Citrus Sinensis ID: 018577

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MKLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Secondary Structure (PSIPRED)
cHHHHHHHcccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccEEEEccccHHHHHHHcccHHHHHHHHcccccccccEEEEccHHHHHHHHHHHHHcccccEEcccEEEEEEccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHcccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccHHcccEEEEEccccccHHHHHHHHHHHHcccEEEEEccccEEEccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEcccHHHHHHHcccHHHHHHHHcccccccccEEEcccHHHHHHHHHHHHHccccEEEEccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
mkllkratqyttttfysptsrgyfkkfsigskscffstsseepeLMNFMNYLDSLKnfeksgvpkgagtdsddgfdlGRMNRLMdrlgnphskfktvhiagtkgkgsTAAFLSSILRaegysvgcytsphIKTIRERMnvgrlnrpvSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAglggardatniisssGLAASVITTIGEEHTAALGGSLETIAMAKSGiikygrpvvsayDAGIRATINglsmfndrpcqscdIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Flexible Loop (DISEMBL)
mkllkratqyttttfysptsrgyfKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSgvpkgagtdsddgfDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Low Complexity Region (SEG)
MKLLKRAtqyttttfysptsRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNaltatcaalclRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Disordered region (IsUnstruct)
********QYTTTTFYSPTSRGYFKKFSIGSKSCFFS********MNFMNYLD****************************************FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL***
Disordered Region (DISOPRED)
********QYTTTTFYS*****************************NFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Disordered Region (DISEMBL)
MKLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Disordered Region (DISPRO)
*KLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLLKRATQYTTTTFYSPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q05865	430	Folylpolyglutamate syntha	yes	no	0.691	0.567	0.381	4e-38
A6H751	585	Folylpolyglutamate syntha	yes	no	0.623	0.376	0.355	2e-30
Q924L9	587	Folylpolyglutamate syntha	yes	no	0.626	0.376	0.343	4e-28
Q05932	587	Folylpolyglutamate syntha	yes	no	0.600	0.361	0.344	2e-27
P15925	428	Folylpolyglutamate syntha	yes	no	0.546	0.450	0.344	7e-27
P48760	587	Folylpolyglutamate syntha	yes	no	0.614	0.369	0.340	8e-27
Q12676	427	Folylpolyglutamate syntha	yes	no	0.484	0.400	0.361	2e-26
Q8W035	492	Folylpolyglutamate syntha	no	no	0.600	0.430	0.356	5e-26
F4J2K2	625	Folylpolyglutamate syntha	no	no	0.609	0.344	0.336	1e-25
F4K2A1	571	Folylpolyglutamate syntha	no	no	0.623	0.385	0.340	3e-24

>sp|Q05865|FOLC_BACSU Folylpolyglutamate synthase OS=Bacillus subtilis (strain 168) GN=folC PE=3 SV=2

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 144/262 (54%), Gaps = 18/262 (6%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           LGRM +LM RLG+P  K +  H+AGT GKGST AF+ S+L+  GY+VG +TSP+I T  E
Sbjct: 24  LGRMKQLMARLGHPEKKIRAFHVAGTNGKGSTVAFIRSMLQEAGYTVGTFTSPYIITFNE 83

Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNH-VDI 195
           R++V  +  P+S +    L +++K  ++   + E G  T FE++TA AF  FA+ H VD 
Sbjct: 84  RISVNGI--PISDEEWTALVNQMKPHVEALDQTEYGQPTEFEIMTACAFLYFAEFHKVDF 141

Query: 196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV 255
            + E GLGG  D+TN++       +VIT+IG +H   LG ++E IA  K+GIIK G P+V
Sbjct: 142 VIFETGLGGRFDSTNVVEP---LLTVITSIGHDHMNILGNTIEEIAGEKAGIIKEGIPIV 198

Query: 256 SAY-DAGIRATINGLSMFNDRPCQS----CDII----VQAERDLKLSIE---LLDVKLCM 303
           +A         I   +  +  P QS    C I     + A        E     D++  +
Sbjct: 199 TAVTQPEALQVIRHEAERHAAPFQSLHDACVIFNEEALPAGEQFSFKTEEKCYEDIRTSL 258

Query: 304 IGNHQLHNALTATCAALCLRDQ 325
           IG HQ  NA  +  AA  L  +
Sbjct: 259 IGTHQRQNAALSILAAEWLNKE 280

Conversion of folates to polyglutamate derivatives. It prefers 5,10-methylenetetrahydrofolate, rather than 10-formyltetrahydrofolate as folate substrate.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 7

>sp|A6H751|FOLC_BOVIN Folylpolyglutamate synthase, mitochondrial OS=Bos taurus GN=FPGS PE=2 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 25/245 (10%)

Query: 93  KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKAL 152
           +   +HI GTKGKGST AF   ILR+ G   G ++SPH+  +RER+ +    +P+S++  
Sbjct: 92  QLNIIHITGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRIN--GQPISSELF 149

Query: 153 NCLFHKIKGVLDEAIRLENGCIT---HFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
              F ++   L+E  + ++ C++   +F  LT MAF +F Q  VD+AV+E G+GGA D T
Sbjct: 150 TKHFWRLYHRLEET-KDDSSCVSMPGYFRFLTLMAFHVFLQEKVDLAVLEVGIGGAYDCT 208

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGL 269
           NII    +    IT++G +HT  LG ++E IA  K GI K G P  +            L
Sbjct: 209 NIIRKPVVCG--ITSLGIDHTGLLGDTMEKIAWQKGGIFKSGVPAFTVLQPD-----EPL 261

Query: 270 SMFNDRPCQ-SCDIIVQAERDLKLSIELLD-----VKLCMIGNHQLHNALTATCAALCLR 323
           ++  DR  Q SC +       L   ++ L+     + L + G HQ  NA  A   A C  
Sbjct: 262 AVLRDRAQQISCPLY------LCPPLQALEEGGPPLTLGLEGEHQRSNAALALQVARCWL 315

Query: 324 DQGGY 328
            Q GY
Sbjct: 316 QQKGY 320

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q924L9|FOLC_CRIGR Folylpolyglutamate synthase, mitochondrial OS=Cricetulus griseus GN=FPGS PE=2 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 18/239 (7%)

Query: 92  SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA-- 149
           ++   +H+ GTKGKGST AF   ILR+ G   G ++SPH+  +RER+ +    +P+S   
Sbjct: 94  NQLNIIHVTGTKGKGSTCAFTERILRSYGLKTGFFSSPHLVQVRERIRIN--GKPISPEL 151

Query: 150 --KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD 207
             K    L+H+++   D++         +F  LT MAF +F Q  VD+AV+E G+GGA D
Sbjct: 152 FTKHFWRLYHQLEEFKDDS---HVAMPAYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYD 208

Query: 208 ATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATIN 267
            TNII    +    ++++G +HT+ LG ++E IA  K GI K G P  +           
Sbjct: 209 CTNIIRKPVVCG--VSSLGMDHTSLLGDTVEKIAWQKGGIFKPGVPAFTVLQPE-----G 261

Query: 268 GLSMFNDRPCQ-SCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQ 325
            L++  DR  Q SC + +    +  L    L + L + G HQ  NA  A   A C  +Q
Sbjct: 262 PLAVLRDRAQQTSCPLYLCPPLE-ALEDGGLPLTLGLEGEHQRSNAALALQLAHCWLEQ 319

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis.

Cricetulus griseus (taxid: 10029)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q05932|FOLC_HUMAN Folylpolyglutamate synthase, mitochondrial OS=Homo sapiens GN=FPGS PE=1 SV=3

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 26/238 (10%)

Query: 93  KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKAL 152
           +   +H+ GTKGKGST AF   ILR+ G   G ++SPH+  +RER+ +    +P+S +  
Sbjct: 95  RLNIIHVTGTKGKGSTCAFTECILRSYGLKTGFFSSPHLVQVRERIRIN--GQPISPELF 152

Query: 153 NCLFHKIKGVLDEAIRLENGCIT---HFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
              F ++   L+E    +  C++   +F  LT MAF +F Q  VD+AV+E G+GGA D T
Sbjct: 153 TKYFWRLYHRLEETK--DGSCVSMPPYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAYDCT 210

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGL 269
           NII    +    ++++G +HT+ LG ++E IA  K GI K G P  +            L
Sbjct: 211 NIIRKPVVCG--VSSLGIDHTSLLGDTVEKIAWQKGGIFKQGVPAFTVLQPE-----GPL 263

Query: 270 SMFNDRPCQ-SCDIIVQAERDLKLSIELLD-----VKLCMIGNHQLHNALTATCAALC 321
           ++  DR  Q SC +       L   +E L+     + L + G HQ  NA  A   A C
Sbjct: 264 AVLRDRAQQISCPLY------LCPMLEALEEGGPPLTLGLEGEHQRSNAALALQLAHC 315

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Unsubstitued reduced folates are the preferred substrates. Metabolizes methotrexate (MTX) to polyglutamates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|P15925|FOLC_LACCA Folylpolyglutamate synthase OS=Lactobacillus casei GN=fgs PE=1 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 22/215 (10%)

Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47

Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105

Query: 163 LDEAIRLE-NGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASV 221
           L+   + + +  +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV
Sbjct: 106 LERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVSV 162

Query: 222 ITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
           +T +  +H   LG ++  IA  K+GIIK G PVV+
Sbjct: 163 LTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT 197

Conversion of folates to polyglutamate derivatives. It prefers 5,10-methylenetetrahydrofolate, rather than 10-formyltetrahydrofolate as folate substrate.

Lactobacillus casei (taxid: 1582)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|P48760|FOLC_MOUSE Folylpolyglutamate synthase, mitochondrial OS=Mus musculus GN=Fpgs PE=1 SV=3

 Score =  121 bits (304), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 18/235 (7%)

Query: 92  SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA-- 149
           ++   +H+ GTKGKGST AF   ILR  G   G ++SPH+  +RER+ +    +P+S   
Sbjct: 94  NRLNIIHVTGTKGKGSTCAFTERILRNYGLKTGFFSSPHMVQVRERIRIN--GKPISPEL 151

Query: 150 --KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD 207
             K   CL+++++   D++        ++F  LT MAF +F Q  VD+AV+E G+GGA D
Sbjct: 152 FTKHFWCLYNQLEEFKDDS---HVSMPSYFRFLTLMAFHVFLQEKVDLAVVEVGIGGAFD 208

Query: 208 ATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATIN 267
            TNII    +    ++++G +HT+ LG ++E IA  K GI K G P  +           
Sbjct: 209 CTNIIRKPVVCG--VSSLGIDHTSLLGDTVEKIAWQKGGIFKPGVPAFTVVQPE-----G 261

Query: 268 GLSMFNDRPCQ-SCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALC 321
            L++  DR  Q  C + +    +  L    L + L + G HQ  NA  A   A C
Sbjct: 262 PLAVLRDRAQQIGCPLYLCPPLE-ALEEVGLPLSLGLEGAHQRSNAALALQLAHC 315

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Dihydrofolate, tetrahydrofolate, 5,10-methylenetetrahydrofolate, 10-formyltetrahydrofolate and 5-formyltetrahydrofolate are the best substrates. Folic acid and 5-methyltetrahydrofolate can also act as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q12676|FOLD_YEAST Folylpolyglutamate synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FOL3 PE=1 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 99/177 (55%), Gaps = 6/177 (3%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R+ +L++ LGNP +  + +HIAGT GKGS   +LSS+L+ + Y +G +T+PH+  + +
Sbjct: 7   LSRITKLLEHLGNPQNSLRVLHIAGTNGKGSVCTYLSSVLQQKSYQIGKFTTPHLVHVTD 66

Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196
            + +   N+P+  +     +  I+  L+   +  +   T FE+LT  AF  F        
Sbjct: 67  SITIN--NKPIPLER----YQNIRLQLEALNKSHSLKCTEFELLTCTAFKYFYDVQCQWC 120

Query: 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP 253
           VIE GLGG  DATN+I  +  A   IT I  +H + LG +L  I+  K+GII  G P
Sbjct: 121 VIEVGLGGRLDATNVIPGANKACCGITKISLDHESFLGNTLSEISKEKAGIITEGVP 177

Conversion of folates to polyglutamate derivatives.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|Q8W035|FPGS3_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS3 PE=1 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 124/241 (51%), Gaps = 29/241 (12%)

Query: 87  LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE--RMNVGRLN 144
           L +  S+ K +H+AGTKGKGST  F  SILR  G   G +TSPH+  +RE  R+N   ++
Sbjct: 51  LEDAVSQMKIIHVAGTKGKGSTCTFAESILRCYGLRTGLFTSPHLIDVRERFRLNGIEIS 110

Query: 145 RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG 204
           +        C FHK+K    E    E    T+F  L  +AF +F    VD+ ++E GLGG
Sbjct: 111 QEKFVNYFWCCFHKLK----EKTSNEVPMPTYFCFLALLAFKIFTTEQVDVVILEVGLGG 166

Query: 205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP--VVSAYDAGI 262
             DATN+I    +    I+++G +H   LG +L  IA  K+GI K G P   V+  D  +
Sbjct: 167 RFDATNVIQKPVVCG--ISSLGYDHMEILGYTLAEIAAEKAGIFKSGVPAFTVAQPDEAM 224

Query: 263 RATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLD--VKLCMIGNHQLHNALTATCAAL 320
           R       + N++         + E +L++ +E LD   +L + G HQ  NA  A   AL
Sbjct: 225 R-------VLNEKAS-------KLEVNLQV-VEPLDSSQRLGLQGEHQYLNAGLAV--AL 267

Query: 321 C 321
           C
Sbjct: 268 C 268

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|F4J2K2|FPGS2_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS2 PE=1 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 125/244 (51%), Gaps = 29/244 (11%)

Query: 93  KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKAL 152
           + K +H+AGTKGKGST  F  +ILR  G+  G +TSPH+  +RER  +  L+  +S +  
Sbjct: 130 ELKVIHVAGTKGKGSTCVFSEAILRNCGFRTGMFTSPHLIDVRERFRIDGLD--ISEEKF 187

Query: 153 NCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNII 212
              F +   +L E           F+ LT +AF +F    VD+AVIE GLGG  D+TN+I
Sbjct: 188 LQYFWECWKLLKEKAVDGLTMPPLFQFLTVLAFKIFVCEKVDVAVIEVGLGGKLDSTNVI 247

Query: 213 SSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMF 272
               +    I ++G +H   LG +L  IA  K+GI K   P + A+      T+  LS  
Sbjct: 248 QKPVVCG--IASLGMDHMDILGNTLADIAFHKAGIFK---PQIPAF------TVPQLS-- 294

Query: 273 NDRPCQSCDIIVQAERDLKLSIEL--------LD-VKLCMIGNHQLHNALTATCAALCLR 323
                ++ D++ +   +L++ +E+        LD V L + G+HQL NA  A   + C  
Sbjct: 295 -----EAMDVLQKTANNLEVPLEVVAPLEPKKLDGVTLGLSGDHQLVNAGLAVSLSRCWL 349

Query: 324 DQGG 327
            + G
Sbjct: 350 QRTG 353

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

>sp|F4K2A1|FPGS1_ARATH Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS1 PE=1 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 93  KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKAL 152
           K   +H+AGTKGKGST  F  SI+R  G+  G +TSPH+  +RER  +  ++  +S +  
Sbjct: 111 KMNVIHVAGTKGKGSTCTFTESIIRNYGFRTGLFTSPHLIDVRERFRLDGVD--ISEEKF 168

Query: 153 NCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNII 212
              F      L E    E    T+F  L  +AF +FA   VD A++E GLGG  DATN +
Sbjct: 169 LGYFWWCYNRLKERTNEEIPMPTYFRFLALLAFKIFAAEEVDAAILEVGLGGKFDATNAV 228

Query: 213 SSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP--VVSAYDAGIRATINGLS 270
               +    I+++G +H   LG +L  IA  K+GI K G P   V   D  +R       
Sbjct: 229 QKPVVCG--ISSLGYDHMEILGDTLGKIAGEKAGIFKLGVPAFTVPQPDEAMRVLEE--- 283

Query: 271 MFNDRPCQSCDIIVQAERDLKLSIELLD-VKLCMIGNHQLHNA-LTATCAALCLRDQG 326
                  ++ +  V  E    L+  LL   KL + G HQ  NA L  + A++ L+  G
Sbjct: 284 -------KASETEVNLEVVQPLTARLLSGQKLGLDGEHQYVNAGLAVSLASIWLQQIG 334

Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis. Required for postembryonic root development. Generates polyglutamylated folate cofactors to support C1 metabolism required for meristem maintenance and cell expansion during postembryonic root development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
359490535	536	PREDICTED: folylpolyglutamate synthase-l	0.844	0.555	0.669	1e-120
147838709	637	hypothetical protein VITISV_018995 [Viti	0.844	0.467	0.666	1e-119
224116906	478	folylpolyglutamate synthase [Populus tri	0.827	0.610	0.684	1e-118
255545058	552	tetrahydrofolylpolyglutamate synthase, p	0.827	0.528	0.697	1e-116
356533471	536	PREDICTED: folylpolyglutamate synthase-l	0.818	0.539	0.662	1e-113
356551520	536	PREDICTED: LOW QUALITY PROTEIN: folylpol	0.818	0.539	0.649	1e-110
325516272	485	folylpolyglutamate synthase [Solanum pen	0.832	0.606	0.633	1e-109
449463470	548	PREDICTED: folylpolyglutamate synthase-l	0.869	0.560	0.607	1e-107
17976703	530	dihydrofolate synthetase [Arabidopsis th	0.895	0.596	0.569	1e-103
30693806	530	folylpolyglutamate synthase [Arabidopsis	0.895	0.596	0.569	1e-103

>gi|359490535|ref|XP_002267695.2| PREDICTED: folylpolyglutamate synthase-like [Vitis vinifera] gi|302143688|emb|CBI22549.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/327 (66%), Positives = 254/327 (77%), Gaps = 29/327 (8%)

Query: 25  KKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLM 84
           K+  +G K  F    S EPEL +F+NYLD+LKN+EK GVPK AGTDS  GFDLGRMNRLM
Sbjct: 10  KRTLLGFKRSF----STEPELKDFLNYLDNLKNYEKCGVPKDAGTDSSHGFDLGRMNRLM 65

Query: 85  DRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN 144
           DRLGNP + FK VHIAGTKGKGSTAAFL++ILR EGY+VGCYTSPH++TIRER+++G+L 
Sbjct: 66  DRLGNPETGFKAVHIAGTKGKGSTAAFLANILRTEGYAVGCYTSPHVRTIRERISLGKLG 125

Query: 145 RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG 204
            PVSAKALNCLFH+IK +LDEA+ LENG ++HFE+LTAMAF LFAQ +VD+AVIEAGLGG
Sbjct: 126 EPVSAKALNCLFHRIKPILDEAVALENGRLSHFEILTAMAFKLFAQENVDVAVIEAGLGG 185

Query: 205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG------------- 251
           ARDATNIISSSGLAA+VITTIGEEH AALGGSLE+IAMAKSGIIK G             
Sbjct: 186 ARDATNIISSSGLAAAVITTIGEEHLAALGGSLESIAMAKSGIIKQGCPLVLGGPFLPHI 245

Query: 252 ------------RPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDV 299
                        PVVSA   G R+ + G+S  N +P QSCDI+++ ERD KL IEL DV
Sbjct: 246 EHIFLDKASSMCSPVVSASGPGNRSAVKGVSKSNGKPFQSCDIVIEVERDFKLFIELFDV 305

Query: 300 KLCMIGNHQLHNALTATCAALCLRDQG 326
           KL M+G HQL NA TATC ALCLRD+G
Sbjct: 306 KLQMLGIHQLQNAATATCVALCLRDKG 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838709|emb|CAN76202.1| hypothetical protein VITISV_018995 [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/327 (66%), Positives = 253/327 (77%), Gaps = 29/327 (8%)

Query: 25  KKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLM 84
           K+  +G K  F    S EPEL +F+NYLD+LKN+EK GVPK AGTDS  GFDLGRMNRLM
Sbjct: 10  KRTLLGFKRSF----STEPELKDFLNYLDNLKNYEKCGVPKDAGTDSSHGFDLGRMNRLM 65

Query: 85  DRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN 144
           D LGNP + FK VHIAGTKGKGSTAAFL++ILR EGY+VGCYTSPH++TIRER+++G+L 
Sbjct: 66  DXLGNPZTGFKAVHIAGTKGKGSTAAFLANILRTEGYAVGCYTSPHVRTIRERISLGKLG 125

Query: 145 RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGG 204
            PVSAKALNCLFH+IK +LDEA+ LENG ++HFE+LTAMAF LFAQ +VD+AVIEAGLGG
Sbjct: 126 EPVSAKALNCLFHRIKPILDEAVALENGRLSHFEILTAMAFKLFAQENVDVAVIEAGLGG 185

Query: 205 ARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG------------- 251
           ARDATNIISSSGLAA+VITTIGEEH AALGGSLE+IAMAKSGIIK G             
Sbjct: 186 ARDATNIISSSGLAAAVITTIGEEHLAALGGSLESIAMAKSGIIKQGCPLVLGGPFLPHI 245

Query: 252 ------------RPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDV 299
                        PVVSA   G R+ + G+S  N +P QSCDI+++ ERD KL IEL DV
Sbjct: 246 EHIFLDKASSMCSPVVSASGPGNRSAVKGVSKSNGKPFQSCDIVIEVERDFKLFIELFDV 305

Query: 300 KLCMIGNHQLHNALTATCAALCLRDQG 326
           KL M+G HQL NA TATC ALCLRD+G
Sbjct: 306 KLQMLGIHQLQNAATATCVALCLRDKG 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116906|ref|XP_002331843.1| folylpolyglutamate synthase [Populus trichocarpa] gi|222875081|gb|EEF12212.1| folylpolyglutamate synthase [Populus trichocarpa]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 243/317 (76%), Gaps = 25/317 (7%)

Query: 35  FFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKF 94
            FS  +EEPE   F++YLDSLKN+EK GVPK AGTDSDDG DLGRM RLMDRLGNP SKF
Sbjct: 5   LFSKYTEEPEPKEFIDYLDSLKNYEKLGVPKDAGTDSDDGLDLGRMRRLMDRLGNPQSKF 64

Query: 95  KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNC 154
           K VH+AGTKGKGSTAA+LS+ILRAEGYSVGCYTSPH+ +IRER+++G+   PVS K LN 
Sbjct: 65  KAVHVAGTKGKGSTAAYLSNILRAEGYSVGCYTSPHMMSIRERISLGQSGNPVSTKTLNK 124

Query: 155 LFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS 214
           LFH IK  LDEAI+LENG +THFEVLTA AF L A+  VDIAVIEAGLGGARDATNI+ S
Sbjct: 125 LFHMIKPKLDEAIQLENGSLTHFEVLTATAFTLMAEEKVDIAVIEAGLGGARDATNILCS 184

Query: 215 SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR---------------------- 252
           S LAASVITTIGEEH AALGGSLE+IA+AKSGIIKYGR                      
Sbjct: 185 SELAASVITTIGEEHLAALGGSLESIAVAKSGIIKYGRPVVLGGPFLSHVDRILRDKASV 244

Query: 253 ---PVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQL 309
              PVVSA DAGIR +I GL + + RPCQ  DI++Q ERD  L IEL DVKL M+G HQL
Sbjct: 245 MCSPVVSASDAGIRTSIKGLIILDGRPCQLSDIMIQVERDFPLFIELSDVKLRMLGRHQL 304

Query: 310 HNALTATCAALCLRDQG 326
           HNA +A C ALCLRDQG
Sbjct: 305 HNASSAACVALCLRDQG 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545058|ref|XP_002513590.1| tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis] gi|223547498|gb|EEF48993.1| tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/317 (69%), Positives = 253/317 (79%), Gaps = 25/317 (7%)

Query: 35  FFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKF 94
            FST SE  EL +FMNYLDSL NFEKSGVPKGAGTDSD+GFDLGRM RLMDRLGNPHSKF
Sbjct: 32  LFSTLSEAAELNDFMNYLDSLNNFEKSGVPKGAGTDSDEGFDLGRMRRLMDRLGNPHSKF 91

Query: 95  KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNC 154
           K VHIAGTKGKGSTAAFLS+ILRA+GYSVGCYTSPHI TIRERM++G+L +PVS  ALN 
Sbjct: 92  KAVHIAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHIVTIRERMSIGKLGKPVSPMALNS 151

Query: 155 LFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS 214
            FH+I+  LDEAI+LENGC++HFEVLTA+AF+LFAQ +VDIA+IEAGLGGARDATNI+ S
Sbjct: 152 HFHQIRQKLDEAIQLENGCLSHFEVLTAIAFSLFAQENVDIAIIEAGLGGARDATNILCS 211

Query: 215 SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR---------------------- 252
           S LA S+ITTIGEEH  ALGGSLE+IAMAK+GIIK GR                      
Sbjct: 212 SQLATSIITTIGEEHLMALGGSLESIAMAKAGIIKRGRPLILGGPFLPDIERILRDKASL 271

Query: 253 ---PVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQL 309
              PVVSA D+GIR TI GLSMF+ R CQ CDI ++ ++ L L IEL D+++ M+G+HQL
Sbjct: 272 MLAPVVSASDSGIRTTIKGLSMFDGRHCQLCDIKIRVKKALNLFIELSDLEMRMLGSHQL 331

Query: 310 HNALTATCAALCLRDQG 326
            NA TA CAALCLRDQG
Sbjct: 332 QNAATAACAALCLRDQG 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533471|ref|XP_003535287.1| PREDICTED: folylpolyglutamate synthase-like [Glycine max]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/314 (66%), Positives = 240/314 (76%), Gaps = 25/314 (7%)

Query: 38  TSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTV 97
           T S   E+ +F++YLDSLKN+EKSGVPKGAGTDS DGFDLGRM RLM+R GNPHSKFK V
Sbjct: 19  TLSSHSEMKDFLDYLDSLKNYEKSGVPKGAGTDSSDGFDLGRMRRLMERFGNPHSKFKAV 78

Query: 98  HIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157
           HIAGTKGKGSTAAF+S+ILR EGYSVGCYTSPHI TIRER+ +G+   PVSAK LN LF 
Sbjct: 79  HIAGTKGKGSTAAFVSNILRNEGYSVGCYTSPHILTIRERILLGKSGHPVSAKLLNDLFR 138

Query: 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGL 217
           +IK  +D+A++ ENGCI+HFEV T MAF LFA  +VDIAVIEAGLGGARDATNIISSSGL
Sbjct: 139 RIKPDIDQAMKEENGCISHFEVFTTMAFLLFADENVDIAVIEAGLGGARDATNIISSSGL 198

Query: 218 AASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR------------------------- 252
            ASVITT+GEEH AALGGSLETIAMAK+GIIK  R                         
Sbjct: 199 VASVITTVGEEHLAALGGSLETIAMAKAGIIKQDRPLVLGGPFVPHIERIIRDKAVAMDS 258

Query: 253 PVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNA 312
           PVVSAYD G + T+   S+ N RPCQ CDI++Q  +D+K+S +L DVKL M+G+HQL NA
Sbjct: 259 PVVSAYDTGNKCTVKSFSIRNGRPCQICDILIQVVKDMKMSCKLHDVKLQMLGDHQLQNA 318

Query: 313 LTATCAALCLRDQG 326
            TATC AL LR+ G
Sbjct: 319 ATATCVALVLRNLG 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551520|ref|XP_003544122.1| PREDICTED: LOW QUALITY PROTEIN: folylpolyglutamate synthase-like [Glycine max]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/314 (64%), Positives = 236/314 (75%), Gaps = 25/314 (7%)

Query: 38  TSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTV 97
           T S   E+ +F++YLDSLKN+EKSGVPKGAGTDS DGFDLGRM  LM+R GNPHSKFK V
Sbjct: 19  TLSSHSEMKDFLDYLDSLKNYEKSGVPKGAGTDSSDGFDLGRMRCLMERFGNPHSKFKAV 78

Query: 98  HIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH 157
           HIAGTKGK STAAF+S+ILR EGYSVGCYTSPHI TIRER+ +G+    VSAK LN LF 
Sbjct: 79  HIAGTKGKASTAAFVSNILRNEGYSVGCYTSPHILTIRERILLGKSGHLVSAKLLNDLFR 138

Query: 158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGL 217
           +IK  +D+A++ ENGCI+HFEV T MAF LFA  +VD AVIEAGLGGARDATNIISSSGL
Sbjct: 139 RIKPDIDQAMKEENGCISHFEVFTTMAFLLFADENVDFAVIEAGLGGARDATNIISSSGL 198

Query: 218 AASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR------------------------- 252
            ASVITT+GEEH AALGGSLETIAMAK+GIIK  R                         
Sbjct: 199 VASVITTVGEEHLAALGGSLETIAMAKAGIIKQDRPLVLGGPFVPHIERIIRDKAVAMNS 258

Query: 253 PVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNA 312
           PVVSAYD G + T+   S+ N RPCQ CDI++Q  +D+K+S +L DVKL M+G+HQL NA
Sbjct: 259 PVVSAYDTGNKCTMKSFSILNGRPCQICDILIQVVKDMKMSCKLHDVKLQMLGDHQLQNA 318

Query: 313 LTATCAALCLRDQG 326
            TATC AL LR+ G
Sbjct: 319 ATATCVALVLRNLG 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325516272|gb|ADZ24714.1| folylpolyglutamate synthase [Solanum pennellii]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/319 (63%), Positives = 240/319 (75%), Gaps = 25/319 (7%)

Query: 36  FSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFK 95
           FST  E+PEL   M +LDSLKNFEK+GVPKGAGTDS+DGFDLGRM RLM+ LGNP S+FK
Sbjct: 33  FSTLREDPELDEMMEFLDSLKNFEKAGVPKGAGTDSEDGFDLGRMRRLMELLGNPQSRFK 92

Query: 96  TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL 155
           TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI+TIRER+ +G+   PVSAK LN  
Sbjct: 93  TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIQTIRERITLGKWGEPVSAKVLNHH 152

Query: 156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSS 215
           F+  + V++ A++LENG ++HFEV TA+AF+LFA+ + +IAV+EAGLGGARDATN+IS S
Sbjct: 153 FNTRREVIERAVKLENGYLSHFEVFTAVAFSLFAEENTEIAVVEAGLGGARDATNVISGS 212

Query: 216 GLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR----------------------- 252
            LA S+ITT+GEEH  ALGGSLE+IA+AKSGI+K GR                       
Sbjct: 213 DLAISIITTVGEEHLDALGGSLESIAVAKSGIVKNGRPLVIGGPFVPSIECILRRKASSM 272

Query: 253 --PVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLH 310
             PVVSA D G R+ + G    +  P Q CDI++Q E+D  LSIELL VKL M+G HQL 
Sbjct: 273 SSPVVSASDPGNRSALRGFCEVSGIPRQLCDIVLQIEKDYDLSIELLGVKLRMLGAHQLQ 332

Query: 311 NALTATCAALCLRDQGGYL 329
           NA+TATCAALCL  QG  L
Sbjct: 333 NAVTATCAALCLNKQGWSL 351

Source: Solanum pennellii

Species: Solanum pennellii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463470|ref|XP_004149457.1| PREDICTED: folylpolyglutamate synthase-like [Cucumis sativus] gi|449521387|ref|XP_004167711.1| PREDICTED: folylpolyglutamate synthase-like [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/336 (60%), Positives = 244/336 (72%), Gaps = 29/336 (8%)

Query: 30  GSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGN 89
           GSK CF +T SE+  +  FM YLDSLKN+EK GVP+G+GTDSDDGFDLGRM RLM+RLGN
Sbjct: 35  GSKQCF-ATHSEDQHMTQFMEYLDSLKNYEKLGVPRGSGTDSDDGFDLGRMRRLMERLGN 93

Query: 90  PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA 149
           P S+FK +HIAGTKGKGSTAAFLS+ILR EGYSVGCYTSPHI+TIRER+++GR    VS 
Sbjct: 94  PQSRFKAIHIAGTKGKGSTAAFLSNILRVEGYSVGCYTSPHIETIRERISLGRSGDMVSG 153

Query: 150 KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
           KALN LF + K V D+++ LENG ++HFEVLTAMAF+LFAQ  VD+AVIEAGLGGARDAT
Sbjct: 154 KALNSLFKRNKEVFDQSVELENGHLSHFEVLTAMAFSLFAQEDVDVAVIEAGLGGARDAT 213

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG------------------ 251
           NII SS LAA+VIT+IGEEH AALGGSLE+IA AK+GIIK G                  
Sbjct: 214 NIICSSELAAAVITSIGEEHVAALGGSLESIATAKAGIIKRGCPTILGGPFLPRIEYILR 273

