999887
Q ss_pred CCC-CC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 245 SVP-KG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 245 ~~p-~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
..+ .+ |+|++..++++.++ .+.+.|||||+|++.-
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 333 33 99999999988653 3567899999999843
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.04 E-value=2.4e-10 Score=93.82 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCchHHH----HHHHHHC----CCCeEEEecc-hHHHhhCCCC---------------------------
Q 018576 189 ANIKQLVDVGGNLGVTL----QAITSKY----PYIKGINFDQ-PHVIEHAPLH--------------------------- 232 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~----~~l~~~~----p~~~~~~~D~-~~~~~~a~~~--------------------------- 232 (353)
.++.+|+++|||+|.-. +.+.+.. ..+++++.|+ +.+++.|++.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 45689999999999843 3344332 2457899998 6677766421
Q ss_pred ----------CCeeEEeCCCCCC--CCC-C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 233 ----------PHIEHVAGDMFQS--VPK-G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 233 ----------~rv~~~~~d~~~~--~p~-~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
..+++...+...+ .+. . |+|+|.++|++++++...+++++++++|+|||+|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 2356666766652 222 3 9999999999999988899999999999999998874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.1e-10 Score=103.28 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC-----------------CCCeeEE
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL-----------------HPHIEHV 238 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------------~~rv~~~ 238 (353)
...++..++ ..++.+|||+|||+|.++..|++.. |+.+++.+|. +++++.|++ .+++.+.
T Consensus 87 ~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 87 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 445666676 8889999999999999999999975 8899999998 777766543 1579999
Q ss_pred eCCCCCC---CCCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 239 AGDMFQS---VPKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 239 ~~d~~~~---~p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.+|+.+. ++.. |.|++ +++++ ..+|.+++++|||||+|++.-++.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccCCCEEEEEeCCH
Confidence 9998762 3333 88876 34443 257999999999999999876543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=2.1e-10 Score=102.31 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCC-CCCCC--cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQ-SVPKG--DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh 259 (353)
++.+|||||||+|.++..+++.. ..+++++|.++++..+++ .+++.++.+|+.+ ++|.. |+|++....+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 46899999999999998777754 458999999666555443 2679999999988 67654 9999877766
Q ss_pred cCCc-hHHHHHHHHHHHhCCCCCEEEE
Q 018576 260 DWDD-EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 260 ~~~~-~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+.. .....++..+.+.|||||.++-
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccchhHHHHHHHHHhccCCCeEEEe
Confidence 5543 3466889999999999998863
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=1.4e-10 Score=103.04 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC-------CCCeeEEeCCCCC-CCCCC--cEEEeccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL-------HPHIEHVAGDMFQ-SVPKG--DAIFLKWILH 259 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~--D~i~~~~~Lh 259 (353)
++.+|||||||+|.++..+++..+ .+++++|.+++...+++ .++|.++.+|+.+ +.+.. |+|++....|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 468999999999999998888643 48999998544333222 3779999999988 66643 9999887777
Q ss_pred cCCc-hHHHHHHHHHHHhCCCCCEEEE
Q 018576 260 DWDD-EHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 260 ~~~~-~~~~~~L~~~~~~L~pgG~l~i 285 (353)
.+.. .....++..+.+.|+|||+++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6543 3467899999999999999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.98 E-value=3.3e-10 Score=94.78 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=76.0
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCCCCCC-C--cE
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQSVPK-G--DA 251 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p~-~--D~ 251 (353)
.++..+. +.++.+|||||||+|.++..+++.. .+++.+|. +..++.+++ ..++.++.+|....+++ + |+
T Consensus 61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 4566676 8888999999999999999888874 57899997 666665543 47899999998775543 4 99
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
|++...+++.++ .+.+.|+|||+|++.
T Consensus 138 Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 999999887653 245689999999884
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.4e-09 Score=96.21 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=74.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCC-------CCCCeeEEeCCCCC-CCCC-C-cEEEeccc
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAP-------LHPHIEHVAGDMFQ-SVPK-G-DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~rv~~~~~d~~~-~~p~-~-D~i~~~~~ 257 (353)
..++.+|||||||+|.+++.+++..+ .+++++|.++....++ ..+++.++.+|+.+ +.+. . |+|++...
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44578999999999999999888754 5899999844332221 13789999999988 6664 3 99999877
Q ss_pred cccCCch-HHHHHHHHHHHhCCCCCEEEE
Q 018576 258 LHDWDDE-HCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 258 Lh~~~~~-~~~~~L~~~~~~L~pgG~l~i 285 (353)
.|....+ ....++....+.|+|||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7765543 456778888899999999874
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=1.3e-09 Score=88.91 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=86.1
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCC-C-----
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQ-S----- 245 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~----- 245 (353)
..++++.+. ..++..+||++||+|.++..+++.+|+.+++++|. +++++.+++ .+++.++.++|.+ .
T Consensus 12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 456777776 67788999999999999999999999999999999 888887765 2689999999865 1
Q ss_pred CCC-C-cEEEecccccc----C---CchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 246 VPK-G-DAIFLKWILHD----W---DDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 246 ~p~-~-D~i~~~~~Lh~----~---~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
++. . |.|++-.-+.. . .-....+.|..+.++|+|||+++++....
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 222 2 77766533310 0 01234588999999999999999988654
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.84 E-value=1.5e-09 Score=90.07 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=77.6
Q ss_pred HHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCCCC-CC-
Q 018576 179 SNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQSVP-KG- 249 (353)
Q Consensus 179 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~~- 249 (353)
..++..+. ..++.+|||||||+|..+..+++.. +.+++.+|. +++++.+++ .+++.++.+|.....+ .+
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 45566666 8888999999999999999888765 356888887 667776654 2789999999987544 33
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|.|++...+...++. +.+.|+|||+|++.-
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCCEEEEEE
Confidence 999999999876642 455799999998743
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.82 E-value=3e-09 Score=88.92 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=76.6
Q ss_pred HHHHHhcc-ccCCCCeEEEEcCCchHHHHHHHHHC------CCCeEEEecc-hHHHhhCCCC-----------CCeeEEe
Q 018576 179 SNILESYK-GFANIKQLVDVGGNLGVTLQAITSKY------PYIKGINFDQ-PHVIEHAPLH-----------PHIEHVA 239 (353)
Q Consensus 179 ~~~~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~------p~~~~~~~D~-~~~~~~a~~~-----------~rv~~~~ 239 (353)
..++..+. .+.++.+|||||||+|..+..+++.. +..+++.+|. ++.++.++++ .++.++.
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 34555552 26678999999999999988877653 4568999998 6777766542 5799999
Q ss_pred CCCCCCCC-CC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 240 GDMFQSVP-KG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 240 ~d~~~~~p-~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+|..+..+ .+ |.|++...++..++ .+.+.|+|||+|++.-
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPV 190 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred cccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEEE
Confidence 99987443 33 99999999987663 2467999999998743
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.74 E-value=2.2e-08 Score=85.59 Aligned_cols=119 Identities=10% Similarity=0.099 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCCCC--cEEEecccc
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVPKG--DAIFLKWIL 258 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~--D~i~~~~~L 258 (353)
.++.+|||+|||+|.+++.+++. +..+++++|+ |..++.+++ .++|+++++|..+..++. |.|++...-
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~ 184 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 184 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence 46789999999999999999986 4579999999 777766654 267999999998744443 988876332
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCCCCCCccccccccccchhhhhhCCCCcccCHHHHHHHHHhcCCcee
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGI 337 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~v 337 (353)
. ...+|..+.+.|+|||.|.+.+...... ......+.+.++....||++.
T Consensus 185 ~------~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 185 R------THEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp S------GGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred c------hHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence 1 2467888889999999998766543221 011235667788889999763
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=4.1e-07 Score=77.05 Aligned_cols=72 Identities=8% Similarity=-0.018 Sum_probs=56.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC----C---CCC--cE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS----V---PKG--DA 251 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~----~---p~~--D~ 251 (353)
+...++||||||+|..+..++.++|+++++++|. +.+++.|++. +++.++..+.... + .+. |+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3457999999999999999999999999999999 7788777652 6788877554331 1 222 99
Q ss_pred EEecccccc
Q 018576 252 IFLKWILHD 260 (353)
Q Consensus 252 i~~~~~Lh~ 260 (353)
|+++--.+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999988775
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.53 E-value=2.9e-08 Score=77.85 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=67.8
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCC--CCCC--cEEEeccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQS--VPKG--DAIFLKWI 257 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~--~p~~--D~i~~~~~ 257 (353)
.+.+|||+|||+|.++.+.+.+.. .+++.+|. +.+++.+++ .++++++++|..+. .+.. |+|++.-.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 578999999999999999888755 49999998 666665443 26799999998762 3333 99988643
Q ss_pred cccCCchHHHHHHHHHHH--hCCCCCEEEEE
Q 018576 258 LHDWDDEHCLKLLKNCYK--SVPEDGKVIVV 286 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~--~L~pgG~l~i~ 286 (353)
.. .......|..+.. .|+|||.+++-
T Consensus 93 y~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 YA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp SH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 22 3445567776654 58998887753
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.36 E-value=1e-07 Score=78.91 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCCC-------CC--c
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSVP-------KG--D 250 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-------~~--D 250 (353)
.++.+|||||||+|..+..+++..+ +.+++.+|. ++..+.+++ .++|+++.+|..+-+| .+ |
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 4578999999999999999999885 589999998 667776654 2679999999865222 12 8
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+|++- |+.........+.+..+.|+|||.+++=+
T Consensus 135 ~ifiD---~~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 135 MVFLD---HWKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEEC---SCGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeeec---ccccccccHHHHHHHhCccCCCcEEEEeC
Confidence 88775 22212222345777788899999765533
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.34 E-value=9.6e-08 Score=83.60 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=75.9
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-----------CCCeeEEeCCCCCC---CCCC-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-----------HPHIEHVAGDMFQS---VPKG-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~---~p~~-D~ 251 (353)
.+++.+||.||+|.|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|...- .++. |+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 35678999999999999999998878889999999 778876653 37899999999872 2334 99
Q ss_pred EEeccc--cccCCc---hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 252 IFLKWI--LHDWDD---EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 252 i~~~~~--Lh~~~~---~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|++-.. ...-.. -....+++.+++.|+|||.+++.-.
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 985432 111000 0125789999999999999887543
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.32 E-value=4.6e-07 Score=77.36 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=53.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCCCCC--C--cEEEec
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQSVPK--G--DAIFLK 255 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~~p~--~--D~i~~~ 255 (353)
.+..+++|+|||+|..+..+++ +|+.+++++|. +..++.|+++ .++.+..+|++++.+. + |+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 3456899999999999999874 79999999999 7777766542 5788899999885542 2 999987
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.1e-07 Score=77.11 Aligned_cols=98 Identities=15% Similarity=0.257 Sum_probs=75.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCC--------CCC-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSV--------PKG- 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~--------p~~- 249 (353)
..++.+|||||||+|..+..+++..| +.+++.+|. ++..+.|++ .++++++.+|..+.. +..
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 44589999999999999999999986 689999998 666655543 378999999986521 122
Q ss_pred cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++-. +.......+..+.+.|+|||.+++-+...
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 8888752 23445788999999999999998866544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.31 E-value=1.1e-07 Score=83.94 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC---CC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP---KG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p---~~-D~i~ 253 (353)
.++.+|||++||+|.++..++... ..+++++|. +.+++.++++ ++++++.+|+++. ++ .. |+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 457899999999999999998874 348999999 7777776542 5789999998762 21 22 9999
Q ss_pred eccccccCCch-------HHHHHHHHHHHhCCCCCEEEEEee
Q 018576 254 LKWILHDWDDE-------HCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 254 ~~~~Lh~~~~~-------~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+.-.-..-... ...++++.+.+.|+|||.|+....
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 85432211111 134588888999999999998764
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=3.4e-07 Score=74.33 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=52.6
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-CCeeEEeCCCCCCCCCC-cEEEecccc
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-PHIEHVAGDMFQSVPKG-DAIFLKWIL 258 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~rv~~~~~d~~~~~p~~-D~i~~~~~L 258 (353)
+.+|||+|||+|.++..++...+ .+++++|. +.+++.++++ .+++++.+|+.+ ++.. |+|+++--+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeCccc
Confidence 68999999999999888777543 48999999 7778877764 679999999865 4444 999987544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.23 E-value=1.8e-07 Score=82.38 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC------CCeeEEeCCCCCC---CC---CC-cEEEec
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH------PHIEHVAGDMFQS---VP---KG-DAIFLK 255 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~rv~~~~~d~~~~---~p---~~-D~i~~~ 255 (353)
.+.+|||++||+|.++..+++. ..+++++|. +.+++.++++ ++++++++|.++. .+ +. |+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4789999999999999998864 458999999 6777776642 6799999998762 21 22 999986
Q ss_pred cccccCCc-------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHDWDD-------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~-------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
---...+. ....++++.+.+.|+|||.|+....
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 43221111 1124688899999999999987654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.20 E-value=9.9e-07 Score=74.22 Aligned_cols=91 Identities=10% Similarity=0.204 Sum_probs=69.6
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC----CCeeEEeCCCCC-CCCCC-
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH----PHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~rv~~~~~d~~~-~~p~~- 249 (353)
....+++.+. ..+..+|||||||+|.++..|++.. .+++++|. +.+++.+++. ++++++++|+.+ +++..
T Consensus 17 ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 3456777776 7778999999999999999999984 48999998 5666666543 689999999998 77755
Q ss_pred cEEEeccccccCCchHHHHHH
Q 018576 250 DAIFLKWILHDWDDEHCLKLL 270 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~~~~~~L 270 (353)
+..+..+.=++++.+-..+++
T Consensus 94 ~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 94 RYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHH
T ss_pred eeeEeeeeehhhhHHHHHHHh
Confidence 566667777778765444444
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.18 E-value=6.4e-07 Score=76.93 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=72.7
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------------CCCeeEEeCCCCCCC--CC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------------HPHIEHVAGDMFQSV--PK 248 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~~d~~~~~--p~ 248 (353)
.+++.+||.||+|.|..+.++++ +|..+++++|+ |.+++.+++ .+|++++.+|...-+ .+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 45678999999999999999986 56678999999 788876642 378999999987622 23
Q ss_pred C-cEEEeccccccCCchH---HHHHHHHHHHhCCCCCEEEEEe
Q 018576 249 G-DAIFLKWILHDWDDEH---CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 249 ~-D~i~~~~~Lh~~~~~~---~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. |+|++-.. ...+... -..+++.+++.|+|||.+++.-
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 3 99986433 2222111 1478999999999999988754
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.15 E-value=5.1e-07 Score=77.97 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=74.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i 252 (353)
.+++.+||-||+|.|..+.++++..|..+++++|+ +.+++.+++ .+|++++.+|..+- .++. |+|
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 35678999999999999999998777788999999 778877654 37999999998772 2233 999
Q ss_pred EeccccccCCch---HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 253 FLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 253 ~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
++-..=..-... --..+++.+++.|+|||.+++.-
T Consensus 167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 865332110010 02589999999999999998764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.14 E-value=1.2e-06 Score=75.92 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=72.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--------CCeeEEeCCCCCCCC------CC-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--------PHIEHVAGDMFQSVP------KG-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~rv~~~~~d~~~~~p------~~-D~ 251 (353)
...+.+|||+.||||.++..++.. +.+++.+|. +.+++.|+++ .+++++++|+++.+. .. |+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999998875 468999998 6677776642 469999999986321 22 99
Q ss_pred EEec---cccc----cCC-chHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 252 IFLK---WILH----DWD-DEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 252 i~~~---~~Lh----~~~-~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
|++- +.-. .|. ......+++.+.+.|+|||.+++....
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 9973 1111 011 233456778889999999987776653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.10 E-value=8e-07 Score=76.11 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=74.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC--CC-CCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ--SV-PKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~~-p~~-D~i 252 (353)
.+++.+||-||+|.|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|... .. ++. |+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 35678999999999999999998777789999998 777776643 3799999999876 22 233 999
Q ss_pred EeccccccCCch---HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 253 FLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 253 ~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+.-..=. .... --..+++.+++.|+|||.++..-
T Consensus 153 i~D~~~p-~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEP-VGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EESCSSC-CSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCC-CCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 8653321 1110 12488999999999999988753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.09 E-value=3.9e-06 Score=70.07 Aligned_cols=85 Identities=11% Similarity=0.185 Sum_probs=63.7
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC----CCCCCeeEEeCCCCC-CCCCC-
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA----PLHPHIEHVAGDMFQ-SVPKG- 249 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~-~~p~~- 249 (353)
....+++... ..+..+|||||||+|.++..|++.. .++++++. +.+++.. ...++++++.+|+.+ +++..
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 3456777666 7788999999999999999999984 47888887 5555443 345889999999998 67765
Q ss_pred cEEEeccccccCCch
Q 018576 250 DAIFLKWILHDWDDE 264 (353)
Q Consensus 250 D~i~~~~~Lh~~~~~ 264 (353)
...+..+.=++.+.+
T Consensus 86 ~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 86 SYKIFGNIPYNISTD 100 (235)
T ss_dssp CCEEEEECCGGGHHH
T ss_pred cceeeeeehhhhhHH
Confidence 555566666666543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.09 E-value=3.7e-06 Score=68.61 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-----CCeeEEeCCCCCCCCCC-cEEEeccccccCC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-----PHIEHVAGDMFQSVPKG-DAIFLKWILHDWD 262 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~rv~~~~~d~~~~~p~~-D~i~~~~~Lh~~~ 262 (353)
.+.+|||+|||+|.+++.++.. +..+++++|. +.+++.++++ .++++..+|... ++.. |+|++.--.....
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~-~~~~fD~Vi~nPP~~~~~ 123 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQR 123 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSSS
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhh-hCCcCcEEEEcCcccccc
Confidence 4679999999999999988765 3458999999 6677666542 568888888765 3333 9999886654332
Q ss_pred chHHHHHHHHHHH
Q 018576 263 DEHCLKLLKNCYK 275 (353)
Q Consensus 263 ~~~~~~~L~~~~~ 275 (353)
......++.....
T Consensus 124 ~~~d~~~l~~~~~ 136 (201)
T d1wy7a1 124 KHADRPFLLKAFE 136 (201)
T ss_dssp TTTTHHHHHHHHH
T ss_pred ccccHHHHHHHHh
Confidence 2222344554333
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.1e-06 Score=75.70 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=74.5
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC---CCCCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ---SVPKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~~-D~i 252 (353)
.+.+.+||-||+|.|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|... ..++. |+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 45678999999999999999998777789999998 788887764 3799999999876 22334 999
Q ss_pred EeccccccCCchH---HHHHHHHHHHhCCCCCEEEEEe
Q 018576 253 FLKWILHDWDDEH---CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 253 ~~~~~Lh~~~~~~---~~~~L~~~~~~L~pgG~l~i~e 287 (353)
++-. .+...... -..+++.+++.|+|||.+++.-
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 8753 22221111 2377999999999999998764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.08 E-value=1.2e-06 Score=72.72 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=76.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCC---------CCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSV---------PKG 249 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---------p~~ 249 (353)
..++.+||+||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+-+ ...
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 34589999999999999999999987 589999998 666665554 268999999986522 123
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
|+|++-. + .......+..+.+.|+|||.+++-+...
T Consensus 137 fD~iFiDa----~-k~~y~~~~e~~~~ll~~gGiii~DNvl~ 173 (227)
T d1susa1 137 YDFIFVDA----D-KDNYLNYHKRLIDLVKVGGVIGYDNTLW 173 (227)
T ss_dssp BSEEEECS----C-STTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred eeEEEecc----c-hhhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence 9998852 2 2446788999999999999998765543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.06 E-value=1.4e-06 Score=75.22 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=76.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCC---CCCCC--cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQ---SVPKG--DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p~~--D~ 251 (353)
.+++.+||=||+|.|..+.++++..|-.+++++|+ +.+++.+++ .+|++++.+|..+ ..+++ |+
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 35678999999999999999999777678999999 778877755 3899999999876 23443 99
Q ss_pred EEeccccccCCchH---HHHHHHHHHHhCCCCCEEEEEe
Q 018576 252 IFLKWILHDWDDEH---CLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 252 i~~~~~Lh~~~~~~---~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|+.-.. ....... -..+++.+++.|+|||.+++.-
T Consensus 158 Ii~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 158 VIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 986433 1111111 2578999999999999999864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.03 E-value=1.3e-06 Score=75.68 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----------CCCeeEEeCCCCCC---CCCC-cEE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----------HPHIEHVAGDMFQS---VPKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p~~-D~i 252 (353)
.+++.+||-||+|.|..+.++++..|-.+++++|+ +.+++.+++ .+|++++.+|..+- .++. |+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 35678999999999999999998766678999999 778776654 27899999998762 2233 999
Q ss_pred EeccccccCCch---HHHHHHHHHHHhCCCCCEEEEEe
Q 018576 253 FLKWILHDWDDE---HCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 253 ~~~~~Lh~~~~~---~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+.-..- ..... ....+++.+++.|+|||.++..-
T Consensus 184 I~D~~d-p~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 184 ITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCC-CCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 875332 11111 13578999999999999999864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=2.4e-06 Score=68.65 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCC--CC-CC-cEEEecccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQS--VP-KG-DAIFLKWIL 258 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~--~p-~~-D~i~~~~~L 258 (353)
...+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..++.++..|+++- .. .. |+|++---.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3579999999999999998887643 8999998 666665543 25788999998762 22 23 999997654
Q ss_pred ccCCchHHHHHHHHHHH--hCCCCCEEEEE
Q 018576 259 HDWDDEHCLKLLKNCYK--SVPEDGKVIVV 286 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~--~L~pgG~l~i~ 286 (353)
.. ....+++..+.+ .|+|+|.+++-
T Consensus 122 ~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 122 RR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 32 334566777665 48898877763
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.97 E-value=1.1e-06 Score=69.88 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=59.4
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEEeCCCCCC---CC-CC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHVAGDMFQS---VP-KG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~~~d~~~~---~p-~~-D~i~~ 254 (353)
...+.+|||+|||+|.++++.+.+ +.+++.+|. +.+++.+++. .++.....|.+.. .. +. |+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 356789999999999999998886 458999998 7777766542 3444444443321 11 23 99998
Q ss_pred ccccccCCchHHHHHHHHHH--HhCCCCCEEEEE
Q 018576 255 KWILHDWDDEHCLKLLKNCY--KSVPEDGKVIVV 286 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~--~~L~pgG~l~i~ 286 (353)
.--.+. .. .+.+..+. ..|+|||.+++.
T Consensus 117 DPPY~~-~~---~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 117 APPYAM-DL---AALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp CCCTTS-CT---THHHHHHHHHTCEEEEEEEEEE
T ss_pred cccccc-CH---HHHHHHHHHcCCcCCCeEEEEE
Confidence 644332 21 12333333 468999977653
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.89 E-value=2.5e-06 Score=74.62 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=70.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCCCC------CCC-cE
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQSV------PKG-DA 251 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~------p~~-D~ 251 (353)
..++.+|||+.||+|.+++..+.. ...+++.+|. +..++.+++ ..+++++.+|.++.+ .+. |+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 345789999999999999887764 3457999998 556665543 257999999997622 122 99
Q ss_pred EEeccc--------cccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 252 IFLKWI--------LHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 252 i~~~~~--------Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|++--- ++.. .....++++.+.+.|+|||.|++...
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 997421 1111 12245799999999999999998554
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=1.1e-05 Score=65.80 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH---HHhhCC---CCCCeeEEeCCCCCCCCC-C-cEEEecccccc
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH---VIEHAP---LHPHIEHVAGDMFQSVPK-G-DAIFLKWILHD 260 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~---~~~rv~~~~~d~~~~~p~-~-D~i~~~~~Lh~ 260 (353)
+..+|+|||+|.|.-+.-++-.+|+.+++++|. .. .++.+. ...+++.++....+..+. . |+|+++.+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 356999999999999999999999999999997 21 222211 136799999888773333 3 999887652
Q ss_pred CCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 261 WDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 261 ~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+ ...++.-+...++++|++++.-
T Consensus 143 --~--~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 143 --S--LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --S--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred --C--HHHHHHHHHHhcCCCcEEEEEC
Confidence 2 4588999999999999998865
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.86 E-value=2.9e-05 Score=63.89 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=71.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-CeEEEecch-HHHhhCCCCCCeeEEeCCCCCC-CCCC-cEEEec
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-IKGINFDQP-HVIEHAPLHPHIEHVAGDMFQS-VPKG-DAIFLK 255 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~~~rv~~~~~d~~~~-~p~~-D~i~~~ 255 (353)
.+++.+. ...+.+|||.|||+|.++..+.+..+. .+++++|.. ..+..+ .+.....+|++.. .... |+++.+
T Consensus 10 ~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~n 85 (223)
T d2ih2a1 10 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGN 85 (223)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceeccc
Confidence 3445444 566789999999999999999887765 578999983 333222 3457777887763 2233 888877
Q ss_pred cccccCC--c-------------------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 256 WILHDWD--D-------------------------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~--~-------------------------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
....... . .-...++.++.+.|+|||++.++-+
T Consensus 86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 5532210 0 0123667889999999999988764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.85 E-value=1.2e-05 Score=70.71 Aligned_cols=101 Identities=9% Similarity=0.106 Sum_probs=72.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-----CCCeEEEecc-hHHHhhCCC-----CCCeeEEeCCCCCCCCC-C-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-----PYIKGINFDQ-PHVIEHAPL-----HPHIEHVAGDMFQSVPK-G-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~-~-D~i~~ 254 (353)
.....+|||.+||+|.++..+.+.. ++.+++|+|+ +.++..|+. .....+..+|.....+. . |+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 4556899999999999999887643 4557899998 666665543 25677888887764443 3 99999
Q ss_pred ccccccCCchH----------------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 255 KWILHDWDDEH----------------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 255 ~~~Lh~~~~~~----------------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+--+......+ -..++..+.+.|+|||+++++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 86543221111 12479999999999999888665
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=4.4e-05 Score=60.71 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=79.0
Q ss_pred hhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecchHHHhhCCCCCCeeEEeCCCCC-CC-----
Q 018576 174 TSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQPHVIEHAPLHPHIEHVAGDMFQ-SV----- 246 (353)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~----- 246 (353)
+...+.++.+.+.-+.+..+||||||+.|.++..+.+.. +..+++++|+..+ ...+++.++.+|+.+ ..