Query: 252 -------RPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI 304
                   PV+SA D G R+TI G+++ N    Q CDI++Q + +    IELLDV L M+
Sbjct: 274 DKALSMSSPVISASDPGNRSTIKGVNLLNGGLSQCCDIVIQIDNEF---IELLDVNLRML 330

Query: 305 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFRE 340
           G HQL NA TATC  L LR+ G  +  +   SG  +
Sbjct: 331 GPHQLQNAATATCVILTLRNLGWRISDASIRSGLEQ 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17976703|emb|CAC80838.1| dihydrofolate synthetase [Arabidopsis thaliana]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 251/346 (72%), Gaps = 30/346 (8%)

Query: 9   QYTTTTFY--SPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKG 66
            ++T ++   SP  R       I +++    +S+E+PEL +F+ +L+SLKN+EKSGVPKG
Sbjct: 7   HFSTNSYIKISPRMRRISAANLISNRNLSTISSTEDPELRDFVGFLESLKNYEKSGVPKG 66

Query: 67  AGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126
           AGTDSDDGFDLGRM RLM RL NPH K+K VH+AGTKGKGST+AFLS+ILRA GYSVGCY
Sbjct: 67  AGTDSDDGFDLGRMKRLMLRLRNPHYKYKVVHVAGTKGKGSTSAFLSNILRAGGYSVGCY 126

Query: 127 TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFA 186
           +SPHI +I+ER++      PVSA  LN LF+ +K +L+++I+ ENG ++HFE+LT +AF+
Sbjct: 127 SSPHILSIKERISCN--GEPVSASTLNDLFYSVKPILEQSIQEENGSLSHFEILTGIAFS 184

Query: 187 LFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
           LF + +VDIAVIEAGLGGARDATN+I SS LAASVITTIGEEH AALGGSLE+IA AKSG
Sbjct: 185 LFEKENVDIAVIEAGLGGARDATNVIESSNLAASVITTIGEEHMAALGGSLESIAEAKSG 244

Query: 247 IIKYGRPVV-------------------------SAYDAGIRATINGLSMFNDRP-CQSC 280
           IIK+GRPVV                          A + G  ++I G+   N    CQSC
Sbjct: 245 IIKHGRPVVLGGPFLPHIEGILRSKAASVSSSVILASNIGSSSSIKGIINKNGIGLCQSC 304

Query: 281 DIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQG 326
           DI++Q E+D +  +EL DV L M+G+HQL NA+TATC +LCLRDQG
Sbjct: 305 DIVIQNEKDDQPIVELSDVNLRMLGHHQLQNAVTATCVSLCLRDQG 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30693806|ref|NP_198963.2| folylpolyglutamate synthase [Arabidopsis thaliana] gi|332007300|gb|AED94683.1| folylpolyglutamate synthase [Arabidopsis thaliana]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/346 (56%), Positives = 251/346 (72%), Gaps = 30/346 (8%)

Query: 9   QYTTTTFY--SPTSRGYFKKFSIGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKG 66
            ++T ++   SP  R       I +++    +S+E+PEL +F+ +L+SLKN+EKSGVPKG
Sbjct: 7   HFSTISYIKISPRMRRISAANLISNRNLSTISSTEDPELRDFVGFLESLKNYEKSGVPKG 66

Query: 67  AGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126
           AGTDSDDGFDLGRM RLM RL NPH K+K VH+AGTKGKGST+AFLS+ILRA GYSVGCY
Sbjct: 67  AGTDSDDGFDLGRMKRLMLRLRNPHYKYKVVHVAGTKGKGSTSAFLSNILRAGGYSVGCY 126

Query: 127 TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFA 186
           +SPHI +I+ER++      PVSA  LN LF+ +K +L+++I+ ENG ++HFE+LT +AF+
Sbjct: 127 SSPHILSIKERISCN--GEPVSASTLNDLFYSVKPILEQSIQEENGSLSHFEILTGIAFS 184

Query: 187 LFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
           LF + +VDIAVIEAGLGGARDATN+I SS LAASVITTIGEEH AALGGSLE+IA AKSG
Sbjct: 185 LFEKENVDIAVIEAGLGGARDATNVIESSNLAASVITTIGEEHMAALGGSLESIAEAKSG 244

Query: 247 IIKYGRPVV-------------------------SAYDAGIRATINGLSMFNDRP-CQSC 280
           IIK+GRPVV                          A + G  ++I G+   N    CQSC
Sbjct: 245 IIKHGRPVVLGGPFLPHIEGILRSKAASVSSSVILASNIGSSSSIKGIINKNGIGLCQSC 304

Query: 281 DIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQG 326
           DI++Q E+D +  +EL DV L M+G+HQL NA+TATC +LCLRDQG
Sbjct: 305 DIVIQNEKDDQPIVELSDVNLRMLGHHQLQNAVTATCVSLCLRDQG 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2177916	530	GLA1 "GLOBULAR ARREST1" [Arabi	0.637	0.424	0.687	1.1e-91
UNIPROTKB|Q3AF86	432	folC "Folylpolyglutamate synth	0.708	0.578	0.362	4e-35
TIGR_CMR|CHY_0335	432	CHY_0335 "folylpolyglutamate s	0.708	0.578	0.362	4e-35
TIGR_CMR|DET_0016	439	DET_0016 "folylpolyglutamate s	0.770	0.619	0.356	2.5e-33
TIGR_CMR|NSE_0715	442	NSE_0715 "folylpolyglutamate s	0.529	0.423	0.417	6.2e-30
TIGR_CMR|BA_4689	433	BA_4689 "FolC bifunctional pro	0.495	0.404	0.392	7.9e-30
TIGR_CMR|APH_0747	429	APH_0747 "folylpolyglutamate s	0.688	0.566	0.360	1e-29
CGD|CAL0000131	430	orf19.6908 [Candida albicans (	0.628	0.516	0.376	4.4e-29
UNIPROTKB|Q59S44	430	CaO19.6908 "Putative uncharact	0.628	0.516	0.376	4.4e-29
TIGR_CMR|GSU_2368	424	GSU_2368 "folC bifunctional pr	0.745	0.620	0.347	5.6e-29

TAIR|locus:2177916 GLA1 "GLOBULAR ARREST1" [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 156/227 (68%), Positives = 193/227 (85%)

Query:    29 IGSKSCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLG 88
             I +++    +S+E+PEL +F+ +L+SLKN+EKSGVPKGAGTDSDDGFDLGRM RLM RL 
Sbjct:    29 ISNRNLSTISSTEDPELRDFVGFLESLKNYEKSGVPKGAGTDSDDGFDLGRMKRLMLRLR 88

Query:    89 NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVS 148
             NPH K+K VH+AGTKGKGST+AFLS+ILRA GYSVGCY+SPHI +I+ER++      PVS
Sbjct:    89 NPHYKYKVVHVAGTKGKGSTSAFLSNILRAGGYSVGCYSSPHILSIKERISCN--GEPVS 146

Query:   149 AKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDA 208
             A  LN LF+ +K +L+++I+ ENG ++HFE+LT +AF+LF + +VDIAVIEAGLGGARDA
Sbjct:   147 ASTLNDLFYSVKPILEQSIQEENGSLSHFEILTGIAFSLFEKENVDIAVIEAGLGGARDA 206

Query:   209 TNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV 255
             TN+I SS LAASVITTIGEEH AALGGSLE+IA AKSGIIK+GRPVV
Sbjct:   207 TNVIESSNLAASVITTIGEEHMAALGGSLESIAEAKSGIIKHGRPVV 253

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=RCA;TAS

GO:0008841 "dihydrofolate synthase activity" evidence=IGI

UNIPROTKB|Q3AF86 folC "Folylpolyglutamate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 101/279 (36%), Positives = 148/279 (53%)

Query:    46 MNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGK 105
             MN+   L+ L N  K G+  G          LGR++ L+ RLGNP  K K VHI GT GK
Sbjct:     1 MNYNEALEFLSNLTKFGINLG----------LGRISELLKRLGNPQEKVKVVHIGGTNGK 50

Query:   106 GSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE 165
             GS  +  +S+L   GY  G +TSPH+    ER  +    + +S + ++ L  +I+ +L  
Sbjct:    51 GSVCSLTASVLAEAGYKTGLFTSPHLSRYTERYKIN--GKEISPERVSQLVTEIRPLL-- 106

Query:   166 AIRLENGCI--THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVIT 223
                +E G    T FEV TAMAF  FA+  VD  V+E GLGG  D+TN++S   + A  IT
Sbjct:   107 LAMVEEGFEHPTEFEVSTAMAFKYFAEEEVDFVVLEVGLGGLIDSTNVVSRPEVVA--IT 164

Query:   224 TIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSC--D 281
              +G +H   LG ++  IA  K+GIIK G PVV+A        I  ++   + P      D
Sbjct:   165 NVGMDHMDYLGNTITEIARVKAGIIKPGVPVVTAATGEALEVIKEVAKEKNSPLLDVNKD 224

Query:   282 IIVQA-ERDLKLSI-ELL-------DVKLCMIGNHQLHN 311
             I++   E+ LK  + +L+       ++K+ ++G HQL N
Sbjct:   225 IVLNLKEKSLKGQVFDLIYRGETYPEIKIRLLGAHQLLN 263

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0046901 "tetrahydrofolylpolyglutamate biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0335 CHY_0335 "folylpolyglutamate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 101/279 (36%), Positives = 148/279 (53%)

Query:    46 MNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGK 105
             MN+   L+ L N  K G+  G          LGR++ L+ RLGNP  K K VHI GT GK
Sbjct:     1 MNYNEALEFLSNLTKFGINLG----------LGRISELLKRLGNPQEKVKVVHIGGTNGK 50

Query:   106 GSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE 165
             GS  +  +S+L   GY  G +TSPH+    ER  +    + +S + ++ L  +I+ +L  
Sbjct:    51 GSVCSLTASVLAEAGYKTGLFTSPHLSRYTERYKIN--GKEISPERVSQLVTEIRPLL-- 106

Query:   166 AIRLENGCI--THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVIT 223
                +E G    T FEV TAMAF  FA+  VD  V+E GLGG  D+TN++S   + A  IT
Sbjct:   107 LAMVEEGFEHPTEFEVSTAMAFKYFAEEEVDFVVLEVGLGGLIDSTNVVSRPEVVA--IT 164

Query:   224 TIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSC--D 281
              +G +H   LG ++  IA  K+GIIK G PVV+A        I  ++   + P      D
Sbjct:   165 NVGMDHMDYLGNTITEIARVKAGIIKPGVPVVTAATGEALEVIKEVAKEKNSPLLDVNKD 224

Query:   282 IIVQA-ERDLKLSI-ELL-------DVKLCMIGNHQLHN 311
             I++   E+ LK  + +L+       ++K+ ++G HQL N
Sbjct:   225 IVLNLKEKSLKGQVFDLIYRGETYPEIKIRLLGAHQLLN 263

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

TIGR_CMR|DET_0016 DET_0016 "folylpolyglutamate synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 104/292 (35%), Positives = 152/292 (52%)

Query:    75 FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTI 134
             +DL R+  L+ RL +PH    +VH+AGTKGKGSTAA ++S++ A GY  G YTSPH+   
Sbjct:    17 YDLRRVVELLLRLHSPHIGIPSVHLAGTKGKGSTAALIASVMSAAGYRTGLYTSPHLLDF 76

Query:   135 RERMNVGRLNRPVSAKA-LNCLFHKIKGVLDEA-IRLENGCITHFEVLTAMAFALFAQNH 192
             RER+   RL+  + +KA L  +   I  +++E   R   G IT FEV+T +AF  F +  
Sbjct:    77 RERI---RLDGKMISKAHLVRIMDYISPMVEEMNARTCLGKITSFEVMTVLAFEFFHRQQ 133

Query:   193 VDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252
                 VIE GLGG  DATN+I+ +    SV+T I  +HT  LG SL  I+  K+GIIK+  
Sbjct:   134 AFFQVIETGLGGRLDATNVITPN---LSVLTPISLDHTEVLGDSLAKISAEKAGIIKHFV 190

Query:   253 PVVSAYD-----AGIRATI--NGLSMFNDRPCQSCDII-VQAE-RDLKLSIELLDVKLCM 303
             PVVSA       A IR      G  +         +++   A+ + LKLS    + +LC+
Sbjct:   191 PVVSAAQRPEAMAVIRERCLKTGSKLIEVTDSYKAELLGYTAQGQSLKLSGRQAEYRLCL 250

Query:   304 --IGNHQLHNXXXXXXXXXXXRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG 353
               +G++Q  N            ++G  +       GF +   W     ++ G
Sbjct:   251 PLLGHYQRQNALTALASLEALVEEGFKISNEDIAEGFGQVR-WPGRFKVIKG 301

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

TIGR_CMR|NSE_0715 NSE_0715 "folylpolyglutamate synthase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 83/199 (41%), Positives = 115/199 (57%)

Query:    64 PKGAGTDSDDGFDLGRMNRLMDRLGNPH-SKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122
             P GA     D   L R+ R++ RLG+PH S    +H+AGT GKGST AFL +IL+A GYS
Sbjct:    17 PLGARPTEID-LKLHRVTRVLKRLGSPHLSVPPVIHVAGTNGKGSTIAFLRAILQASGYS 75

Query:   123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTA 182
             V  YTSPH++   ER+ V R NR +S K L  +   ++      I  +   +T FE  T 
Sbjct:    76 VNVYTSPHLRYFNERI-VLR-NREISDKFLYDVLEDVR------IASQGEKLTFFEGTTL 127

Query:   183 MAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAM 242
              A   F++++ D ++IE G+GG  DATN+       A++IT I  +HT+ LG ++  IA 
Sbjct:   128 AAILAFSRSNADFSLIETGMGGRLDATNVFPKP--IATIITAIDFDHTSYLGATIAQIAY 185

Query:   243 AKSGIIKYGRPVVSAYDAG 261
              K+GIIK G P V A   G
Sbjct:   186 EKAGIIKEGVPCVVARQHG 204

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

TIGR_CMR|BA_4689 BA_4689 "FolC bifunctional protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 71/181 (39%), Positives = 106/181 (58%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L RM  +++ LGNP    K VH+AGT GKGST  ++  +L    Y VG +TSP+I+T  E
Sbjct:    24 LERMRWMLEELGNPERHIKCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNE 83

Query:   137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQ-NHVDI 195
             R++V     P++ + +  L   +K V+++    + G  T FE++T MA   F + N  D+
Sbjct:    84 RISVN--GTPIADEEITELVKMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDV 141

Query:   196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV 255
              + E GLGG  D+TN+I       ++IT IG +H   LG +L  IA  K+GIIK G PV+
Sbjct:   142 VLFETGLGGRFDSTNVIHP---VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVI 198

Query:   256 S 256
             +
Sbjct:   199 T 199

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0008841 "dihydrofolate synthase activity" evidence=ISS

TIGR_CMR|APH_0747 APH_0747 "folylpolyglutamate synthase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 96/266 (36%), Positives = 134/266 (50%)

Query:    73 DGFDLGRMNRLMDRLGNPHSKFK-TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
             +G  L RM  ++ R+GNP +     VH+AGT GKGST AFLSSIL+A G  V  YTSPH+
Sbjct:    16 EGLTLDRMREILCRIGNPENNLPPVVHVAGTNGKGSTIAFLSSILQAAGMRVHVYTSPHL 75

Query:   132 KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA-IRLENGCITHFEVLTAMAFALFAQ 190
                 ER+    LN    +K  +   H+I   L+E   + +   +T FE  TA A   F++
Sbjct:    76 LEFNERIV---LN---GSKISDNHLHEI---LEECRSKCDGMTVTFFEATTAAALLAFSR 126

Query:   191 NHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
              H DI ++E G+GG  DATN++       ++IT+I  +HT  LG ++E IA  K+GI+K 
Sbjct:   127 VHADIVLLEVGMGGRLDATNVVMP---ILTIITSISYDHTCFLGDTVELIAGEKAGILKE 183

Query:   251 GRPVVSA---YDAGIRATINGLSMFNDRPCQSCDIIVQAERDLK----LSIELLDVKL-C 302
             G   V A   YDA  R TI   +  N  P     I     +D       S E  +  L  
Sbjct:   184 GVSCVLAPQKYDAA-RRTIEYHAAVNHAPIYRGGIEWSCTKDADGMVFRSSEEYNFPLPA 242

Query:   303 MIGNHQLHNXXXXXXXXXXXRDQGGY 328
             + G+HQ+ N             + GY
Sbjct:   243 LQGDHQIDNAGTAIAACSVLSGKFGY 268

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

CGD|CAL0000131 orf19.6908 [Candida albicans (taxid:5476)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 93/247 (37%), Positives = 134/247 (54%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L R+ +L+  L NP + +K++HIAGT GKGST A++SS+L       G +TSPHI    +
Sbjct:     7 LQRIAKLLGHLNNPQNAYKSIHIAGTNGKGSTLAYISSVLTEAKIKNGKFTSPHIINYHD 66

Query:   137 RMNVGRLNRPVSA-KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
              +++     P S    +N    KI   L+    LE  C T FE+LTA AF +FA   +++
Sbjct:    67 CISINNQTYPKSKFDRINQQVIKINNDLN----LE--C-TEFEILTATAFKIFALEEIEM 119

Query:   196 AVIEAGLGGARDATNII---------SSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
             A++E G+GG  DATN++         S  G+ A+ IT IG +H   LGG+L  IA  KSG
Sbjct:   120 ALVEVGVGGRLDATNVLIPYGETIGTSKGGVVATAITKIGLDHEKLLGGTLLAIAKEKSG 179

Query:   247 IIKYGRP--VVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI 304
             IIKYG P  V S+ D+ +   I   S     P    + I QA  D +  I+   +K    
Sbjct:   180 IIKYGIPCFVDSSNDSIVLQAIREKSREVSCPLSVVEPI-QANDDNQF-IKYSPLK---- 233

Query:   305 GNHQLHN 311
             G++Q +N
Sbjct:   234 GSYQANN 240

GO:0008841 "dihydrofolate synthase activity" evidence=IGI

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IGI

GO:0005737 "cytoplasm" evidence=IGI

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q59S44 CaO19.6908 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 93/247 (37%), Positives = 134/247 (54%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L R+ +L+  L NP + +K++HIAGT GKGST A++SS+L       G +TSPHI    +
Sbjct:     7 LQRIAKLLGHLNNPQNAYKSIHIAGTNGKGSTLAYISSVLTEAKIKNGKFTSPHIINYHD 66

Query:   137 RMNVGRLNRPVSA-KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
              +++     P S    +N    KI   L+    LE  C T FE+LTA AF +FA   +++
Sbjct:    67 CISINNQTYPKSKFDRINQQVIKINNDLN----LE--C-TEFEILTATAFKIFALEEIEM 119

Query:   196 AVIEAGLGGARDATNII---------SSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
             A++E G+GG  DATN++         S  G+ A+ IT IG +H   LGG+L  IA  KSG
Sbjct:   120 ALVEVGVGGRLDATNVLIPYGETIGTSKGGVVATAITKIGLDHEKLLGGTLLAIAKEKSG 179

Query:   247 IIKYGRP--VVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMI 304
             IIKYG P  V S+ D+ +   I   S     P    + I QA  D +  I+   +K    
Sbjct:   180 IIKYGIPCFVDSSNDSIVLQAIREKSREVSCPLSVVEPI-QANDDNQF-IKYSPLK---- 233

Query:   305 GNHQLHN 311
             G++Q +N
Sbjct:   234 GSYQANN 240

GO:0005737 "cytoplasm" evidence=IGI

GO:0006761 "dihydrofolate biosynthetic process" evidence=IGI

GO:0008841 "dihydrofolate synthase activity" evidence=IGI

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IGI

TIGR_CMR|GSU_2368 GSU_2368 "folC bifunctional protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 99/285 (34%), Positives = 136/285 (47%)

Query:    77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
             L R+  L+ RLGNP  + + VH+AGT GKGSTAAFL+SIL   GY  G +TSPH+    E
Sbjct:    22 LERIATLLQRLGNPQERLRVVHVAGTNGKGSTAAFLASILAEGGYRAGLFTSPHLTRFTE 81

Query:   137 RMNVGRLNRPVSAKALNCLFHKIKG-VLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
             R  +        A A      ++ G VL  A     G  T FEV+TAMA   F +  VD 
Sbjct:    82 RFRINGTEIAEEAAA------RVAGQVLASA---PEGT-TFFEVVTAMALLHFVEEGVDA 131

Query:   196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV 255
             A++EAG+GG  DAT+  +++G+  +VI  +  +H   LG ++  IA  K+G+I+ GRPVV
Sbjct:   132 AILEAGMGGGADATS--AATGIL-TVIAPVALDHCEWLGETIPAIAREKAGLIRAGRPVV 188

Query:   256 -SAYDAGIRATINGLSMFNDRP--CQSCDIIVQ-AERDLK---LSIELLDVKLCMIGNHQ 308
              S   A  R            P  C   D      E  L    LS +L  ++  + G +Q
Sbjct:   189 LSRQPAEARDVFIERGRILGAPLVCFGADFSAAWDESSLAYDGLSRQLAGLRPGIGGRYQ 248

Query:   309 LHNXXXXXXXXXXXRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG 353
             L N            D G  L      +G      W   + L +G
Sbjct:   249 LANAATALAAAEILADNGFRLDSPALRAGIDAAR-WPGRMELFSG 292

GO:0004326 "tetrahydrofolylpolyglutamate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0008841 "dihydrofolate synthase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
PLN02913	510	PLN02913, PLN02913, dihydrofolate synthetase	0.0
COG0285	427	COG0285, FolC, Folylpolyglutamate synthase [Coenzy	3e-74
TIGR01499	398	TIGR01499, folC, folylpolyglutamate synthase/dihyd	2e-72
PLN02881	530	PLN02881, PLN02881, tetrahydrofolylpolyglutamate s	3e-37
PRK10846	416	PRK10846, PRK10846, bifunctional folylpolyglutamat	1e-27
COG0770	451	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy	3e-05
COG0769	475	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt	3e-05
TIGR02068	864	TIGR02068, cya_phycin_syn, cyanophycin synthetase	6e-05
TIGR01143	417	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--	7e-05
PRK14016	727	PRK14016, PRK14016, cyanophycin synthetase; Provis	3e-04
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	0.001

>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase

 Score =  519 bits (1339), Expect = 0.0
 Identities = 224/332 (67%), Positives = 262/332 (78%), Gaps = 29/332 (8%)

Query: 25  KKFSIGSKS----CFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRM 80
           ++ SI +        FS+S+EEPEL +F+ YLDSLKN+EKSGVPK AGTDSDDGFDLGRM
Sbjct: 2   ERISIANLRRNRNLLFSSSTEEPELGDFLRYLDSLKNYEKSGVPKDAGTDSDDGFDLGRM 61

Query: 81  NRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNV 140
            RLMDRLGNPHSKFK VH+AGTKGKGSTAAFLS+ILRA+GYSVGCYTSPH+++IRER++V
Sbjct: 62  RRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISV 121

Query: 141 GRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA 200
           G+L +PVS   LN LFH IK +LDEAI+LENG +THFEVLTA+AF LFAQ +VDIAVIEA
Sbjct: 122 GKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEA 181

Query: 201 GLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV----- 255
           GLGGARDATN+I SSGLAASVITTIGEEH AALGGSLE+IA+AKSGIIK GRPVV     
Sbjct: 182 GLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPF 241

Query: 256 --------------------SAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIE 295
                               SA D G+R++I G+   N +PCQSCDI+++ E+D  L IE
Sbjct: 242 LPHIESILRDKASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIE 301

Query: 296 LLDVKLCMIGNHQLHNALTATCAALCLRDQGG 327
           L DV L M+G+HQL NA+TA CAALCLRDQG 
Sbjct: 302 LSDVNLRMLGSHQLQNAVTAACAALCLRDQGW 333

Length = 510

>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]

 Score =  235 bits (602), Expect = 3e-74
 Identities = 116/295 (39%), Positives = 158/295 (53%), Gaps = 34/295 (11%)

Query: 45  LMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKG 104
           +M+     + L   E+   PK           L R++RL++RLGNP      +H+AGT G
Sbjct: 1   MMSLQELAEWLHYLEQLH-PKP-----GIDLGLERISRLLERLGNPQKSPPVIHVAGTNG 54

Query: 105 KGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN-RPVSAKALNCLFHKIKGVL 163
           KGST AFL SILR  GY VG YTSPH+ +  ER+   R+N  P+S + L   F +++   
Sbjct: 55  KGSTCAFLESILREAGYKVGVYTSPHLLSFNERI---RINGEPISDEELAAAFERVEEAA 111

Query: 164 DEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVIT 223
                L+   +T+FEVLTAMAF  FA+  VD+A++E GLGG  DATN+I       SVIT
Sbjct: 112 GS---LDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNVIEP---DVSVIT 165

Query: 224 TIGEEHTAALGGSLETIAMAKSGIIKYGRPVV-------SAYDAGIRATI--NGLSMFND 274
           +IG +HTA LG +LE+IA  K+GIIK G+P V        A +  I       G  +F  
Sbjct: 166 SIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNV-IAERAEELGAPLFVL 224

Query: 275 RPCQSCDIIVQAER---DLKLSIELLDVKLCMIG-NHQLHNALTATCAALCLRDQ 325
            P    D  V  E      +    LLD+ L ++G +HQ+ NA  A  A   L  +
Sbjct: 225 GP----DFQVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALGKE 275

Length = 427

>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase

 Score =  229 bits (587), Expect = 2e-72
 Identities = 101/264 (38%), Positives = 140/264 (53%), Gaps = 27/264 (10%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L RM +L++ LGNP   +  +H+AGT GKGST AFL SILRA GY VG +TSPH+ +  E
Sbjct: 1   LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNE 60

Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196
           R+ +     P+S + L   F +++ +L +     +   T+FE+LT +AF  FAQ  VD+A
Sbjct: 61  RIRIN--GEPISDEELAQAFEQVRPILKK----LSQQPTYFELLTLLAFLYFAQAQVDVA 114

Query: 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
           V+E GLGG  DATN+I       SVIT+IG +HT  LG +LE IA  K+GIIK G P+V+
Sbjct: 115 VLEVGLGGRLDATNVIEPL---VSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVT 171

Query: 257 AYDAGIRATINGLSMFNDRP--------CQSCDIIVQAERDLKLSIE-----LLDVKLCM 303
                       L++   +             D       +  LS       L  + L +
Sbjct: 172 G-----PQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSL 226

Query: 304 IGNHQLHNALTATCAALCLRDQGG 327
           +G+HQ  NA  A  A   L  Q  
Sbjct: 227 LGDHQAENAALALAALEVLGKQNS 250

This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]. Length = 398

>gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase

 Score =  139 bits (353), Expect = 3e-37
 Identities = 90/298 (30%), Positives = 139/298 (46%), Gaps = 48/298 (16%)

Query: 65  KGAGTDSDDGFDLGRMNRLMDRLG--NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS 122
           +   ++  D FD   +   +  L      S+ K +H+AGTKGKGST  F  SILR  G+ 
Sbjct: 32  RADPSNPGDQFD--LLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFR 89

Query: 123 VGCYTSPHIKTIRERMNVGRLN-RPVS-AKALN---CLFHKIKGVLDEAIRLENGCITHF 177
            G +TSPH+  +RER    RL+   +S  K L      + ++K    E + +      +F
Sbjct: 90  TGLFTSPHLIDVRERF---RLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMP----AYF 142

Query: 178 EVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSL 237
             LT +AF +F+   VD+A++E GLGG  DATN++         IT++G +H   LG +L
Sbjct: 143 RFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKP--VVCGITSLGYDHMEILGDTL 200

Query: 238 ETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIE-- 295
             IA  K+GI K G   V A+                +P ++  ++ +   +L + ++  
Sbjct: 201 GKIAGEKAGIFKPG---VPAFTV-------------PQPDEAMRVLEERASELGVPLQVV 244

Query: 296 -------LLDVKLCMIGNHQLHNALTATCAALC---LRDQGGYLMLSYFLSGFREEHF 343
                  L  +KL + G HQ  NA  A   ALC   L+  G     +   +G   E F
Sbjct: 245 EPLDSYGLSGLKLGLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQF 300

Length = 530

>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

 Score =  111 bits (280), Expect = 1e-27
 Identities = 70/184 (38%), Positives = 99/184 (53%), Gaps = 17/184 (9%)

Query: 76  DLG--RMNRLMDRLG--NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
           DLG  R++++  RL    P     TV  AGT GKG+T   L SIL A GY VG Y+SPH+
Sbjct: 29  DLGLERVSQVAARLDLLKPAPFVFTV--AGTNGKGTTCRTLESILMAAGYRVGVYSSPHL 86

Query: 132 KTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN 191
               ER+ +    + +   A    F +I     EA R +   +T+FE  T  A  LF Q 
Sbjct: 87  VRYTERVRIQ--GQELPESAHTASFAEI-----EAARGDIS-LTYFEYGTLSALWLFKQA 138

Query: 192 HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG 251
            +D+ ++E GLGG  DATNI+ +     +V+T+I  +HT  LG   E+I   K+GI +  
Sbjct: 139 QLDVVILEVGLGGRLDATNIVDAD---VAVVTSIALDHTDWLGPDRESIGREKAGIFRAE 195

Query: 252 RPVV 255
           +P V
Sbjct: 196 KPAV 199

Length = 416

>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 28/150 (18%)

Query: 194 DIAVIEAGLGGARDATNIISSSGLA---ASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           + AV+E G         I   S +A    +VIT IGE H    G S E IA AK+ I+  
Sbjct: 156 EYAVLEMG---MNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAG 211

Query: 251 GRP----VVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAE---RDLKLSIE-------- 295
            RP    +++A +  ++      +   +    S  +    +    ++ L  E        
Sbjct: 212 LRPEGIAILNADNPLLKNW---AAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDI 268

Query: 296 ---LLDVKLCMIGNHQLHNALTATCAALCL 322
                + +L + G H + NAL A   AL L
Sbjct: 269 EGGEAEFELPLPGRHNVTNALAAAALALEL 298

Length = 451

>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 44/253 (17%), Positives = 76/253 (30%), Gaps = 51/253 (20%)

Query: 88  GNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPV 147
           G P  K K + + GT GK +T + L+ IL+  G            T  + ++ G L    
Sbjct: 85  GLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTA-LIG----TEGDELSPGILEPTG 139

Query: 148 SAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD 207
                      +                                  +IAV+E    G   
Sbjct: 140 LTTPEALDLQNL-------------------------LRDLLDRGAEIAVMEVSSHGL-- 172

Query: 208 ATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGI---IKYGRPVVS-------- 256
               +        V T +  +H     G++E    AK+ +   + +    V         
Sbjct: 173 VQGRVEGVTFDVGVFTNLSRDH-LDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGL 231

Query: 257 AYDAGIRATIN---GLSMFNDRP-CQSCDIIVQAER---DLKLSIELLDVKLCMIGNHQL 309
            Y   ++  +           RP      I   +       + S  + + +L + G   +
Sbjct: 232 DYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNV 291

Query: 310 HNALTATCAALCL 322
           +NAL A  AAL L
Sbjct: 292 YNALAAVAAALAL 304

Length = 475

>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 60/260 (23%), Positives = 92/260 (35%), Gaps = 77/260 (29%)

Query: 97  VHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156
           V + GT GK +T   ++ IL+  G  VG  T+  +   +  +  G    P SA+    L 
Sbjct: 482 VSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARR--ILM 539

Query: 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSG 216
                                               VD AV+E   GG       I   G
Sbjct: 540 DP---------------------------------TVDAAVLETARGG-------ILREG 559

Query: 217 LA-----ASVITTIGEEHTAALGG--SLETIAMAKSGIIKY----GRPVVSAYDAGI--- 262
           LA       V+T I  +H   +G   ++E +A  K  +++     G  V++A D  +   
Sbjct: 560 LAFDRCDVGVVTNIAGDHLG-IGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAM 618

Query: 263 ----RATINGLSMFNDRPCQSCDI-------------IVQAERDLKLSIE-LLDVKLCMI 304
               +  I   SM  + P  +  I             IV A    +++I  +  + L M 
Sbjct: 619 AEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMG 678

Query: 305 GN--HQLHNALTATCAALCL 322
           G    Q+ NAL A  AA  L
Sbjct: 679 GRVAFQIENALAAVAAAWAL 698

Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in E. coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. This model makes the designation as cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions [Cellular processes, Biosynthesis of natural products]. Length = 864

>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 22/147 (14%)

Query: 194 DIAVIEAG---LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           D AV+E G    G       I        +VIT IG  H    G SLE IA AK  I++ 
Sbjct: 127 DYAVLEMGASHPGEIAYLAEIAKPD---IAVITNIGPAHLEGFG-SLEGIAEAKGEILQG 182

Query: 251 GRP----VVSAYDAG------IRATINGLSM-FNDRPCQSCDIIVQAERDLKLSI----E 295
            +     V++A D             N LS  F     ++ DI   A      ++     
Sbjct: 183 LKENGIAVINADDPAFLDFAKRLPNRNILSFGFEGGDFRAADISYSALGSTSFTLVTPGG 242

Query: 296 LLDVKLCMIGNHQLHNALTATCAALCL 322
             +V L ++G H + NAL A   AL L
Sbjct: 243 EFEVSLPLLGRHNVMNALAAAALALEL 269

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 417

>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 50/159 (31%)

Query: 97  VHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF 156
           V + GT GK +T   ++ IL+  G  VG  T+  +      ++ G    P SA+    L 
Sbjct: 483 VAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSAR--RVLM 540

Query: 157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSG 216
           +                                   V+ AV+E   GG       I   G
Sbjct: 541 NP---------------------------------DVEAAVLETARGG-------ILREG 560

Query: 217 LA-----ASVITTIGEEHTAALGG--SLETIAMAKSGII 248
           LA       V+T IGE+H   LGG  +LE +A  K  ++
Sbjct: 561 LAYDRCDVGVVTNIGEDHL-GLGGINTLEDLAKVKRVVV 598

Length = 727

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 27/153 (17%)

Query: 191 NHVDIAVIEAGLGGARDATNIISSSGLAA---SVITTIGEEHTAALGGSLETIAMAKSGI 247
                AV E G+    +   I   + +AA   +++T    EH   +  S+E +A AK  I
Sbjct: 656 AQHRAAVFELGMNHPGE---IAYLAAIAAPTVALVTNAQREHQEFMH-SVEAVARAKGEI 711

Query: 248 IKYGRP----VVSAYDA--GIRATINGLSMFNDRPCQ-SCDIIVQAER-----------D 289
           I         VV+  D    I A + G         Q   D+  +               
Sbjct: 712 IAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTR 771

Query: 290 LKLSI--ELLDVKLCMIGNHQLHNALTATCAAL 320
            ++       +V L +IG H L NAL A   AL
Sbjct: 772 CQVVTPAGSAEVYLPLIGEHNLRNALAAIACAL 804

Length = 958

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
PLN02913	510	dihydrofolate synthetase	100.0
COG0285	427	FolC Folylpolyglutamate synthase [Coenzyme metabol	100.0
PLN02881	530	tetrahydrofolylpolyglutamate synthase	100.0
KOG2525	496	consensus Folylpolyglutamate synthase [Coenzyme tr	100.0
TIGR01499	397	folC folylpolyglutamate synthase/dihydrofolate syn	100.0
PRK10846	416	bifunctional folylpolyglutamate synthase/ dihydrof	100.0
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	100.0
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	100.0
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	100.0
TIGR01143	417	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	100.0
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	100.0
PRK10773	453	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	99.98
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.98
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	99.98
PRK14022	481	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l	99.98
PRK14093	479	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop	99.98
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	99.97
COG0770	451	MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce	99.97
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	99.97
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	99.97
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.97
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.96
PRK11930	822	putative bifunctional UDP-N-acetylmuramoyl-tripept	99.96
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	99.96
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	99.96
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.96
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	99.96
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	99.96
PRK14016	727	cyanophycin synthetase; Provisional	99.96
PF08245	188	Mur_ligase_M: Mur ligase middle domain; InterPro:	99.95
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	99.95
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	99.94
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.94
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	99.91
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.96
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.79
PHA02519	387	plasmid partition protein SopA; Reviewed	96.41
PRK13705	388	plasmid-partitioning protein SopA; Provisional	96.26
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.22
PRK13869	405	plasmid-partitioning protein RepA; Provisional	96.04
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.34
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	95.34
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	94.61
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	94.25
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	94.14
COG3367	339	Uncharacterized conserved protein [Function unknow	94.09
TIGR03172	232	probable selenium-dependent hydroxylase accessory	93.97
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	93.45
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	93.02
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	92.89
COG2403	449	Predicted GTPase [General function prediction only	92.22
TIGR00064	272	ftsY signal recognition particle-docking protein F	92.02
PRK07667	193	uridine kinase; Provisional	91.74
KOG0780	483	consensus Signal recognition particle, subunit Srp	91.71
cd03114	148	ArgK-like The function of this protein family is u	90.86
PRK15453	290	phosphoribulokinase; Provisional	90.86
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	90.78
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	90.65
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	90.32
PRK06761	282	hypothetical protein; Provisional	90.32
PRK10416	318	signal recognition particle-docking protein FtsY;	90.28
PRK14974	336	cell division protein FtsY; Provisional	90.04
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	90.03
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	89.94
PRK05632	684	phosphate acetyltransferase; Reviewed	89.88
COG1663	336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	89.78
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	89.06
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	89.06
PRK13232	273	nifH nitrogenase reductase; Reviewed	89.03
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	88.92
cd02117	212	NifH_like This family contains the NifH (iron prot	88.63
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	88.31
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	88.07
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	87.97
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	87.96
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	87.45
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	87.21
COG4240	300	Predicted kinase [General function prediction only	87.2
PRK05439	311	pantothenate kinase; Provisional	86.63
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	86.47
PRK00771	437	signal recognition particle protein Srp54; Provisi	86.39
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	86.38
PRK06696	223	uridine kinase; Validated	86.36
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	85.99
cd02040	270	NifH NifH gene encodes component II (iron protein)	85.89
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	85.67
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	85.57
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	85.53
COG2894	272	MinD Septum formation inhibitor-activating ATPase	85.33
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	85.29
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	84.99
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	84.73
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	84.72
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	84.72
PRK00784	488	cobyric acid synthase; Provisional	84.72
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	84.35
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	83.97
cd03116	159	MobB Molybdenum is an essential trace element in t	83.78
PRK10037	250	cell division protein; Provisional	83.71
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	83.69
PRK12374	231	putative dithiobiotin synthetase; Provisional	83.45
PHA02518	211	ParA-like protein; Provisional	83.45
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	83.38
TIGR01287	275	nifH nitrogenase iron protein. This model describe	83.1
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	82.86
PRK13849	231	putative crown gall tumor protein VirC1; Provision	82.6
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	82.54
cd02032	267	Bchl_like This family of proteins contains bchL an	82.41
cd02036	179	MinD Bacterial cell division requires the formatio	82.4
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	82.37
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	82.15
PRK13236	296	nitrogenase reductase; Reviewed	81.94
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	81.86
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	81.81
CHL00175	281	minD septum-site determining protein; Validated	81.65
PRK10867	433	signal recognition particle protein; Provisional	81.56
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	81.47
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	81.18
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	80.89
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	80.86
PRK13230	279	nitrogenase reductase-like protein; Reviewed	80.27
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	80.12
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	80.04

>PLN02913 dihydrofolate synthetase

Probab=100.00  E-value=3.1e-67  Score=533.78  Aligned_cols=316  Identities=66%  Similarity=0.977  Sum_probs=270.8

Q ss_pred             cccCCCCCccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHH
Q 018577           35 FFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSS  114 (353)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~  114 (353)
                      -|+++.+.|+|++|++||++++.+++.|.|+++|.+.++.++|+||+++|++||+|+.++++|||||||||||||+||++
T Consensus        16 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~   95 (510)
T PLN02913         16 LFSSSTEEPELGDFLRYLDSLKNYEKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSN   95 (510)
T ss_pred             hccccccCcCHHHHHHHHHhhccccccCCccccccccccCCCHHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHH
Confidence            35556688999999999999999988888988887766679999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCC
Q 018577          115 ILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVD  194 (353)
Q Consensus       115 IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d  194 (353)
                      ||+++||+||+|||||+.+++|||++|..|.+||++++.++++++++..+++.......+|+||++|++||++|.+.++|
T Consensus        96 iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD  175 (510)
T PLN02913         96 ILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVD  175 (510)
T ss_pred             HHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999999999999988999999999999999999988765444457999999999999999999999


Q ss_pred             EEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec--CchhHHHHHHHhHHh
Q 018577          195 IAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA--YDAGIRATINGLSMF  272 (353)
Q Consensus       195 ~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~--dd~~~~~~~~~~~~~  272 (353)
                      ++|+|||+||++|+||++++..|+++|||||+.||+++||+|+|+||.+|+||+|++.|+|.+  ..+....++.+.|..
T Consensus       176 ~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~~  255 (510)
T PLN02913        176 IAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKASS  255 (510)
T ss_pred             EEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHHH
Confidence            999999999999999999877789999999999999999999999999999999999997775  346666777777776


Q ss_pred             cCCCCccc---ceEEEe------ec-ceeeee-------------eeeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCC
Q 018577          273 NDRPCQSC---DIIVQA------ER-DLKLSI-------------ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYL  329 (353)
Q Consensus       273 ~~~~~~~~---d~~~~~------~~-~~~~~~-------------~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi  329 (353)
                      .++++...   ++.+..      .+ .+.+..             ...++.++++|.||+.|+++|++++..|...++++
T Consensus       256 ~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i  335 (510)
T PLN02913        256 MNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRI  335 (510)
T ss_pred             hCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            67664322   111100      01 122100             11246789999999999999999999885456789


Q ss_pred             CHHHHHHHHhcCCCCCcceeec
Q 018577          330 MLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       330 ~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +.+.|++||+++ .|||||..+
T Consensus       336 ~~~~I~~gL~~~-~~pGR~E~i  356 (510)
T PLN02913        336 SDASIRAGLENT-NLLGRSQFL  356 (510)
T ss_pred             CHHHHHHHHHhC-CCCCceEEe
Confidence            999999999998 699998764

>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]

Probab=100.00  E-value=1.3e-66  Score=512.74  Aligned_cols=289  Identities=37%  Similarity=0.546  Sum_probs=245.8

Q ss_pred             ccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (353)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~  122 (353)
                      +++++..+||..+..+...+         ...++|+||++++++||+|++.+++|||+|||||||||+||++||.++||+
T Consensus         2 ~~~~~~~~wl~~l~~~~~~~---------~i~~gL~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~   72 (427)
T COG0285           2 MSLQELAEWLHYLEQLHPKP---------GIDLGLERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYK   72 (427)
T ss_pred             cchHHHHHHHHHHHhcCCCC---------cccCChHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCC
Confidence            34566667776665543211         113789999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecC
Q 018577          123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGL  202 (353)
Q Consensus       123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~  202 (353)
                      ||.|||||+.+|+|||++|  |.+||++++.++++++++......   ...||+||++|++||++|++.++|++|+|||+
T Consensus        73 VG~yTSPHL~~~~ERI~in--g~~Isd~~~~~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGL  147 (427)
T COG0285          73 VGVYTSPHLLSFNERIRIN--GEPISDEELAAAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILEVGL  147 (427)
T ss_pred             ceEECCCccCccceEEEEC--CEECCHHHHHHHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEeccc
Confidence            9999999999999999999  999999999999998887654332   47899999999999999999999999999999


Q ss_pred             CCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeecC--chhHHHHHHHhHHhcCCCCccc
Q 018577          203 GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAY--DAGIRATINGLSMFNDRPCQSC  280 (353)
Q Consensus       203 gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~d--d~~~~~~~~~~~~~~~~~~~~~  280 (353)
                      |||+|+||+++   |.++|||||+.||+++||+|+++||++|+||||+|+|+|.++  .|.+..++++.+...++++...
T Consensus       148 GGRlDATNVi~---p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~  224 (427)
T COG0285         148 GGRLDATNVIE---PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVL  224 (427)
T ss_pred             cccccchhccC---CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeec
Confidence            99999999998   579999999999999999999999999999999999999886  4678889998888888776544


Q ss_pred             ceEEEeec---ceeee--eeeeeeeeCCCchH-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeecc
Q 018577          281 DIIVQAER---DLKLS--IELLDVKLCMIGNH-QLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  352 (353)
Q Consensus       281 d~~~~~~~---~~~~~--~~~~~~~l~l~G~h-q~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  352 (353)
                      +.......   .+.+.  .....+.+|+.|.| |+.||++|++++..+..   .++.+.|++||+++ .||||+..+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~~---~i~~~~i~~gl~~~-~wpGR~e~l~  298 (427)
T COG0285         225 GPDFQVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALGK---EISEEAIRKGLANV-DWPGRLERLS  298 (427)
T ss_pred             ccchhhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHhcc---cCCHHHHHHHHHhC-cCCceEEEec
Confidence            32222111   23222  13457889999988 99999999999999932   48999999999997 8999998764

>PLN02881 tetrahydrofolylpolyglutamate synthase

Probab=100.00  E-value=8.6e-58  Score=460.21  Aligned_cols=291  Identities=29%  Similarity=0.406  Sum_probs=244.7

Q ss_pred             CccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCC--CCCcEEEEcCCCCchHHHHHHHHHHHHc
Q 018577           42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPH--SKFKTVHIAGTKGKGSTAAFLSSILRAE  119 (353)
Q Consensus        42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~--~~~~vI~VtGTnGKtSTt~ml~~IL~~~  119 (353)
                      ..+|+++++||++++....+..+      ...+++|+||+++|++||+|+  .++++|||||||||||||+||++||+++
T Consensus        13 ~~~y~~a~~~L~sl~~~~~~~~~------~~~~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~   86 (530)
T PLN02881         13 SDSYEEALDALSSLITKKSRADP------SNPGDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNC   86 (530)
T ss_pred             ccCHHHHHHHHHhcccchhhccc------cccCCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence            34699999999998765332211      112378999999999999997  7889999999999999999999999999


Q ss_pred             CCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEe
Q 018577          120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE  199 (353)
Q Consensus       120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlE  199 (353)
                      |++||+|||||+.+++|||++|  |.+|+++.|.+++.++.+.++.......+.|++||++|++||.+|.+.++|++|+|
T Consensus        87 G~rvGl~tSPhL~~~rERirin--g~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlE  164 (530)
T PLN02881         87 GFRTGLFTSPHLIDVRERFRLD--GVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILE  164 (530)
T ss_pred             CCCEEEECCCccCcceeEEEEC--CEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999999999999999999999  99999999999998777776654322234599999999999999999999999999


Q ss_pred             ecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec-CchhHHHHHHHhHHhcCCCCc
Q 018577          200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFNDRPCQ  278 (353)
Q Consensus       200 vG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~-dd~~~~~~~~~~~~~~~~~~~  278 (353)
                      +|+||++|+||++..  |+++|||||+.||+++||+|+++||++|++||++|+|++.+ +++++.+++++.|.+.++++.
T Consensus       165 vGlgGr~DaTnvi~~--p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~  242 (530)
T PLN02881        165 VGLGGRLDATNVVQK--PVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQPDEAMRVLEERASELGVPLQ  242 (530)
T ss_pred             ecCCCCchhhhccCC--CCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeCCChHHHHHHHHHHHHhCCcEE
Confidence            999999999998743  68999999999999999999999999999999999998887 457788899888988888765


Q ss_pred             ccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHH-HhcC---------CCCCHHHHHHHHhcCCCCCcce
Q 018577          279 SCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCL-RDQG---------GYLMLSYFLSGFREEHFWRAEI  348 (353)
Q Consensus       279 ~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l-~~~~---------~gi~~~~I~~gL~~~~~~pgR~  348 (353)
                      ..+. .   ..+.    ...+.++|.|.||..||++|++++..+ ++.+         .....+.+++||+++ .||||+
T Consensus       243 ~v~~-~---~~~~----~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~-~wpGR~  313 (530)
T PLN02881        243 VVEP-L---DSYG----LSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTA-SLQGRA  313 (530)
T ss_pred             Eecc-c---ccce----ecccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhC-CCCceE
Confidence            3321 0   0111    124678999999999999999999876 3222         124456999999997 799999


Q ss_pred             eec
Q 018577          349 FLM  351 (353)
Q Consensus       349 ~~~  351 (353)
                      +.+
T Consensus       314 e~v  316 (530)
T PLN02881        314 QVV  316 (530)
T ss_pred             EEe
Confidence            875

>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=9e-58  Score=444.93  Aligned_cols=296  Identities=35%  Similarity=0.517  Sum_probs=259.2

Q ss_pred             CccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCC--CCCCcEEEEcCCCCchHHHHHHHHHHHHc
Q 018577           42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNP--HSKFKTVHIAGTKGKGSTAAFLSSILRAE  119 (353)
Q Consensus        42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p--~~~~~vI~VtGTnGKtSTt~ml~~IL~~~  119 (353)
                      .++|+++..|+++|..+.+...+.++..+.+...+|.||+++|+++|+|  +.++++|||||||||||||+|+++||++.
T Consensus        18 ~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SILr~~   97 (496)
T KOG2525|consen   18 SKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESILRQQ   97 (496)
T ss_pred             chhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHHHhc
Confidence            3569999999999998887777777777788889999999999999999  88999999999999999999999999999


Q ss_pred             CCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEe
Q 018577          120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE  199 (353)
Q Consensus       120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlE  199 (353)
                      |+|+|+|||||+.+.+|||++|  |.|||++.|.+.|.++.+..+....++...|++||++|++||.+|..++||++|+|
T Consensus        98 g~rtG~yTSPHLl~vrErIriN--GqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViE  175 (496)
T KOG2525|consen   98 GLRTGFYTSPHLLSVRERIRIN--GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIE  175 (496)
T ss_pred             ccccccccChhhcchhheEEEC--CEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEE
Confidence            9999999999999999999999  99999999999999999999988878888999999999999999999999999999


Q ss_pred             ecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeecC-chhHHHHHHHhHHhcCCCCc
Q 018577          200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAY-DAGIRATINGLSMFNDRPCQ  278 (353)
Q Consensus       200 vG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~d-d~~~~~~~~~~~~~~~~~~~  278 (353)
                      ||+||++|+||++.  +|.+++||+||.||+++||+|+++||++||||||.|+|++..+ ++++++++++.|...+++++
T Consensus       176 vGlGG~~DaTNvI~--kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~q~~e~~nvL~~ra~e~~~~L~  253 (496)
T KOG2525|consen  176 VGLGGELDATNVIE--KPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVPQPPEALNVLKERASELGVPLF  253 (496)
T ss_pred             eccccccccccccc--cceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcCCcHHHHHHHHHHHHhcCCCce
Confidence            99999999999995  4789999999999999999999999999999999999977765 46789999999988888765


Q ss_pred             ccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHhc-C-----------CC--CCHHHHHHHHhcCCCC
Q 018577          279 SCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQ-G-----------GY--LMLSYFLSGFREEHFW  344 (353)
Q Consensus       279 ~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~-~-----------~g--i~~~~I~~gL~~~~~~  344 (353)
                      ..+..-        ..+.....+.+.|.||..|+.+|+.++..+... +           .+  +++. ...||+++ .|
T Consensus       254 ~v~p~~--------~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~l~GL~~~-~w  323 (496)
T KOG2525|consen  254 VVPPLE--------AYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPA-FLSGLAST-DW  323 (496)
T ss_pred             ecCCch--------hhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCHH-Hhcchhhc-cC
Confidence            433210        011123348899999999999999999877432 1           01  5544 55699997 89


Q ss_pred             Ccceeec
Q 018577          345 RAEIFLM  351 (353)
Q Consensus       345 pgR~~~~  351 (353)
                      |||.+.+
T Consensus       324 PGR~qil  330 (496)
T KOG2525|consen  324 PGRLQIL  330 (496)
T ss_pred             CCceEEE
Confidence            9998764

>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase

Probab=100.00  E-value=2e-56  Score=442.90  Aligned_cols=265  Identities=40%  Similarity=0.606  Sum_probs=222.7

Q ss_pred             hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (353)
Q Consensus        77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (353)
                      |+||+++|++||+|+.++++||||||||||||++||++||+++|++||+|||||+.+++|||++|  |.+++++++.+++
T Consensus         1 l~r~~~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~--g~~i~~~~~~~~~   78 (397)
T TIGR01499         1 LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRIN--GEPISDEELAQAF   78 (397)
T ss_pred             ChHHHHHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEEC--CEECCHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999  9999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCC
Q 018577          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (353)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~t  236 (353)
                      +++++..+.+.    ..||+||+.|++||.+|.+.++|++|+|+|+||++|++|+++   |+++|||||+.||+++||+|
T Consensus        79 ~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i~---p~vaViTnI~~DHl~~lG~t  151 (397)
T TIGR01499        79 EQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIE---PLVSVITSIGLDHTEILGDT  151 (397)
T ss_pred             HHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCcccccccC---CCeEEEccccHHHHHHhCcc
Confidence            99988765432    369999999999999999999999999999999999999986   57999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCccc--ceEEEe--ecceeeeee---eeeeeeCCCchHH
Q 018577          237 LETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQSC--DIIVQA--ERDLKLSIE---LLDVKLCMIGNHQ  308 (353)
Q Consensus       237 le~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~~~--d~~~~~--~~~~~~~~~---~~~~~l~l~G~hq  308 (353)
                      +|+|+++|++|++++.+ |++.||+....++.+.+...++++...  ++.+..  ...+.+...   ...++++++|.||
T Consensus       152 ~e~ia~~Ka~I~k~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  231 (397)
T TIGR01499       152 LEEIAWEKAGIIKEGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQ  231 (397)
T ss_pred             HHHHHHHHhCccCCCCCEEEcCCChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHH
Confidence            99999999999999877 556678877777766555444442211  221111  011222111   1246789999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          309 LHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       309 ~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++|+++|++++..+....+.++.+.|++||+++ .|||||..+
T Consensus       232 ~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~-~~pGR~e~i  273 (397)
T TIGR01499       232 AENAALALAALEVLGKQRPKLSEEAIRKGLANT-IWPGRLEIL  273 (397)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhC-CCCceEEEE
Confidence            999999999999983222246799999999999 599999765

A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.

>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional

Probab=100.00  E-value=5.7e-54  Score=427.87  Aligned_cols=278  Identities=30%  Similarity=0.391  Sum_probs=222.3

Q ss_pred             ccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (353)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~  122 (353)
                      ++|.++.+|++++..+   |+          +++|+||+++|+.||+|+++.++||||||||||||++||++||+++|++
T Consensus        11 ~~~~~~~~~l~~~~~~---~~----------~~~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~   77 (416)
T PRK10846         11 SPLASWLSYLENLHSK---TI----------DLGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYR   77 (416)
T ss_pred             HHHHHHHHHHHhcccc---CC----------CCChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCC
Confidence            3467788888877654   22          3789999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecC
Q 018577          123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGL  202 (353)
Q Consensus       123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~  202 (353)
                      ||+|||||+.+++|||++|  |.+++++++.+.++++.+..+      ...||+||++|++||.+|.+.++|++|+|+|+
T Consensus        78 vG~~tSphl~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~~------~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvgl  149 (416)
T PRK10846         78 VGVYSSPHLVRYTERVRIQ--GQELPESAHTASFAEIEAARG------DISLTYFEYGTLSALWLFKQAQLDVVILEVGL  149 (416)
T ss_pred             ceEECCCCCCCcceEEEEC--CEECCHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence            9999999999999999999  999999999988888776542      23699999999999999999999999999999


Q ss_pred             CCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCccc-
Q 018577          203 GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQSC-  280 (353)
Q Consensus       203 gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~~~-  280 (353)
                      ||++|+||+++   |+++|||||++||+++||+|+|+|+++|++|++.+.+ |++.+|.  ..++...+...++++... 
T Consensus       150 ggrld~tn~i~---p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~~d~--~~~~~~~a~~~~~~~~~~~  224 (416)
T PRK10846        150 GGRLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGEPDM--PSTIADVAQEKGALLQRRG  224 (416)
T ss_pred             CCCchhhhccC---CCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECCccH--hHHHHHHHHHhCCcEEEec
Confidence            99999999985   5799999999999999999999999999999999887 4455441  123333444444443211 


Q ss_pred             -ceEEEee-cceeeeee-eeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          281 -DIIVQAE-RDLKLSIE-LLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       281 -d~~~~~~-~~~~~~~~-~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                       ++.+... ..+..... .....++++ .||++|+++|++++..+   +++++.+.|++||+++. ||||+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~---~~~i~~~~i~~~L~~~~-~~gR~e~~  293 (416)
T PRK10846        225 VDWNYSVTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS---GLEVSEQAIRDGIASAI-LPGRFQIV  293 (416)
T ss_pred             ceeeeeccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHhCC-CCceEEEE
Confidence             1111110 11111110 111235555 47999999999998765   35799999999999984 99998764

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=100.00  E-value=1e-35  Score=300.32  Aligned_cols=224  Identities=21%  Similarity=0.215  Sum_probs=169.2

Q ss_pred             cCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 018577           87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA  166 (353)
Q Consensus        87 lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~  166 (353)
                      +++|+.++++||||||||||||+.||++||+.+|+++++++||+..       ++  +.+++.                 
T Consensus        88 ~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~-------i~--~~~~~~-----------------  141 (460)
T PRK00139         88 YGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNG-------IG--GELIPS-----------------  141 (460)
T ss_pred             hcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccc-------cC--Ceeccc-----------------
Confidence            5788888999999999999999999999999999999999998753       33  333321                 


Q ss_pred             HhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHh
Q 018577          167 IRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG  246 (353)
Q Consensus       167 ~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~  246 (353)
                           ...|+|++.++.+|..|.+.++|++|+|+|+++. +.. .++..+|+++|||||+.||++++| |+|+|+++|++
T Consensus       142 -----~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~-~~~-~l~~~~p~iaViTnI~~dHl~~~g-t~e~i~~~K~~  213 (460)
T PRK00139        142 -----GLTTPDALDLQRLLAELVDAGVTYAAMEVSSHAL-DQG-RVDGLKFDVAVFTNLSRDHLDYHG-TMEDYLAAKAR  213 (460)
T ss_pred             -----CCCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhH-hhc-hhcCCcCCEEEEcCCCcccCCcCC-CHHHHHHHHHH
Confidence                 2357888888888999999999999999996543 111 122345789999999999999998 99999999999


Q ss_pred             cccCC--CceeecCchhHHHHHHHhHHhcCCCCcccceEEEe---e-cceeeeeeeeeeeeCCCchHHHHHHHHHHHHHH
Q 018577          247 IIKYG--RPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQA---E-RDLKLSIELLDVKLCMIGNHQLHNALTATCAAL  320 (353)
Q Consensus       247 Iik~g--~~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~~~~---~-~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~  320 (353)
                      |++..  ..|+|.||+....+... +..++......++....   . ....+... ..+.++++|.||++|+++|++++.
T Consensus       214 i~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~hn~~NalaAia~a~  291 (460)
T PRK00139        214 LFSELGLAAVINADDEVGRRLLAL-PDAYAVSMAGADLRATDVEYTDSGQTFTLV-TEVESPLIGRFNVSNLLAALAALL  291 (460)
T ss_pred             HHhcCCCeEEEEcCcHhHHHHHhh-cEEEEecCCCCcEEEEEEEEecCceEEEEE-EEEEecccchhHHHHHHHHHHHHH
Confidence            99864  45889998876655442 11122110011221110   0 11111111 157789999999999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          321 CLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       321 ~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      .+     |++.+.|+++|++|.++||||..+
T Consensus       292 ~l-----gi~~~~i~~~L~~~~~~~gR~e~~  317 (460)
T PRK00139        292 AL-----GVPLEDALAALAKLQGVPGRMERV  317 (460)
T ss_pred             Hc-----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence            99     999999999999998899999765

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=100.00  E-value=3.7e-33  Score=281.89  Aligned_cols=238  Identities=19%  Similarity=0.220  Sum_probs=170.3

Q ss_pred             hHHHHHHHH-HcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577           77 LGRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL  155 (353)
Q Consensus        77 l~r~~~~l~-~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~  155 (353)
                      +..+.++.+ .+++|+.++++|+||||||||||+.||+++|+.+|++|++++|++.....    .|.+|.|         
T Consensus        67 ~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~----n~~ig~p---------  133 (464)
T TIGR01085        67 RHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGG----NDLIKNP---------  133 (464)
T ss_pred             HHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECC----eeeecCc---------
Confidence            344555554 35667778899999999999999999999999999999999998753110    0111222         


Q ss_pred             HHHHHHHHHHHHhhcCCccChhHHHHHHH-HHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhC
Q 018577          156 FHKIKGVLDEAIRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG  234 (353)
Q Consensus       156 ~~~i~~~~~~~~~~~~~~~t~FE~~t~~a-~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG  234 (353)
                                      ..+|.||.+++.+ +..+.+.++|++|+|+|+++ ++...+.. .+|+++|||||+.||++++|
T Consensus       134 ----------------~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~-~~~~~l~~-~~p~iaviTnI~~dHl~~~g  195 (464)
T TIGR01085       134 ----------------AALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHA-LAQGRVRG-VRFDAAVFTNLSRDHLDFHG  195 (464)
T ss_pred             ----------------ccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHH-HhhCCccC-ceeCEEEEccCCCCCCcccC
Confidence                            2367888888654 44555789999999999533 33333333 56899999999999999998


Q ss_pred             CCHHHHHHHHHhcccC----CCceeecCchhHHHHHHHhHHh--cCC-----CCcccceEEEe-----ec-ceeeee--e
Q 018577          235 GSLETIAMAKSGIIKY----GRPVVSAYDAGIRATINGLSMF--NDR-----PCQSCDIIVQA-----ER-DLKLSI--E  295 (353)
Q Consensus       235 ~tle~ia~~Ka~Iik~----g~~vv~~dd~~~~~~~~~~~~~--~~~-----~~~~~d~~~~~-----~~-~~~~~~--~  295 (353)
                       |+|+|+++|++|++.    |..|+|.|||....+.......  ++.     +....++....     .. .+.+..  .
T Consensus       196 -s~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (464)
T TIGR01085       196 -TMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAG  274 (464)
T ss_pred             -CHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEEecCceEEEEEeCCc
Confidence             999999999999985    3568999998765544321110  110     00011221111     11 122221  2


Q ss_pred             eeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCCCCcceeec
Q 018577          296 LLDVKLCMIGNHQLHNALTATCAALCLRDQGGY-LMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       296 ~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~g-i~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ...+++|++|.||++|+++|++++..+     + ++.+.|+++|++|.++||||..+
T Consensus       275 ~~~~~l~l~G~hn~~NalaAia~a~~l-----g~i~~e~i~~~L~~~~~~~gR~e~~  326 (464)
T TIGR01085       275 EGHLHTPLIGRFNVYNLLAALATLLHL-----GGIDLEDIVAALEKFRGVPGRMELV  326 (464)
T ss_pred             eEEEEecCccHhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCCCCCCcEEE
Confidence            245789999999999999999999999     7 99999999999999899999865

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=100.00  E-value=8.3e-33  Score=301.31  Aligned_cols=234  Identities=18%  Similarity=0.240  Sum_probs=165.5

Q ss_pred             HHHHHHHH-HcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577           78 GRMNRLMD-RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (353)
Q Consensus        78 ~r~~~~l~-~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (353)
                      +.+..+.+ .+++|+.++++||||||||||||+.||++||+.+|+++++++|.     ++++  +  +..+.        
T Consensus        95 ~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~-----~~~i--~--~~~i~--------  157 (958)
T PRK11929         95 KALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTL-----GARL--D--GRLIP--------  157 (958)
T ss_pred             HHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCc-----cccC--C--Ceeee--------
Confidence            44444444 67889889999999999999999999999999999999997663     2222  1  11111        


Q ss_pred             HHHHHHHHHHHhhcCCccChhHHHHHHH-HHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCC
Q 018577          157 HKIKGVLDEAIRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGG  235 (353)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a-~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~  235 (353)
                                     .++|.+|..++.. |..|.+.++|++|+|+|+++. +... ++..+|+++|||||++||+++|| 
T Consensus       158 ---------------~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss~~l-~~~r-l~~~~p~iaviTnI~~dHl~~~g-  219 (958)
T PRK11929        158 ---------------GSLTTPDAIILHRILARMRAAGADAVAMEASSHGL-EQGR-LDGLRIAVAGFTNLTRDHLDYHG-  219 (958)
T ss_pred             ---------------cCCCCCCHHHHHHHHHHHHHCCCCEEEEEeccchH-hhCc-ccccccCEEEEeCCCccccccCC-
Confidence                           1234444444443 346778999999999985442 1111 22345789999999999999998 