T Consensus 6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~ 81 (180)
T d1ej0a_ 6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhh
Confidence 334456777777745778899999999999999998865 4578999998432 345788999999876 21
Q ss_pred ---CCC--cEEEeccccccCCchH---------HHHHHHHHHHhCCCCCEEEEEee
Q 018576 247 ---PKG--DAIFLKWILHDWDDEH---------CLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 247 ---p~~--D~i~~~~~Lh~~~~~~---------~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
... |+|++-.....-.... +...|.-+.+.|+|||.+++--.
T Consensus 82 ~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 112 9988876643322111 33667778889999999998554
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.77 E-value=5.9e-06 Score=66.23 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=68.3
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC-------CCCeeEEeCCCCCCC-----C-CC-cEEE
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL-------HPHIEHVAGDMFQSV-----P-KG-DAIF 253 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-----p-~~-D~i~ 253 (353)
-++.+|||+.||+|.++.+.+.+.. .+++.+|. +.+++.+++ ..+++++.+|+++.+ . .. |+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 3578999999999999999998753 37999998 566665543 257999999987621 1 12 9999
Q ss_pred eccccccCCchHHHHHHHHHHH--hCCCCCEEEEEee
Q 018576 254 LKWILHDWDDEHCLKLLKNCYK--SVPEDGKVIVVEL 288 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~ 288 (353)
+---.+ ......+|..+.. .|+|+|.++ +|.
T Consensus 119 lDPPY~---~~~~~~~l~~i~~~~~L~~~giIi-~E~ 151 (182)
T d2fhpa1 119 LDPPYA---KQEIVSQLEKMLERQLLTNEAVIV-CET 151 (182)
T ss_dssp ECCCGG---GCCHHHHHHHHHHTTCEEEEEEEE-EEE
T ss_pred echhhh---hhHHHHHHHHHHHCCCCCCCEEEE-EEc
Confidence 875533 2335677887765 589988765 554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.74 E-value=0.00014 Score=59.97 Aligned_cols=109 Identities=10% Similarity=-0.018 Sum_probs=69.0
Q ss_pred hhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHH---hhCCC---CCCeeEEeCCCCCCCC-C
Q 018576 176 LIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVI---EHAPL---HPHIEHVAGDMFQSVP-K 248 (353)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~---~~a~~---~~rv~~~~~d~~~~~p-~ 248 (353)
..+.++.+.+- +.+..+|+|+|||.|.++..++.+.+...+.++++-.-. ....+ .+-+.+...+.....+ .
T Consensus 53 ~Kl~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~ 131 (257)
T d2p41a1 53 AKLRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPE 131 (257)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCC
Confidence 34556666665 677789999999999999999988766677666651101 11111 1235666554433333 3
Q ss_pred -CcEEEeccccccCCch-----HHHHHHHHHHHhCCCCCEEEEE
Q 018576 249 -GDAIFLKWILHDWDDE-----HCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 249 -~D~i~~~~~Lh~~~~~-----~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
.|+|+|--.-+. ++. ...++|.-+.+.|+|||.+++-
T Consensus 132 ~~D~vlcDm~ess-~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 132 RCDTLLCDIGESS-PNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp CCSEEEECCCCCC-SSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cCCEEEeeCCCCC-CCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 399988754321 111 2337778888999999987763
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=1.5e-05 Score=53.66 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=47.6
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSV 101 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~ 101 (353)
+.|++.+..++ .|.|+.|||+.+|+ ++.-+.|+|..|+..|++.+. .+++|.+++.
T Consensus 8 l~IL~~~a~~~--~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~-----~~g~y~lG~~ 63 (75)
T d1mkma1 8 FEILDFIVKNP--GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK-----KDKRYVPGYK 63 (75)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----TTSCEEECTH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC-----CCCCEeecHH
Confidence 45778888754 58999999999999 999999999999999999986 2567987743
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=5.2e-05 Score=60.32 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=78.6
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC--CCCeeEEeCCCCC-C-----CC-
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL--HPHIEHVAGDMFQ-S-----VP- 247 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~-----~p- 247 (353)
..++++.+. ..++..++|..+|.|+++..+++. +.+++++|. |+++..+++ .+++.++.+++.+ . ..
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence 456777676 677889999999999999999997 468999999 777776654 4789999988765 1 11
Q ss_pred CC-cEEEecc-----ccccCCc--hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 248 KG-DAIFLKW-----ILHDWDD--EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 248 ~~-D~i~~~~-----~Lh~~~~--~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+. |.|++-. -|.+-.. ......|......|+|||+++++..
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 12 6666532 2221110 1234578899999999999998875
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.65 E-value=0.00012 Score=60.50 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=67.2
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHH---H-CCCCeEEEecc-hHHHhhC-CCCCCeeEEeCCCCC-C-C---CC
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITS---K-YPYIKGINFDQ-PHVIEHA-PLHPHIEHVAGDMFQ-S-V---PK 248 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~---~-~p~~~~~~~D~-~~~~~~a-~~~~rv~~~~~d~~~-~-~---p~ 248 (353)
.++..+. +.+||+||++.|..+..++. . .++.+++++|+ +...... ...++++++.+|..+ . + .+
T Consensus 74 eli~~~K----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~ 149 (232)
T d2bm8a1 74 DMLWELR----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLRE 149 (232)
T ss_dssp HHHHHHC----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSS
T ss_pred HHHHHhC----CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHh
Confidence 4555444 78999999999987765543 2 36789999998 3332222 224789999999765 2 1 12
Q ss_pred -C-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 249 -G-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 249 -~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
. |+|++-.. |.. .....-+ +....|+|||+++|-|..
T Consensus 150 ~~~dlIfID~~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 150 MAHPLIFIDNA-HAN--TFNIMKW-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SCSSEEEEESS-CSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred cCCCEEEEcCC-cch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence 2 87776544 652 2223334 466899999999987753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.57 E-value=0.00071 Score=59.21 Aligned_cols=149 Identities=17% Similarity=0.137 Sum_probs=92.1
Q ss_pred CCCCeEEEEcCCchHHHH-------HHHH-H--------CCCCeEEEecchH-----HHhhCCC---CC-C--eeEEeCC
Q 018576 189 ANIKQLVDVGGNLGVTLQ-------AITS-K--------YPYIKGINFDQPH-----VIEHAPL---HP-H--IEHVAGD 241 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~-------~l~~-~--------~p~~~~~~~D~~~-----~~~~a~~---~~-r--v~~~~~d 241 (353)
++..+|.|+||.+|..+. ...+ . -|..++..-|+|. .-..... .. . +.-++|.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 345789999999998773 2222 1 3567788888752 1122111 11 1 4557789
Q ss_pred CCC-CCCCC--cEEEeccccccCCc-------------------------------hHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 242 MFQ-SVPKG--DAIFLKWILHDWDD-------------------------------EHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 242 ~~~-~~p~~--D~i~~~~~Lh~~~~-------------------------------~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
|.. -+|.+ +++++++.||.++. .+...+|+.=.+=|.|||+++++-
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 998 78876 99999999998752 123457887788899999999998
Q ss_pred eecCCCCCCccccccccccch----hh-hhh---CC---------CCcccCHHHHHHHHHhcC-CceeeE
Q 018576 288 LMLPEVPNTSIESKSNSHIDV----LM-MTQ---NP---------GGKERTKHEFMTLATGAG-FSGIRS 339 (353)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~----~~-~~~---~~---------~g~~~t~~~~~~ll~~aG-f~~v~~ 339 (353)
...++....... .....++ ++ |+. .. --..+|.+|++..+++.| |++.+.
T Consensus 210 ~gr~~~~~~~~~--~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 210 LGRRSEDRASTE--CCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTT--TSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred eccCCCCCCCCc--cchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 887653222100 0011111 10 110 00 012368999999998876 665544
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.40 E-value=4.2e-05 Score=63.43 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=69.3
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hH---HHhhCCC---CCCeeEEeCCCCC-----CCCCC-cEEEe
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PH---VIEHAPL---HPHIEHVAGDMFQ-----SVPKG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~---~~~~a~~---~~rv~~~~~d~~~-----~~p~~-D~i~~ 254 (353)
++...+++|||+|.|.-++-++-.+|+.+++.+|. .. .++.+.+ ..++.++...+.. +..+. |+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34567999999999999999999999999999997 21 2222211 2677777766543 12233 99999
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
+.+- ....++.-+...+++||++++.-
T Consensus 148 RAva------~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 148 RAVA------RLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp ECCS------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhhh------CHHHHHHHHhhhcccCCEEEEEC
Confidence 8553 24688999999999999998754
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=97.18 E-value=0.0001 Score=52.25 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=52.6
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
++|.--.++.|+..|.. +|.|+.|||+.+|+ .+..+...|+.|...|+|+.. ++|. .-+|+++
T Consensus 18 kaL~~p~Rl~Il~~L~~----~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~-r~G~-~~~Y~l~ 80 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLAR----SELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR-KQGR-HVYYQLQ 80 (98)
T ss_dssp HHHCCHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEES
T ss_pred HHhCCHHHHHHHHHHHc----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE-EECC-EEEEEEC
Confidence 46666688889999977 58999999999999 999999999999999999987 4552 4556655
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.0018 Score=54.68 Aligned_cols=91 Identities=12% Similarity=0.191 Sum_probs=61.3
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCC----C---CCCeeEEeCCCCC-CCCC
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAP----L---HPHIEHVAGDMFQ-SVPK 248 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~---~~rv~~~~~d~~~-~~p~ 248 (353)
...+++... ......|||||+|+|.++..|++... ++++++. +..++..+ . ..+++++.+|+.+ ++|.
T Consensus 10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 456666665 66778999999999999999999864 6666666 33333332 2 2679999999998 6665
Q ss_pred CcEEEeccccccCCchHHHHHHHHHHHh
Q 018576 249 GDAIFLKWILHDWDDEHCLKLLKNCYKS 276 (353)
Q Consensus 249 ~D~i~~~~~Lh~~~~~~~~~~L~~~~~~ 276 (353)
.+.|+.+-- ++.+ ..++.++...
T Consensus 87 ~~~vV~NLP-Y~Is----s~il~~~~~~ 109 (278)
T d1zq9a1 87 FDTCVANLP-YQIS----SPFVFKLLLH 109 (278)
T ss_dssp CSEEEEECC-GGGH----HHHHHHHHHC
T ss_pred hhhhhcchH-HHHH----HHHHHHHHhh
Confidence 565554433 3332 3556655543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0002 Score=59.96 Aligned_cols=84 Identities=8% Similarity=0.142 Sum_probs=59.4
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC----CCCeeEEeCCCCC-CCCC--
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL----HPHIEHVAGDMFQ-SVPK-- 248 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~-- 248 (353)
....+++... ..+...|||||||+|.++..|++.. .++++++. +.+++..+. .+++.++.+|+.+ +.++
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 3456677666 6778899999999999999999875 46777777 555554433 3789999999987 4332
Q ss_pred ---C-cEEEeccccccCCc
Q 018576 249 ---G-DAIFLKWILHDWDD 263 (353)
Q Consensus 249 ---~-D~i~~~~~Lh~~~~ 263 (353)
+ -+.+..+.=++.+.
T Consensus 86 ~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHTSCEEEEEECCTTTHH
T ss_pred cccCCCeEEEecchHHHHH
Confidence 1 35566666655553
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=97.08 E-value=0.00013 Score=51.17 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=52.7
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
++|.--.++.|+..|.. ++.++.||++.+|+ .+..+.+.|+.|...|+|... +.|. .-+|+++
T Consensus 13 kaL~d~~Rl~Il~~L~~----~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~-r~G~-~~~Y~l~ 75 (94)
T d1r1ua_ 13 KALGDYNRIRIMELLSV----SEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK-RQGQ-SMIYSLD 75 (94)
T ss_dssp HHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEES
T ss_pred HHhCCHHHHHHHHHHHc----CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEE-EECC-EEEEEEC
Confidence 45566688889999988 59999999999999 999999999999999999987 4442 4557665
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=97.00 E-value=0.00024 Score=51.16 Aligned_cols=65 Identities=23% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 26 PMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 26 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.++|.--.++.|+..|... ++.|+.|||+.+|+ .+..+.+.|+.|...|+|... +.|. .-.|+++
T Consensus 25 ~kaLadp~Rl~Il~~L~~~---~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~-r~G~-~~~Y~l~ 89 (108)
T d1u2wa1 25 LKAIADENRAKITYALCQD---EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR-KEGK-LALYSLG 89 (108)
T ss_dssp HHHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC------CCEEEES
T ss_pred HHHhCCHHHHHHHHHHHhC---CCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEE-EECC-EEEEEEC
Confidence 4567777899999999754 48999999999999 999999999999999999987 5553 4567665
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.93 E-value=0.00018 Score=51.17 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=54.7
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccC-CCCccceeccccccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG-SGARRRYSLNSVSKY 104 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~~~~y~~t~~~~~ 104 (353)
++..-.++.|+..|... ++.|+.|||+.+++ .+..+.+.|+.|...|+|++.... +.-.-.|.+|+.|..