Q ss_pred             CHHHHHHHHHhccc---C-CCceeecCchhHHHHHHHhHHhcCCCCc----ccceEEEe---e--c-ceeeee--eeeee
Q 018577          236 SLETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGLSMFNDRPCQ----SCDIIVQA---E--R-DLKLSI--ELLDV  299 (353)
Q Consensus       236 tle~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~~~~~~~~~~----~~d~~~~~---~--~-~~~~~~--~~~~~  299 (353)
                      |+|+|+++|++|++   + +..|+|.|||....+....+......+.    ..++....   .  + .+.+..  ....+
T Consensus       220 t~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (958)
T PRK11929        220 TMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQL  299 (958)
T ss_pred             CHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCceEEE
Confidence            99999999999998   3 3448899998876665432211000000    11222111   0  1 122221  22457


Q ss_pred             eeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          300 KLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       300 ~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      .+|++|.||++|+++|++++..+     |++.+.|+++|++|.++||||..+
T Consensus       300 ~l~l~G~hnv~NalaAia~a~~l-----gi~~~~I~~~L~~~~~~~gR~e~i  346 (958)
T PRK11929        300 VTRLLGRFNVSNLLLVAAALKKL-----GLPLAQIARALAAVSPVPGRMERV  346 (958)
T ss_pred             EecCccHhhHHHHHHHHHHHHHc-----CCCHHHHHHHHhcCCCCCCCcEEe
Confidence            89999999999999999999999     999999999999998899999865

>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

Probab=100.00  E-value=1.4e-32  Score=274.22  Aligned_cols=205  Identities=27%  Similarity=0.353  Sum_probs=151.1

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||+.||+++|+..|+   .+.|++  ++++     .+|.|.+                        
T Consensus        73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~-----~ig~p~~------------------------  118 (417)
T TIGR01143        73 SGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNN-----EIGLPLT------------------------  118 (417)
T ss_pred             CCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCC-----ccchhHH------------------------
Confidence            36899999999999999999999999986   345553  2322     2343332                        


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--  250 (353)
                                   .++.+.++|++|+|+|+++.++....+...+|+++|||||+.||+|+|| |+|+|+++|++|++.  
T Consensus       119 -------------~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p~vaviTNi~~dHld~~g-s~e~~~~aK~~l~~~~~  184 (417)
T TIGR01143       119 -------------LLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQGLK  184 (417)
T ss_pred             -------------HhcCCCCCeEEEEEeCCCCCCcHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHcccC
Confidence                         1245778999999999888888776666677899999999999999998 999999999999974  


Q ss_pred             --CCceeecCchhHHHHHHHhH----HhcCC---CCcccceEEEeec--ceeeee--eeeeeeeCCCchHHHHHHHHHHH
Q 018577          251 --GRPVVSAYDAGIRATINGLS----MFNDR---PCQSCDIIVQAER--DLKLSI--ELLDVKLCMIGNHQLHNALTATC  317 (353)
Q Consensus       251 --g~~vv~~dd~~~~~~~~~~~----~~~~~---~~~~~d~~~~~~~--~~~~~~--~~~~~~l~l~G~hq~~Na~~Ala  317 (353)
                        +..|+|.|||....+.....    ..++.   ++...++.....+  .+.+..  ....++++++|.||++|+++|++
T Consensus       185 ~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia  264 (417)
T TIGR01143       185 ENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAA  264 (417)
T ss_pred             CCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceEEEEccCCcHHHHHHHHHHHH
Confidence              45589999987655433211    11221   1111111111111  122221  22357889999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceee
Q 018577          318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL  350 (353)
Q Consensus       318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~  350 (353)
                      ++..+     |++.+.|.++|++|.++||||..
T Consensus       265 ~~~~l-----Gi~~~~i~~~l~~~~~~~gR~e~  292 (417)
T TIGR01143       265 LALEL-----GIPLEEIAEGLAELKLVKGRFEI  292 (417)
T ss_pred             HHHHc-----CCCHHHHHHHHHhCCCCCCceeE
Confidence            99999     99999999999999999999973

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=100.00  E-value=4.7e-32  Score=274.84  Aligned_cols=202  Identities=21%  Similarity=0.220  Sum_probs=146.3

Q ss_pred             CCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh
Q 018577           90 PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL  169 (353)
Q Consensus        90 p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~  169 (353)
                      +..+.++|+||||||||||+.||+++|+.+|.+++.              ++|+|.|++..                   
T Consensus       118 ~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~--------------~Gnig~~~~~~-------------------  164 (480)
T PRK01438        118 PDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAA--------------VGNIGTPVLDA-------------------  164 (480)
T ss_pred             ccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEE--------------ECCccHHHHHH-------------------
Confidence            444678999999999999999999999999988764              23446555310                   


Q ss_pred             cCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhccc
Q 018577          170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK  249 (353)
Q Consensus       170 ~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik  249 (353)
                                       .....+.|++|+|+|+.+. +..+.+   +|+++|||||++||+++|| |+|+|+.+|++|++
T Consensus       165 -----------------~~~~~~~~~~V~E~ss~~l-~~~~~i---~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~  222 (480)
T PRK01438        165 -----------------VRDPEGYDVLAVELSSFQL-HWSPSV---SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYE  222 (480)
T ss_pred             -----------------HhcCCCCCEEEEEcChHHh-CcCccc---CCCEEEEecCChhhccccC-CHHHHHHHHHHHHh
Confidence                             1234568999999999876 333444   4789999999999999999 99999999999999


Q ss_pred             CCC--ceeecCchhHHHHHHHhHHhcCCCCcc--------cceEEEe----ecceeee-----eeee-eeeeCCCchHHH
Q 018577          250 YGR--PVVSAYDAGIRATINGLSMFNDRPCQS--------CDIIVQA----ERDLKLS-----IELL-DVKLCMIGNHQL  309 (353)
Q Consensus       250 ~g~--~vv~~dd~~~~~~~~~~~~~~~~~~~~--------~d~~~~~----~~~~~~~-----~~~~-~~~l~l~G~hq~  309 (353)
                      ++.  .|+|.|||.+..++.+.+...++++..        .++....    ...+...     .... ..+++++|.||+
T Consensus       223 ~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~  302 (480)
T PRK01438        223 GTTVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNI  302 (480)
T ss_pred             CCCceEEEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHH
Confidence            753  377888988777665443222222110        0111100    0001000     0001 125899999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          310 HNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       310 ~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +|+++|++++..+     +++.+.|+++|++|.++||||..+
T Consensus       303 ~Na~aAia~~~~l-----gi~~~~i~~~L~~~~~~~gR~E~i  339 (480)
T PRK01438        303 ANALAAAALARSF-----GVPPAAVRDGLRAFRPDAHRIEHV  339 (480)
T ss_pred             HHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            9999999999988     999999999999998888999764

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

Probab=99.98  E-value=1.1e-31  Score=270.45  Aligned_cols=206  Identities=22%  Similarity=0.281  Sum_probs=149.2

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      ..++|+||||||||||+.||+++|+..|..+   .+++.  +|     |.+|.|.+.                       
T Consensus        99 ~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~---~t~gn--~n-----~~~G~~~~~-----------------------  145 (453)
T PRK10773         99 PARVVALTGSSGKTSVKEMTAAILRQCGNTL---YTAGN--LN-----NDIGVPLTL-----------------------  145 (453)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHHhcCccc---ccCcc--cc-----CCcccccHH-----------------------
Confidence            3689999999999999999999999998653   33321  11     223554431                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--  250 (353)
                                    .....++|++|+|+|+....+....+...+|+++|||||+.||+++|| |+|+|+++|++|++.  
T Consensus       146 --------------~~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s~e~~~~aK~~l~~~~~  210 (453)
T PRK10773        146 --------------LRLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLP  210 (453)
T ss_pred             --------------hcCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-CHHHHHHHHHHHHcccC
Confidence                          012457899999999876666555566667899999999999999998 999999999999963  


Q ss_pred             --CCceeecCchhHHHHHHHhH----HhcCC------CCcccceEEEeec-ceeeee--eeeeeeeCCCchHHHHHHHHH
Q 018577          251 --GRPVVSAYDAGIRATINGLS----MFNDR------PCQSCDIIVQAER-DLKLSI--ELLDVKLCMIGNHQLHNALTA  315 (353)
Q Consensus       251 --g~~vv~~dd~~~~~~~~~~~----~~~~~------~~~~~d~~~~~~~-~~~~~~--~~~~~~l~l~G~hq~~Na~~A  315 (353)
                        +..|+|.|||....+.....    ..++.      ++...++.....+ .+.+..  ....+++|++|.||++|+++|
T Consensus       211 ~~g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~hnv~NalaA  290 (453)
T PRK10773        211 ENGIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHNIANALAA  290 (453)
T ss_pred             CCCEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceEEEEecCCcHhHHHHHHHH
Confidence              55699999987654433211    11221      1111122111111 122221  224688999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++++..+     |++.+.|+++|++|.++||||+.+
T Consensus       291 ia~a~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v  321 (453)
T PRK10773        291 AALAMSV-----GATLDAVKAGLANLKAVPGRLFPI  321 (453)
T ss_pred             HHHHHHc-----CCCHHHHHHHHHhCCCCCCceeEE
Confidence            9999999     999999999999999999999765

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.98  E-value=8.3e-32  Score=271.73  Aligned_cols=197  Identities=22%  Similarity=0.211  Sum_probs=143.9

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||++||+++|+.+|+++.+              .+|+|.|++.                       
T Consensus       113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~--------------~gnig~~~~~-----------------------  155 (460)
T PRK01390        113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQM--------------GGNIGTAVLT-----------------------  155 (460)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEE--------------cCccchhhhh-----------------------
Confidence            468999999999999999999999999988653              2345665531                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC-
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG-  251 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g-  251 (353)
                                    .....+.|++|+|+|+.+ +|.++.+.   |+++|||||++||+++|| |+|+|+.+|++|++.+ 
T Consensus       156 --------------~~~~~~~~~~V~E~~~~~-ld~t~~i~---P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~  216 (460)
T PRK01390        156 --------------LEPPPAGRVYVLELSSYQ-IDLAPSLD---PDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQG  216 (460)
T ss_pred             --------------cccCCCCCEEEEEcCccc-cccccccC---CCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence                          012346899999999886 48888774   689999999999999998 8999999999999986 


Q ss_pred             -Cc-eeecCchhHHHHHHHhHHhcCCCCccc--------ceEEEeecceeeeee----eeee--eeCCCchHHHHHHHHH
Q 018577          252 -RP-VVSAYDAGIRATINGLSMFNDRPCQSC--------DIIVQAERDLKLSIE----LLDV--KLCMIGNHQLHNALTA  315 (353)
Q Consensus       252 -~~-vv~~dd~~~~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~~~~~~----~~~~--~l~l~G~hq~~Na~~A  315 (353)
                       .+ |+|.||+.+..+.+... ..++++...        ++.......+.....    ...+  .++++|.||++|+++|
T Consensus       217 ~~~~V~n~dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA  295 (460)
T PRK01390        217 PDTAVIGVDDAYCRAIADRLE-AAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAA  295 (460)
T ss_pred             CCEEEEeCCCHHHHHHHHhcc-ccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHH
Confidence             44 77788887665543321 122221100        010000000111000    0111  1579999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++++..+     +++.+.|++||++|.+|||||..+
T Consensus       296 iaa~~~l-----gi~~~~i~~gL~~~~~~~gR~e~i  326 (460)
T PRK01390        296 YAAARAL-----GLSPEEIAAGLASFPGLAHRMEQV  326 (460)
T ss_pred             HHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            9999999     999999999999998999999764

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=99.98  E-value=8.5e-32  Score=266.68  Aligned_cols=199  Identities=25%  Similarity=0.238  Sum_probs=148.1

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      ..|+|+|||||||||||+||+++|+++|+++.+              .+|||.|+.+-.                     
T Consensus       109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l--------------gGNIG~p~l~~~---------------------  153 (448)
T COG0771         109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL--------------GGNIGTPALELL---------------------  153 (448)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHHhcCCCcee--------------ccccCccHHHhh---------------------
Confidence            467999999999999999999999999999876              467888875310                     


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~  252 (353)
                                     -.....|++|+|+++.+... +.   ..+|.++|||||++||+|||| ++|+|+.+|..|++...
T Consensus       154 ---------------~~~~~~d~~VlElSSfQL~~-~~---~~~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~  213 (448)
T COG0771         154 ---------------EQAEPADVYVLELSSFQLET-TS---SLRPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQT  213 (448)
T ss_pred             ---------------cccCCCCEEEEEcccccccc-Cc---cCCccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCc
Confidence                           11357899999999998743 33   234789999999999999997 99999999999999877


Q ss_pred             --ceeecCchhHHHHHHHhH------HhcCCCCcccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577          253 --PVVSAYDAGIRATINGLS------MFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRD  324 (353)
Q Consensus       253 --~vv~~dd~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~  324 (353)
                        .|+|.||+....+.....      ...+.++....+.......+.-..-...-.++++|.||+.|+++|+++|+.+  
T Consensus       214 ~~~Vin~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~--  291 (448)
T COG0771         214 EVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARAL--  291 (448)
T ss_pred             cEEEEeCCcHHHhhhhhhcccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHc--
Confidence              699999997766554320      0001110000000000000000000112368999999999999999999999  


Q ss_pred             cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          325 QGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                         |++.+.|.++|.+|++.|+||+.+
T Consensus       292 ---gv~~e~i~~~L~~F~gl~HR~e~v  315 (448)
T COG0771         292 ---GVPPEAILEALSSFTGLPHRLEFV  315 (448)
T ss_pred             ---CCCHHHHHHHHHhCCCCCcceEEE
Confidence               999999999999999999999764

>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

Probab=99.98  E-value=1.3e-31  Score=271.82  Aligned_cols=223  Identities=19%  Similarity=0.200  Sum_probs=147.6

Q ss_pred             HcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHH
Q 018577           86 RLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDE  165 (353)
Q Consensus        86 ~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~  165 (353)
                      .+++|+.++++|+||||||||||+.||++||+..|+++++-++.... ..+....++++.|.+                 
T Consensus       102 ~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~-ig~~~~~~~~~~p~~-----------------  163 (481)
T PRK14022        102 FYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTL-DGETFFKSALTTPES-----------------  163 (481)
T ss_pred             HhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeec-cCCeeeeCCCCCchH-----------------
Confidence            35779899999999999999999999999999998765543221110 000001111223311                 


Q ss_pred             HHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhh-CCCHHHHHHHH
Q 018577          166 AIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL-GGSLETIAMAK  244 (353)
Q Consensus       166 ~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~l-G~tle~ia~~K  244 (353)
                              ++.|++..     .+.+.++|++|+|+|++|.  ....++..+|+++|||||+.||++++ ++|+|+|+.+|
T Consensus       164 --------~~l~~~~~-----~~~e~g~~~~v~EvsS~~~--~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK  228 (481)
T PRK14022        164 --------LDLFKMMA-----EAVDNGMTHLIMEVSSQAY--LVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHK  228 (481)
T ss_pred             --------HHHHHHHH-----HHHHCCCCEEEEEechhHH--HhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHH
Confidence                    12233221     1457899999999997654  22223334589999999999999994 25999999999


Q ss_pred             HhcccCCCc-eeecC-chhHHHHHHHhHH----hcCCCCcccceEEEeecceeeeee---eeeeeeCCCchHHHHHHHHH
Q 018577          245 SGIIKYGRP-VVSAY-DAGIRATINGLSM----FNDRPCQSCDIIVQAERDLKLSIE---LLDVKLCMIGNHQLHNALTA  315 (353)
Q Consensus       245 a~Iik~g~~-vv~~d-d~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~l~l~G~hq~~Na~~A  315 (353)
                      ++|++++.+ |+|.| ++. .........    .++... ..++.  ....+.+...   ...++++++|.||++|+++|
T Consensus       229 ~~i~~~~~~~Vln~d~d~~-~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA  304 (481)
T PRK14022        229 RLLMENSKAVVVNSDMDHF-SELLEQVTPQEHDFYGIDS-ENQIM--ASNAFSFEATGKLAGTYDIQLIGKFNQENAMAA  304 (481)
T ss_pred             HHHhcCCCEEEEEcCCCHH-HHHHHHhcCCCEEEEecCC-ccceE--EEEEEEEEEcccCCceEEEEEechhhHHHHHHH
Confidence            999987655 77877 443 222222110    111100 00111  1111222111   12467889999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++++..+     |++.+.|+++|++ .+|||||..+
T Consensus       305 ia~a~~l-----gi~~~~i~~~L~~-~~~~gR~e~i  334 (481)
T PRK14022        305 GLACLRL-----GASLEDIQKGIAQ-TPVPGRMEVL  334 (481)
T ss_pred             HHHHHHc-----CCCHHHHHHHhcc-CCCCCCeEEE
Confidence            9999999     9999999999999 8999999765

>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

Probab=99.98  E-value=2.1e-31  Score=270.18  Aligned_cols=206  Identities=21%  Similarity=0.211  Sum_probs=151.5

Q ss_pred             CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577           92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN  171 (353)
Q Consensus        92 ~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~  171 (353)
                      .+.++|+||||||||||+.||+++|+..|.+++.   ++  ++     .|.+|.|.+   +                   
T Consensus       106 ~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~---~g--~~-----n~~iG~p~~---l-------------------  153 (479)
T PRK14093        106 LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHAS---VA--SF-----NNHWGVPLS---L-------------------  153 (479)
T ss_pred             cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCC---Cc--cC-----CCccchhHH---H-------------------
Confidence            4678999999999999999999999999875543   22  11     122354432   0                   


Q ss_pred             CccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC-
Q 018577          172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-  250 (353)
Q Consensus       172 ~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-  250 (353)
                                    . -...++|++|+|+|+++.++...++...+|+++|||||+.||+++|| |+|+|+++|.+|++. 
T Consensus       154 --------------~-~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~g-t~e~~~~aK~~l~~~~  217 (479)
T PRK14093        154 --------------A-RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFS-GIEAIADAKAEIFTGL  217 (479)
T ss_pred             --------------H-cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcC-CHHHHHHHHHHHHccC
Confidence                          0 12457899999999988888777777788999999999999999997 999999999999953 


Q ss_pred             ---CCceeecCchhHHHHHHHhH-------HhcCCC----CcccceEEEeec-ceeeee--eeeeeeeCCCchHHHHHHH
Q 018577          251 ---GRPVVSAYDAGIRATINGLS-------MFNDRP----CQSCDIIVQAER-DLKLSI--ELLDVKLCMIGNHQLHNAL  313 (353)
Q Consensus       251 ---g~~vv~~dd~~~~~~~~~~~-------~~~~~~----~~~~d~~~~~~~-~~~~~~--~~~~~~l~l~G~hq~~Na~  313 (353)
                         +..|+|.|||....+.....       ..++..    +...++...... .+.+..  ....++++++|.||++|++
T Consensus       218 ~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~Nal  297 (479)
T PRK14093        218 EPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHDVTYKLGMPGRHIAMNSL  297 (479)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCceEEEEecCCCHHHHHHHH
Confidence               45689999987765543211       112211    111111111111 122211  2246889999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceee
Q 018577          314 TATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFL  350 (353)
Q Consensus       314 ~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~  350 (353)
                      +|++++..+     |++.++|+++|++|.+.|||+..
T Consensus       298 aAia~a~~l-----Gi~~~~i~~~l~~~~~~~gR~~~  329 (479)
T PRK14093        298 AVLAAAELA-----GADLALAALALSQVQPAAGRGVR  329 (479)
T ss_pred             HHHHHHHHc-----CCCHHHHHHHHHhCCCcCCcceE
Confidence            999999999     99999999999999999999764

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=3.2e-31  Score=266.61  Aligned_cols=196  Identities=18%  Similarity=0.165  Sum_probs=142.7

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||++||++||+.+|+++.+              .+|+|.|...                        
T Consensus       108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~--------------ggnig~p~~~------------------------  149 (448)
T PRK03803        108 APVIAITGSNGKSTVTTLVGEMAKAAGKRVAV--------------GGNIGTPALD------------------------  149 (448)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHHhcCCCeEE--------------ecCcCHHHHH------------------------
Confidence            47999999999999999999999999987654              1234544310                        


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC-
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR-  252 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~-  252 (353)
                                    ....+.|++|+|+++.+. |.++.+.   |+++|||||++||+++|| |+|+|+++|++|++.+. 
T Consensus       150 --------------~~~~~~~~~V~E~ss~~l-~~~~~~~---P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~  210 (448)
T PRK03803        150 --------------LLSDDPELYVLELSSFQL-ETTHSLN---AEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQ  210 (448)
T ss_pred             --------------HhcCCCCEEEEEcChhhh-CcCcccC---ccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCe
Confidence                          113357999999998875 6677664   689999999999999998 89999999999999754 


Q ss_pred             ceeecCchhHHHHHHHhH--HhcCCCC-cccceEEEeecc--eeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577          253 PVVSAYDAGIRATINGLS--MFNDRPC-QSCDIIVQAERD--LKLSIE---LLDVKLCMIGNHQLHNALTATCAALCLRD  324 (353)
Q Consensus       253 ~vv~~dd~~~~~~~~~~~--~~~~~~~-~~~d~~~~~~~~--~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~  324 (353)
                      .|+|.||+.+..+.....  ..++..- ...++.+.....  +.....   ...++++++|.||++|+++|+++|..+  
T Consensus       211 ~V~n~dd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~l--  288 (448)
T PRK03803        211 VVFNRDDALTRPLVPDNQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAA--  288 (448)
T ss_pred             EEEeCCCHHHHHHhhcCCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHc--
Confidence            478888887665543211  1122110 000111111111  111110   113668999999999999999999999  


Q ss_pred             cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          325 QGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                         |++.+.|+++|++|+.+|+||..+
T Consensus       289 ---gi~~~~i~~~L~~f~g~~~R~e~v  312 (448)
T PRK03803        289 ---GLPKEAMLEVLRTFTGLPHRCEWV  312 (448)
T ss_pred             ---CCCHHHHHHHHhhCCCCCCceEEE
Confidence               999999999999998999999764

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=99.97  E-value=8.6e-31  Score=281.33  Aligned_cols=231  Identities=23%  Similarity=0.267  Sum_probs=163.6

Q ss_pred             HHHHHHHHcC--CCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577           79 RMNRLMDRLG--NPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (353)
Q Consensus        79 r~~~~l~~lg--~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (353)
                      -...+++.|-  .|+.++|+||||||||||||++||++||+.+|++||+++|+++...++.+..+   ....+       
T Consensus       462 v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g---~~t~p-------  531 (864)
T TIGR02068       462 VARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKG---DNTGP-------  531 (864)
T ss_pred             HHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecC---CCCCh-------
Confidence            4566777763  56778999999999999999999999999999999999998754333322211   11110       


Q ss_pred             HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhC-C
Q 018577          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-G  235 (353)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG-~  235 (353)
                                               ..++.+|.+.++|++|+|+|+||+++.++.+.  +|+++|||||+.||++++| +
T Consensus       532 -------------------------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~--~pdvaVITNI~~DHL~~~g~~  584 (864)
T TIGR02068       532 -------------------------ASARRILMDPTVDAAVLETARGGILREGLAFD--RCDVGVVTNIAGDHLGIGDIN  584 (864)
T ss_pred             -------------------------HHHHHHhhCCCCCEEEEEccCCchhhccCCcc--cccEEEEecCCHHHcCCCCCC
Confidence                                     22334577889999999999999998888765  3789999999999999876 7


Q ss_pred             CHHHHHHHHHhcc---cC-CCceeecCchhHHHHHHHhH---HhcCCC----CcccceE-----EEeecc-eee-ee---
Q 018577          236 SLETIAMAKSGII---KY-GRPVVSAYDAGIRATINGLS---MFNDRP----CQSCDII-----VQAERD-LKL-SI---  294 (353)
Q Consensus       236 tle~ia~~Ka~Ii---k~-g~~vv~~dd~~~~~~~~~~~---~~~~~~----~~~~d~~-----~~~~~~-~~~-~~---  294 (353)
                      |+|+|+.+|++|+   ++ +..|+|+|||.+..+.....   ..++.+    +...++.     ...... +.. ..   
T Consensus       585 tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~  664 (864)
T TIGR02068       585 TIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDE  664 (864)
T ss_pred             CHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCcc
Confidence            9999999999995   44 44588999988765544210   011100    0000000     000000 000 00   


Q ss_pred             ----eeeeeeeCCCc--hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CCcceeec
Q 018577          295 ----ELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFLM  351 (353)
Q Consensus       295 ----~~~~~~l~l~G--~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~----~pgR~~~~  351 (353)
                          ....+.+++.|  .||++|+++|+++++.+     +++.+.|++||++|.+    +||||..+
T Consensus       665 ~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l-----gi~~e~I~~gL~~F~~~~~~~pGR~e~~  726 (864)
T TIGR02068       665 VAIARIAAIPLTMGGRVAFQIENALAAVAAAWAL-----GVPIELIRAGIRTFDADAAQAPGRFNLF  726 (864)
T ss_pred             ccccceeeeccccCCcccchHHHHHHHHHHHHHc-----CCCHHHHHHHHHhccccccCCCCceEEE
Confidence                11134444445  89999999999999999     9999999999999965    99999865

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=6.3e-31  Score=262.33  Aligned_cols=205  Identities=26%  Similarity=0.349  Sum_probs=161.3

Q ss_pred             CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577           92 SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN  171 (353)
Q Consensus        92 ~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~  171 (353)
                      .+.++|+||||+|||||+.||++||+..| +|  +.||+..       +|.+|.|.+-                      
T Consensus       101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~-~v--~~t~gn~-------Nn~iGlPltl----------------------  148 (451)
T COG0770         101 FNAKVIAITGSNGKTTTKEMLAAILSTKG-KV--HATPGNF-------NNEIGLPLTL----------------------  148 (451)
T ss_pred             cCCcEEEEeCCCCcHHHHHHHHHHHhhcC-eE--ecCCCcc-------CccccchhHH----------------------
Confidence            46799999999999999999999999965 54  7788643       2457888762                      


Q ss_pred             CccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC-
Q 018577          172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-  250 (353)
Q Consensus       172 ~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-  250 (353)
                                     .....+.|++|+|+|+.+.++...+....+|+++|||||+.+|++.+| |.|.|+++|++|+.. 
T Consensus       149 ---------------l~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg-s~e~Ia~aK~Ei~~~~  212 (451)
T COG0770         149 ---------------LRLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGL  212 (451)
T ss_pred             ---------------HhCCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC-CHHHHHHHHHHHHhcc
Confidence                           234566999999999999999999998889999999999999999998 799999999999875 


Q ss_pred             ---CCceeecCchhHHHHHHHh----HHhcC----CCCcccceEEEeec-ceeeeee--eeeeeeCCCchHHHHHHHHHH
Q 018577          251 ---GRPVVSAYDAGIRATINGL----SMFND----RPCQSCDIIVQAER-DLKLSIE--LLDVKLCMIGNHQLHNALTAT  316 (353)
Q Consensus       251 ---g~~vv~~dd~~~~~~~~~~----~~~~~----~~~~~~d~~~~~~~-~~~~~~~--~~~~~l~l~G~hq~~Na~~Al  316 (353)
                         |..|+|.|++.......+.    ...++    .++...++.....+ .|.....  ...+++|++|+||+.|+++|+
T Consensus       213 ~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~  292 (451)
T COG0770         213 RPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAA  292 (451)
T ss_pred             CCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHH
Confidence               4568889888754443331    11222    12333333333222 1333222  236899999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHhcCCCCCccee
Q 018577          317 CAALCLRDQGGYLMLSYFLSGFREEHFWRAEIF  349 (353)
Q Consensus       317 aaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~  349 (353)
                      ++|+.+     |++.++|+++|+.+++.+||++
T Consensus       293 a~a~~l-----G~~~e~i~~~L~~~~~~~gR~~  320 (451)
T COG0770         293 ALALEL-----GLDLEEIAAGLKELKPVKGRLE  320 (451)
T ss_pred             HHHHHc-----CCCHHHHHHHHHhcCCCCccce
Confidence            999999     9999999999999999999998

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=3.9e-31  Score=265.20  Aligned_cols=196  Identities=20%  Similarity=0.189  Sum_probs=143.1

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||+.||++||+.+|++++.              .+|+|.|..                        
T Consensus       104 ~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~gnig~p~~------------------------  145 (438)
T PRK03806        104 QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGV--------------GGNIGLPAL------------------------  145 (438)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEE--------------eCCcchhHH------------------------
Confidence            357999999999999999999999999988764              223344321                        


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~  252 (353)
                                    .....+.|++|+|+|+.+. +.++.+.   |+++|||||++||+|+||+|+|+|+++|++|++...
T Consensus       146 --------------~~~~~~~~~~V~E~ss~~l-~~~~~~~---p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~  207 (438)
T PRK03806        146 --------------SLLDQECELYVLELSSFQL-ETTSSLK---AAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK  207 (438)
T ss_pred             --------------HhhccCCCEEEEEccchhh-ccCcccC---CCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCC
Confidence                          0224567999999998875 5666554   689999999999999997799999999999998644


Q ss_pred             -ceeecCchhHHHHHHHhH--HhcCCCCcccceEEEeecc--eeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577          253 -PVVSAYDAGIRATINGLS--MFNDRPCQSCDIIVQAERD--LKLSIE---LLDVKLCMIGNHQLHNALTATCAALCLRD  324 (353)
Q Consensus       253 -~vv~~dd~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~--~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~  324 (353)
                       .|+|.|||.+..+.....  ..++..  ..++.......  +.....   ...++++++|.||++|+++|++++..+  
T Consensus       208 ~~v~n~dd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l--  283 (438)
T PRK03806        208 VCVVNADDALTMPIRGADKRCVSFGVN--MGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAV--  283 (438)
T ss_pred             eEEEeCCCHHHHHHhcCCceEEEEecC--CCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHc--
Confidence             478889887655322110  011110  01221111011  111101   123578999999999999999999999  


Q ss_pred             cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          325 QGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                         +++.+.|+++|++|++|||||..+
T Consensus       284 ---gi~~~~i~~~L~~f~~~~gR~E~v  307 (438)
T PRK03806        284 ---GIPRASSLKALTTFTGLPHRFQLV  307 (438)
T ss_pred             ---CCCHHHHHHHHHhCCCCCCeEEEE
Confidence               999999999999999999999764

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=1.1e-30  Score=266.04  Aligned_cols=218  Identities=22%  Similarity=0.214  Sum_probs=153.0

Q ss_pred             ChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHH
Q 018577           76 DLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCL  155 (353)
Q Consensus        76 ~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~  155 (353)
                      ..+.+.++++.++++....++|+||||||||||++||++||+.+|+++++              .+|+|    +..+...
T Consensus       103 ~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gni~----~~~~~~~  164 (498)
T PRK02006        103 EIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAV--------------AGNIS----PAALDKL  164 (498)
T ss_pred             HHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEE--------------ECCCC----HHHHHHH
Confidence            45667777888888766668999999999999999999999999999875              22223    2111111


Q ss_pred             HHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhC--CCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhh
Q 018577          156 FHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQN--HVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAAL  233 (353)
Q Consensus       156 ~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~--~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~l  233 (353)
                      ..                              ....  ..|++|+|+++.+. +..+.+   +|+++|||||++||++++
T Consensus       165 ~~------------------------------~~~~~~~~~~~V~E~ss~~l-~~~~~~---~p~iaviTNI~~DHld~~  210 (498)
T PRK02006        165 ME------------------------------AIDAGALPDVWVLELSSFQL-ETTHTL---APDAATVLNITQDHLDWH  210 (498)
T ss_pred             HH------------------------------hhccCCCCcEEEEEccHHHh-Cccccc---CCCEEEEcCCChhhhccc
Confidence            00                              0112  24899999998764 344433   478999999999999999


Q ss_pred             CCCHHHHHHHHHhcccCC-CceeecCchhHHHHHHHhH----HhcCCCCc--ccceEEEeecc--eeeee----------
Q 018577          234 GGSLETIAMAKSGIIKYG-RPVVSAYDAGIRATINGLS----MFNDRPCQ--SCDIIVQAERD--LKLSI----------  294 (353)
Q Consensus       234 G~tle~ia~~Ka~Iik~g-~~vv~~dd~~~~~~~~~~~----~~~~~~~~--~~d~~~~~~~~--~~~~~----------  294 (353)
                      | |+|+|+.+|++|++++ ..|+|.|||.+..+.....    ..++....  ..++.......  +....          
T Consensus       211 g-s~e~y~~aK~~i~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (498)
T PRK02006        211 G-SMAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAP  289 (498)
T ss_pred             C-CHHHHHHHHHHHcCCCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecCCeEEEEecCccccccccc
Confidence            8 8999999999999864 4588999988766544321    11221100  00111110000  00000          