T Consensus 12 ~l~~p~r~~IL~~L~~~---~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~ 82 (100)
T d1ub9a_ 12 ILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred hcCCHHHHHHHHHhccC---CCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHH
Confidence 44455688899999765 48999999999999 999999999999999999976311 111234888877754
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.90 E-value=0.0026 Score=54.25 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------CCCeeEEeCCCCCCCC----------CC
Q 018576 189 ANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------HPHIEHVAGDMFQSVP----------KG 249 (353)
Q Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~p----------~~ 249 (353)
.+..+|+.+|||-=.....+ ...++++++-+|.|++++..++ ..+.+++..|+.++++ ..
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45578889999988776655 3356789999999988874332 2456778888765322 11
Q ss_pred -cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEE
Q 018576 250 -DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 250 -D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~ 286 (353)
-++++-.++++++.+++.++|+.+.+...||+.|++-
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 5777778999999999999999999999999998764
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.75 E-value=0.00068 Score=53.79 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=62.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC--------CCCeeEEeCCCCC--CC--CC-C-cEEEec
Q 018576 191 IKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL--------HPHIEHVAGDMFQ--SV--PK-G-DAIFLK 255 (353)
Q Consensus 191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~--~~--p~-~-D~i~~~ 255 (353)
..+|||+-||||.++.+.+.+-. .+++.+|. ...++..++ ...+.+...|..+ .. .. . |+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 57999999999999999998753 48999998 445443322 1346666666544 11 12 2 999887
Q ss_pred cccccCCchHHHHHHHHHHH--hCCCCCEEEEEee
Q 018576 256 WILHDWDDEHCLKLLKNCYK--SVPEDGKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~--~L~pgG~l~i~e~ 288 (353)
--... .....+|..+.. .|+++|.+++ |.
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liii-E~ 153 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYV-ET 153 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEE-EE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEE-Ee
Confidence 66432 335677777765 5888886665 44
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.0082 Score=51.82 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecchHHHhhCCC---------------------------CCCeeEEeCCC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQPHVIEHAPL---------------------------HPHIEHVAGDM 242 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~rv~~~~~d~ 242 (353)
+..+|+-+|||.=.....+...+|+++++-+|.|++++..++ .++.+++..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 457999999999988888888899999999999888764321 15788899998
Q ss_pred CC-CC---------CCC--cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 243 FQ-SV---------PKG--DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 243 ~~-~~---------p~~--D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
.+ .. ... -++++-.+|.+++.+++.++|+.+.+..+ ++.+++.|.+.+.
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~ 236 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGS 236 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCC
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCC
Confidence 76 21 111 58888899999999999999999998885 6788889998654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.70 E-value=0.0017 Score=58.51 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=73.5
Q ss_pred HHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCC-------------CeEEEecc-hHHHhhCC--------CCCCe
Q 018576 178 MSNILESYKGFANIKQLVDVGGNLGVTLQAITSKYPY-------------IKGINFDQ-PHVIEHAP--------LHPHI 235 (353)
Q Consensus 178 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-------------~~~~~~D~-~~~~~~a~--------~~~rv 235 (353)
+..+++.+. .....+|+|-.||+|.++..+.+.... ....++|. +.+...++ .....
T Consensus 151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 444455454 456789999999999999988775421 24678887 44444332 12456
Q ss_pred eEEeCCCCCCCCC-C-cEEEeccccccCCc---------------hHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 236 EHVAGDMFQSVPK-G-DAIFLKWILHDWDD---------------EHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 236 ~~~~~d~~~~~p~-~-D~i~~~~~Lh~~~~---------------~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.+..+|.+...+. . |+|+++--+..-.. ..-..++.++...|+|||++.++-+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 7788888874433 2 99998866532110 1123699999999999999888754
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0026 Score=55.87 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=62.0
Q ss_pred HHHHhccccCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCCCCC-----
Q 018576 180 NILESYKGFANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQSVP----- 247 (353)
Q Consensus 180 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p----- 247 (353)
.+.+.+. ..+..+|||+-||+|.++..|++.. .+++++|. +++++.|++ ..++.|+.+|..+.++
T Consensus 203 ~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 203 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence 3444444 5667899999999999999999864 58999998 667776654 2689999998876332
Q ss_pred -CC-cEEEeccccccCCchHHHHHHHHHHHhCCCCC
Q 018576 248 -KG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDG 281 (353)
Q Consensus 248 -~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG 281 (353)
.. |+|++--- ..-+.++++.+.+. +|.-
T Consensus 280 ~~~~d~vilDPP-----R~G~~~~~~~l~~~-~~~~ 309 (358)
T d1uwva2 280 KNGFDKVLLDPA-----RAGAAGVMQQIIKL-EPIR 309 (358)
T ss_dssp TTCCSEEEECCC-----TTCCHHHHHHHHHH-CCSE
T ss_pred hccCceEEeCCC-----CccHHHHHHHHHHc-CCCE
Confidence 12 87766422 22233455555543 4443
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.0013 Score=42.08 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=44.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.++.|+..|.++ +..|.+|||+.+|+ ....+.+-++.|...|+.-+. .. +..|+++
T Consensus 6 ~~~~iL~~L~~~---~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~-~~---g~GY~L~ 61 (63)
T d1biaa1 6 VPLKLIALLANG---EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT-VP---GKGYSLP 61 (63)
T ss_dssp HHHHHHHHHTTS---SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE-ET---TTEEECS
T ss_pred HHHHHHHHHHHC---CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEE-eC---CCeEEeC
Confidence 356688888775 58999999999999 999999999999999984333 11 3458765
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.31 E-value=0.0013 Score=52.53 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=52.4
Q ss_pred HHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccccc
Q 018576 28 AMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSVSK 103 (353)
Q Consensus 28 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~~~ 103 (353)
+|.--.+..|+..|.. +|+|+.|||+.+|+ .+..+++.|+.|...|+|+...+ .|.....|.++..+.
T Consensus 11 ~l~~~~R~~Il~~L~~----~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 11 VLGNETRRRILFLLTK----RPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHSHHHHHHHHHHHH----SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 3444466777888877 49999999999999 99999999999999999986531 232234688887654
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.23 E-value=0.00064 Score=46.51 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=44.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
+++|..+||+.+++ .+..+.++|+.|...|++.+. .+|. .-.|.+|+.|..++
T Consensus 20 ~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~-~D~R-~~~i~LT~~G~~~l 72 (85)
T d3ctaa1 20 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRT-VTKR-GQILNITEKGLDVL 72 (85)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-EETT-EEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee-cccc-cccceECHHHHHHH
Confidence 48999999999999 999999999999999999996 4542 45577887776443
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=96.15 E-value=0.0024 Score=41.83 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=41.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-+..|+..|... +|+|..|||+.+|+ .+.-+.+.++.|...|++.+.
T Consensus 7 N~~~Il~~l~~~---g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 7 NAGRVYKLIDQK---GPISRIDLSKESEL----APASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 345688888887 59999999999999 999999999999999999864
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.08 E-value=0.0024 Score=50.78 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc---CCCCccceecccc
Q 018576 25 LPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD---GSGARRRYSLNSV 101 (353)
Q Consensus 25 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~---~g~~~~~y~~t~~ 101 (353)
...+|..-.+..|++.|.. +|+|+.|||+.+|+ .+..+.+.|+.|...|+|+.... .|.....|.+|..
T Consensus 12 ~~~~l~~p~R~~Il~~L~~----~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~ 83 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN----KEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTAD 83 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSS
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEccc
Confidence 4567777789999999976 59999999999999 99999999999999999975421 1212345777765
Q ss_pred ccc
Q 018576 102 SKY 104 (353)
Q Consensus 102 ~~~ 104 (353)
+-.
T Consensus 84 ~~~ 86 (190)
T d1ulya_ 84 VFY 86 (190)
T ss_dssp EEE
T ss_pred cee
Confidence 433
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0041 Score=39.90 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=45.6
Q ss_pred HHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccc-eeeeccCCCCccceecc
Q 018576 30 QAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSV-VECSLDGSGARRRYSLN 99 (353)
Q Consensus 30 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~-l~~~~~~g~~~~~y~~t 99 (353)
+.--...|+..|..+. +++|+++||+.+++ ..+-++|-|+.|.+.|+ +... .+.|.+.
T Consensus 5 k~eR~~~Il~~L~~~~--~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~~------~gGY~L~ 63 (65)
T d1j5ya1 5 RQERLKSIVRILERSK--EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT------PRGYVLA 63 (65)
T ss_dssp HHHHHHHHHHHHHHCS--SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE------TTEEECC
T ss_pred HHHHHHHHHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEEe------CCCEEeC
Confidence 3344567788887642 47999999999999 99999999999999997 5543 3468765
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=96.00 E-value=0.0051 Score=39.27 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=43.0
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcccee
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYS 97 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~ 97 (353)
-.|.+.+..+|- .|-++.+||+.+|+ ++..++.+|+.|+..|.+.+. .++.|.
T Consensus 10 ~~I~~~~~~~g~-~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI-----~~d~yf 62 (64)
T d1lvaa3 10 KDLEDKYRVSRW-QPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI-----NDEFYW 62 (64)
T ss_dssp HHHHHHHHHHTT-SCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES-----SSSBEE
T ss_pred HHHHHHHHHcCC-CCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----cccccc
Confidence 345555655443 48899999999999 999999999999999999998 356664
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.78 E-value=0.003 Score=40.11 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=39.3
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|+..|.+ +|+|..|||+.+|+ ...-+.++++.|...|++.+.
T Consensus 3 ~Il~~i~~----~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 3 RILKRIMK----SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CSHHHHHH----SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH----CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence 57788877 49999999999999 999999999999999999875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.55 E-value=0.031 Score=42.87 Aligned_cols=88 Identities=17% Similarity=0.081 Sum_probs=60.6
Q ss_pred eEEEEcCCc--hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-CCCCCcEEEeccccccCCchHHHH
Q 018576 193 QLVDVGGNL--GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-SVPKGDAIFLKWILHDWDDEHCLK 268 (353)
Q Consensus 193 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~~~~~Lh~~~~~~~~~ 268 (353)
+|+=||||. +.++..|.+..+..+++++|. ++.++.+++...+.....+... .....|+|++.- +.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 577899994 456667777778889999998 6677777665444443333322 122348888763 3456789
Q ss_pred HHHHHHHhCCCCCEEEE
Q 018576 269 LLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 269 ~L~~~~~~L~pgG~l~i 285 (353)
++.++...++++..+.-
T Consensus 78 vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred hhhhhhccccccccccc
Confidence 99999999998866543
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=95.48 E-value=0.0086 Score=43.99 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=40.9
Q ss_pred hhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 38 FQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 38 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
+-.|+.. +++|.++||+.+++ ++..++++|+.|...|+|+-. .|. ++.| ++.
T Consensus 10 L~~la~~---~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~--rG~-~GGy-Lar 61 (127)
T d1xd7a_ 10 LSLISMD---EKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSR--AGV-PGAS-LKK 61 (127)
T ss_dssp HHHHHTC---SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC--SSS-SSCE-ESS
T ss_pred HHHHhcC---CCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCccccc--CCC-CCcc-ccC
Confidence 3444444 48999999999999 999999999999999999865 443 4446 663
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.34 E-value=0.022 Score=42.43 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=49.7
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceecccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYY 105 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l 105 (353)
..+.-++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+. ++. .-.+.+|+.|..+
T Consensus 36 ~~q~~vL~~l~~~---~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R-~~~l~lT~~G~~~ 103 (141)
T d1lnwa_ 36 PPDVHVLKLIDEQ---RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQR-SFQLFLTDEGLAI 103 (141)
T ss_dssp HHHHHHHHHHHSS---TTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSS-SEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCc-chhhccCHHHHHH
Confidence 4566677788765 37999999999999 99999999999999999998741 221 2235666665533
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0085 Score=38.95 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=41.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
+..|+..|... +|.|..|||+.+|+ ....+.++++.|...|+|.+.
T Consensus 7 ~~~Il~~i~~~---g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 7 AGAVYRLIDQL---GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHHSS---CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 44578888886 59999999999999 999999999999999999864
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.14 E-value=0.0076 Score=45.36 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=50.8
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|...+ |++|..+||+.+++ ++..+.++++-|+..|+|++.+ .|. -.-.+.+|+.|..+.
T Consensus 34 ~~q~~vL~~L~~~~--g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~Dr-R~~~i~LT~~G~~~~ 103 (145)
T d2hr3a1 34 FSQLVVLGAIDRLG--GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDG-RRTRVSLSSEGRRNL 103 (145)
T ss_dssp HHHHHHHHHHHHTT--SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC-------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccch-hHHHhccCHHHHHHH
Confidence 35666777776543 58999999999999 9999999999999999999873 111 123467777766544
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.13 E-value=0.0062 Score=41.64 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=44.0
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccccccC
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYVP 107 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~~ 107 (353)
+.+...|...+++ +...+..+|+.|...|++.+. +..|.+|+.|..++.
T Consensus 18 g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~------~~~Y~iT~kG~~~L~ 66 (90)
T d1r7ja_ 18 GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE------GKQYMLTKKGEELLE 66 (90)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECHHHHHHHH
T ss_pred CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeec------CCEEEECccHHHHHH
Confidence 3578999999999 999999999999999999875 688999999987774
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=95.08 E-value=0.0051 Score=43.91 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=39.9
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
+..|+..|...+ +|+|+.+||+.+++ ++..+.+.|+.|...|+|.+..