Q ss_pred             -----------------eee-eeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          295 -----------------ELL-DVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       295 -----------------~~~-~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                                       ... .++++++|.||++|+++|++++..+     |++.+.|+++|++|+++||||..+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~aL~~f~~~~gR~e~~  359 (498)
T PRK02006        290 SRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI-----GLPAAPLLHGLREYRGEPHRVELV  359 (498)
T ss_pred             ccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCceEEE
Confidence                             001 1468999999999999999999999     999999999999999999999764

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=8e-31  Score=263.52  Aligned_cols=200  Identities=20%  Similarity=0.188  Sum_probs=143.5

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||+.||+++|+.+|.++..              .+|+|.|++....                    
T Consensus       109 ~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~--------------~GniG~~~~~~~~--------------------  154 (445)
T PRK04308        109 GDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVI--------------AGNIGTPVLEAEL--------------------  154 (445)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEE--------------eCCccHHHHHHHH--------------------
Confidence            358999999999999999999999999987643              3456766642100                    


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~  252 (353)
                                    .-...+.|++|+|+|+++ +|.++.+   +|+++|||||++||+++|| |+|+|+.+|++|++++.
T Consensus       155 --------------~~~~~~~d~~VlE~~~~~-l~~~~~~---~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~  215 (445)
T PRK04308        155 --------------QREGKKADVWVLELSSFQ-LENTESL---RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDG  215 (445)
T ss_pred             --------------hhcCCCCcEEEEEeChHH-hCcCccc---CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCC
Confidence                          001346899999999754 4666655   4789999999999999997 99999999999998755


Q ss_pred             c-eeecCchhHHHHHHHhH--HhcCCCCcccceEEEeecc-eeeeee-e-eeeeeCCCchHHHHHHHHHHHHHHHHHhcC
Q 018577          253 P-VVSAYDAGIRATINGLS--MFNDRPCQSCDIIVQAERD-LKLSIE-L-LDVKLCMIGNHQLHNALTATCAALCLRDQG  326 (353)
Q Consensus       253 ~-vv~~dd~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~-~~~~~~-~-~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~  326 (353)
                      . |+|.||+.........+  ..++.. ...++....... +..... . ..++++++|.||++|+++|++++..+    
T Consensus       216 ~~i~n~dd~~~~~~~~~~~~v~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----  290 (445)
T PRK04308        216 VQVLNADDAFCRAMKRAGREVKWFSLE-HEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAV----  290 (445)
T ss_pred             EEEEeCCcHHHHHHhhcCCcEEEecCC-CCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHc----
Confidence            4 78888887654432110  011100 001111111011 111111 1 23578999999999999999999999    


Q ss_pred             CCCCHHHHHHHHhcCCCCCcceeec
Q 018577          327 GYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       327 ~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                       +++.+.|+++|++|.++||||..+
T Consensus       291 -gi~~~~i~~~L~~f~~~~~R~e~~  314 (445)
T PRK04308        291 -GLPREALLEHVKTFQGLPHRVEKI  314 (445)
T ss_pred             -CCCHHHHHHHHhhCCCCCCceEEE
Confidence             999999999999998899999764

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=8.1e-31  Score=264.26  Aligned_cols=202  Identities=20%  Similarity=0.197  Sum_probs=145.0

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||++||+++|+.+|+++..              .+|+|.|++....   +                
T Consensus       108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~--------------~gniG~~~~~~~~---~----------------  154 (459)
T PRK02705        108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPA--------------CGNIGYAACELAL---L----------------  154 (459)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE--------------ecccChhHHHHHh---h----------------
Confidence            458999999999999999999999999987654              2345766643110   0                


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~  252 (353)
                                   ......+.|++|+|+|++ .+|.++.+   +|+++|||||++||++++| |+|+|+.+|++|++++.
T Consensus       155 -------------~~~~~~~~d~~VlE~~s~-~l~~~~~~---~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~  216 (459)
T PRK02705        155 -------------RSGKAQKPDWIVAELSSY-QIESSPEL---APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSE  216 (459)
T ss_pred             -------------hhccCCCCCEEEEEcccc-ccccCccc---CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCC
Confidence                         001245789999999985 56666654   4789999999999999998 99999999999999865


Q ss_pred             c-eeecCchhHHHHHHHhHH--hcCCC-----CcccceEEEeecceeeeee--eee-eeeCCCchHHHHHHHHHHHHHHH
Q 018577          253 P-VVSAYDAGIRATINGLSM--FNDRP-----CQSCDIIVQAERDLKLSIE--LLD-VKLCMIGNHQLHNALTATCAALC  321 (353)
Q Consensus       253 ~-vv~~dd~~~~~~~~~~~~--~~~~~-----~~~~d~~~~~~~~~~~~~~--~~~-~~l~l~G~hq~~Na~~Alaaa~~  321 (353)
                      + |+|.||+.+..+......  .++..     ....+..... ....+...  ... .+++++|.||+.|+++|++++..
T Consensus       217 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~  295 (459)
T PRK02705        217 IRILNGDDPYLRQHRSSWPKGYWTSTQGKASLLGQADGWILE-EGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARL  295 (459)
T ss_pred             EEEEECCCHHHHHHHhcCCceEEeccCCccccccccceeEec-CCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHH
Confidence            5 778888877665432110  00000     0000001100 11111100  111 46899999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          322 LRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       322 l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +     +++.+.|.++|++|..|||||..+
T Consensus       296 l-----gv~~~~i~~~L~~f~~~~gR~e~~  320 (459)
T PRK02705        296 A-----GLSAEAIAEALRSFPGVPHRLERI  320 (459)
T ss_pred             c-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            9     999999999999999999999854

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=6.4e-31  Score=267.08  Aligned_cols=195  Identities=17%  Similarity=0.154  Sum_probs=142.2

Q ss_pred             cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (353)
Q Consensus        95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~  174 (353)
                      ++|+||||||||||+.||+++|+.+|+++.+              .+|+|.|+..                         
T Consensus       118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~--------------~GniG~p~~~-------------------------  158 (488)
T PRK03369        118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVL--------------CGNIGSPVLD-------------------------  158 (488)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHHcCCceEE--------------eCCCchHHHH-------------------------
Confidence            6999999999999999999999999987654              3556776621                         


Q ss_pred             ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCce
Q 018577          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPV  254 (353)
Q Consensus       175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~v  254 (353)
                                   ....+.|++|+|+|+.+. +   .+...+|+++|||||++||+|+|| |+|+|+.+|++|++.+..|
T Consensus       159 -------------~~~~~~~~~VlE~ss~ql-~---~~~~~~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~~~~V  220 (488)
T PRK03369        159 -------------VLDEPAELLAVELSSFQL-H---WAPSLRPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTGRVAV  220 (488)
T ss_pred             -------------hccCCCCEEEEECChHHh-C---cccccCCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcCCEEE
Confidence                         014578999999998764 2   234456899999999999999998 9999999999999976668


Q ss_pred             eecCchhHHHHHHHhHH--hcCCCCc---ccceEEEeecceee----eeee-eeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577          255 VSAYDAGIRATINGLSM--FNDRPCQ---SCDIIVQAERDLKL----SIEL-LDVKLCMIGNHQLHNALTATCAALCLRD  324 (353)
Q Consensus       255 v~~dd~~~~~~~~~~~~--~~~~~~~---~~d~~~~~~~~~~~----~~~~-~~~~l~l~G~hq~~Na~~Alaaa~~l~~  324 (353)
                      +|.||+....+......  .++....   ..++.+.....+..    .... ..++++++|.||++|+++|++++..+  
T Consensus       221 ln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~l--  298 (488)
T PRK03369        221 VGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAV--  298 (488)
T ss_pred             EECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHc--
Confidence            99999876554432110  0100000   00111110000000    0001 13578999999999999999999999  


Q ss_pred             cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          325 QGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                         |++.+.|+++|++|.+.|||+..+
T Consensus       299 ---Gi~~e~i~~~L~~f~~~~gR~E~v  322 (488)
T PRK03369        299 ---GVPAGAIADALASFRVGRHRAEVV  322 (488)
T ss_pred             ---CCCHHHHHHHHHhCCCCCCccEEE
Confidence               999999999999997779998764

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=99.97  E-value=4.4e-30  Score=257.21  Aligned_cols=196  Identities=22%  Similarity=0.230  Sum_probs=139.5

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||++||++||+.+|+++.+              .+|+|.|...                       
T Consensus       101 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~--------------~gnig~~~~~-----------------------  143 (433)
T TIGR01087       101 PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFL--------------GGNIGTPALE-----------------------  143 (433)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEE--------------ECccCHHHHH-----------------------
Confidence            358999999999999999999999999988643              2234544210                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC-
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG-  251 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g-  251 (353)
                                    .....+.|++|+|+|+.+. +.++.+   +|+++|||||++||+|++| |+|+|+++|++|++.. 
T Consensus       144 --------------~~~~~~~~~~V~E~~~~~l-~~~~~~---~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~  204 (433)
T TIGR01087       144 --------------VLDQEGAELYVLELSSFQL-ETTESL---RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQT  204 (433)
T ss_pred             --------------HHhccCCCEEEEEcChhHh-cCCccc---CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCC
Confidence                          0112568999999997654 455544   4789999999999999998 9999999999999863 


Q ss_pred             ---CceeecCchhHHHHHHHh-H--HhcCCCCcccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHhc
Q 018577          252 ---RPVVSAYDAGIRATINGL-S--MFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQ  325 (353)
Q Consensus       252 ---~~vv~~dd~~~~~~~~~~-~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~  325 (353)
                         ..|+|.||+.+....... +  ..++... ..+..+...... .......++++++|.||++|+++|++++..+   
T Consensus       205 ~~~~~i~n~dd~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l---  279 (433)
T TIGR01087       205 EGDVAVLNADDPRFARLAQKSKAQVIWFSVEK-DAERGLCIRDGG-LYLKPNDLEGSLLGLHNAENILAAIALAKSL---  279 (433)
T ss_pred             CCCEEEEECCCHHHHHhhhhcCceEEEEeCCc-cCCCceEEECCE-EEEeccccccCCCcHHHHHHHHHHHHHHHHc---
Confidence               458888887654433211 0  0111100 001001000000 0011113678999999999999999999999   


Q ss_pred             CCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          326 GGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       326 ~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                        |++.+.|+++|++|..+||||..+
T Consensus       280 --gi~~~~i~~~L~~f~g~~~R~e~v  303 (433)
T TIGR01087       280 --GLNLEAILEALRSFKGLPHRLEYV  303 (433)
T ss_pred             --CCCHHHHHHHHHhCCCCCCceEEE
Confidence              999999999999998899999764

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=4.3e-30  Score=258.66  Aligned_cols=196  Identities=18%  Similarity=0.162  Sum_probs=142.6

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||++||++||+.+|+++.+              .+|+|.|...                       
T Consensus       103 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GniG~p~l~-----------------------  145 (454)
T PRK01368        103 NLKFIAITGTNGKSTTTALISHILNSNGLDYPV--------------AGNIGVPALQ-----------------------  145 (454)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEE--------------EccCCHHHhc-----------------------
Confidence            457999999999999999999999999988654              3455665421                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--  250 (353)
                                      ...+.|++|+|+|+.+.. .   +...+|+++|||||++||+|+|| |+|+|+.+|..|++.  
T Consensus       146 ----------------~~~~~~~~VlE~ss~ql~-~---~~~~~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~  204 (454)
T PRK01368        146 ----------------AKASKDGYVLELSSFQLD-L---VKTFTAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMD  204 (454)
T ss_pred             ----------------ccCCCCEEEEEcCchhhc-c---ccccCCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCC
Confidence                            123469999999998862 2   23345899999999999999997 999999999999974  


Q ss_pred             --CCceeecCchhHHHHHHHhHH-------hcCCC-CcccceEEEeecc-eee--e-eeeeeeeeCCCchHHHHHHHHHH
Q 018577          251 --GRPVVSAYDAGIRATINGLSM-------FNDRP-CQSCDIIVQAERD-LKL--S-IELLDVKLCMIGNHQLHNALTAT  316 (353)
Q Consensus       251 --g~~vv~~dd~~~~~~~~~~~~-------~~~~~-~~~~d~~~~~~~~-~~~--~-~~~~~~~l~l~G~hq~~Na~~Al  316 (353)
                        +..|+|.||+.+..+......       .++.. ....++.+..... +..  . .....+.++++|.||++|+++|+
T Consensus       205 ~~~~~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAi  284 (454)
T PRK01368        205 KDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASY  284 (454)
T ss_pred             CCCEEEEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHH
Confidence              445899999877665432211       11110 0001111110000 011  0 01234667899999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          317 CAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       317 aaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +++..+     +++.+.|+++|++|.+|||||..+
T Consensus       285 a~~~~l-----gi~~~~i~~~L~~F~~~~~Rle~v  314 (454)
T PRK01368        285 AVAKII-----GVEPKKILESISSFQSLPHRMQYI  314 (454)
T ss_pred             HHHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence            999999     999999999999999999999764

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=99.97  E-value=7.6e-30  Score=256.74  Aligned_cols=198  Identities=19%  Similarity=0.199  Sum_probs=143.6

Q ss_pred             cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (353)
Q Consensus        95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~  174 (353)
                      ++|+||||||||||+.||+++|+.+|++++..+-.         ..+|+|.|..                          
T Consensus       103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~---------~~gn~G~~~~--------------------------  147 (448)
T TIGR01081       103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGG---------VPGNFGVSAR--------------------------  147 (448)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCc---------ccccCccccc--------------------------
Confidence            49999999999999999999999999987532100         0133454432                          


Q ss_pred             ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccc--cCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS--SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (353)
Q Consensus       175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~--~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--  250 (353)
                                     ..+.|++|+|+|+.+..+...+.+.  .+|+++|||||++||+++|+ |+|+|+.+|++|++.  
T Consensus       148 ---------------~~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~  211 (448)
T TIGR01081       148 ---------------LGESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVP  211 (448)
T ss_pred             ---------------cCCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCC
Confidence                           1247999999999987765544433  46899999999999999996 999999999999983  


Q ss_pred             --CCceeecCchhHHHHHHHhHH----hcCCCCcccceEE---Eeec-ceeeee---eeeeeeeCCCchHHHHHHHHHHH
Q 018577          251 --GRPVVSAYDAGIRATINGLSM----FNDRPCQSCDIIV---QAER-DLKLSI---ELLDVKLCMIGNHQLHNALTATC  317 (353)
Q Consensus       251 --g~~vv~~dd~~~~~~~~~~~~----~~~~~~~~~d~~~---~~~~-~~~~~~---~~~~~~l~l~G~hq~~Na~~Ala  317 (353)
                        +..|+|.||+.+...+...+.    .++..   .++..   .... .+.+..   ....++++++|.||+.|+++|++
T Consensus       212 ~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a  288 (448)
T TIGR01081       212 GEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQ---GEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIA  288 (448)
T ss_pred             CCCEEEEeCCCHHHHHHHHhccCCCeEEECCC---CCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHH
Confidence              334788898877665442221    01100   11111   1111 122211   11246789999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++..+     +++.+.++++|++|.++||||..+
T Consensus       289 ~~~~l-----gi~~~~i~~~L~~~~~~~~R~e~~  317 (448)
T TIGR01081       289 AARHV-----GVAIEDACEALGSFVNAKRRLELK  317 (448)
T ss_pred             HHHHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence            99999     899999999999998899999764

Alternate name: murein tripeptide ligase

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=4.8e-30  Score=257.51  Aligned_cols=194  Identities=17%  Similarity=0.159  Sum_probs=141.1

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||+.||+++|+.+|.+++.              .+|+|.|..                         
T Consensus       108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~gniG~~~~-------------------------  148 (438)
T PRK04663        108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAV--------------GGNIGVPAL-------------------------  148 (438)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEE--------------EcccCHHHH-------------------------
Confidence            47999999999999999999999999988754              233455431                         


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC-CC
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY-GR  252 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~-g~  252 (353)
                                   .....+.|++|+|+|+.+.. ..   ...+|+++|||||++||+|+|| |+|+|+++|.+|++. +.
T Consensus       149 -------------~~~~~~~~~~V~E~ss~~l~-~~---~~~~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~  210 (438)
T PRK04663        149 -------------DLLEQDAELYVLELSSFQLE-TT---SSLKLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAEL  210 (438)
T ss_pred             -------------hhhcCCCCEEEEEcChhhhc-cC---cccCCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCE
Confidence                         01235679999999998852 22   3345899999999999999997 999999999999985 55


Q ss_pred             ceeecCchhHHHHHHH-hHHhcCCCCcccceEEEeec--ceeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHHHhcC
Q 018577          253 PVVSAYDAGIRATING-LSMFNDRPCQSCDIIVQAER--DLKLSIE---LLDVKLCMIGNHQLHNALTATCAALCLRDQG  326 (353)
Q Consensus       253 ~vv~~dd~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~--~~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~  326 (353)
                      .|+|.||+........ ....++..  ..++......  .+.....   ...++++++|.||++|+++|++++..+    
T Consensus       211 ~v~n~dd~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l----  284 (438)
T PRK04663        211 AVVNRDDKQTYPDHAELQLVTFGFD--QQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAA----  284 (438)
T ss_pred             EEEeCCCHHHHhhhcCCcEEEEecC--CCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHc----
Confidence            6899999865432210 00112211  0011111111  1111111   124678999999999999999999999    


Q ss_pred             CCCCHHHHHHHHhcCCCCCcceeec
Q 018577          327 GYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       327 ~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                       |++.++|+++|++|++.|+||..+
T Consensus       285 -Gi~~~~i~~~L~~f~g~~~R~e~v  308 (438)
T PRK04663        285 -GVDYRKALDALKSYTGLTHRCQVV  308 (438)
T ss_pred             -CCCHHHHHHHHHhCCCCCCceEEe
Confidence             999999999999999899998754

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=1.2e-29  Score=254.90  Aligned_cols=198  Identities=19%  Similarity=0.160  Sum_probs=141.2

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||+.||+++|+.+|.++.+              .+|+|.|++..                      
T Consensus       107 ~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~--------------~Gnig~p~~~~----------------------  150 (447)
T PRK02472        107 EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALL--------------AGNIGYPASEV----------------------  150 (447)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEE--------------EcccChhhHHH----------------------
Confidence            357999999999999999999999999977643              33456665420                      


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~  252 (353)
                                    .-...+.|++|+|+++.+.. ..   ...+|+++|||||++||+++|| |+++|+.+|++|+++..
T Consensus       151 --------------~~~~~~~~~~V~E~ss~~~~-~~---~~~~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~  211 (447)
T PRK02472        151 --------------AQKATADDTLVMELSSFQLM-GI---ETFRPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQT  211 (447)
T ss_pred             --------------HhcCCCCCEEEEEcCchhhC-cc---cccCCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCC
Confidence                          00134579999999887753 22   3335789999999999999998 99999999999998654


Q ss_pred             ----ceeecCchhHHHHHHHhH---HhcCCCCcc-cceEEEeecceeeeee--eeeeeeCCCchHHHHHHHHHHHHHHHH
Q 018577          253 ----PVVSAYDAGIRATINGLS---MFNDRPCQS-CDIIVQAERDLKLSIE--LLDVKLCMIGNHQLHNALTATCAALCL  322 (353)
Q Consensus       253 ----~vv~~dd~~~~~~~~~~~---~~~~~~~~~-~d~~~~~~~~~~~~~~--~~~~~l~l~G~hq~~Na~~Alaaa~~l  322 (353)
                          .|+|.||+.+........   ..++..... .+.... ...+.....  ...++++++|.||++|+++|++++..+
T Consensus       212 ~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l  290 (447)
T PRK02472        212 EDDYLVINFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIK-DGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLL  290 (447)
T ss_pred             CCCEEEEeCCcHHHHHHHhhcCceEEEeecCCCCcCceEEE-CCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHc
Confidence                478888887654433211   011111000 001110 111111111  112368999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          323 RDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       323 ~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                           +++.+.|+++|++|++|||||..+
T Consensus       291 -----gi~~~~i~~~L~~f~~~~~R~e~~  314 (447)
T PRK02472        291 -----GVSNEAIREVLSTFSGVKHRLQYV  314 (447)
T ss_pred             -----CCCHHHHHHHHHhCCCCCCcceEE
Confidence                 999999999999998999999764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=8.9e-30  Score=255.99  Aligned_cols=197  Identities=22%  Similarity=0.243  Sum_probs=139.1

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||++||+++|+..|+.+++              .+++|.|+...                       
T Consensus       108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~--------------~g~ig~~~~~~-----------------------  150 (450)
T PRK14106        108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLV--------------AGNIGYPLIDA-----------------------  150 (450)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE--------------eCcccHHHHHH-----------------------
Confidence            68999999999999999999999999977653              23345554310                       


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC-
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR-  252 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~-  252 (353)
                                   .....+.|++|+|+|+.+..    .+...+|+++|||||+.||+++|| |+|+|+++|++|++.+. 
T Consensus       151 -------------~~~~~~~~~~v~E~~~~~~~----~~~~~~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~  212 (450)
T PRK14106        151 -------------VEEYGEDDIIVAEVSSFQLE----TIKEFKPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRP  212 (450)
T ss_pred             -------------HhcCCCCCEEEEEcChhhhc----cccccCCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCC
Confidence                         00123689999999887543    223445899999999999999998 99999999999998653 


Q ss_pred             ---ceeecCchhHHHHHHHh-H--HhcCCCCccc-ceEEEeecceeeeee------eeeeeeCCCchHHHHHHHHHHHHH
Q 018577          253 ---PVVSAYDAGIRATINGL-S--MFNDRPCQSC-DIIVQAERDLKLSIE------LLDVKLCMIGNHQLHNALTATCAA  319 (353)
Q Consensus       253 ---~vv~~dd~~~~~~~~~~-~--~~~~~~~~~~-d~~~~~~~~~~~~~~------~~~~~l~l~G~hq~~Na~~Alaaa  319 (353)
                         .++|.|++......... +  ..++...... +.... ...+.+...      ...++++++|.||++|+++|++++
T Consensus       213 ~~~~vln~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~  291 (450)
T PRK14106        213 SDYTVLNYDDPRTRSLAKKAKARVIFFSRKSLLEEGVFVK-NGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAA  291 (450)
T ss_pred             CCEEEEeCCcHHHHHHHhhcCceEEEEecCccCcCceEEE-CCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHH
Confidence               37788887654433221 0  0111110000 00000 111111110      012368999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          320 LCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       320 ~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +.|     |++.++|+++|++|.+|||||..+
T Consensus       292 ~~l-----gi~~~~i~~~L~~~~~~~gR~e~i  318 (450)
T PRK14106        292 YLL-----GISPDVIANTLKTFKGVEHRIEFV  318 (450)
T ss_pred             HHc-----CCCHHHHHHHHHhCCCCCcceEEE
Confidence            999     999999999999998899999875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.97  E-value=2.7e-29  Score=254.39  Aligned_cols=194  Identities=20%  Similarity=0.206  Sum_probs=139.5

Q ss_pred             cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (353)
Q Consensus        95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~  174 (353)
                      ++|+||||||||||+.||++||+.+|+++.+              ++|+|.|++..                        
T Consensus       122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gnig~p~~~~------------------------  163 (473)
T PRK00141        122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQA--------------VGNIGVPVSAA------------------------  163 (473)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEE--------------eccCChhHHHH------------------------
Confidence            6999999999999999999999999988764              34457666420                        


Q ss_pred             ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCce
Q 018577          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPV  254 (353)
Q Consensus       175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~v  254 (353)
                                  +....+.|++|+|+|+.+. +..   ...+|+++|||||+.||+|++| |+|+|+++|..+++.+..|
T Consensus       164 ------------l~~~~~~~~~V~E~ss~~l-~~~---~~~~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~~~~v  226 (473)
T PRK00141        164 ------------LVAQPRIDVLVAELSSFQL-HWS---PTLTPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRGPVAV  226 (473)
T ss_pred             ------------HhcCCCCCEEEEecCCccc-ccC---cccCCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhCCEEE
Confidence                        0124568999999999886 222   3345899999999999999997 9999999999999877789


Q ss_pred             eecCchhHHHHHHHhH----HhcCCCCcc-cceEEEeecceeee-----eee-eeeeeCCCchHHHHHHHHHHHHHHHHH
Q 018577          255 VSAYDAGIRATINGLS----MFNDRPCQS-CDIIVQAERDLKLS-----IEL-LDVKLCMIGNHQLHNALTATCAALCLR  323 (353)
Q Consensus       255 v~~dd~~~~~~~~~~~----~~~~~~~~~-~d~~~~~~~~~~~~-----~~~-~~~~l~l~G~hq~~Na~~Alaaa~~l~  323 (353)
                      +|.||+....+.....    ..++..-.. .++.+.. ......     ... ..+.++++|.||++|+++|++++..+ 
T Consensus       227 ln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~l-  304 (473)
T PRK00141        227 IGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRD-GELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQ-  304 (473)
T ss_pred             EECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEEC-CEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHc-
Confidence            9999987765543210    011110000 0000100 000000     001 12468899999999999999999999 


Q ss_pred             hcCCCCCHHHHHHHHhcCCCCCc-ceee
Q 018577          324 DQGGYLMLSYFLSGFREEHFWRA-EIFL  350 (353)
Q Consensus       324 ~~~~gi~~~~I~~gL~~~~~~pg-R~~~  350 (353)
                          +++.+.|+++|++|. ||+ |+..
T Consensus       305 ----gi~~~~i~~~l~~~~-~~~~R~e~  327 (473)
T PRK00141        305 ----GVAPEAIARALSSFE-VAGHRGQV  327 (473)
T ss_pred             ----CCCHHHHHHHHhhCC-CCCCceEE
Confidence                999999999999994 666 5543

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.96  E-value=2.9e-29  Score=253.80  Aligned_cols=195  Identities=21%  Similarity=0.154  Sum_probs=141.6

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||+.||++||+.+|.++.+              .+|+|.|+.+.                       
T Consensus       115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GniG~p~~~~-----------------------  157 (468)
T PRK04690        115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRTAL--------------VGNIGVPLLEV-----------------------  157 (468)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEE--------------cCCCCcchHHH-----------------------
Confidence            47999999999999999999999999987654              34567666320                       


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC--
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG--  251 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g--  251 (353)
                                   .-...+.|++|+|+++.+..+....  ..+|+++|||||++||+++|| ++++|..+|++|++..  
T Consensus       158 -------------~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~  221 (468)
T PRK04690        158 -------------LAPQPAPEYWAIELSSYQTGDVARS--GARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRP  221 (468)
T ss_pred             -------------hccCCCCcEEEEEecCCcccccccc--cCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCC
Confidence                         0113457999999999887655432  245899999999999999997 9999999999999764  


Q ss_pred             -CceeecCchhHHHHHHHhH--HhcCCCCcccceEEEeecceeeee---eeeeeeeCCCchHHHHHHHHHHHHHHHHHhc
Q 018577          252 -RPVVSAYDAGIRATINGLS--MFNDRPCQSCDIIVQAERDLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQ  325 (353)
Q Consensus       252 -~~vv~~dd~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~  325 (353)
                       ..|+|.||+.........+  ..++..   .+...  ...+....   ....+.++++|.||+.|+++|++++..+   
T Consensus       222 ~~~v~n~dd~~~~~~~~~~~~v~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~l---  293 (468)
T PRK04690        222 RIALLNAADPRLAALQLPDSEVVWFNHP---DGWHV--RGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEAL---  293 (468)
T ss_pred             CeEEEeCccHHHHHHhcCCCeEEEeeCC---cccee--cceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHc---
Confidence             4488999886543311000  001100   00000  00111110   1123568899999999999999999999   


Q ss_pred             CCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          326 GGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       326 ~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                        +++.+.|+++|++|.+|||||..+
T Consensus       294 --gi~~~~i~~~l~~~~~~~gR~e~~  317 (468)
T PRK04690        294 --GLDAVALAPAAAGFRPLPNRLQEL  317 (468)
T ss_pred             --CCCHHHHHHHHHhCCCCCCCcEEE
Confidence              899999999999998899999864

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

Probab=99.96  E-value=3.6e-29  Score=268.73  Aligned_cols=219  Identities=14%  Similarity=0.190  Sum_probs=155.7

Q ss_pred             HHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHH
Q 018577           79 RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHK  158 (353)
Q Consensus        79 r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~  158 (353)
                      .+.++.+.+ .++.+.++|+||||||||||+.||+++|+..|..++   ++.  +++     +++|.|.+.         
T Consensus        93 al~~la~~~-~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~---~~~--~~n-----~~ig~p~~~---------  152 (822)
T PRK11930         93 ALQELAAYH-RSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPR--SYN-----SQIGVPLSV---------  152 (822)
T ss_pred             HHHHHHHHH-HHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEec---CCc--ccC-----cchhHHHHH---------
Confidence            333333333 356678999999999999999999999998775432   332  111     233554421         


Q ss_pred             HHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHH
Q 018577          159 IKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLE  238 (353)
Q Consensus       159 i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle  238 (353)
                                                  .....++|++|+|+|+++..+...+....+|+++|||||+.||+++|| |+|
T Consensus       153 ----------------------------~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g-t~e  203 (822)
T PRK11930        153 ----------------------------WQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR-SIK  203 (822)
T ss_pred             ----------------------------hcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-CHH
Confidence                                        113567999999999988877766554456899999999999999997 999


Q ss_pred             HHHHHHHhcccCC-CceeecCchhHHHHHHHhH-----HhcCCCCcccceEEEe-----ec-ceeeee--eeeeeeeCCC
Q 018577          239 TIAMAKSGIIKYG-RPVVSAYDAGIRATINGLS-----MFNDRPCQSCDIIVQA-----ER-DLKLSI--ELLDVKLCMI  304 (353)
Q Consensus       239 ~ia~~Ka~Iik~g-~~vv~~dd~~~~~~~~~~~-----~~~~~~~~~~d~~~~~-----~~-~~~~~~--~~~~~~l~l~  304 (353)
                      +|+++|++|++.. ..|+|.||+....++....     ..++..-...++....     .. .+.+..  ....+++|++
T Consensus       204 ~y~~aK~~i~~~~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~  283 (822)
T PRK11930        204 QKIMEKLKLFKDCDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFEIPFI  283 (822)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEEecCC
Confidence            9999999999864 4588999987765543221     1122110011221111     11 122221  2246889999


Q ss_pred             chHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          305 GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       305 G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      |.||++|+++|++++..+     |++.+.|.++|++|.++||||..+
T Consensus       284 G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~  325 (822)
T PRK11930        284 DDASIENLIHCIAVLLYL-----GYSADQIQERMARLEPVAMRLEVK  325 (822)
T ss_pred             CHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCeeEEE
Confidence            999999999999999999     999999999999999999999764

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=99.96  E-value=1.2e-28  Score=248.90  Aligned_cols=196  Identities=19%  Similarity=0.207  Sum_probs=137.3

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||+.||++||+.+|++...+..-.         ++++|.+.                          
T Consensus       107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~---------~~~~~~~~--------------------------  151 (461)
T PRK00421        107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGI---------LNAAGTNA--------------------------  151 (461)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECce---------eccCCccc--------------------------
Confidence            3799999999999999999999999997533321100         11112211                          


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhccc---C
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK---Y  250 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik---~  250 (353)
                                     ...+.|++|+|+++....     +...+|+++|||||++||+++|| |+|+|+++|..+++   +
T Consensus       152 ---------------~~~~~~~~V~E~ss~q~~-----~~~~~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~  210 (461)
T PRK00421        152 ---------------RLGNSDYFVAEADESDRS-----FLKLHPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPF  210 (461)
T ss_pred             ---------------ccCCCCEEEEECCCccch-----HhhcCCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCC
Confidence                           123589999999977542     12345789999999999999998 99999988887654   3


Q ss_pred             -CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEE---ee-cc--eeeee--e-eeeeeeCCCchHHHHHHHHHHH
Q 018577          251 -GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQ---AE-RD--LKLSI--E-LLDVKLCMIGNHQLHNALTATC  317 (353)
Q Consensus       251 -g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~---~~-~~--~~~~~--~-~~~~~l~l~G~hq~~Na~~Ala  317 (353)
                       +..|+|.||+....+.....   ..++.. ...++...   .. ..  +.+..  . ...++++++|.||++|+++|++
T Consensus       211 ~~~~V~n~dd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a  289 (461)
T PRK00421        211 YGALVACGDDPELRELLPRVSRPVITYGFS-EDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIA  289 (461)
T ss_pred             CCEEEEECCCHHHHHHHHhcCCCEEEecCC-CCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHH
Confidence             55689999987766654321   011110 00122111   01 11  22111  1 1147789999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++..+     +++.+.|+++|++|..+||||..+
T Consensus       290 ~~~~l-----gv~~~~i~~~l~~f~~~~~R~e~~  318 (461)
T PRK00421        290 VALEL-----GIDDEAIREALATFKGVKRRFEEK  318 (461)
T ss_pred             HHHHc-----CCCHHHHHHHHHhCCCCCcccEEE
Confidence            99999     999999999999998999999764