T Consensus 23 ~~~iL~~L~~~~--~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 23 DVAVLLKMVEIE--KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEee
Confidence 445666564432 58999999999999 9999999999999999999873
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=95.02 E-value=0.027 Score=41.54 Aligned_cols=69 Identities=7% Similarity=0.143 Sum_probs=51.7
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
..++.++..|...+ +++.|..+||+.+++ +...+.+.++.|+..|++.+.. .++ -.-.+.+|+.|..+.
T Consensus 29 ~~q~~vL~~l~~~~-~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~-R~~~i~lT~~G~~~~ 99 (135)
T d3broa1 29 GTQMTIIDYLSRNK-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDS-RQKCLKLTKKANKLE 99 (135)
T ss_dssp HHHHHHHHHHHHTT-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCT-TSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHHcC-CCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhcccHHHHHHH
Confidence 35556677777642 257999999999999 9999999999999999999873 111 123577887766544
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.89 E-value=0.031 Score=47.74 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=66.0
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCC-CCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC-CC-CCC-cEEEe--
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYP-YIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ-SV-PKG-DAIFL-- 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-p~~-D~i~~-- 254 (353)
...+.+|||+.+|.|+=+..++.... +..++..|. +.-+...++ ..++.+...|... +. ... |.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45678999999999999999988774 568899997 333333221 2456666666554 21 222 66654
Q ss_pred -----------ccccccCCchH-------HHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 255 -----------KWILHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 255 -----------~~~Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
..+...+..++ -.++|.++.+.+||||+|+-......
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 11122222222 23788999999999999888776543
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=94.81 E-value=0.021 Score=42.66 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=49.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
+..++..|... +|.|+.+||+.+++ ++..+.+.++.|+..|++++.+ +. .+. .+.+|+.|..+.
T Consensus 37 q~~iL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~-~~-~D~R~~~v~lT~~G~~~~ 103 (143)
T d1s3ja_ 37 QLFVLASLKKH---GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NT-KDRRVIDLSLTDEGDIKF 103 (143)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CS-SCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeee-ec-CCCCceEEEECHHHHHHH
Confidence 33467777776 48999999999999 9999999999999999999873 11 122 366776666544
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.78 E-value=0.0087 Score=42.68 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=40.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..++..|... |+.|+.+||+.+|+ +...+.+.|+-|...|+|.+.
T Consensus 21 ~e~~v~~~L~~~---g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 21 SDVRIYSLLLER---GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence 345566677665 49999999999999 999999999999999999876
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.024 Score=42.01 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=51.0
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.++++.|+..|++++.+. ++ -.-.+.+|+.|..+.
T Consensus 35 ~q~~vL~~l~~~---~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~~D~-R~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 35 AQFKVLCSIRCA---ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNPNDK-RGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTCS-SCEEEEECHHHHHHH
T ss_pred HHHHHHHhHHhC---cCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeeccCCC-CeeEEEECHHHHHHH
Confidence 456667777766 48999999999999 99999999999999999998741 11 123577777776554
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.033 Score=46.84 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=65.1
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhh----CCCC--CCeeEEeCCCCC--C-CCCC-cEEEec-
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEH----APLH--PHIEHVAGDMFQ--S-VPKG-DAIFLK- 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~--~rv~~~~~d~~~--~-~p~~-D~i~~~- 255 (353)
...+.+|||+.+|.|+=+..++....+.+++..|. +.-+.. .++. ..+.....|... . .+.. |.|++-
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56678999999999999999999888888999997 222222 2111 234444444332 1 1122 655431
Q ss_pred -----c-------ccccCCchH-------HHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 256 -----W-------ILHDWDDEH-------CLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 256 -----~-------~Lh~~~~~~-------~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
. +.+.|+..+ -.++|+++.+.|+|||+|+-.....
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 1 222233222 2378999999999999999877654
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.011 Score=43.99 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=51.8
Q ss_pred HHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCc---cceeccccccccc
Q 018576 32 VYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGAR---RRYSLNSVSKYYV 106 (353)
Q Consensus 32 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~---~~y~~t~~~~~l~ 106 (353)
..+.-++..|... ++.|+.+||+.+++ ++..+.+.++.|++.|++.+.. +. .+ -...+|+.|..+.
T Consensus 32 ~~q~~iL~~l~~~---~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~-~~-~D~R~~~l~lT~~G~~~~ 100 (140)
T d2etha1 32 TTELYAFLYVALF---GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DP-VDRRTYRVVLTEKGKEIF 100 (140)
T ss_dssp HHHHHHHHHHHHH---CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CT-TTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeee-cc-cccchhhhhcCHHHHHHH
Confidence 3566688888887 48999999999999 9999999999999999999874 21 12 3466666665443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.046 Score=46.82 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=41.0
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhC---CCCCCeeEEeCCCCC
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHA---PLHPHIEHVAGDMFQ 244 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~~~rv~~~~~d~~~ 244 (353)
....|||||+|.|.++..|++..-.-++++++. +...+.. ...+++.++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998743347888887 3333322 234789999999874
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=94.41 E-value=0.024 Score=41.96 Aligned_cols=66 Identities=8% Similarity=0.119 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++-|+..|++++... |+. .-...+|+.|..+.
T Consensus 35 ~q~~vL~~i~~~---~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~~D~R-~~~l~lT~~G~~~~ 102 (136)
T d2bv6a1 35 PQFLVLTILWDE---SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQR-EVFIHLTDKSETIR 102 (136)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecCCccc-chhhccCHHHHHHH
Confidence 455667778776 48999999999999 99999999999999999998731 111 22456777776543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.41 E-value=0.045 Score=43.17 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=67.1
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEe---CCCCCC---C--CCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVA---GDMFQS---V--PKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~~---~--p~~-D~i~~~~ 256 (353)
.+++.+||-+|||. |..+..+++.....++++.|. ++-++.+++..--..+. .|+.+. + +.+ |+++-.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 67788999999997 667788888888789999998 66677776653222221 111110 1 123 7776432
Q ss_pred cc------c-cCCchHHHHHHHHHHHhCCCCCEEEEEeeecCC
Q 018576 257 IL------H-DWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPE 292 (353)
Q Consensus 257 ~L------h-~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 292 (353)
-. | ..........|+.+.+.++|||++.++-...++
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~ 145 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTE 145 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCC
Confidence 11 0 000111246799999999999999998754433
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.29 E-value=0.015 Score=43.79 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=41.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
....|+..|..++ +|+|+.|||+.+|+ +...+.+.|+.|...|+|.+..
T Consensus 27 ~~~~i~~~L~~~~--~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 27 SVGAVYAILYLSD--KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHHHHCS--SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEEE
Confidence 3445666675443 58999999999999 9999999999999999999874
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=94.28 E-value=0.031 Score=38.58 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=54.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccC-CCC
Q 018576 15 YANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDG-SGA 92 (353)
Q Consensus 15 ~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~-g~~ 92 (353)
..++++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|++++...+ .+.
T Consensus 3 ~~l~ilg~kW~l~Il~~---------L~~----g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~ 65 (95)
T d2hzta1 3 ATLEVIGGKWKCVILCH---------LTH----GKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPP 65 (95)
T ss_dssp HHHHHHCSTTHHHHHHH---------HTT----CCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred HHHHHHcCCCHHHHHHH---------HHc----CCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheecccccc
Confidence 34455556666555543 333 488999999998 89 999999999999999999987311 111
Q ss_pred ccceeccccccccc
Q 018576 93 RRRYSLNSVSKYYV 106 (353)
Q Consensus 93 ~~~y~~t~~~~~l~ 106 (353)
.-.|.+|+.|..+.
T Consensus 66 ~veY~LT~~G~~L~ 79 (95)
T d2hzta1 66 KVEYELSEYGRSLE 79 (95)
T ss_dssp EEEEEECTTGGGGH
T ss_pred chhhhhhhhHHHHH
Confidence 23399998888766
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.12 E-value=0.022 Score=42.53 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCC
Q 018576 13 FAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGA 92 (353)
Q Consensus 13 ~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~ 92 (353)
+...++++..-|...+|..+ .. |+.+..||.+.+|+ .+..|.+=|+.|...|++.+.......
T Consensus 10 v~~~l~ilg~kW~l~Il~~l---------~~----G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~~p~ 72 (142)
T d2f2ea1 10 VARPLDVIGDGWSMLIVRDA---------FE----GLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGS 72 (142)
T ss_dssp TTTTHHHHCSSSHHHHHHHH---------HT----TCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred HHHHHHHHcCCCHHHHHHHH---------Hc----CCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCCCCC
Confidence 34556677777777777654 23 48999999999999 889999999999999999985322212
Q ss_pred ccceeccccccccc
Q 018576 93 RRRYSLNSVSKYYV 106 (353)
Q Consensus 93 ~~~y~~t~~~~~l~ 106 (353)
.-.|.+|+.|..|.
T Consensus 73 r~~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 73 HQEYRLTDKGRALF 86 (142)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eeEEecCcCcchHH
Confidence 34599998888765
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.011 Score=54.61 Aligned_cols=110 Identities=12% Similarity=0.048 Sum_probs=66.2
Q ss_pred hHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC----CC--------------CeEEEecc-hHHHhhCCC----C-
Q 018576 177 IMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY----PY--------------IKGINFDQ-PHVIEHAPL----H- 232 (353)
Q Consensus 177 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~~~~a~~----~- 232 (353)
++..+++.+. .....+|+|-.||+|.++....+.. .. ....++|. +.+...++- +
T Consensus 152 Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 152 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 3444455444 4556799999999999998766532 11 24688887 444443321 1
Q ss_pred ------CCeeEEeCCCCC-CC-C-C-CcEEEeccccccC-------------CchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 233 ------PHIEHVAGDMFQ-SV-P-K-GDAIFLKWILHDW-------------DDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 233 ------~rv~~~~~d~~~-~~-p-~-~D~i~~~~~Lh~~-------------~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
..-.+..++.+. +. . . .|+|+++--+-.- +.. -..++.++.+.|+|||++.++-+
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhccccCcEEEEEe
Confidence 122344555544 21 1 1 2888877544210 111 23689999999999999988764
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.02 Score=33.93 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=46.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceec
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSL 98 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~ 98 (353)
|-.|++.|.++| +|+.+.+|++++++ +..-+.++|..|-..+-+... +.++|++
T Consensus 3 EQkILQVL~dag--spvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~-----~patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDG--GPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP-----EPATWSI 56 (57)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE-----ETTEEEE
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccC-----CCccccC
Confidence 556888898876 79999999999999 889999999999999998876 3567764
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.88 E-value=0.022 Score=35.59 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=40.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
.+..|+..|... +..|..+||+.+|+ ++..+.+-++.|...|++..
T Consensus 4 ~D~kIl~~L~~n---~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 4 RDKIILEILEKD---ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 356678888886 58999999999999 99999999999999999975
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.85 E-value=0.14 Score=38.69 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=56.1
Q ss_pred eEEEEcCC--chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCCCCCcEEEeccccccCCchHHHHH
Q 018576 193 QLVDVGGN--LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSVPKGDAIFLKWILHDWDDEHCLKL 269 (353)
Q Consensus 193 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~~~~~Lh~~~~~~~~~~ 269 (353)
+|.=||+| .+.++..|.++ +.+++++|. ++.++.+++...+.....+ .+...+.|+|++. .+.....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~~~-~~~~~~~DiIila-----vp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAGQD-LSLLQTAKIIFLC-----TPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEESC-GGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceeeee-ccccccccccccc-----CcHhhhhhh
Confidence 56778887 44555666554 568999998 6666666554333222222 1234445998875 345778899
Q ss_pred HHHHHHhCCCCCEEEEE
Q 018576 270 LKNCYKSVPEDGKVIVV 286 (353)
Q Consensus 270 L~~~~~~L~pgG~l~i~ 286 (353)
++++...++|+..++-.
T Consensus 74 l~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 74 LEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp HHHHGGGSCTTCEEEEC
T ss_pred hhhhhhhcccccceeec
Confidence 99999999998866543
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.67 E-value=0.028 Score=35.11 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=41.8
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|.+. +..|..+||+.+|+ .+..+.+-++.|...|++...
T Consensus 4 ~D~~Il~~L~~n---~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 4 IDKKIIKILQND---GKAPLREISKITGL----AESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence 466788899986 48999999999999 999999999999999999853
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=93.65 E-value=0.026 Score=35.35 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.+..+||+.+|+ .+.-+...++-|...|+++++
T Consensus 20 ~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~~ 54 (61)
T d2ev0a1 20 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE 54 (61)
T ss_dssp SSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred CCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence 48999999999999 999999999999999999986
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=93.56 E-value=0.029 Score=35.41 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=41.3
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVEC 85 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~ 85 (353)
.+..|+..|... +..|..+||+.+|+ .+.-+.+=++-|...|++..
T Consensus 6 ~D~~IL~~L~~n---~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 6 IDLNIIEELKKD---SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHHHHC---SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 456788889886 59999999999999 99999999999999999985
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=93.52 E-value=0.013 Score=43.55 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=50.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.+.-++..|... +|.|..+||+.+++ ++..+.+.++-|+..|++++... |+ -.-.+.+|+.|..+.
T Consensus 31 ~q~~iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~-R~~~i~LT~~G~~~~ 98 (139)
T d2a61a1 31 AQFDILQKIYFE---GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADR-RAYFLVITRKGEEVI 98 (139)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEE-EEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCC-CeEEEEECHHHHHHH
Confidence 345566677665 48999999999999 99999999999999999998731 11 123477777776554
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.026 Score=35.65 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=41.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+..|+..|... +..|..+||+.+|+ ++..+.+=++.|.+.|++...
T Consensus 6 ~D~~IL~~L~~~---~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~~ 52 (63)
T d2cg4a1 6 LDRGILEALMGN---ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 52 (63)
T ss_dssp HHHHHHHHHHHC---TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence 456788889886 58999999999999 999999999999999999853
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=93.32 E-value=0.026 Score=41.96 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLN 99 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t 99 (353)
.++|.++||+.+++ ++..++++|+.|...|+|+-. .| .+.|.+.
T Consensus 22 ~~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~--rG--~GG~~L~ 65 (138)
T d1ylfa1 22 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN--RG--PGGAGLL 65 (138)
T ss_dssp GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC-------CCEEES
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee--cC--CCCceec
Confidence 48999999999999 999999999999999999875 34 2556665
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=93.31 E-value=0.029 Score=39.22 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeecc
Q 018576 10 DQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLD 88 (353)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (353)
.=+....++++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|++.|+|.+...
T Consensus 7 ~Cpv~~~l~ilg~kW~l~Il~~---------L~~----g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~ 69 (102)
T d2fswa1 7 ECPVRKSMQIFAGKWTLLIIFQ---------INR----RIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQY 69 (102)
T ss_dssp TCHHHHHHHHHTSSSHHHHHHH---------HTT----SCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHcCCCHHHHHHH---------Hcc----CCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeeccc
Confidence 3467888899999998877654 233 388999999998 89 99999999999999999998731
Q ss_pred -CCCCccceeccccccccc
Q 018576 89 -GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 89 -~g~~~~~y~~t~~~~~l~ 106 (353)
+.+..-.|.+|+.|..+.
T Consensus 70 ~~~p~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 70 PEVPPRVEYSLTPLGEKVL 88 (102)
T ss_dssp CSSSCEEEEEECHHHHTTH
T ss_pred CCCCCeehhhhhHhHHHHH
Confidence 111123499999887765
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.26 E-value=0.028 Score=41.56 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=45.9
Q ss_pred hChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 35 LGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 35 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
..++-.|...+ ++.|..+||+.+++ ++..+.++++.|+..|++++.+. |+. .-...+|+.|..+.
T Consensus 31 ~~iL~~l~~~~--~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~~D~R-~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 31 WLVLLHLARHR--DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRR-AKHIVLTPKADVLI 97 (137)
T ss_dssp HHHHHHHHHCS--SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBC-SCEEEECTTHHHHH
T ss_pred HHHHHHHHHcC--CCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCCCCCC-chhhhcCHHHHHHH
Confidence 33455555442 36899999999999 99999999999999999998731 111 12355666555443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.76 Score=34.60 Aligned_cols=95 Identities=7% Similarity=-0.072 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC----------CCCC-cEEEe
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS----------VPKG-DAIFL 254 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~----------~p~~-D~i~~ 254 (353)
.++..+||=+|+|. |..+..+++.....++++.|. +.-++.+++..--.+...+-.++ .+.+ |+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 56678999999985 556667777776668999998 66677666542112222211111 1223 77665
Q ss_pred ccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 255 KWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 255 ~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
.-- . ...++...+.++|||++++.-...
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred ccC-----C---chhHHHHHHHhcCCCEEEEEecCC
Confidence 422 1 356888999999999999987543
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.076 Score=32.17 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=36.2
Q ss_pred hhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 40 IIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 40 ~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.|.+-|++...|+..||.++++ ...-+.|.|-.|...|-+.++
T Consensus 7 ~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~ 49 (59)
T d2gxba1 7 FLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE 49 (59)
T ss_dssp HHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhc
Confidence 3333233368999999999999 899999999999999999986
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=92.78 E-value=0.026 Score=41.78 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=51.3
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCC-CCccceecccccccccCC
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGS-GARRRYSLNSVSKYYVPN 108 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g-~~~~~y~~t~~~~~l~~~ 108 (353)
+..++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.+.+... .-.-...+|+.|..+...
T Consensus 35 q~~vL~~l~~~---~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~ 103 (137)
T d1z91a1 35 QYLALLLLWEH---ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK 103 (137)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHHH
Confidence 44556677665 48999999999999 9999999999999999999874111 012337888888766543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.77 E-value=0.19 Score=38.70 Aligned_cols=95 Identities=17% Similarity=0.060 Sum_probs=60.7
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeC---CCCC------C--CCCC-cEEE
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAG---DMFQ------S--VPKG-DAIF 253 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~------~--~p~~-D~i~ 253 (353)
...+.+||-+|+| .|.++..+++.....+++++|. ++-.+.+++..--.++.. |..+ . -+.+ |+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5667899999998 4788889999875458999997 555666655421122221 1111 0 1223 7766
Q ss_pred eccccccCCchHHHHHHHHHHHhCCCCCEEEEEeeec
Q 018576 254 LKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELML 290 (353)
Q Consensus 254 ~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~~ 290 (353)
-.- .. ...++...+.|+|||+++++-...
T Consensus 106 d~v-----G~---~~~~~~a~~~l~~~G~iv~~G~~~ 134 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLRRGGFYSVAGVAV 134 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEEEEEEEEECCCCS
T ss_pred ecC-----Cc---hhHHHHHHHHhcCCCEEEEEeecC
Confidence 331 11 245788889999999999887543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.73 E-value=0.047 Score=47.71 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=66.2
Q ss_pred CCCeEEEEcCCchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC---------------------CCeeEEeCCCCC---
Q 018576 190 NIKQLVDVGGNLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH---------------------PHIEHVAGDMFQ--- 244 (353)
Q Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~rv~~~~~d~~~--- 244 (353)
++.+|||..||+|..++..+...+..+++..|. +..++.++++ ..+.....|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 368999999999999999888887778999998 6666655432 124455555533
Q ss_pred CCCCC-cEEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 245 SVPKG-DAIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 245 ~~p~~-D~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
...+. |+|.+-- +... ..+|..+.++++.||.|.|.-.
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhccCCEEEEEec
Confidence 12233 8887764 2222 4789999999999999988654
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=92.73 E-value=0.084 Score=37.19 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 9 RDQSFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..-+....++++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|+|.+..
T Consensus 5 ~~c~i~~al~iig~kW~~~Il~~---------L~~----g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~ 67 (108)
T d1z7ua1 5 KQTSINLALSTINGKWKLSLMDE---------LFQ----GTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRES 67 (108)
T ss_dssp HHHHHHHHHHTTCSTTHHHHHHH---------HHH----SCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred cCCcHHHHHHHHcCCCHHHHHHH---------HHc----CCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeec
Confidence 34567777888888888776654 444 488999999998 79 9999999999999999999863
Q ss_pred cC-CCCccceeccccccccc
Q 018576 88 DG-SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 88 ~~-g~~~~~y~~t~~~~~l~ 106 (353)
.+ .+..-.|.+|+.|..+.
T Consensus 68 ~~~~p~~veY~LT~~G~~L~ 87 (108)
T d1z7ua1 68 FNELPPRVEYTLTPEGYALY 87 (108)
T ss_dssp ECCSSCEEEEEECHHHHHHH
T ss_pred cCCCcceehhhhchhHHHHH
Confidence 11 11123399998888765
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.71 E-value=0.017 Score=42.78 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=49.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCC--ccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGA--RRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~--~~~y~~t~~~~~l~ 106 (353)
.+..++..|... ++.|..+||+.+++ ++..+.+.++-|+..|++++.+ +..+ .-...+|+.|..+.
T Consensus 31 ~q~~vL~~l~~~---~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~-~~~D~R~~~l~lT~~G~~~~ 98 (136)
T d2fbia1 31 QQWRVIRILRQQ---GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQRRVYVNLTEKGQQCF 98 (136)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEee-cCccCchhhhccCHHHHHHH
Confidence 345566777776 48999999999999 9999999999999999999873 2111 12366666666444
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.66 E-value=0.022 Score=44.10 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=47.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc--CCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD--GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~--~g~~~~~y~~t~~~~~l~ 106 (353)
.++.|+..|...++..++|..+||+.+++ ++..+.+.++-|+..|+|++... |+. .-...+|+.|..+.
T Consensus 63 ~q~~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~~~~DrR-~~~i~LT~~G~~l~ 133 (172)
T d2fbka1 63 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRR-SASIRLTPQGRALV 133 (172)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC--------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeeccccchh-hHHhhcCHHHHHHH
Confidence 34445566665443235899999999999 99999999999999999998731 111 12355666665444
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=92.25 E-value=0.04 Score=39.37 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeecc-C
Q 018576 12 SFAYANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLD-G 89 (353)
Q Consensus 12 ~~~~l~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~ 89 (353)
.....++++.+-|...+|.. |.. |+....||.+.+ |+ .+..|.+=|+.|+..|+|.+... .
T Consensus 13 pv~~~l~~ig~kW~l~Il~~---------L~~----g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~~ 75 (114)
T d1yyva1 13 PSREVLKHVTSRWGVLILVA---------LRD----GTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYPV 75 (114)
T ss_dssp THHHHHHHHHSHHHHHHHHH---------GGG----CCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECS
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hhc----CCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccCC
Confidence 45677888888888777654 334 488999999999 79 89999999999999999998741 1
Q ss_pred CCCccceeccccccccc
Q 018576 90 SGARRRYSLNSVSKYYV 106 (353)
Q Consensus 90 g~~~~~y~~t~~~~~l~ 106 (353)
....-.|.+|+.|..+.
T Consensus 76 ~p~~veY~LT~~G~~L~ 92 (114)
T d1yyva1 76 VPPHVEYSLTPLGEQVS 92 (114)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCchhHhHhhHhHHHHH
Confidence 11124499999888776
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.23 E-value=0.086 Score=33.09 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=33.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
++.+..+||+.+|+ .+.-+.+.++-|...|++.++
T Consensus 22 ~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~~ 56 (63)
T d2isya1 22 VTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA 56 (63)
T ss_dssp CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence 58999999999999 999999999999999999986
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.097 Score=33.43 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=46.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhC-CCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQL-PTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
...||+.|...+...++++.+|++++ ++ +..-++.-++.|.+.|++--. . +++.|+.|.
T Consensus 8 q~~V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT-i---DddHfkstd 67 (69)
T d1dpua_ 8 QNQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST-V---DDDHFKSTD 67 (69)
T ss_dssp HHHHHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC-S---STTEEEESS
T ss_pred HHHHHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc-c---ccchhcccC
Confidence 44566666654334679999999999 79 899999999999999999865 3 368887764
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=92.14 E-value=0.031 Score=41.79 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=47.1
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCcc---ceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARR---RYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~---~y~~t~~~~~l~ 106 (353)
+.-++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++.+ +. .+. ...+|+.|..+.
T Consensus 31 q~~iL~~i~~~---~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~-~~-~D~R~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 31 QYLYLVRVCEN---PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DA-SNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CS-SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccC-CC-CCCCccccccCHHHHHHH
Confidence 34455556665 37999999999999 9999999999999999999874 21 122 455665555433
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=92.05 E-value=0.031 Score=41.42 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceeccccccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l~ 106 (353)
.+.-++..|...+ ++.|..+||+.+++ ++..+.+.++.|+..|++++.+ .|+. .-.+.+|+.|..+.
T Consensus 32 ~~~~~L~~l~~~~--~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~~~D~R-~~~l~lT~~G~~~~ 100 (140)
T d3deua1 32 THWVTLHNIHQLP--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRR-AKRIKLTEKAEPLI 100 (140)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC---------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecccCCCCC-ceeeEECHHHHHHH
Confidence 3444566666532 36999999999999 9999999999999999999763 1111 12577777776555
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.02 E-value=0.68 Score=35.21 Aligned_cols=93 Identities=14% Similarity=-0.031 Sum_probs=62.5
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEe---CCCCC-C-----CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVA---GDMFQ-S-----VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~-~-----~p~~-D~i~~~ 255 (353)
.+.+.+||=+|||. |..+..+++.....+++..|. ++-.+.+++..--.++. .|-.. . .+.+ |+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 66778999999996 889999999987778999998 55566666543223322 12110 0 1223 777543
Q ss_pred cccccCCchHHHHHHHHHHHhCCCC-CEEEEEee
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPED-GKVIVVEL 288 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pg-G~l~i~e~ 288 (353)
- .. ...+....+.++|| |+++++-.
T Consensus 106 ~-----G~---~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 A-----GT---AQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp S-----CC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred c-----cc---chHHHHHHHHhhcCCeEEEecCC
Confidence 2 12 36688999999997 99998764
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=91.99 E-value=0.024 Score=40.70 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=47.2
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec--cCCCCccceecccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL--DGSGARRRYSLNSVSKYY 105 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~--~~g~~~~~y~~t~~~~~l 105 (353)
++.++..|...+ ++++|..+||+.+++ ++..+.+.++.|+..|++++.+ +|+ -.-...+|+.|...