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=1.5e-28  Score=241.74  Aligned_cols=198  Identities=23%  Similarity=0.243  Sum_probs=148.8

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      ...+|+|+||+||||||+||+++|.++|++++..-.--         +++.|.+.                         
T Consensus       106 ~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~---------~~~~g~na-------------------------  151 (459)
T COG0773         106 FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGI---------LKNFGTNA-------------------------  151 (459)
T ss_pred             CCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcc---------cccCCccc-------------------------
Confidence            46799999999999999999999999999887632210         01111111                         


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--  250 (353)
                                      .....+|.|+|+   ..+|...+  ..+|.++|||||+.||+|++| +++++.++...+++.  
T Consensus       152 ----------------~~g~~~~fV~EA---DEsD~sFl--~~~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp  209 (459)
T COG0773         152 ----------------RLGSGDYFVAEA---DESDSSFL--HYNPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVP  209 (459)
T ss_pred             ----------------ccCCCceEEEEe---cccccccc--cCCCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCC
Confidence                            123458999999   45555544  446899999999999999998 999999998887764  


Q ss_pred             --CCceeecCchhHHHHHHHhH----HhcCCCCcccceEEEe-----ec-ceeeee---eeeeeeeCCCchHHHHHHHHH
Q 018577          251 --GRPVVSAYDAGIRATINGLS----MFNDRPCQSCDIIVQA-----ER-DLKLSI---ELLDVKLCMIGNHQLHNALTA  315 (353)
Q Consensus       251 --g~~vv~~dd~~~~~~~~~~~----~~~~~~~~~~d~~~~~-----~~-~~~~~~---~~~~~~l~l~G~hq~~Na~~A  315 (353)
                        |..|+|.|||.+++++...+    ..+|.+-. .|+....     .+ .|.+..   ...++.++++|.||+.||++|
T Consensus       210 ~~G~~v~~~dd~~l~~l~~~~~~~~v~tyG~~~~-ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaa  288 (459)
T COG0773         210 FYGRAVVCGDDPNLRELLSRGCWSPVVTYGFDDE-ADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAA  288 (459)
T ss_pred             ccceEEEECCCHHHHHHHhcccCCcEEeecCCCc-CcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHH
Confidence              66799999999998777432    23443211 3333222     21 133332   356799999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeeccC
Q 018577          316 TCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMNG  353 (353)
Q Consensus       316 laaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~g  353 (353)
                      +++|..+     |++.++|+++|++| .+.+|||+++|
T Consensus       289 ia~a~~~-----Gi~~~~i~~aL~~F-~GvkRRfe~~g  320 (459)
T COG0773         289 IAVAREL-----GIDPEAIAEALASF-QGVKRRFELKG  320 (459)
T ss_pred             HHHHHHc-----CCCHHHHHHHHHhC-CCcceeeEEee
Confidence            9999999     99999999999999 78999999765

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.96  E-value=2.3e-28  Score=246.65  Aligned_cols=197  Identities=17%  Similarity=0.154  Sum_probs=139.0

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||+.||+++|+..|+++..              .+|+|.|+...                      
T Consensus       116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~--------------~gniG~p~~~~----------------------  159 (458)
T PRK01710        116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWV--------------GGNIGTPLFSN----------------------  159 (458)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEE--------------CCccChhHHHH----------------------
Confidence            458999999999999999999999999987642              23456665310                      


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--  250 (353)
                                    .....+.|++|+|+|+.+..+..     .+|+++|||||++||++++| |+|+|+++|..+++.  
T Consensus       160 --------------~~~~~~~~~~VlE~~~~~~~~~~-----~~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~  219 (458)
T PRK01710        160 --------------IEEIKEEDKVVLELSSFQLMTMD-----VSPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQS  219 (458)
T ss_pred             --------------HhhCCCCCEEEEEcCccccccCC-----CCCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCC
Confidence                          01123679999999998876442     35899999999999999997 999999999999863  


Q ss_pred             --CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEeecceeeee-e-eeeeeeCCCchHHHHHHHHHHHHHHHHH
Q 018577          251 --GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQAERDLKLSI-E-LLDVKLCMIGNHQLHNALTATCAALCLR  323 (353)
Q Consensus       251 --g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~-~-~~~~~l~l~G~hq~~Na~~Alaaa~~l~  323 (353)
                        +..|+|.||+....+.....   ..++..-...+..+.....+.... . ...++++++|.||++|+++|+++|..  
T Consensus       220 ~~~~~v~n~Dd~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~--  297 (458)
T PRK01710        220 ENDLLVLNKDNEITNGMEKEAKGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVND--  297 (458)
T ss_pred             CCCEEEEeCCcHHHHHHHhhcCCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHh--
Confidence              55689999987655432210   011110000000000001111110 1 12367899999999999999998864  


Q ss_pred             hcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          324 DQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       324 ~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                          .++.+.|.++|++|.+.+|||..+
T Consensus       298 ----~i~~~~i~~~L~~f~~~~~R~e~~  321 (458)
T PRK01710        298 ----DVSIESMKKVATTFSGVEHRCEFV  321 (458)
T ss_pred             ----CCCHHHHHHHHHhCCCCCcceEEE
Confidence                399999999999999899999754

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=99.96  E-value=4.1e-28  Score=264.59  Aligned_cols=208  Identities=21%  Similarity=0.223  Sum_probs=150.1

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||+.||+++|+.+|.+...+.+++.  ++     +.+|.|++.                       
T Consensus       602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn--~n-----~~~g~~~~l-----------------------  651 (958)
T PRK11929        602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGN--FN-----NEIGVPLTL-----------------------  651 (958)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcc--cC-----CCcchHHHH-----------------------
Confidence            568999999999999999999999999766556666542  11     223444320                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC--
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY--  250 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~--  250 (353)
                                    +-.+.+.|++|+|+|+++.++...+....+|+++|||||+.||+++|| |+|+|+++|++|++.  
T Consensus       652 --------------~~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~  716 (958)
T PRK11929        652 --------------LRLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALP  716 (958)
T ss_pred             --------------hcCCCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCC
Confidence                          112567899999999987766655444446899999999999999997 999999999999963  


Q ss_pred             --CCceeecCchhHHHHHHHh----HHhcCCCCcccceEEE---------eecc--eeeee--eeeeeeeCCCchHHHHH
Q 018577          251 --GRPVVSAYDAGIRATINGL----SMFNDRPCQSCDIIVQ---------AERD--LKLSI--ELLDVKLCMIGNHQLHN  311 (353)
Q Consensus       251 --g~~vv~~dd~~~~~~~~~~----~~~~~~~~~~~d~~~~---------~~~~--~~~~~--~~~~~~l~l~G~hq~~N  311 (353)
                        +..|+|.||+....+....    ...++..- ..++...         ....  +.+..  ....++++++|.||++|
T Consensus       717 ~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~N  795 (958)
T PRK11929        717 EDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQP-GADVYAEKIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRN  795 (958)
T ss_pred             CCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCC-CcceEeeecccceeecCCCceEEEEEECCceEEEEeCCCcHHHHHH
Confidence              4558899998765543321    11122110 0011110         0011  22211  22457899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          312 ALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       312 a~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +++|++++..+     |++.+.|.++|++|.++||||..+
T Consensus       796 alaAia~a~~l-----Gi~~~~i~~~L~~f~~~~gR~e~~  830 (958)
T PRK11929        796 ALAAIACALAA-----GASLKQIRAGLERFQPVAGRMQRR  830 (958)
T ss_pred             HHHHHHHHHHc-----CCCHHHHHHHHhhCCCCCCCceEE
Confidence            99999999999     999999999999999999999764

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=1.1e-27  Score=241.35  Aligned_cols=234  Identities=20%  Similarity=0.210  Sum_probs=167.3

Q ss_pred             HHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHH
Q 018577           81 NRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIK  160 (353)
Q Consensus        81 ~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~  160 (353)
                      ...+..+++|+.++++|+||||||||||++++.++++..|+++++..+-+-..     . .  |...             
T Consensus        78 ~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~-----~-~--~~~~-------------  136 (475)
T COG0769          78 TLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDEL-----S-P--GILE-------------  136 (475)
T ss_pred             HHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeec-----c-C--Cccc-------------
Confidence            34455688999889999999999999999999999999999999865432100     0 0  1111             


Q ss_pred             HHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHH
Q 018577          161 GVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETI  240 (353)
Q Consensus       161 ~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~i  240 (353)
                             ..+...|+.+++...  |.-+.++.++++|+|+++++.  ....+.....+++++||++.||+|+++ |+|+|
T Consensus       137 -------~~~~tTP~~~~l~~~--~~~~~d~~~e~~vmEvssh~l--~~~Rv~~~~f~v~~ftnls~DHlD~h~-t~e~Y  204 (475)
T COG0769         137 -------PTGLTTPEALDLQNL--LRDLLDRGAEIAVMEVSSHGL--VQGRVEGVTFDVGVFTNLSRDHLDYHG-TMEYY  204 (475)
T ss_pred             -------ccCCCCccHHHHHHH--HHHHHHcCCcEEEEEeehhHH--HhCCccCceEEEEeccccCchhhcccC-cHHHH
Confidence                   001223333333332  234678999999999999987  566666666789999999999999885 99999


Q ss_pred             HHHHHhccc----CCCceeecCchhHHHHHHHhH------HhcCCCCccc-----ceEEEeec-c--eeeeeeeeeeeeC
Q 018577          241 AMAKSGIIK----YGRPVVSAYDAGIRATINGLS------MFNDRPCQSC-----DIIVQAER-D--LKLSIELLDVKLC  302 (353)
Q Consensus       241 a~~Ka~Iik----~g~~vv~~dd~~~~~~~~~~~------~~~~~~~~~~-----d~~~~~~~-~--~~~~~~~~~~~l~  302 (353)
                      +..|..+|+    .+..|+|.||+..........      ..+++.....     ++.....+ .  +........+++|
T Consensus       205 ~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~  284 (475)
T COG0769         205 GAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELP  284 (475)
T ss_pred             HHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCCceeEecc
Confidence            999999985    244699999987633222111      1223221111     11211111 1  1122345678999


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeecc
Q 018577          303 MIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLMN  352 (353)
Q Consensus       303 l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~~  352 (353)
                      |+|.||++|+++|++++..+     |+|.+.|+++|+++++.||||+.+.
T Consensus       285 L~G~fNv~NaLaA~a~~~~l-----G~~~e~i~~~l~~~~~v~GRmE~v~  329 (475)
T COG0769         285 LPGLFNVYNALAAVAAALAL-----GVDLEDILAGLETLKPVPGRMELVN  329 (475)
T ss_pred             ccchhHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCCCcceEec
Confidence            99999999999999999999     9999999999999999999998875

>PRK14016 cyanophycin synthetase; Provisional

Probab=99.96  E-value=9.6e-28  Score=253.52  Aligned_cols=230  Identities=26%  Similarity=0.316  Sum_probs=155.2

Q ss_pred             HHHHHHHcCC--CCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHH
Q 018577           80 MNRLMDRLGN--PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFH  157 (353)
Q Consensus        80 ~~~~l~~lg~--p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~  157 (353)
                      -..+++.|-.  +..+.|+|+||||||||||++||+++|+.+|+++|+.+|+++...++.+..+....|.+         
T Consensus       464 ~~~Iid~L~~~~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s---------  534 (727)
T PRK14016        464 GEAIVDMLFPEGDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKS---------  534 (727)
T ss_pred             HHHHHHHhcccCCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHH---------
Confidence            3566666543  33467999999999999999999999999999999999987653333222110011111         


Q ss_pred             HHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhC-CC
Q 018577          158 KIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALG-GS  236 (353)
Q Consensus       158 ~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG-~t  236 (353)
                                                +..++...++|++|+|+|.++......  ...+|+++|||||+.||++++| +|
T Consensus       535 --------------------------~~~ll~~~~~d~aVlE~s~~~il~~gl--~~~~pdvaVvTNI~~DHL~~~~~~t  586 (727)
T PRK14016        535 --------------------------ARRVLMNPDVEAAVLETARGGILREGL--AYDRCDVGVVTNIGEDHLGLGGINT  586 (727)
T ss_pred             --------------------------HHHHhcCCCCCEEEEEcCCCchhhcCC--cccccCeEEEcCCCHHHhhccCCCC
Confidence                                      001245678999999999888753332  2335789999999999999886 79


Q ss_pred             HHHHHHHHHhcccC----CCceeecCchhHHHHHHHhH---HhcCC----CCccc-----ceEEEeec-ceeeee-----
Q 018577          237 LETIAMAKSGIIKY----GRPVVSAYDAGIRATINGLS---MFNDR----PCQSC-----DIIVQAER-DLKLSI-----  294 (353)
Q Consensus       237 le~ia~~Ka~Iik~----g~~vv~~dd~~~~~~~~~~~---~~~~~----~~~~~-----d~~~~~~~-~~~~~~-----  294 (353)
                      +|+|+.+|+.+++.    |..|+|+||+.+..+.....   ..++.    ++...     ...+.... .+.+..     
T Consensus       587 ~E~~~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~  666 (727)
T PRK14016        587 LEDLAKVKRVVVEAVKPDGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEI  666 (727)
T ss_pred             HHHHHHHHHHHHhhhCCCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcce
Confidence            99999999999863    56799999997766543210   01110    00000     00000000 000000     


Q ss_pred             ---eeeeeeeCCCc--hHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC----CCcceeec
Q 018577          295 ---ELLDVKLCMIG--NHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHF----WRAEIFLM  351 (353)
Q Consensus       295 ---~~~~~~l~l~G--~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~----~pgR~~~~  351 (353)
                         ...++.+.++|  .||++|+++|+++|+.+     |++.+.|+++|++|.+    .||||..+
T Consensus       667 ~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l-----Gi~~~~I~~~L~sF~~~~~~~pGR~n~~  727 (727)
T PRK14016        667 RIISLADIPLTLGGKAGFNIENALAAIAAAWAL-----GIDIELIRAGLRTFVSDAAQAPGRFNLF  727 (727)
T ss_pred             eeccccccceecCCcchhhHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcCCCccCCCcccccC
Confidence               01123443466  79999999999999999     9999999999999975    89999653

>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment

Probab=99.95  E-value=1.6e-27  Score=212.36  Aligned_cols=172  Identities=30%  Similarity=0.391  Sum_probs=115.1

Q ss_pred             EcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhH
Q 018577           99 IAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFE  178 (353)
Q Consensus        99 VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE  178 (353)
                      ||||||||||++||++||+++|+.++.+++-              +..+.                              
T Consensus         1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~--------------~~~~~------------------------------   36 (188)
T PF08245_consen    1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT--------------NNQIG------------------------------   36 (188)
T ss_dssp             EESSSSHHHHHHHHHHHHHHTTEEEEEESSC--------------HHHHH------------------------------
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCcccccccc--------------cchHH------------------------------
Confidence            8999999999999999999999888764310              01110                              


Q ss_pred             HHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC----CCce
Q 018577          179 VLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY----GRPV  254 (353)
Q Consensus       179 ~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~----g~~v  254 (353)
                        ....+....+.++|++|+|+|+++..+ ..+....+|+++|||||++||+++++ ++++|+++|+++++.    +..|
T Consensus        37 --~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v  112 (188)
T PF08245_consen   37 --LPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAV  112 (188)
T ss_dssp             --HHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEE
T ss_pred             --HHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEE
Confidence              011122334578999999999997766 33333256899999999999999995 999999999999984    4569


Q ss_pred             eecCchhHHHHHHHhH---HhcCCCCcccceE---EEe--ec-ceeee---eeeeeeeeCCCchHHHHHHHHHHHHH
Q 018577          255 VSAYDAGIRATINGLS---MFNDRPCQSCDII---VQA--ER-DLKLS---IELLDVKLCMIGNHQLHNALTATCAA  319 (353)
Q Consensus       255 v~~dd~~~~~~~~~~~---~~~~~~~~~~d~~---~~~--~~-~~~~~---~~~~~~~l~l~G~hq~~Na~~Alaaa  319 (353)
                      +|.|||.+........   ..++..-. .++.   +..  ++ .+.+.   ....+++++++|.||++|+++|+++|
T Consensus       113 ~n~dd~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a  188 (188)
T PF08245_consen  113 LNADDPELAEIAANSKCKVITFGLDNS-ADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA  188 (188)
T ss_dssp             EETTSHHHHHHHHHHTTTEEEEESSSS-SEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             ecCCCHHHHHHHHhcCCcEEEeccCcc-cceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence            9999996655554331   11221111 1211   111  11 12211   23456899999999999999999986

The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=99.95  E-value=2.6e-27  Score=238.31  Aligned_cols=198  Identities=21%  Similarity=0.255  Sum_probs=135.6

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||+.||++||+.+|++...+.            .++++.+....                       
T Consensus        99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~------------gg~~~~~~~~~-----------------------  143 (448)
T TIGR01082        99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVV------------GGLVKEAGTNA-----------------------  143 (448)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEE------------CcccccCCccc-----------------------
Confidence            3799999999999999999999999998433221            11223332210                       


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC---
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---  250 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~---  250 (353)
                                     .....|++|+|+++.+...     ...+|+++|||||++||+|++++|+|+|+.+|.+|++.   
T Consensus       144 ---------------~~~~~~~~V~E~s~~q~~~-----~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~  203 (448)
T TIGR01082       144 ---------------RLGSGEYLVAEADESDASF-----LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPF  203 (448)
T ss_pred             ---------------ccCCCCEEEEECCCccchH-----hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCC
Confidence                           1134699999999876532     23457899999999999994445999999999999974   


Q ss_pred             -CCceeecCchhHHHHHHHhH---HhcCCCCcccceEE---Eeec-c--eeeeee---eeeeeeCCCchHHHHHHHHHHH
Q 018577          251 -GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIV---QAER-D--LKLSIE---LLDVKLCMIGNHQLHNALTATC  317 (353)
Q Consensus       251 -g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~---~~~~-~--~~~~~~---~~~~~l~l~G~hq~~Na~~Ala  317 (353)
                       +..|+|.||+....+.....   ..++..-...++..   .... .  +.+...   ...++++++|.||++|+++|++
T Consensus       204 ~~~~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a  283 (448)
T TIGR01082       204 YGLAVICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIA  283 (448)
T ss_pred             CCEEEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHH
Confidence             34588999987765543210   01111100012211   1011 1  111111   1346789999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++..+     +++.+.|.++|++|.+.++||..+
T Consensus       284 ~~~~l-----gi~~~~i~~~l~~f~~~~~R~e~~  312 (448)
T TIGR01082       284 VALEL-----GIDFEAILRALANFQGVKRRFEIL  312 (448)
T ss_pred             HHHHc-----CCCHHHHHHHHHhCCCCCccceEE
Confidence            99999     999999999999997667777653

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=99.94  E-value=1.5e-26  Score=248.17  Aligned_cols=194  Identities=16%  Similarity=0.174  Sum_probs=138.1

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||++||++||+.+|+++..+..            |++|.++..                        
T Consensus       104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~g------------G~~g~~~~~------------------------  147 (809)
T PRK14573        104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIG------------GLNQEGLNG------------------------  147 (809)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEEC------------Ccccccccc------------------------
Confidence            37999999999999999999999999986433221            122554431                        


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC---
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---  250 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~---  250 (353)
                                     ...+.|++|+|+|+.. .+    +...+|+++|||||++||+|+|+.|+|+|+++|..+++.   
T Consensus       148 ---------------~~~~~d~~V~E~ss~~-~~----~~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~  207 (809)
T PRK14573        148 ---------------YSGSSEYFVAEADESD-GS----LKHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQ  207 (809)
T ss_pred             ---------------ccCCCCEEEEECCCCc-ch----hheeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCC
Confidence                           1234799999999874 22    224458999999999999999945999999999888753   


Q ss_pred             -CCceeecCchhHHHHHHHhHHhcCCCCcccceE---EEeecc---eeeee---eeeeeeeCCCchHHHHHHHHHHHHHH
Q 018577          251 -GRPVVSAYDAGIRATINGLSMFNDRPCQSCDII---VQAERD---LKLSI---ELLDVKLCMIGNHQLHNALTATCAAL  320 (353)
Q Consensus       251 -g~~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~---~~~~~---~~~~~~l~l~G~hq~~Na~~Alaaa~  320 (353)
                       +..|+|.||+.......  ...++... ..++.   +.....   +.+..   ....++++++|.||++|+++|++++.
T Consensus       208 ~~~~V~N~Dd~~~~~~~~--~~~~g~~~-~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~  284 (809)
T PRK14573        208 INKCFYNGDCPRLKGCLQ--GHSYGFSS-SCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIAL  284 (809)
T ss_pred             CCEEEEeCCCHHHHhhcc--cEEEccCC-CCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHH
Confidence             45689999986543221  11122110 01111   111111   22111   12357789999999999999999999


Q ss_pred             HHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          321 CLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       321 ~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      .+     +++.+.|+++|++|.+|||||..+
T Consensus       285 ~l-----gi~~~~i~~~L~~f~~~~~R~e~~  310 (809)
T PRK14573        285 TL-----GIDEGAIRNALKGFSGVQRRLERK  310 (809)
T ss_pred             Hc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence            99     999999999999998899999754

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.94  E-value=3.5e-26  Score=228.26  Aligned_cols=182  Identities=19%  Similarity=0.190  Sum_probs=128.1

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.++|+||||||||||+.||+++|+..|..+.+              .+|+|.|+..                       
T Consensus       101 ~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~--------------~GniG~p~l~-----------------------  143 (418)
T PRK00683        101 RYPSLGITGSTGKTTTILFLEHLLKRLGIPAFA--------------MGNIGIPILD-----------------------  143 (418)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHHHcCCCeEE--------------ECCcCHHHHH-----------------------
Confidence            357999999999999999999999999976654              4555665410                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~  252 (353)
                                      ...+.|++|+|+|+.+..+...  ..+.|+++|||||++||+|+|| |+|+|+++|+.|+..  
T Consensus       144 ----------------~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~--  202 (418)
T PRK00683        144 ----------------GMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKC--  202 (418)
T ss_pred             ----------------HhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHh--
Confidence                            1124789999999997754333  2233589999999999999997 999999999999863  


Q ss_pred             ceeecCchhHHHHHHHhHHhcCCCCcccceEEEeecc-eeeeeeeeeeeeCCCchHHHHHHHHHHHHHHH-HHhcCCCCC
Q 018577          253 PVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERD-LKLSIELLDVKLCMIGNHQLHNALTATCAALC-LRDQGGYLM  330 (353)
Q Consensus       253 ~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~-l~~~~~gi~  330 (353)
                       +.+.++...    .. ...++..     .. ..... +....  ....++++|.||++|+++|++++.. +     +++
T Consensus       203 -~~~~~~~~~----~~-~~~~~~~-----~~-~~~~~~~~~~~--~~~~~~~~g~hn~~Na~aA~a~~~~l~-----g~~  263 (418)
T PRK00683        203 -LRNPDDLWV----GD-ERSYGHS-----YL-EYVQEIMRLLD--KGSALKPLYLHDRYNYCAAYALANEVF-----PIS  263 (418)
T ss_pred             -hhCcccccc----cc-cCCcCce-----ee-cCcchhhhhhc--cccccCCCccchHHHHHHHHHHHHHhc-----CCC
Confidence             122222111    00 0011111     00 00000 00000  1135678999999999999999998 6     899


Q ss_pred             HHHHHHHHhcCCCCCcceeec
Q 018577          331 LSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       331 ~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      .++|+++|++|++|||||..+
T Consensus       264 ~~~i~~~l~~~~~~~~R~e~v  284 (418)
T PRK00683        264 EESFLEAVATFEKPPHRMEYL  284 (418)
T ss_pred             HHHHHHHHHhCCCCCCceEEE
Confidence            999999999999999999764

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=99.91  E-value=2.2e-23  Score=206.83  Aligned_cols=176  Identities=19%  Similarity=0.209  Sum_probs=120.9

Q ss_pred             cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (353)
Q Consensus        95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~  174 (353)
                      ++|+||||||||||+.||+++|+.+|..++                +|+|.|++.                         
T Consensus        90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~----------------gniG~p~~~-------------------------  128 (401)
T PRK03815         90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSG----------------GNIGTPLAE-------------------------  128 (401)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHHHCCCcEE----------------EEecHhHHh-------------------------
Confidence            589999999999999999999999984332                234665531                         


Q ss_pred             ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC----
Q 018577          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY----  250 (353)
Q Consensus       175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~----  250 (353)
                                    ...+.|++|+|+|+.+. +.+..+   +|+++|||||++||+|++| |+++|+++|..|++.    
T Consensus       129 --------------~~~~~~~~V~E~ss~~~-~~~~~~---~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~  189 (401)
T PRK03815        129 --------------LDKNAKIWVLETSSFTL-HYTNKA---KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEG  189 (401)
T ss_pred             --------------cCCCCCEEEEECChHHh-hCCccC---CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcC
Confidence                          13457999999987762 334333   4789999999999999997 999999999999874    


Q ss_pred             CCceeecCchhHHHHHHHhHHhcCCCCcccceEEEeecceeeeeeeeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCC
Q 018577          251 GRPVVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLM  330 (353)
Q Consensus       251 g~~vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~  330 (353)
                      +..|+|.||+....  ......++..   .++.    ..+.+.  .  -.+.+.+.| +.|+++|++++..+     |+ 
T Consensus       190 ~~~v~n~dd~~~~~--~~~~~~fg~~---~~~~----~~~~~~--~--~~~~~~~~~-~~NalaA~a~a~~~-----G~-  249 (401)
T PRK03815        190 DVAILPKKFKNTPT--KAQKIFYEDE---EDLA----EKFGID--S--EKINFKGPF-LLDALLALAVYKIL-----FD-  249 (401)
T ss_pred             CEEEEecccccccc--CCcEEEEecC---Cccc----cceeEe--h--HhcCCchHH-HHHHHHHHHHHHHh-----Cc-
Confidence            44588998875210  0000001100   0000    001110  0  123344554 99999999999999     64 


Q ss_pred             HHHHHHHHhcCCCCCcceeec
Q 018577          331 LSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       331 ~~~I~~gL~~~~~~pgR~~~~  351 (353)
                       +.+.++|++|++.++|+..+
T Consensus       250 -~~~~~~L~~f~~~~~R~e~~  269 (401)
T PRK03815        250 -ELDYERLNAFKIGKHKLEEF  269 (401)
T ss_pred             -HHHHHHHHhCCCCCceEEEE
Confidence             55778999998888888653

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.96  E-value=3.7e-05  Score=72.74  Aligned_cols=153  Identities=21%  Similarity=0.321  Sum_probs=90.1

Q ss_pred             HHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe----cCCcc--cccceeeeeCCCCcccCHHHH
Q 018577           81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHI--KTIRERMNVGRLNRPVSAKAL  152 (353)
Q Consensus        81 ~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~----tSp~l--~~~~eri~in~~G~~is~~~~  152 (353)
                      ++++..+-....+..+|+|||+  .||+|...-|..-|.+.|++|++.    +||.-  .-..+|++.+  .....+..|
T Consensus        38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~--~~~~~~~vF  115 (323)
T COG1703          38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ--RLAVDPGVF  115 (323)
T ss_pred             HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH--hhccCCCeE
Confidence            3555554433445679999998  789999999999999999999986    56631  1123444444  222111111


Q ss_pred             HHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEee-cCCCc-ccccccccccCCcEEEEccCChhhH
Q 018577          153 NCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGA-RDATNIISSSGLAASVITTIGEEHT  230 (353)
Q Consensus       153 ~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEv-G~gg~-~D~tn~v~~~~p~vaVITnI~~DHl  230 (353)
                      .+-          +  ...+.+.-.---|.-+...+...++|++++|+ |.|+- -|..+.++     +.+++.+.    
T Consensus       116 iRs----------~--~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aD-----t~~~v~~p----  174 (323)
T COG1703         116 IRS----------S--PSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMAD-----TFLVVMIP----  174 (323)
T ss_pred             Eee----------c--CCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcc-----eEEEEecC----
Confidence            100          0  11233444444455555667788999999998 66653 24444444     33333332    


Q ss_pred             hhhCCCHHHHHHHHHhcccCC-CceeecCch
Q 018577          231 AALGGSLETIAMAKSGIIKYG-RPVVSAYDA  260 (353)
Q Consensus       231 ~~lG~tle~ia~~Ka~Iik~g-~~vv~~dd~  260 (353)
                       -.|   +++-..|+|++.=+ ..|||..|.
T Consensus       175 -g~G---D~~Q~iK~GimEiaDi~vINKaD~  201 (323)
T COG1703         175 -GAG---DDLQGIKAGIMEIADIIVINKADR  201 (323)
T ss_pred             -CCC---cHHHHHHhhhhhhhheeeEeccCh
Confidence             134   33444589998864 458897653

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.79  E-value=1.6e-05  Score=73.94  Aligned_cols=157  Identities=22%  Similarity=0.322  Sum_probs=85.8

Q ss_pred             HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe----cCCcc--cccceeeeeCC----CCccc
Q 018577           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY----TSPHI--KTIRERMNVGR----LNRPV  147 (353)
Q Consensus        80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~----tSp~l--~~~~eri~in~----~G~~i  147 (353)
                      -+.+|+.+-....+..+|+|||+  .||+|...-|...|.+.|.+|++.    +||.-  .-..+|++.+.    .|..|
T Consensus        15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI   94 (266)
T PF03308_consen   15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI   94 (266)
T ss_dssp             HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred             HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence            45666665443446789999998  789999999999999999999986    56631  11223333320    01111


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEee-cCCCc-ccccccccccCCcEEEEccC
Q 018577          148 SAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEA-GLGGA-RDATNIISSSGLAASVITTI  225 (353)
Q Consensus       148 s~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEv-G~gg~-~D~tn~v~~~~p~vaVITnI  225 (353)
                      -.                +  ...+.+.-.--.|.-+...+...++|++++|+ |.|+- .|...+++.   .+-|++.=
T Consensus        95 RS----------------~--atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~---~v~v~~Pg  153 (266)
T PF03308_consen   95 RS----------------M--ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADT---VVLVLVPG  153 (266)
T ss_dssp             EE----------------E-----SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSE---EEEEEESS
T ss_pred             ee----------------c--CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCe---EEEEecCC
Confidence            00                0  00112222222333344456678999999998 77773 345555543   35666666


Q ss_pred             ChhhHhhhCCCHHHHHHHHHhcccC-CCceeecCc-hhHHHHHH
Q 018577          226 GEEHTAALGGSLETIAMAKSGIIKY-GRPVVSAYD-AGIRATIN  267 (353)
Q Consensus       226 ~~DHl~~lG~tle~ia~~Ka~Iik~-g~~vv~~dd-~~~~~~~~  267 (353)
                      .-|-++.+          |+||+.- ...|||..| +.+.....
T Consensus       154 ~GD~iQ~~----------KaGimEiaDi~vVNKaD~~gA~~~~~  187 (266)
T PF03308_consen  154 LGDEIQAI----------KAGIMEIADIFVVNKADRPGADRTVR  187 (266)
T ss_dssp             TCCCCCTB-----------TTHHHH-SEEEEE--SHHHHHHHHH
T ss_pred             CccHHHHH----------hhhhhhhccEEEEeCCChHHHHHHHH
Confidence            55666654          7888874 556889654 44444433

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=96.41  E-value=0.017  Score=57.45  Aligned_cols=53  Identities=23%  Similarity=0.364  Sum_probs=45.4

Q ss_pred             CCChHHHHHHHHHcCCCC-----CCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           74 GFDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        74 ~~~l~r~~~~l~~lg~p~-----~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.|+.+.++.+.++.+.     .+.++|+|+   |-.|||||+.-|++.|...|+||.+.
T Consensus        81 ~ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI  141 (387)
T PHA02519         81 GYTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI  141 (387)
T ss_pred             eEcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            388999999998887543     346899999   78899999999999999999999874

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=96.26  E-value=0.016  Score=57.80  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             eCCCccchhhhcccccc--cccccCCCCCccHHHHHHHHHhchhhhhcCCCCCCCCCC-CCCCChHHHHHHHHHcCCCC-
Q 018577           16 YSPTSRGYFKKFSIGSK--SCFFSTSSEEPELMNFMNYLDSLKNFEKSGVPKGAGTDS-DDGFDLGRMNRLMDRLGNPH-   91 (353)
Q Consensus        16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~-~~~~~l~r~~~~l~~lg~p~-   91 (353)
                      ++|..|..+..|++..-  .|-.   +     .+.+.|.+......... ....|... .-++.|+.++++++.++.+. 
T Consensus        29 ~~p~~~k~~r~~~i~e~A~~~gv---s-----~~tiR~ye~~gll~~~~-~~~~gr~~~~~~ftL~ei~~lr~~~~~~~~   99 (388)
T PRK13705         29 DSPEARKITRRWRIGEAADLVGV---S-----SQAIRDAEKAGRLPHPD-MEMRGRVEQRVGYTIEQINHMRDVFGTRLR   99 (388)
T ss_pred             CCCccccccCCCCHHHHHHHHCc---C-----HHHHHHHHHcCCCCCCC-cCCCCcchhhcCcCHHHHHHHHHhhccccc
Confidence            47999999888877432  2221   1     24455554433221100 00011100 11488999999988876543 


Q ss_pred             ----CCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           92 ----SKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        92 ----~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                          ...++|+|+   |-.|||||+.-|++.|...|+||.+.
T Consensus       100 r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI  141 (388)
T PRK13705        100 RAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV  141 (388)
T ss_pred             ccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence                346889999   88999999999999999999999875

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.22  E-value=0.056  Score=51.84  Aligned_cols=47  Identities=30%  Similarity=0.377  Sum_probs=39.0

Q ss_pred             HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.+++.+.......++|+|+|.  .||||++..+...|...|++++++
T Consensus        20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i   68 (300)
T TIGR00750        20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVI   68 (300)
T ss_pred             HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            46677777655556789999996  689999999999999999999875

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=96.04  E-value=0.031  Score=55.97  Aligned_cols=52  Identities=29%  Similarity=0.575  Sum_probs=40.4

Q ss_pred             CChHHHHHHHHHcCC-----------C----CCCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           75 FDLGRMNRLMDRLGN-----------P----HSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        75 ~~l~r~~~~l~~lg~-----------p----~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.++.+.++-+.++.           |    ..+.++|+|+   |-.|||||+.-|++.|...|+||.+.
T Consensus        87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI  156 (405)
T PRK13869         87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV  156 (405)
T ss_pred             ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence            666666666555531           2    2356899999   77899999999999999999999774

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.34  E-value=0.23  Score=48.42  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             HHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           81 NRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        81 ~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..+++.+-....+..+|+|+|.  .||||.+..+...|+..|+++++.
T Consensus        43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi   90 (332)
T PRK09435         43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVL   90 (332)
T ss_pred             HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            3455554322345679999998  589999999999999999999875

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=95.34  E-value=0.061  Score=54.62  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      ++.|-||||   .|||+++..|...|++.|++|+.|-.
T Consensus         3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~   40 (451)
T PRK01077          3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV   40 (451)
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence            456888887   46999999999999999999988743

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=94.61  E-value=0.44  Score=45.01  Aligned_cols=51  Identities=29%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             HHHHHHHcCCC-CCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCC--eEEecCCc
Q 018577           80 MNRLMDRLGNP-HSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYS--VGCYTSPH  130 (353)
Q Consensus        80 ~~~~l~~lg~p-~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~--vg~~tSp~  130 (353)
                      .+.++..|+.. ....-+|+|+|+  .||+||++.+..+|+..+-.  +-+++.-+
T Consensus        67 ~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG  122 (283)
T COG1072          67 FAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG  122 (283)
T ss_pred             HHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence            44555666644 334568999998  79999999999999998865  55555443

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=94.25  E-value=0.14  Score=50.88  Aligned_cols=36  Identities=31%  Similarity=0.483  Sum_probs=30.5

Q ss_pred             CCCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           91 HSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        91 ~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..+.++|.|+   |-.|||||+.-|+..|...|++|.+.
T Consensus       101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI  139 (387)
T TIGR03453       101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI  139 (387)
T ss_pred             CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            3456788887   56789999999999999999999764

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=94.14  E-value=0.12  Score=52.47  Aligned_cols=31  Identities=29%  Similarity=0.311  Sum_probs=26.2

Q ss_pred             EEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        97 I~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      |-||||   .|||+++..|...|++.|++|+.|-
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK   35 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFK   35 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence            345554   7999999999999999999999874

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=94.09  E-value=1.6  Score=42.15  Aligned_cols=154  Identities=19%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecCCc--ccccceeeeeCCCCcccCHHHHHH-HHHHHHHHHH
Q 018577           91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPH--IKTIRERMNVGRLNRPVSAKALNC-LFHKIKGVLD  164 (353)
Q Consensus        91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tSp~--l~~~~eri~in~~G~~is~~~~~~-~~~~i~~~~~  164 (353)
                      ..+.++|.|-||   .||=||+..|...+++.|+++++..+-.  +....+-+.++  -.   ..+|.. +++.      
T Consensus       145 k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgil~~~~gvvvd--av---~~DfaAGave~------  213 (339)
T COG3367         145 KVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGILIADDGVVVD--AV---VMDFAAGAVES------  213 (339)
T ss_pred             ccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceeeEEecCceEec--ch---hHHHHHHHHHH------
Confidence            345789999999   6999999999999999999998764421  11122222222  11   122211 1111      


Q ss_pred             HHHhhcCCccChhHHHHHHHHHHH-hhCCCCEEEEeecCCCccc-----ccccccccCCcEEEEccCChhhHhhhC----
Q 018577          165 EAIRLENGCITHFEVLTAMAFALF-AQNHVDIAVIEAGLGGARD-----ATNIISSSGLAASVITTIGEEHTAALG----  234 (353)
Q Consensus       165 ~~~~~~~~~~t~FE~~t~~a~~~f-~~~~~d~~VlEvG~gg~~D-----~tn~v~~~~p~vaVITnI~~DHl~~lG----  234 (353)
                                          ..+- .+.+.|++++|- -|...+     .+.++....|+. ++.-=.++|.-+.|    
T Consensus       214 --------------------~v~~~~e~~~Dii~VEG-Qgsl~HP~y~vtl~il~gs~PDa-vvL~H~P~r~~~~g~P~~  271 (339)
T COG3367         214 --------------------AVYEAEEKNPDIIFVEG-QGSLTHPAYGVTLGILHGSAPDA-VVLCHDPNRKYRDGFPEP  271 (339)
T ss_pred             --------------------HHHHhhhcCCCEEEEec-cccccCCCcccchhhhcCCCCCe-EEEEecCCCccccCCCCc
Confidence                                1122 235899999995 122111     223455556764 44444555544332    


Q ss_pred             -CCHHHHHHHHHhcccCCCc--eeec---CchhHHHHHHHhHHhcCCCC
Q 018577          235 -GSLETIAMAKSGIIKYGRP--VVSA---YDAGIRATINGLSMFNDRPC  277 (353)
Q Consensus       235 -~tle~ia~~Ka~Iik~g~~--vv~~---dd~~~~~~~~~~~~~~~~~~  277 (353)
                       +.++++..--.-+-...+.  ++|.   |++++++...+....++.|.
T Consensus       272 ip~leevi~l~e~l~~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~  320 (339)
T COG3367         272 IPPLEEVIALYELLSNAKVVGIALNTRNLDEEEARELCAKLEAEFGLPV  320 (339)
T ss_pred             CCCHHHHHHHHHHccCCcEEEEEecccccChHHHHHHHHHHhhccCCcc
Confidence             3666665543322222221  4443   45667777777766677553

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=93.97  E-value=0.067  Score=49.51  Aligned_cols=39  Identities=31%  Similarity=0.396  Sum_probs=35.9

Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCccccc
Q 018577           96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTI  134 (353)
Q Consensus        96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~  134 (353)
                      +|+|+|.-||||+..-|+.-|...|++|.+-||-|+.-.
T Consensus         1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~~P   39 (232)
T TIGR03172         1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMFLP   39 (232)
T ss_pred             CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCccccCC
Confidence            589999999999999999999999999999999988543

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=93.45  E-value=0.16  Score=45.49  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..+.++|.|+++   .||||++..|+..|...|++|.+.
T Consensus        14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI   52 (204)
T TIGR01007        14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI   52 (204)
T ss_pred             cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            344788999865   579999999999999999998763

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=93.02  E-value=0.26  Score=44.36  Aligned_cols=37  Identities=19%  Similarity=0.072  Sum_probs=30.9

Q ss_pred             CCCCCcEEEEc---CCCCchHHHHHHHHHHHH-cCCCeEEe
Q 018577           90 PHSKFKTVHIA---GTKGKGSTAAFLSSILRA-EGYSVGCY  126 (353)
Q Consensus        90 p~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~-~G~~vg~~  126 (353)
                      +....++|+|+   |--||||++..|+..|.. .|++|.+.
T Consensus        31 ~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv   71 (207)
T TIGR03018        31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI   71 (207)
T ss_pred             cCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence            44567899999   567999999999999986 69999764

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=92.89  E-value=0.22  Score=47.06  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=29.5

Q ss_pred             CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..++|.|+..   -|||||+..|+..|.+.|+||++.
T Consensus        56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli   92 (265)
T COG0489          56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL   92 (265)
T ss_pred             cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence            4567888754   689999999999999999999985

>COG2403 Predicted GTPase [General function prediction only]

Probab=92.22  E-value=0.45  Score=46.77  Aligned_cols=39  Identities=26%  Similarity=0.518  Sum_probs=34.2

Q ss_pred             CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecCCcc
Q 018577           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSPHI  131 (353)
Q Consensus        93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tSp~l  131 (353)
                      ..|+|.|+||   .|||+++++++++|++.||++..-.=|-+
T Consensus       125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmi  166 (449)
T COG2403         125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMI  166 (449)
T ss_pred             cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCce
Confidence            4589999998   79999999999999999999988766654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=92.02  E-value=1.9  Score=40.80  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +.++|.++|.  .|||||+.-|+..|...|++|++.+
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            4578888886  5899999999999999999998753

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK07667 uridine kinase; Provisional

Probab=91.74  E-value=0.4  Score=42.76  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=35.1

Q ss_pred             HHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577           85 DRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (353)
Q Consensus        85 ~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~  130 (353)
                      +.+..-..+..+|+|+|-  .||||++..|...|...|.++..+....
T Consensus         8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd   55 (193)
T PRK07667          8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD   55 (193)
T ss_pred             HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            444333334479999995  8999999999999999999887765543

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.71  E-value=0.61  Score=46.12  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=27.9

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..||-+.|-  .||||||.-++..++..||++++.+
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc  136 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC  136 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEe
Confidence            346666664  4799999999999999999999854

>cd03114 ArgK-like The function of this protein family is unkown

Probab=90.86  E-value=2.4  Score=36.17  Aligned_cols=30  Identities=33%  Similarity=0.469  Sum_probs=24.7

Q ss_pred             EEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      |++.|-  .||||++..+...+.+.|.++.++
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii   33 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVL   33 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            455554  689999999999999999998764

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK15453 phosphoribulokinase; Provisional

Probab=90.86  E-value=0.36  Score=46.02  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.++|+|||+  .||||++..++.+|...|.++.+.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi   39 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVV   39 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEE
Confidence            45689999998  689999999999999877665443

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=90.78  E-value=1.2  Score=45.07  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.0

Q ss_pred             EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      .|-||||   .|||+++..|.+.|+..|++|..|-
T Consensus         3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K   37 (433)
T PRK13896          3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAK   37 (433)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEe
Confidence            4566665   7999999999999999999997763

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=90.65  E-value=0.37  Score=36.48  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             EEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           97 VHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        97 I~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      |.|+|.  .||||++..++..|++.|+++.++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            556655  6999999999999999999997743

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=90.32  E-value=0.38  Score=42.03  Aligned_cols=37  Identities=32%  Similarity=0.462  Sum_probs=32.0

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~  130 (353)
                      .++++|+|.  .||||...-|-..|++.||+|+..-..|
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h   40 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH   40 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence            479999997  6999999999999999999998864443

>PRK06761 hypothetical protein; Provisional

Probab=90.32  E-value=6.6  Score=37.44  Aligned_cols=68  Identities=22%  Similarity=0.296  Sum_probs=46.8

Q ss_pred             cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 018577           95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA  166 (353)
Q Consensus        95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~  166 (353)
                      ++|.|+|  -.||||++..|+.-|...|+++..+.-+......+-  .+  +..++++++...+.+.....+.+
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~--~~~~~~eer~~~l~~~~~f~~~l   73 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DG--VACFTKEEFDRLLSNYPDFKEVL   73 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--cc--ccCCCHHHHHHHHHhhhHHHHHH
Confidence            5788888  479999999999999988998877544322111121  13  55678888888887777644433

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=90.28  E-value=1.1  Score=43.43  Aligned_cols=35  Identities=26%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +..+|++.|-  .|||||+..|+..|...|++|.+.+
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~  149 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA  149 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence            3567888886  5799999999999999999998743

>PRK14974 cell division protein FtsY; Provisional

Probab=90.04  E-value=2.6  Score=41.26  Aligned_cols=35  Identities=31%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +..+|.++|.  .|||||++.++..|...|++|++.+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~  175 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA  175 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            3568999997  5799999999999999999998743

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=90.03  E-value=0.68  Score=43.40  Aligned_cols=49  Identities=16%  Similarity=0.066  Sum_probs=38.6

Q ss_pred             HHHHHHHHHcCC--CCCCCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           78 GRMNRLMDRLGN--PHSKFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        78 ~r~~~~l~~lg~--p~~~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.++.+...+..  .....++|.||   |--||||++..|+..|...|++|.+.
T Consensus        85 e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI  138 (274)
T TIGR03029        85 EALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI  138 (274)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            556666666543  34567899999   56799999999999999999999763

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=89.94  E-value=0.93  Score=45.48  Aligned_cols=31  Identities=39%  Similarity=0.465  Sum_probs=25.2

Q ss_pred             EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      -|.|+||   .||||++.-|-..|+..|++|--|
T Consensus         2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf   35 (451)
T COG1797           2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF   35 (451)
T ss_pred             ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence            3667776   699999999999999998776443

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=89.88  E-value=1.7  Score=46.66  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=27.3

Q ss_pred             EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      .|-|+||   .|||+++.-|.+.|++.|++||.|-
T Consensus         4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK   38 (684)
T PRK05632          4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK   38 (684)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence            3555554   7999999999999999999999875

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

Probab=89.78  E-value=0.83  Score=44.40  Aligned_cols=50  Identities=22%  Similarity=0.430  Sum_probs=39.6

Q ss_pred             HHHHHHHHHcCCCCCCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577           78 GRMNRLMDRLGNPHSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        78 ~r~~~~l~~lg~p~~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ...++.+.+.|...-..|||.|    .|-+|||-++-.|+.-|++.|+++|.++
T Consensus        31 ~~~r~~~~~~g~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS   84 (336)
T COG1663          31 AGLRRKLAKKGSYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS   84 (336)
T ss_pred             HHHHHHHhccccccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEe
Confidence            4456666666634456788876    6999999999999999999999999863

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=89.06  E-value=0.52  Score=40.03  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=25.9

Q ss_pred             cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      |+|+|.|-  .||||.+..|-..|...|++++.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i   34 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI   34 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence            57888885  699999999999999999999965

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=89.06  E-value=2.8  Score=38.28  Aligned_cols=31  Identities=32%  Similarity=0.330  Sum_probs=26.1

Q ss_pred             EEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        96 vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +|+|+   |-.||||++.-|+..|.+.|++|.+.
T Consensus         2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli   35 (251)
T TIGR01969         2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL   35 (251)
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            44444   56899999999999999999999875

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=89.03  E-value=0.56  Score=44.04  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             cEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY-TSPH  130 (353)
Q Consensus        95 ~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~-tSp~  130 (353)
                      ++|+|+  |--|||||+.-|+..|.+.|+||.+. .-|+
T Consensus         2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq   40 (273)
T PRK13232          2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPK   40 (273)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccc
Confidence            567776  45789999999999999999999876 4443

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=88.92  E-value=0.88  Score=44.27  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             CCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           92 SKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        92 ~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ...|+|.|    .|-.|||.++.+|+..|++.|++++..
T Consensus        47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il   85 (325)
T PRK00652         47 APVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV   85 (325)
T ss_pred             CCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence            35689998    899999999999999999999999875

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=88.63  E-value=0.61  Score=42.06  Aligned_cols=35  Identities=31%  Similarity=0.341  Sum_probs=27.9

Q ss_pred             EEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577           96 TVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY-TSPH  130 (353)
Q Consensus        96 vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~  130 (353)
                      +|+|+|  -.||||++..|+..|.+.|++|.+. .-|+
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q   39 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK   39 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            466664  5789999999999999999999764 4443

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=88.31  E-value=5.6  Score=35.98  Aligned_cols=27  Identities=33%  Similarity=0.271  Sum_probs=23.9

Q ss_pred             CCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577          101 GTKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus       101 GTnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      |-.||||++..++..+.+.|++|.++.
T Consensus         8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~   34 (217)
T cd02035           8 GGVGKTTIAAATAVRLAEEGKKVLLVS   34 (217)
T ss_pred             CCchHHHHHHHHHHHHHHCCCcEEEEE
Confidence            447999999999999999999998763

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=88.07  E-value=1.7  Score=34.18  Aligned_cols=30  Identities=30%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577           96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGC  125 (353)
Q Consensus        96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~  125 (353)
                      +++--|.-||||++..++..|.+.|.+|.+
T Consensus         4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~   33 (104)
T cd02042           4 VANQKGGVGKTTTAVNLAAALARRGKRVLL   33 (104)
T ss_pred             EEeCCCCcCHHHHHHHHHHHHHhCCCcEEE
Confidence            345567889999999999999999988876

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=87.97  E-value=0.7  Score=42.52  Aligned_cols=33  Identities=39%  Similarity=0.643  Sum_probs=29.9

Q ss_pred             CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.+-||||   -|||.+++.|.+.|+.+|++++.|
T Consensus         2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~   37 (223)
T COG0132           2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY   37 (223)
T ss_pred             CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence            367899999   599999999999999999999876

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=87.96  E-value=4.7  Score=36.20  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=24.2

Q ss_pred             EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      +|.+.|-  .|||||++=|++.+...|.+|++.+.
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~   37 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA   37 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred             EEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence            4444443  58999999999999988999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=87.45  E-value=4.4  Score=40.96  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=29.3

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..+|.++|-  .|||||+.-|+..|+..|++|++.+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~  135 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC  135 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence            468888885  6899999999999999999998753

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=87.21  E-value=0.85  Score=45.05  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             CCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           90 PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        90 p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +..+.++|+|+|.  .||||...-|-..|++.|++|+..-
T Consensus       201 ~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK  240 (366)
T PRK14489        201 TTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK  240 (366)
T ss_pred             cCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence            3346789999995  7999999999999999999999864

>COG4240 Predicted kinase [General function prediction only]

Probab=87.20  E-value=1.2  Score=41.13  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=29.2

Q ss_pred             CCcEEEEcCC--CCchHHHHHHHHHHHHcC-CCeEEe
Q 018577           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEG-YSVGCY  126 (353)
Q Consensus        93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G-~~vg~~  126 (353)
                      +.-+++|.|.  .||||++..|..+|.+.| ++|+.+
T Consensus        49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l   85 (300)
T COG4240          49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL   85 (300)
T ss_pred             CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence            3468999997  789999999999999998 688764

>PRK05439 pantothenate kinase; Provisional

Probab=86.63  E-value=1.7  Score=42.03  Aligned_cols=36  Identities=31%  Similarity=0.277  Sum_probs=28.5

Q ss_pred             CCcEEEEcCC--CCchHHHHHHHHHHHHc--CCCeEEecC
Q 018577           93 KFKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCYTS  128 (353)
Q Consensus        93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~--G~~vg~~tS  128 (353)
                      ...+|+|||+  .||||++..|..+|...  |.+|.+.+-
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~  124 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTT  124 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEec
Confidence            3468999997  78999999999999864  567766443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=86.47  E-value=1.1  Score=39.18  Aligned_cols=43  Identities=28%  Similarity=0.543  Sum_probs=35.5

Q ss_pred             cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCCccccccee
Q 018577           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRER  137 (353)
Q Consensus        95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~er  137 (353)
                      --|+|||-  .||||.+.-|+..|+..||++|=|-+|.+-.-..|
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR   50 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR   50 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE
Confidence            35999996  78999999999999999999988877766544444

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=86.39  E-value=8.5  Score=39.04  Aligned_cols=34  Identities=32%  Similarity=0.480  Sum_probs=28.7

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..+|.++|-  .|||||+.-|+..|...|++|++.+
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~  130 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA  130 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence            457777775  6899999999999999999998743

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=86.38  E-value=1  Score=41.58  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSP  129 (353)
Q Consensus        94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp  129 (353)
                      +++|.|+|  -.||||++.-|...|+..|++|+..-..
T Consensus         1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~   38 (229)
T PRK14494          1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHT   38 (229)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            36899999  6899999999999999999999987543

>PRK06696 uridine kinase; Validated

Probab=86.36  E-value=1.6  Score=39.70  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             HHHHHHHHHcCC-CCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577           78 GRMNRLMDRLGN-PHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC  125 (353)
Q Consensus        78 ~r~~~~l~~lg~-p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~  125 (353)
                      +.+.++.+.+.. ......+|+|+|-  .||||.+..|+..|...|..+..
T Consensus         5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~   55 (223)
T PRK06696          5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR   55 (223)
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            344555555432 2234579999994  89999999999999988876654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=85.99  E-value=0.59  Score=41.56  Aligned_cols=27  Identities=37%  Similarity=0.503  Sum_probs=24.5

Q ss_pred             EEEEcC--CCCchHHHHHHHHHHHHcCCC
Q 018577           96 TVHIAG--TKGKGSTAAFLSSILRAEGYS  122 (353)
Q Consensus        96 vI~VtG--TnGKtSTt~ml~~IL~~~G~~  122 (353)
                      +|+|+|  ..||||++..|..+|.+.|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~   29 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence            689998  489999999999999998877

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=85.89  E-value=0.71  Score=42.92  Aligned_cols=27  Identities=33%  Similarity=0.307  Sum_probs=24.5

Q ss_pred             cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577          100 AGTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus       100 tGTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      -|-.||||+|.-|++.|...|+||.+.
T Consensus         9 KGGvGKTT~~~nLA~~La~~G~kVlli   35 (270)
T cd02040           9 KGGIGKSTTTQNLSAALAEMGKKVMIV   35 (270)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            567899999999999999999999874

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=85.67  E-value=1  Score=39.28  Aligned_cols=31  Identities=29%  Similarity=0.216  Sum_probs=26.1

Q ss_pred             EEEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           96 TVHIAGTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        96 vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.+.-|-.||||++..|+..|...|++|.+.
T Consensus         3 v~~~kGG~GKTt~a~~la~~la~~g~~Vlli   33 (195)
T PF01656_consen    3 VTSGKGGVGKTTIAANLAQALARKGKKVLLI   33 (195)
T ss_dssp             EEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred             EEcCCCCccHHHHHHHHHhcccccccccccc
Confidence            4556678899999999999999999999874

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=85.57  E-value=0.98  Score=40.18  Aligned_cols=32  Identities=38%  Similarity=0.582  Sum_probs=27.8

Q ss_pred             cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.|-|+||   .|||+++..|.+.|++.|.++|.|
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~   35 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYF   35 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence            35677777   699999999999999999999976

...

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=85.53  E-value=1  Score=42.70  Aligned_cols=32  Identities=16%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +|+|||.  .||||++.-+.++|...|.++.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~   34 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE   34 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence            5899997  6899999999999999898876653

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=85.33  E-value=1  Score=41.50  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=28.0

Q ss_pred             cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.||   |--|||||++-|...|...|.||.+.
T Consensus         3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li   37 (272)
T COG2894           3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI   37 (272)
T ss_pred             eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence            567777   67899999999999999999999774

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=85.29  E-value=1.1  Score=41.04  Aligned_cols=32  Identities=28%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|+|++   -.||||++..|+..|...|++|.+.
T Consensus         2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli   36 (261)
T TIGR01968         2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI   36 (261)
T ss_pred             eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence            4677765   5789999999999999999999875

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=84.99  E-value=1.2  Score=40.64  Aligned_cols=32  Identities=34%  Similarity=0.361  Sum_probs=27.4

Q ss_pred             cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|++   -.||||++.-|+..|...|++|.+.
T Consensus         2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli   36 (246)
T TIGR03371         2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI   36 (246)
T ss_pred             cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence            5677765   6799999999999999999999774

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=84.73  E-value=6.7  Score=39.55  Aligned_cols=86  Identities=15%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN  171 (353)
Q Consensus        94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~  171 (353)
                      ..+|-..|  -.||||||.=|+.-|+..|++|++-+.-               . .-+    .++++++...+...-+-.
T Consensus       100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD---------------~-~Rp----AA~eQL~~La~q~~v~~f  159 (451)
T COG0541         100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD---------------T-YRP----AAIEQLKQLAEQVGVPFF  159 (451)
T ss_pred             CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecc---------------c-CCh----HHHHHHHHHHHHcCCcee
Confidence            34566666  3799999999999999999999884321               1 111    234555544444322111


Q ss_pred             ---CccChhHHHHHHHHHHHhhCCCCEEEEee
Q 018577          172 ---GCITHFEVLTAMAFALFAQNHVDIAVIEA  200 (353)
Q Consensus       172 ---~~~t~FE~~t~~a~~~f~~~~~d~~VlEv  200 (353)
                         ..-+..|+ .--|+..+.+..+|++++-+
T Consensus       160 ~~~~~~~Pv~I-ak~al~~ak~~~~DvvIvDT  190 (451)
T COG0541         160 GSGTEKDPVEI-AKAALEKAKEEGYDVVIVDT  190 (451)
T ss_pred             cCCCCCCHHHH-HHHHHHHHHHcCCCEEEEeC
Confidence               12234442 33456677778888888887

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=84.72  E-value=3.7  Score=37.99  Aligned_cols=32  Identities=34%  Similarity=0.393  Sum_probs=26.9

Q ss_pred             cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.++   |-.||||.+.+|++.|.+.|.+|.++
T Consensus         2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lI   36 (231)
T PF07015_consen    2 PVITFASSKGGAGKTTAAMALASELAARGARVALI   36 (231)
T ss_pred             CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            445444   66799999999999999999999886

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=84.72  E-value=2.7  Score=40.50  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHHcC-CCCCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           76 DLGRMNRLMDRLG-NPHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        76 ~l~r~~~~l~~lg-~p~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +-+.+..++.++. .+....++|+|+|.   -||||++.-|+..|...|++|.+.
T Consensus        74 ~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv  128 (322)
T TIGR03815        74 AEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV  128 (322)
T ss_pred             CHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence            4455566666664 34456788988875   689999999999999999999774

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PRK00784 cobyric acid synthase; Provisional

Probab=84.72  E-value=1  Score=46.27  Aligned_cols=33  Identities=36%  Similarity=0.555  Sum_probs=29.3

Q ss_pred             cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus         3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K   38 (488)
T PRK00784          3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK   38 (488)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence            45788887   8999999999999999999998764

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=84.35  E-value=0.97  Score=39.91  Aligned_cols=25  Identities=36%  Similarity=0.571  Sum_probs=19.9

Q ss_pred             cEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSV  123 (353)
Q Consensus        95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v  123 (353)
                      +.|+||||  .||||+|..|+    ..|+++
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~   27 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR----ELGYKV   27 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH----HhCCce
Confidence            36999999  68999999887    446665

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=83.97  E-value=1.4  Score=38.06  Aligned_cols=32  Identities=31%  Similarity=0.497  Sum_probs=26.9

Q ss_pred             EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +|+|+|.  .||||++..|...|+..|++|+..-
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK   34 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK   34 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            4677774  6899999999999999999998863

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=83.78  E-value=1.8  Score=37.60  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=28.7

Q ss_pred             cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|+|.|  -.||||.+..|...|...|++++..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i   35 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI   35 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence            6899999  4799999999999999999999875

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK10037 cell division protein; Provisional

Probab=83.71  E-value=1.5  Score=40.59  Aligned_cols=32  Identities=25%  Similarity=0.198  Sum_probs=27.1

Q ss_pred             cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|+|+   |-.||||++.-|+..|.+.|+||.+.
T Consensus         2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI   36 (250)
T PRK10037          2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI   36 (250)
T ss_pred             cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence            456665   55789999999999999999999874

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=83.69  E-value=1.5  Score=38.68  Aligned_cols=32  Identities=38%  Similarity=0.405  Sum_probs=27.3

Q ss_pred             EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      +|+|+|.  .||||.+..|...|...|.++..+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~   34 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS   34 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            4788886  7999999999999999888877653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=83.45  E-value=1.5  Score=40.13  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=27.1

Q ss_pred             EEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           96 TVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        96 vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .|-||||   .|||+++..|.+.|++.|++++.|
T Consensus         4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~   37 (231)
T PRK12374          4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY   37 (231)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            4556665   799999999999999999999987

>PHA02518 ParA-like protein; Provisional

Probab=83.45  E-value=1.2  Score=39.48  Aligned_cols=31  Identities=32%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             EEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        96 vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +|+|+   |-.||||++..|+..|...|++|.+.
T Consensus         2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli   35 (211)
T PHA02518          2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV   35 (211)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            44544   66789999999999999999999764

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=83.38  E-value=3.5  Score=39.89  Aligned_cols=35  Identities=26%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             CCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..|+|.|    .|-.|||-++.+|+..|++.|++++..+
T Consensus        27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS   65 (311)
T TIGR00682        27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS   65 (311)
T ss_pred             CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence            5688888    4889999999999999999999998753

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>TIGR01287 nifH nitrogenase iron protein

Probab=83.10  E-value=1.6  Score=40.87  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=26.4

Q ss_pred             EEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           96 TVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        96 vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .|+|.  |-.||||+|.-|+..|...|++|.+.
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli   34 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV   34 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence            45555  46799999999999999999999875

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=82.86  E-value=1.6  Score=39.49  Aligned_cols=31  Identities=42%  Similarity=0.654  Sum_probs=26.1

Q ss_pred             EEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           97 VHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        97 I~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      |-||||   .|||+++..|.+.|++.|++|+.|-
T Consensus         2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K   35 (222)
T PRK00090          2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK   35 (222)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence            345554   7999999999999999999998863

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=82.60  E-value=1.8  Score=39.94  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=26.8

Q ss_pred             cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|+   |-.||||++..|+..|...|++|.+.
T Consensus         2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli   36 (231)
T PRK13849          2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF   36 (231)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence            466666   45689999999999999999999773

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=82.54  E-value=3.6  Score=40.31  Aligned_cols=36  Identities=31%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             CCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577           92 SKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        92 ~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ...|||.|    .|-.|||-++.+|+..|++.|+++++.+
T Consensus        54 ~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS   93 (338)
T PRK01906         54 LGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS   93 (338)
T ss_pred             CCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence            35688887    6889999999999999999999998753

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=82.41  E-value=1.3  Score=41.37  Aligned_cols=30  Identities=30%  Similarity=0.300  Sum_probs=25.4

Q ss_pred             EEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           97 VHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        97 I~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      |+|+  |-.||||++.-|+..|...|+||.+.
T Consensus         3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli   34 (267)
T cd02032           3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI   34 (267)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4454  56789999999999999999999764

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=82.40  E-value=1.6  Score=37.56  Aligned_cols=30  Identities=33%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             EEEcCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           97 VHIAGTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        97 I~VtGTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..-.|-.||||++..|+..|.+.|++|.+.
T Consensus         5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv   34 (179)
T cd02036           5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI   34 (179)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            344577899999999999999999999874

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=82.37  E-value=1.8  Score=42.09  Aligned_cols=33  Identities=33%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577           93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC  125 (353)
Q Consensus        93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~  125 (353)
                      +..+|-+.|.|  |||||.+=|++.|.+.|++|.+
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll  172 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL  172 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence            46678888877  6999999999999999999976

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=82.15  E-value=1.3  Score=41.29  Aligned_cols=31  Identities=32%  Similarity=0.200  Sum_probs=26.5

Q ss_pred             cEEEEcCCCCchHHHHHHHHHHHHcCCCeEE
Q 018577           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGC  125 (353)
Q Consensus        95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~  125 (353)
                      -++++.|-.||||+++-|+..|...|.+|-.
T Consensus         5 ai~s~kGGvG~TTltAnLA~aL~~~G~~Vla   35 (243)
T PF06564_consen    5 AIVSPKGGVGKTTLTANLAWALARLGESVLA   35 (243)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            3556667789999999999999999999865

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13236 nitrogenase reductase; Reviewed