T Consensus 35 q~~vL~~l~~~~-~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~-R~~~i~LT~~G~~~ 102 (115)
T d2frha1 35 EFAVLTYISENK-EKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDE-RTVLILVNAQQRKK 102 (115)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSS-CCCEEECCSHHHHH
T ss_pred HHHHHHHHHcCC-CCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCC-ceEEEEECHHHHHH
Confidence 344555565432 247899999999999 9999999999999999999984 111 12235666666543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.51 E-value=0.11 Score=39.63 Aligned_cols=93 Identities=15% Similarity=0.031 Sum_probs=57.3
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEe-CCCCC---CCCCC-cEEEec-cccc
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVA-GDMFQ---SVPKG-DAIFLK-WILH 259 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~-~d~~~---~~p~~-D~i~~~-~~Lh 259 (353)
..++.+||-+|+| .|.++..+++.. +++++++|. ++-++.+++..--.++. .+..+ ...++ |+++-. ..-+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6678899999998 677888888865 679999997 55566665431112222 11111 22334 766543 2222
Q ss_pred cCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 260 DWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 260 ~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
.. .+....+.|+|+|+++++-.
T Consensus 104 ~~-------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEEEEEEEECCC
T ss_pred cc-------hHHHHHHHhhccceEEEecc
Confidence 11 13456778999999999764
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=91.26 E-value=0.042 Score=39.33 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=39.8
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
++.++..|.... +++.|..+||+.+++ ++..+.+.++.|+..|++.+.+
T Consensus 34 q~~vL~~l~~~~-~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~ 82 (115)
T d1hsja1 34 EIYILNHILRSE-SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR 82 (115)
T ss_dssp HHHHHHHHHTCS-CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHHHHccC-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEe
Confidence 444566665321 147999999999999 9999999999999999999874
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=91.12 E-value=0.038 Score=42.22 Aligned_cols=66 Identities=15% Similarity=-0.017 Sum_probs=48.4
Q ss_pred HhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeecc-CCCCccceeccccccccc
Q 018576 34 ELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLD-GSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 34 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~-~g~~~~~y~~t~~~~~l~ 106 (353)
+..++..|... ++.|+.+||+.+++ +...+.+.++.|...|++++.+. +..-.-...+|+.|..+.
T Consensus 43 q~~vL~~l~~~---~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 109 (162)
T d2fxaa1 43 EHHILWIAYQL---NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 109 (162)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHhhhccC---CCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence 34467777765 48999999999999 99999999999999999998731 110122366666666544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.26 Score=41.27 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=41.8
Q ss_pred cCCCCeEEEEcCCchHHHHHHHHHC-CCCeEEEecc-hHHHhhCCC------CCCeeEEeCCCCC
Q 018576 188 FANIKQLVDVGGNLGVTLQAITSKY-PYIKGINFDQ-PHVIEHAPL------HPHIEHVAGDMFQ 244 (353)
Q Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 244 (353)
...+.+|||+.+|.|+-+..++... +..+++.+|. +.-++..++ ..++.+...|+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 4567899999999999999988765 5678899998 333433322 2568888888754
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=90.68 E-value=0.13 Score=33.07 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=32.3
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
-|-|+.|||+.+|++ .+..+.+.|+.|+..|++++.
T Consensus 23 ~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~ 58 (71)
T d1jhfa1 23 MPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV 58 (71)
T ss_dssp SCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence 478999999999993 566799999999999999986
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.61 E-value=0.27 Score=37.54 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred HHhccccCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC------C-CCC-cE
Q 018576 182 LESYKGFANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS------V-PKG-DA 251 (353)
Q Consensus 182 ~~~~~~~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~------~-p~~-D~ 251 (353)
.+... .+++.+||=+|||. |..+..+++.....++++.|. +.-++.+++..-.+++..+-.+. . +.+ |+
T Consensus 21 ~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 21 INALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp HTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred HHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 33334 66778999999984 456778888877667888887 55566665543233333221111 1 223 76
Q ss_pred EEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 252 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 252 i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
|+-.- .. ...++.+.+.++|+|+++++-.
T Consensus 100 vid~~-----G~---~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALEST-----GS---PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECS-----CC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcC-----Cc---HHHHHHHHhcccCceEEEEEee
Confidence 55331 11 3567888999999999998754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.46 E-value=0.82 Score=34.28 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=60.1
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCC-CeeEEeCCCCCC-----------CCCC-cEE
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHP-HIEHVAGDMFQS-----------VPKG-DAI 252 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-rv~~~~~d~~~~-----------~p~~-D~i 252 (353)
...+.+||-+||| .|..+..+++... .+++++|. ++-++.+++.. ...+..-+.... .+.+ |++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5667899999988 6777778887764 69999998 56666666542 222222111111 1223 766
Q ss_pred EeccccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 253 FLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 253 ~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
+=.- .. ...+..+.+.++|+|++++.-..
T Consensus 103 id~~-----g~---~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCS-----GN---EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECS-----CC---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecC-----CC---hHHHHHHHHHHhcCCceEEEecC
Confidence 5432 11 35688888999999999988743
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=90.32 E-value=0.068 Score=38.78 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=40.7
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.+.-++..|...+ ++++|..+||+.+++ ++..+.+.++-|+..|+|++..
T Consensus 34 ~q~~vL~~l~~~~-~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~ 83 (125)
T d1p4xa2 34 VEFTILAIITSQN-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER 83 (125)
T ss_dssp HHHHHHHHHHTTT-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHHHHHHHcc-CCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeee
Confidence 4445667775432 147899999999999 9999999999999999999873
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=90.26 E-value=0.11 Score=33.68 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccc
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNS 100 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~ 100 (353)
++|-++||+.+|+ ....+.|.|..|...|+++.. .+.+.+..
T Consensus 27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~~------~~~i~I~d 68 (73)
T d1zyba1 27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH------RKEILIPD 68 (73)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE------TTEEEESC
T ss_pred ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec------CCEEEEcc
Confidence 5799999999999 999999999999999999975 45565543
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=89.94 E-value=0.099 Score=37.82 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=41.4
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.++-|+..|...+ .+++|..+||+.+++ .+..+.+.++.|...|+|.+..
T Consensus 35 ~q~~iL~~l~~~~-~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~ 84 (125)
T d1p4xa1 35 KEFILLTYLFHQQ-ENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVR 84 (125)
T ss_dssp HHHHHHHHHHSCS-CSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHHhc-cCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeec
Confidence 4555666675532 257999999999999 9999999999999999999984
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=89.70 E-value=0.11 Score=33.37 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec-cCCCCccceeccccccccc
Q 018576 47 GAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL-DGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 47 ~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~-~~g~~~~~y~~t~~~~~l~ 106 (353)
++|-|+..|+++.++ +-..++|.|-.|.+.|+++..- ++| .+.=++|+.+..++
T Consensus 22 g~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~edG--~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 22 ATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADG--RGHASLTQEGAALA 76 (81)
T ss_dssp CCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTS--CEEEEECHHHHHHH
T ss_pred CCCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccCC--cceeeccHHHHHHH
Confidence 479999999999999 8889999999999999998764 444 46677777776544
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=88.45 E-value=0.37 Score=41.63 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=38.8
Q ss_pred CchHHHHHHHHHHhchhhhHHHHHHhccccCCCCeEEEEcCCchHHHHHHHHHC-------CCCeEEEecchHHH
Q 018576 159 DPRFNKHFNTAMYNHTSLIMSNILESYKGFANIKQLVDVGGNLGVTLQAITSKY-------PYIKGINFDQPHVI 226 (353)
Q Consensus 159 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 226 (353)
.|+....|...+..+ ...+...+. .++..+|+|+|+|+|.++..+++.+ ..+++..++.+..+
T Consensus 53 sp~is~~Fg~~ia~~----~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L 122 (365)
T d1zkda1 53 SPEISQMFGELLGLW----SASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 122 (365)
T ss_dssp HHHHCHHHHHHHHHH----HHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCchHHHHHHHHHHH----HHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence 355555666544321 112223333 4456799999999999999887653 23467888874443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.39 E-value=0.31 Score=37.20 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=60.6
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeC---CCCC---CC--CCC-cEEEecc
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAG---DMFQ---SV--PKG-DAIFLKW 256 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~---~~--p~~-D~i~~~~ 256 (353)
..++.+||=+|||. |..+..+++.....+++++|. ++-.+.+++..-.+++.- +..+ .. ..+ |+|+-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 66778899999986 888889999775568999998 555666654321222221 1111 11 123 7765442
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEeee
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELM 289 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~~ 289 (353)
- . ...++.+.+.++|+|+++++-..
T Consensus 105 g-----~---~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 105 G-----G---SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp S-----C---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred C-----C---HHHHHHHHHHHhcCCEEEEEeec
Confidence 2 1 24577788899999999997653
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=88.31 E-value=0.22 Score=32.67 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|.|-++||..+|+ ...-+.|.|+.|...|+++..
T Consensus 29 ~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~~ 62 (81)
T d2gaua1 29 YLSREELATLSNM----TVSNAIRTLSTFVSERMLALD 62 (81)
T ss_dssp CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 7899999999999 999999999999999999975
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.49 E-value=0.19 Score=31.96 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=32.4
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|+|-++||..+|+ ...-+.|.|+.|...|+++..
T Consensus 29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~~ 62 (69)
T d1i5za1 29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH 62 (69)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence 6899999999999 999999999999999999975
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.25 E-value=0.18 Score=33.62 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=38.6
Q ss_pred ChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 36 GIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 36 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
.|++.|.+.+ +.+|=++||+.+|+ ...-+++.|..|...|++.+..
T Consensus 22 ~v~~~L~~~~--~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~R 67 (88)
T d1q1ha_ 22 DVLRILLDKG--TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYRK 67 (88)
T ss_dssp HHHHHHHHHC--SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHhcc--CcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEEE
Confidence 4677665422 47999999999999 9999999999999999998763
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.22 Score=31.89 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=49.2
Q ss_pred HHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCc-CcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 33 YELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAP-TMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 33 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~-~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
.+..|++.|... ||.|+-.||..+|+ .. .-+.+.|..|...|-|.++ ++ .+-.|.++....
T Consensus 6 ~eekI~~~L~~~---g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~--~~-tPP~W~L~~~~~ 67 (73)
T d1xmka1 6 IKEKICDYLFNV---SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ--GT-TPPIWHLTDKKR 67 (73)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE--CS-SSCEEEECHHHH
T ss_pred HHHHHHHHHHHc---CCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecC--CC-CCCceeeecchh
Confidence 466788999887 58999999999999 66 4599999999999999986 22 356788876543
|
| >d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Putative arsenical resistance operon repressor AF0168 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.74 E-value=0.41 Score=30.48 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=52.1
Q ss_pred HHHHHHHHhChhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceecccccc
Q 018576 27 MAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSK 103 (353)
Q Consensus 27 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~ 103 (353)
.++..-++-.++..|.+ ..+-+||-+.+++ ...-++-.|.+|..-=.+++. ++.|+.|..|+
T Consensus 26 ~av~nPvRrkiLrmi~k-----grsedEIm~~l~L----SkkqldYHLk~LE~GfciErv------ge~w~~T~~G~ 87 (89)
T d1y0ua_ 26 YAVTNPVRRKILRMLDK-----GRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV------GERWVVTDAGK 87 (89)
T ss_dssp HHHSCHHHHHHHHHHHT-----TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE------TTEEEECTTTC
T ss_pred HHHhhHHHHHHHHHHHc-----cCCHHHHHHHhcc----CHHHHHHHHHHHHccceeEec------CCceeeccccc
Confidence 45566688888999987 6899999999999 888999999999887777776 68899987765
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.92 E-value=0.69 Score=34.62 Aligned_cols=91 Identities=12% Similarity=0.028 Sum_probs=56.9
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCCC------CCC-cEEEecccc
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQSV------PKG-DAIFLKWIL 258 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~------p~~-D~i~~~~~L 258 (353)
..++.+||=+|+| .|..+..+++.. +.+++++|. ++-++.+++..--.++..+-.+.. ..+ |.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 5667888889998 566777888877 479999998 556666665432233332211111 112 33332211
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 259 HDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 259 h~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
. ...+....+.|+|+|+++++-
T Consensus 103 ----~---~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 103 ----S---NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp ----C---HHHHHHHHTTEEEEEEEEECC
T ss_pred ----c---chHHHHHHHHhcCCcEEEEEE
Confidence 1 245788889999999999875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=85.91 E-value=0.098 Score=39.83 Aligned_cols=97 Identities=10% Similarity=0.131 Sum_probs=59.6
Q ss_pred CCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCC--CCeeEEeCCCCC---CCCCCcEEEeccccccCC
Q 018576 190 NIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLH--PHIEHVAGDMFQ---SVPKGDAIFLKWILHDWD 262 (353)
Q Consensus 190 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~rv~~~~~d~~~---~~p~~D~i~~~~~Lh~~~ 262 (353)
++.+|+=||+| .|..++..+... +.+++++|. ++.++..+.. .++++...+-.. .+.++|+|+..-.+-.-.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 47899999999 466777788877 579999998 5555544331 334444332211 233459888775543322
Q ss_pred chHHHHHHHHHHHhCCCCCEEEEEeeecC
Q 018576 263 DEHCLKLLKNCYKSVPEDGKVIVVELMLP 291 (353)
Q Consensus 263 ~~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 291 (353)
.+ .-+=++..+.||||+.+ +|...+
T Consensus 110 aP--~lIt~~mv~~Mk~GSVI--VDvaid 134 (168)
T d1pjca1 110 AP--ILVPASLVEQMRTGSVI--VDVAVD 134 (168)
T ss_dssp CC--CCBCHHHHTTSCTTCEE--EETTCT
T ss_pred cC--eeecHHHHhhcCCCcEE--EEeecC
Confidence 11 23346677899999865 455443
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=85.67 E-value=0.3 Score=30.99 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=33.2
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeec
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL 87 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (353)
..++..+||+.+|+ +..-+++-|+.|++.|+++..+
T Consensus 24 ~~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~~ 59 (69)
T d2hs5a1 24 ARLSEPDICAALDV----SRNTVREAFQILIEDRLVAHEL 59 (69)
T ss_dssp CEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET
T ss_pred CccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEEc
Confidence 46788999999999 9999999999999999999873
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.00 E-value=0.77 Score=34.48 Aligned_cols=97 Identities=24% Similarity=0.204 Sum_probs=60.3
Q ss_pred HhccccCCCCeEEEEcC-C-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCCC--------CCCC-c
Q 018576 183 ESYKGFANIKQLVDVGG-N-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQS--------VPKG-D 250 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--------~p~~-D 250 (353)
+... ..++.+||=+|| | .|..+..+++.....++++.|. ++-.+.+++..--.++..+-.+. .+.+ |
T Consensus 21 ~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 21 RKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp HHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred HHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 4444 667789999996 3 6677778888777678999997 54455554431112232222111 1223 7
Q ss_pred EEEeccccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 251 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 251 ~i~~~~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
+++-... . ...++.+.+.++|||+++++-.
T Consensus 100 ~vid~~g-----~---~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 100 AVIDLNN-----S---EKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEESCC-----C---HHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhcccc-----c---chHHHhhhhhcccCCEEEEecc
Confidence 6665321 1 3567778899999999998864
|
| >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Chlorophenol reduction protein CprK species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=84.40 E-value=0.32 Score=31.84 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=31.8
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|+|-++||..+|+ ...-+.|.|..|...|++...
T Consensus 30 ~lt~~elA~~~g~----sretvsr~l~~l~~~glI~~~ 63 (80)
T d3e5ua1 30 PLSQKSIGEITGV----HHVTVSRVLASLKRENILDKK 63 (80)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 7899999999999 999999999999999999874
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=84.09 E-value=0.61 Score=30.23 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+++ +..-+++-|+.|++.|++...
T Consensus 20 ~~LPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 55 (78)
T d3bwga1 20 DKLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQV 55 (78)
T ss_dssp CBCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 467 89999999999 999999999999999999987
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.94 E-value=0.49 Score=30.47 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCC-CHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 48 AKL-SASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 48 ~~~-t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
..+ |..+||+.+++ +..-+++-++.|++.|++...
T Consensus 25 ~~LPs~~eLa~~~~v----Sr~tvr~Al~~L~~~G~i~~~ 60 (74)
T d1hw1a1 25 TILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQ 60 (74)
T ss_dssp SBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 467 89999999999 999999999999999999987
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.81 E-value=1.1 Score=33.75 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=57.9
Q ss_pred cCCCCeEEEEcC--CchHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEe---CCCCCCC-----CCC-cEEEec
Q 018576 188 FANIKQLVDVGG--NLGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVA---GDMFQSV-----PKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~~~-----p~~-D~i~~~ 255 (353)
+.++.+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++. .|+.+.+ +.+ |+|+-.
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 667789999995 5788888999887 468877775 55555555442112222 2222111 223 777653
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEEEe
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIVVE 287 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e 287 (353)
- . ...+....+.|+|+|+++.+-
T Consensus 105 ~-----g----~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 105 L-----A----NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp C-----H----HHHHHHHHHHEEEEEEEEECC
T ss_pred c-----c----HHHHHHHHhccCCCCEEEEEe
Confidence 2 1 245888889999999999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.36 E-value=1.4 Score=32.99 Aligned_cols=93 Identities=12% Similarity=-0.040 Sum_probs=59.1
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCC--CC-----CCCC-cEEEeccc
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMF--QS-----VPKG-DAIFLKWI 257 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~--~~-----~p~~-D~i~~~~~ 257 (353)
..+..+||-+|+|. |..+..+++.....++++.|. ++-++.+++..-..++..+-. +. -+.+ |+++-.-.
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 45678899999985 455678888777778898998 555666655433334332211 10 1223 66554322
Q ss_pred cccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 258 LHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 258 Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
. ...+....+.|+|+|+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEEEEEEEECCC
T ss_pred -----c---chHHHHHHHHHhCCCEEEEEeC
Confidence 1 2468888999999999998763
|
| >d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MerB N-terminal domain-like domain: Alkylmercury lyase MerB species: Escherichia coli [TaxId: 562]
Probab=83.10 E-value=0.27 Score=29.76 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=26.8
Q ss_pred hhhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHh
Q 018576 37 IFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLA 78 (353)
Q Consensus 37 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~ 78 (353)
++..|+++ .|+|+++||..+|. ....++..|..+.
T Consensus 7 LLr~LA~G---~PVs~~~LA~alg~----~~~eV~~aL~~~p 41 (60)
T d1s6la1 7 LLRELAKG---RPVSRTTLAGILDW----PAERVAAVLEQAT 41 (60)
T ss_dssp HHHHHHTT---CCBCHHHHHHHHTC----CHHHHHHHHTTCC
T ss_pred HHHHHhCC---CCcCHHHHHHHhCC----CHHHHHHHHHhCC
Confidence 56778886 69999999999999 6666665555544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=82.79 E-value=0.99 Score=34.07 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=50.5
Q ss_pred CeEEEEcCCchHHHH--HHHHHCCCCeEEEecc-hHHHhhCCCC-------CCeeEE------eCCCCCCCCCCcEEEec
Q 018576 192 KQLVDVGGNLGVTLQ--AITSKYPYIKGINFDQ-PHVIEHAPLH-------PHIEHV------AGDMFQSVPKGDAIFLK 255 (353)
Q Consensus 192 ~~vLDvG~G~G~~~~--~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~rv~~~------~~d~~~~~p~~D~i~~~ 255 (353)
.+|-=||+|.-+.+. .|.+. +.+++++|. ++-++..++. +..... ..|..+.+++.|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence 467778998654433 33333 568999998 4444443321 111111 11111123344888875
Q ss_pred cccccCCchHHHHHHHHHHHhCCCCCEEEE
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPEDGKVIV 285 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i 285 (353)
- +......+++++...|+++..+++
T Consensus 80 v-----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 V-----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp S-----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred E-----chhHHHHHHHHhhhccCCCCEEEE
Confidence 2 345567899999999999886553
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.72 E-value=2.8 Score=31.56 Aligned_cols=95 Identities=15% Similarity=0.036 Sum_probs=57.8
Q ss_pred cCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEe---CCCCC-C-----CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVA---GDMFQ-S-----VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~-~-----~p~~-D~i~~~ 255 (353)
.+++.+||=+|+| .|..+..+++.+...+++++|. ++-++.+++..--.++. .|... . .+.+ |+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 6677899999998 4567778888877789999998 67777777642222222 22111 0 1233 765544
Q ss_pred cccccCCchHHHHHHHHHHHhCC-CCCEEEEEeeec
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVP-EDGKVIVVELML 290 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~-pgG~l~i~e~~~ 290 (353)
-. . ...+......+. ++|+++++-...
T Consensus 107 ~g-----~---~~~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 107 IG-----H---LETMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp SC-----C---HHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred CC-----c---hHHHHHHHHHhhcCCeEEEEEEccc
Confidence 22 1 233444445554 559998876543
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=82.39 E-value=0.33 Score=30.63 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=36.5
Q ss_pred hhhhhhcCCCCCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 38 FQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 38 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
.+.|..+ ...|+-+||+.+|+ ...-+.|.|-.|...|.|.++
T Consensus 16 l~~L~~~---~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~ 57 (70)
T d1sfua_ 16 VLSLNTN---DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 57 (70)
T ss_dssp HHTSCTT---CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCC---CCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence 3455554 58999999999999 889999999999999999987
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=80.54 E-value=2.1 Score=31.86 Aligned_cols=96 Identities=18% Similarity=0.059 Sum_probs=57.4
Q ss_pred HhccccCCCCeEEEEcCC-chHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEEeCCCCC-C--CCCC-cEEEecc
Q 018576 183 ESYKGFANIKQLVDVGGN-LGVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHVAGDMFQ-S--VPKG-DAIFLKW 256 (353)
Q Consensus 183 ~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~--~p~~-D~i~~~~ 256 (353)
+... ..++.+||=+|+| .|.++..+++.. +.+.+++|. ++-.+.+++..--.++...-.. . .-.+ |+++-.-
T Consensus 24 ~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~ 101 (168)
T d1uufa2 24 RHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 101 (168)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred HHhC-CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee
Confidence 3344 6778899999987 577888899887 567777876 4444444433211222211111 1 1123 7765442
Q ss_pred ccccCCchHHHHHHHHHHHhCCCCCEEEEEee
Q 018576 257 ILHDWDDEHCLKLLKNCYKSVPEDGKVIVVEL 288 (353)
Q Consensus 257 ~Lh~~~~~~~~~~L~~~~~~L~pgG~l~i~e~ 288 (353)
. . ...+....+.++|+|+++++-.
T Consensus 102 g-----~---~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 102 A-----A---PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp S-----S---CCCHHHHHTTEEEEEEEEECCC
T ss_pred e-----c---chhHHHHHHHHhcCCEEEEecc
Confidence 1 1 1236667789999999999754
|
| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: CO-sensing protein CooA, C-terminal domain species: Rhodospirillum rubrum [TaxId: 1085]
Probab=80.44 E-value=0.7 Score=30.04 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=32.4
Q ss_pred CCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeee
Q 018576 49 KLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECS 86 (353)
Q Consensus 49 ~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (353)
|+|-++||..+|+ ...-+.|.|+.|...|+++..
T Consensus 30 ~~t~~eiA~~lG~----sretvsr~l~~l~~~g~I~~~ 63 (80)
T d1ft9a1 30 DFTVEEIANLIGS----SRQTTSTALNSLIKEGYISRQ 63 (80)
T ss_dssp CCCHHHHHHHHCS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEC
Confidence 7899999999999 999999999999999999974
|
| >d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PH0730 N-terminal domain-like domain: Hypothetical protein PH0730 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.43 E-value=0.36 Score=30.51 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCCCHHHHHHhCCCCCCCCcCcHHHHHHHHhcccceeeeccCCCCccceeccccccccc
Q 018576 48 AKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDGSGARRRYSLNSVSKYYV 106 (353)
Q Consensus 48 ~~~t~~ela~~~~~~~~~~~~~l~r~L~~L~~~g~l~~~~~~g~~~~~y~~t~~~~~l~ 106 (353)
.|+....||+.+++ .++-++-.++.|...|+++.. ...-.+|+.|..++
T Consensus 16 qPiGRr~La~~L~l----~Er~vRte~~~Lk~~gLI~~~------~~Gm~lTe~G~~~l 64 (69)
T d2p8ta1 16 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK------QRGHFLTLKGKEIR 64 (69)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC--------CEEECHHHHHHH
T ss_pred CCccHHHHHHHcCC----cHHHHHHHHHHHHHCCCeeee------CCCCEECHhHHHHH
Confidence 38999999999999 999999999999999999986 34467787776544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.17 E-value=8.1 Score=28.67 Aligned_cols=96 Identities=15% Similarity=-0.021 Sum_probs=60.2
Q ss_pred cCCCCeEEEEcCCc-hHHHHHHHHHCCCCeEEEecc-hHHHhhCCCCCCeeEE---eCCCCC-C-----CCCC-cEEEec
Q 018576 188 FANIKQLVDVGGNL-GVTLQAITSKYPYIKGINFDQ-PHVIEHAPLHPHIEHV---AGDMFQ-S-----VPKG-DAIFLK 255 (353)
Q Consensus 188 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~---~~d~~~-~-----~p~~-D~i~~~ 255 (353)
..++.+||=+|||. |..+..+++.....++++.|. ++-++.+++..-..++ ..|... . .+.+ |+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 66778999999984 556667888777778999998 5567777665333333 223211 0 1223 766543
Q ss_pred cccccCCchHHHHHHHHHHHhCCC-CCEEEEEeeecC
Q 018576 256 WILHDWDDEHCLKLLKNCYKSVPE-DGKVIVVELMLP 291 (353)
Q Consensus 256 ~~Lh~~~~~~~~~~L~~~~~~L~p-gG~l~i~e~~~~ 291 (353)
-. . ...+......+++ +|+++++-...+
T Consensus 105 ~g-----~---~~~~~~~~~~~~~~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 105 AG-----R---IETMMNALQSTYCGSGVTVVLGLASP 133 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred CC-----C---chHHHHHHHHHHHhcCceEEEEEecC
Confidence 21 1 2456667777765 599998776443
|