Probab=81.94  E-value=2.2  Score=40.75  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             CCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577           92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY-TSPH  130 (353)
Q Consensus        92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~  130 (353)
                      .++++|.|.|  -.|||||+.-|+..|.+.|+||.++ .-|+
T Consensus         4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q   45 (296)
T PRK13236          4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK   45 (296)
T ss_pred             cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence            4567777754  5789999999999999999999887 4443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=81.86  E-value=2.4  Score=38.85  Aligned_cols=48  Identities=31%  Similarity=0.347  Sum_probs=32.8

Q ss_pred             CCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEE------ecCCcccccceeeeeC
Q 018577           92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGC------YTSPHIKTIRERMNVG  141 (353)
Q Consensus        92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~------~tSp~l~~~~eri~in  141 (353)
                      .+..+|+|+|  ..||||++..|...|...  ++.+      |-+..-..+.||...|
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n   61 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKIN   61 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcC
Confidence            4557899999  489999999999999855  3433      3344444454554444

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=81.81  E-value=1.3  Score=41.22  Aligned_cols=27  Identities=30%  Similarity=0.238  Sum_probs=24.2

Q ss_pred             cCCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577          100 AGTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus       100 tGTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      -|-.||||||.-|+..|.+.|+||.+.
T Consensus         8 KGGVGKTT~~~nLA~~La~~g~rVLli   34 (268)
T TIGR01281         8 KGGIGKSTTSSNLSVAFAKLGKRVLQI   34 (268)
T ss_pred             CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            467899999999999999999999764

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>CHL00175 minD septum-site determining protein; Validated

Probab=81.65  E-value=1.9  Score=40.52  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe-cCC
Q 018577           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY-TSP  129 (353)
Q Consensus        94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~-tSp  129 (353)
                      .++|.|++.   .||||++.-|+..|.+.|++|.+. ..|
T Consensus        15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~   54 (281)
T CHL00175         15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI   54 (281)
T ss_pred             ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            468888765   789999999999999999999875 444

>PRK10867 signal recognition particle protein; Provisional

Probab=81.56  E-value=11  Score=38.32  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=28.2

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHc-CCCeEEe
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAE-GYSVGCY  126 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~-G~~vg~~  126 (353)
                      ..+|.++|-  .|||||+.-|+..|... |++|.+.
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV  135 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV  135 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            467888885  68999999999999988 9999874

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=81.47  E-value=2.1  Score=40.68  Aligned_cols=32  Identities=31%  Similarity=0.446  Sum_probs=28.8

Q ss_pred             cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEec
Q 018577           95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ++|+|+|  -.||||.+.-|...|++.| +|++.-
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK   35 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK   35 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence            6899999  7899999999999999999 888763

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=81.18  E-value=3.7  Score=39.00  Aligned_cols=41  Identities=34%  Similarity=0.477  Sum_probs=28.8

Q ss_pred             HHHHHHcCCCCC----CCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577           81 NRLMDRLGNPHS----KFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (353)
Q Consensus        81 ~~~l~~lg~p~~----~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~  122 (353)
                      .+...++|.+..    .+-+.|=+|| |||+++..++..+...|+.
T Consensus        44 ~~~r~~~g~~~~~~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~   88 (284)
T TIGR02880        44 ERLRQRLGLASAAPTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV   88 (284)
T ss_pred             HHHHHHhCCCcCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence            344455665432    2234567788 9999999999999988764

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=80.89  E-value=6.7  Score=40.24  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CCcEEEEcCC---CCchHHHHHHHHHHHHc
Q 018577           93 KFKTVHIAGT---KGKGSTAAFLSSILRAE  119 (353)
Q Consensus        93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~  119 (353)
                      +.+.|-||||   .|||+++..|.+.|+..
T Consensus       237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~  266 (476)
T PRK06278        237 KPKGIILLATGSESGKTFLTTSIAGKLRGK  266 (476)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            4677999998   69999999999999974

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=80.86  E-value=2.3  Score=43.02  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=31.8

Q ss_pred             CcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEecCCc
Q 018577           94 FKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYTSPH  130 (353)
Q Consensus        94 ~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~tSp~  130 (353)
                      +++|+|+|  -.||||.+.-|-..|+..||+|++.-..|
T Consensus         1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h   39 (452)
T PRK14495          1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH   39 (452)
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence            36899999  68999999999999999999999865433

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=80.27  E-value=1.7  Score=40.95  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             cEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|+|+  |-.|||||+.-|+..|...|+||.+.
T Consensus         2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli   35 (279)
T PRK13230          2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV   35 (279)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence            445555  46789999999999999999999775

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=80.12  E-value=4.5  Score=39.35  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             CCCCcEEEE----cCCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577           91 HSKFKTVHI----AGTKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        91 ~~~~~vI~V----tGTnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ....|||.|    +|-.|||-++.+|...|++.|+++++.+
T Consensus        32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS   72 (326)
T PF02606_consen   32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS   72 (326)
T ss_pred             CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc
Confidence            346788887    6889999999999999999999999854

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=80.04  E-value=3  Score=40.68  Aligned_cols=35  Identities=31%  Similarity=0.279  Sum_probs=30.7

Q ss_pred             CCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           92 SKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        92 ~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++.++|.|+|  .-||||++..|+..|...|++|++.
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli   65 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI   65 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4678888886  5799999999999999999999876

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
1o5z_A	442	Crystal Structure Of Folylpolyglutamate Synthase (T		5e-38
1fgs_A	428	Folylpolyglutamate Synthetase From Lactobacillus Ca		2e-28
2gca_A	428	Apo Form Of L. Casei Fpgs Length = 428		7e-28
1jbv_A	428	Fpgs-Amppcp Complex Length = 428		8e-28
2gcb_A	428	G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 42		4e-27
2gc6_A	428	S73a Mutant Of L. Casei Fpgs Length = 428		7e-27
2gc5_A	428	G51s Mutant Of L. Casei Fpgs Length = 428		2e-26
2vor_A	487	Crystal Structures Of Mycobacterium Tuberculosis Fo		1e-21
1w78_A	422	E.Coli Folc In Complex With Dhpp And Adp Length = 4		4e-21
3n2a_A	437	Crystal Structure Of Bifunctional Folylpolyglutamat		5e-20
2vos_A	487	Mycobacterium Tuberculosis Folylpolyglutamate Synth		5e-13

>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166) From Thermotoga Maritima At 2.10 A Resolution Length = 442

Iteration: 1
 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/252 (37%), Positives = 141/252 (55%), Gaps = 28/252 (11%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ L+ +LGNPH ++KT+HI GT GKGS A  +S+IL ++GY VG Y SPH+ T RE
Sbjct: 35  LERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRE 94
Query: 137 RMNVGRLNRP-VSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
           R+   RLN   +S + +  ++  ++ +L+E  + E    + FEV+TAMAF  FA+ +VDI
Sbjct: 95  RI---RLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDI 151
Query: 196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV 255
           AV+E GLGG  DATN++       S I T+  +H   LG ++E IA  KSGIIK   P+V
Sbjct: 152 AVLEVGLGGRLDATNVVFP---LCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLV 208
Query: 256 SAYDAGIRATINGLSMFNDRPCQSCDIIVQAERDLKLSIELL----------------DV 299
           +    G R     L +  D   +    +   ++D  + ++ L                D+
Sbjct: 209 T----GERKR-EALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDL 263
Query: 300 KLCMIGNHQLHN 311
            L M G HQ+ N
Sbjct: 264 VLTMNGPHQIEN 275

>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei Length = 428

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 115/218 (52%), Gaps = 28/218 (12%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLENGC----ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218
           L+   RL+       +T FE +TA+A+  F Q  VD+AVIE G+GG  D+TN+I+     
Sbjct: 106 LE---RLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---V 159
Query: 219 ASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
            SV+T +  +H   LG ++  IA  K+GIIK G PVV+
Sbjct: 160 VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT 197

>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs Length = 428

Iteration: 1
 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 28/218 (12%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLENGC----ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218
           L+   RL+       +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+     
Sbjct: 106 LE---RLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---V 159
Query: 219 ASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
            SV+T +  +H   LG ++  IA  K+GIIK G PVV+
Sbjct: 160 VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT 197

>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex Length = 428

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 28/218 (12%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLENGC----ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218
           L+   RL+       +T FE +TA+A+  F Q  VD+AVIE G+GG  D+TN+I+     
Sbjct: 106 LE---RLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---V 159
Query: 219 ASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
            SV+T +  +H   LG ++  IA   +GIIK G PVV+
Sbjct: 160 VSVLTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVT 197

>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 428

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 114/218 (52%), Gaps = 28/218 (12%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GK + A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKSTAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLENGC----ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218
           L+   RL+       +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+     
Sbjct: 106 LE---RLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---V 159
Query: 219 ASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
            SV+T++  +H   LG ++  IA  K+GIIK G PVV+
Sbjct: 160 VSVLTSVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT 197

>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs Length = 428

Iteration: 1
 Score =  117 bits (294), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 28/218 (12%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YT+P I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLENGC----ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218
           L+   RL+       +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+     
Sbjct: 106 LE---RLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---V 159
Query: 219 ASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
            SV+T +  +H   LG ++  IA   +GIIK G PVV+
Sbjct: 160 VSVLTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVT 197

>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs Length = 428

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 112/218 (51%), Gaps = 28/218 (12%)
Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+G             D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKTG-------------DHRRILTLLHALGNPQQQGRYIHVTGT 47
Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GK S A  ++ +L A G +VG YTSP I    ER+ +   + P+   AL      ++  
Sbjct: 48  NGKSSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAA 105
Query: 163 LDEAIRLENGC----ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLA 218
           L+   RL+       +T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+     
Sbjct: 106 LE---RLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---V 159
Query: 219 ASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVS 256
            SV+T +  +H   LG ++  IA   +GIIK G PVV+
Sbjct: 160 VSVLTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVVT 197

>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp And Amppcp Length = 487

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 12/179 (6%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ LMD LG+P   + ++HIAGT GK S A  + +++ A     G  TSPH+++  E
Sbjct: 47  LTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVE 106
Query: 137 RMNVGRLNRPVSAKALNCLFHKIK---GVLDEAIRLENG----CITHFEVLTAMAFALFA 189
           R+++    +P+S       + +I+    ++D+  +   G     ++ FEVLTAMAFA FA
Sbjct: 107 RISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFA 164
Query: 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII 248
              VD+AV+E G+GG  DATN+I++     +VIT I  +H   LG  +  IA  K+GII
Sbjct: 165 DAPVDVAVVEVGMGGRWDATNVINAP---VAVITPISIDHVDYLGADIAGIAGEKAGII 220

>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp Length = 422

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 95/183 (51%), Gaps = 13/183 (7%)
Query: 75  FDLG--RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIK 132
            DLG  R++ +  RLG          +AGT GKG+T   L SIL A GY VG Y+SPH+ 
Sbjct: 28  IDLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLV 87
Query: 133 TIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNH 192
              ER+ V     P SA   +  F +I+    +        +T+FE  T  A  LF Q  
Sbjct: 88  RYTERVRVQGQELPESAHTAS--FAEIESARGDI------SLTYFEYGTLSALWLFKQAQ 139
Query: 193 VDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR 252
           +D+ ++E GLGG  DATNI+ +     +V+T+I  +HT  LG   E+I    +GI +  +
Sbjct: 140 LDVVILEVGLGGRLDATNIVDAD---VAVVTSIALDHTDWLGPDRESIGREXAGIFRSEK 196
Query: 253 PVV 255
           P +
Sbjct: 197 PAI 199

>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92 Length = 437

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 11/179 (6%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R+ ++ +RL       K   +AGT GKG+T   L +IL A G  VG Y+SPH+    E
Sbjct: 35  LERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTE 94
Query: 137 RMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIA 196
           R+        +  + L+   H       EA R  +  +T+FE  T  A  LF Q  +D+ 
Sbjct: 95  RVR-------IQGQELSEAEHSHSFAQIEAGR-GDISLTYFEFGTLSALQLFKQAKLDVV 146
Query: 197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV 255
           ++E GLGG  DATNI+ S     + IT+I  +HT  LG   E+I   K+G+ + G+P V
Sbjct: 147 ILEVGLGGRLDATNIVDSD---VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAV 202

>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp Length = 487

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 12/179 (6%)
Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ L D LG+P   + ++HIAGT GK S A  + +++ A     G  TSPH+++  E
Sbjct: 47  LTRISALXDLLGSPQRSYPSIHIAGTNGKTSVARXVDALVTALHRRTGRTTSPHLQSPVE 106
Query: 137 RMNVGRLNRPVSAKALNCLFHKIK---GVLDEAIRLENG----CITHFEVLTAMAFALFA 189
           R+++    +P+S       + +I+    ++D+  +   G      + FEVLTA AFA FA
Sbjct: 107 RISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAXSKFEVLTAXAFAAFA 164
Query: 190 QNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII 248
              VD+AV+E G GG  DATN+I++     +VIT I  +H   LG  +  IA  K+GII
Sbjct: 165 DAPVDVAVVEVGXGGRWDATNVINAP---VAVITPISIDHVDYLGADIAGIAGEKAGII 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	2e-91
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	1e-90
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	3e-83
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	6e-78
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	7e-77
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	1e-07
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	4e-07
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	6e-04

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442

 Score =  279 bits (717), Expect = 2e-91
 Identities = 100/296 (33%), Positives = 149/296 (50%), Gaps = 30/296 (10%)

Query: 39  SSEEPELMNFMNY---LDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFK 95
           S +     + M Y   L  L +    G  K           L R++ L+ +LGNPH ++K
Sbjct: 3   SDKIHHHHHHMAYLEVLRYLYHKRPMGKVK---------PGLERISMLLSKLGNPHLEYK 53

Query: 96  TVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN-RPVSAKALNC 154
           T+HI GT GKGS A  +S+IL ++GY VG Y SPH+ T RER+   RLN   +S + +  
Sbjct: 54  TIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERI---RLNEEYISEEDVVK 110

Query: 155 LFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISS 214
           ++  ++ +L+E  + E    + FEV+TAMAF  FA+ +VDIAV+E GLGG  DATN++  
Sbjct: 111 IYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFP 170

Query: 215 SGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFN 273
                S I T+  +H   LG ++E IA  KSGIIK   P+V+          +  ++   
Sbjct: 171 ---LCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKK 227

Query: 274 DRPC----QSCDIIVQAER------DLKLSIELLDVKLCMIGNHQLHNALTATCAA 319
                   +   + V++ +      D        D+ L M G HQ+ NA  A    
Sbjct: 228 SSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTL 283

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428

 Score =  277 bits (710), Expect = 1e-90
 Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 50/307 (16%)

Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+              D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKT-------------GDHRRILTLLHALGNPQQQGRYIHVTGT 47

Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLN-RPVSAKALNCLFHKIKG 161
            GKGS A  ++ +L A G +VG YTSP I    ER+    ++  P+   AL      ++ 
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERI---MIDHEPIPDAALVNAVAFVRA 104

Query: 162 VLDEAIRLENGC-ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAAS 220
            L+   + +    +T FE +TA+A+  F Q  VD+AVIE G+GG  D+TN+I+      S
Sbjct: 105 ALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITP---VVS 161

Query: 221 VITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFNDRPCQS 279
           V+T +  +H   LG ++  IA  K+GIIK G PVV+        A +            +
Sbjct: 162 VLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVV-------AAKVAT 214

Query: 280 CDI-IVQAERDLKLSI-----------------ELLDVKLCMIGNHQLHNALTATCAALC 321
                ++ +RD  +                    + D+++ ++G++Q  N   A   A  
Sbjct: 215 TGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKV 274

Query: 322 LRDQGGY 328
              Q  +
Sbjct: 275 YAKQTEW 281

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487

 Score =  259 bits (665), Expect = 3e-83
 Identities = 84/284 (29%), Positives = 128/284 (45%), Gaps = 32/284 (11%)

Query: 75  FDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTI 134
             L R++ LMD LG+P   + ++HIAGT GK S A  + +++ A     G  TSPH+++ 
Sbjct: 45  PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSP 104

Query: 135 RERMNVGRLN-RPVSAKALNCLFHKIKGVLDEAIRLENGC-------ITHFEVLTAMAFA 186
            ER+    ++ +P+S       + +I+ ++    +            ++ FEVLTAMAFA
Sbjct: 105 VERI---SIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFA 161

Query: 187 LFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSG 246
            FA   VD+AV+E G+GG  DATN+I++     +VIT I  +H   LG  +  IA  K+G
Sbjct: 162 AFADAPVDVAVVEVGMGGRWDATNVINA---PVAVITPISIDHVDYLGADIAGIAGEKAG 218

Query: 247 IIKYGR------PVVSA-YDAGIRATINGLSMFNDRPCQSCDIIVQAER----------D 289
           II            V       +   +   S+  D      D      R           
Sbjct: 219 IITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQ 278

Query: 290 LK-LSIELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLS 332
           L+ L     D+ L + G HQ HNA+ A  +       G    L 
Sbjct: 279 LQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLD 322

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Length = 437

 Score =  244 bits (626), Expect = 6e-78
 Identities = 76/272 (27%), Positives = 116/272 (42%), Gaps = 39/272 (14%)

Query: 74  GFDLG--RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
             +LG  R+ ++ +RL       K   +AGT GKG+T   L +IL A G  VG Y+SPH+
Sbjct: 30  PIELGLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHL 89

Query: 132 KTIRERMNVGRLN-RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQ 190
               ER+   R+  + +S    +  F +I+    + I L     T+FE  T  A  LF Q
Sbjct: 90  LRYTERV---RIQGQELSEAEHSHSFAQIEAGRGD-ISL-----TYFEFGTLSALQLFKQ 140

Query: 191 NHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
             +D+ ++E GLGG  DATNI+ S     + IT+I  +HT  LG   E+I   K+G+ + 
Sbjct: 141 AKLDVVILEVGLGGRLDATNIVDS---DVAAITSIALDHTDWLGYDRESIGREKAGVFRG 197

Query: 251 GRPVVSA-------------------YDAGIRATINGLSMFNDRPCQSCDIIVQAERDLK 291
           G+P V                     Y   +    +    F+ +      I     +  +
Sbjct: 198 GKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGE 257

Query: 292 LSIELLDVKLCMIGNHQLHNALTATCAALCLR 323
             +  L      + N  L NA TA        
Sbjct: 258 RQLTGL-----PVPNVPLANAATALAVLHYSE 284

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422

 Score =  241 bits (618), Expect = 7e-77
 Identities = 76/261 (29%), Positives = 116/261 (44%), Gaps = 37/261 (14%)

Query: 77  LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRE 136
           L R++ +  RLG          +AGT GKG+T   L SIL A GY VG Y+SPH+    E
Sbjct: 32  LERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTE 91

Query: 137 RMNVGRLN-RPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDI 195
           R+   R+  + +   A    F +I+    + I L     T+FE  T  A  LF Q  +D+
Sbjct: 92  RV---RVQGQELPESAHTASFAEIESARGD-ISL-----TYFEYGTLSALWLFKQAQLDV 142

Query: 196 AVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVV 255
            ++E GLGG  DATNI+ +     +V+T+I  +HT  LG   E+I   K+GI +  +P +
Sbjct: 143 VILEVGLGGRLDATNIVDA---DVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAI 199

Query: 256 SAYDAGIRATINGLSMFNDRPCQSCD-IIVQAERDLKLSIE------------LLDVKLC 302
              +  + +TI           Q    ++ +   +   S+             L ++ L 
Sbjct: 200 VG-EPEMPSTI-------ADVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPL- 250

Query: 303 MIGNHQLHNALTATCAALCLR 323
                   NA TA  A     
Sbjct: 251 --PLVPQPNAATALAALRASG 269

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 29/151 (19%)

Query: 194 DIAVIEAGLGGARDATNIISSSGLA---ASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           D AVIE G   A     I  +  L    A+++  +   H    G SL  +A AK  I   
Sbjct: 153 DYAVIELG---ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSG 208

Query: 251 ----GRPVVSAYDAGIRATINGLSMFNDRPCQS------------CDIIVQAER---DLK 291
               G  +++A +          S+   R                 +I V +      L+
Sbjct: 209 LPENGIAIMNADNNDWLNW---QSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQ 265

Query: 292 LSIELLDVKLCMIGNHQLHNALTATCAALCL 322
                +DV L + G H + NAL A   ++ +
Sbjct: 266 TPTGSVDVLLPLPGRHNIANALAAAALSMSV 296

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 15/140 (10%)

Query: 194 DIAVIEAGLGGARDATNIISSSGLA---ASVITTIGEEHTAALGGSLETIAMAKSGIIKY 250
           +  V+E G        +I   S LA    +++T +GE H A        IA  K  I   
Sbjct: 153 EKLVLEMG---QDHLGDIHLLSELARPKTAIVTLVGEAHLAFFK-DRSEIAKGKMQIADG 208

Query: 251 ----GRPVV---SAYDAGIRATINGLSMFNDRPCQSCDIIVQAER-DLKLSIELLDVKLC 302
                  +       +  +      +        +  D++ + +    K +     + L 
Sbjct: 209 MASGSLLLAPADPIVEDYLPIDKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLP 268

Query: 303 MIGNHQLHNALTATCAALCL 322
           + G +   NA+ A+  AL  
Sbjct: 269 VTGKYNATNAMIASYVALQE 288

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 88  GNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVG 124
           G+P  +   + I GT GK +T   + + LRA G   G
Sbjct: 140 GHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAG 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	100.0
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	100.0
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	100.0
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	100.0
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	100.0
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	100.0
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	100.0
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	100.0
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	100.0
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	100.0
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	100.0
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	100.0
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	99.98
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	99.98
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	99.98
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	99.97
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	99.97
2obn_A	349	Hypothetical protein; structural genomics, joint c	95.85
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.19
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.19
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	93.76
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	93.37
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	93.31
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.07
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	92.43
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	92.3
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	91.92
2g0t_A	350	Conserved hypothetical protein; structural genomic	91.43
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	91.11
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	90.72
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	90.63
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	90.3
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	90.04
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	89.83
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.51
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	89.49
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	89.19
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	88.52
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	88.17
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	88.05
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	87.79
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	87.61
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	87.46
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	87.3
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	87.28
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	87.2
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	85.68
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	85.52
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	85.42
3end_A	307	Light-independent protochlorophyllide reductase ir	84.99
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	84.88
3cwq_A	209	Para family chromosome partitioning protein; alpha	84.41
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	83.49
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	82.14
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	81.77
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	80.04

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=100.00  E-value=6.6e-58  Score=457.41  Aligned_cols=277  Identities=26%  Similarity=0.328  Sum_probs=221.4

Q ss_pred             CccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCC
Q 018577           42 EPELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGY  121 (353)
Q Consensus        42 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~  121 (353)
                      ..+|++|++||++++.+   ++          +++|+||+++|++||+|+.++++||||||||||||++||++||+++||
T Consensus        13 ~~~~~~~l~~l~~~~~~---~~----------~~gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~   79 (437)
T 3nrs_A           13 TSPLAAWLCYLEHLHSQ---PI----------ELGLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGL   79 (437)
T ss_dssp             TSCHHHHHHHHHTC--------------------CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred             CcCHHHHHHHHHhcCCC---CC----------CCCHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCC
Confidence            45799999999998865   33          378999999999999999999999999999999999999999999999


Q ss_pred             CeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeec
Q 018577          122 SVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAG  201 (353)
Q Consensus       122 ~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG  201 (353)
                      +||+|||||+.+|||||++|  |.+|+++++.++++++++..      +..++|+||++|++||.+|.+.++|++|+|+|
T Consensus        80 ~vg~~tSphl~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvG  151 (437)
T 3nrs_A           80 RVGVYSSPHLLRYTERVRIQ--GQELSEAEHSHSFAQIEAGR------GDISLTYFEFGTLSALQLFKQAKLDVVILEVG  151 (437)
T ss_dssp             CEEEECCCCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             cEEEECCCCcCCcceEEEEC--CEECCHHHHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            99999999999999999999  99999999999999887653      34679999999999999999999999999999


Q ss_pred             CCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec-CchhHHHHHHHhHHhcCCCCccc
Q 018577          202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFNDRPCQSC  280 (353)
Q Consensus       202 ~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~-dd~~~~~~~~~~~~~~~~~~~~~  280 (353)
                      +||++|++|+++   |+++|||||+.||+++||+|+|+|+++|++|++++.++|.. ||+.  .++.+.+...++++...
T Consensus       152 lggrld~tnii~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~d~~~--~~~~~~a~~~~~~~~~~  226 (437)
T 3nrs_A          152 LGGRLDATNIVD---SDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEPDMP--QSIADVAAELGAQLYRR  226 (437)
T ss_dssp             SSSTTSGGGGSC---CSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEB
T ss_pred             CCCccccccccC---CCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECCccHH--HHHHHHHHHcCCcEEEe
Confidence            999999999985   57999999999999999999999999999999999886655 4442  23444444444432211


Q ss_pred             --ceEEEe-------------ecceeeeee-eeeeeeCCC--chHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCC
Q 018577          281 --DIIVQA-------------ERDLKLSIE-LLDVKLCMI--GNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEH  342 (353)
Q Consensus       281 --d~~~~~-------------~~~~~~~~~-~~~~~l~l~--G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~  342 (353)
                        ++.+..             ...+.+... ...+.++++  |.||+.||++|+++ .     +++++.+.|++||+++.
T Consensus       227 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~Na~~Alaa~~~-~-----~lgi~~~~i~~gL~~~~  300 (437)
T 3nrs_A          227 DVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHY-S-----ELPLSDEAIRQGLQAAS  300 (437)
T ss_dssp             TTTEEEEC--------------CCEEEEETTEEEEEECCCSSCHHHHHHHHHHHHH-H-----TCCCCHHHHHHHHHHCC
T ss_pred             cccceeeecccccccccccccCceEEEecCCcceeccCCcchhHHHHHHHHHHHHH-h-----CCCCCHHHHHHHHHhCC
Confidence              111111             111222211 123456666  67777777776665 2     34999999999999995


Q ss_pred             CCCcceeec
Q 018577          343 FWRAEIFLM  351 (353)
Q Consensus       343 ~~pgR~~~~  351 (353)
                       |||||..+
T Consensus       301 -~pGR~e~v  308 (437)
T 3nrs_A          301 -LPGRFQVV  308 (437)
T ss_dssp             -CTTSSEEE
T ss_pred             -CCCceEEE
Confidence             99998765

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=100.00  E-value=3.5e-55  Score=436.47  Aligned_cols=290  Identities=29%  Similarity=0.441  Sum_probs=242.5

Q ss_pred             ccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (353)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~  122 (353)
                      ++|++|++||++++.+   ++          +++|+||+++|+.||+|+.+.++||||||||||||++||++||+++|++
T Consensus         1 ~~~~~~~~~l~~~~~~---~~----------~~~l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~   67 (428)
T 1jbw_A            1 MNYTETVAYIHSFPRL---AK----------TGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLT   67 (428)
T ss_dssp             CCHHHHHHHHTTCCCC---CC----------CSSCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHhhccc---CC----------CCCHHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCC
Confidence            4689999999887643   33          3789999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh-cCCccChhHHHHHHHHHHHhhCCCCEEEEeec
Q 018577          123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL-ENGCITHFEVLTAMAFALFAQNHVDIAVIEAG  201 (353)
Q Consensus       123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~-~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG  201 (353)
                      ||+|+|||+.+++|||++|  |.+++++++.++++++.+..+.+... +..++|+||++|++||.+|.+.++|++|+|+|
T Consensus        68 vg~~~sp~l~~~~eri~i~--g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg  145 (428)
T 1jbw_A           68 VGLYTSPFIMRFNERIMID--HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVG  145 (428)
T ss_dssp             EEEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             EEEEeCCccCccceEEEEC--CEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence            9999999999999999999  99999999999999998877655321 23568999999999999999999999999999


Q ss_pred             CCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCcc-
Q 018577          202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQS-  279 (353)
Q Consensus       202 ~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~~-  279 (353)
                      ++|++|.++++.   |+++|||||+.||+++||+|+|+|+++|++|++++.+ |+|.||+.+.+++...+...++++.. 
T Consensus       146 ~~g~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~  222 (428)
T 1jbw_A          146 IGGDTDSTNVIT---PVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRF  222 (428)
T ss_dssp             SSSTTSTTCSCC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEB
T ss_pred             CCccccccccCC---CCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            999999999884   6899999999999999999999999999999998766 66778888777776655443433221 


Q ss_pred             -cceEEEee-----c-ceeeee--eee-eeeeCCCchHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHhcCCCCCcce
Q 018577          280 -CDIIVQAE-----R-DLKLSI--ELL-DVKLCMIGNHQLHNALTATCAALCL-RDQGGYLMLSYFLSGFREEHFWRAEI  348 (353)
Q Consensus       280 -~d~~~~~~-----~-~~~~~~--~~~-~~~l~l~G~hq~~Na~~Alaaa~~l-~~~~~gi~~~~I~~gL~~~~~~pgR~  348 (353)
                       .++.....     + .+.+..  ... .++++++|.||++|+++|++++..+ ...++.++.+.|++||+++. |||||
T Consensus       223 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~  301 (428)
T 1jbw_A          223 DRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-WPARL  301 (428)
T ss_dssp             TTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSS
T ss_pred             CccceeeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCc-CCCce
Confidence             12222110     1 122221  112 6789999999999999999999988 43445699999999999997 99999


Q ss_pred             eec
Q 018577          349 FLM  351 (353)
Q Consensus       349 ~~~  351 (353)
                      ..+
T Consensus       302 e~~  304 (428)
T 1jbw_A          302 EKI  304 (428)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            765

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=100.00  E-value=1.9e-55  Score=445.08  Aligned_cols=290  Identities=30%  Similarity=0.414  Sum_probs=235.4

Q ss_pred             cHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCe
Q 018577           44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV  123 (353)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~v  123 (353)
                      +|++|++||+.++.  ..++          +++|+||+++++.||+|+.++++||||||||||||++||++||+++|++|
T Consensus        26 ~~~~~~~~l~~~~~--~~~~----------~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~v   93 (487)
T 2vos_A           26 SLLQVEHLLDQRWP--ETRI----------DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRT   93 (487)
T ss_dssp             HHHHHHHHHTTTC-----CC----------CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHhhCc--ccCC----------CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCe
Confidence            57777777776532  1122          37899999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHh-------hcCCccChhHHHHHHHHHHHhhCCCCEE
Q 018577          124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIR-------LENGCITHFEVLTAMAFALFAQNHVDIA  196 (353)
Q Consensus       124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~-------~~~~~~t~FE~~t~~a~~~f~~~~~d~~  196 (353)
                      |+|+|||+.+|||||++|  |.+++++.+.++++++++..+.+..       .....+|+||++|++||.+|.+.++|++
T Consensus        94 G~~tSp~l~~~~eri~i~--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~  171 (487)
T 2vos_A           94 GRTTSPHLQSPVERISID--GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVA  171 (487)
T ss_dssp             EEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEE
T ss_pred             EEECCCCcCcccceEEEC--CEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            999999999999999999  9999999999999999988766532       1244699999999999999999999999


Q ss_pred             EEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcc------cCCCc-eeecCchhHHHHHHHh
Q 018577          197 VIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII------KYGRP-VVSAYDAGIRATINGL  269 (353)
Q Consensus       197 VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Ii------k~g~~-vv~~dd~~~~~~~~~~  269 (353)
                      |+|+|+||++|.+|+++   |+++|||||+.||+++||+|+|+|+++|++||      +++.+ |+|.|||.+..++.+.
T Consensus       172 VlEvg~gg~~d~tn~i~---p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~  248 (487)
T 2vos_A          172 VVEVGMGGRWDATNVIN---APVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAE  248 (487)
T ss_dssp             EEECSSSSTTSTTCSSC---CSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHH
T ss_pred             EEEcCCCCccccccccC---CCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHH
Confidence            99999999999999885   57999999999999999999999999999999      66666 6677888877777665


Q ss_pred             HHhcCCCCcc--cceEEEe-----ec-ceeeee---eeeeeeeCCCchHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHH
Q 018577          270 SMFNDRPCQS--CDIIVQA-----ER-DLKLSI---ELLDVKLCMIGNHQLHNALTATCAALCLRDQ--GGYLMLSYFLS  336 (353)
Q Consensus       270 ~~~~~~~~~~--~d~~~~~-----~~-~~~~~~---~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~--~~gi~~~~I~~  336 (353)
                      +...++++..  .++.+..     .+ .+.+..   ....+.++++|.||++|+++|++++..+...  +++++.+.|++
T Consensus       249 a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~gi~~~~i~~  328 (487)
T 2vos_A          249 SVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRA  328 (487)
T ss_dssp             HHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHH
T ss_pred             HHHcCCeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHH
Confidence            5444433211  1222211     01 122221   1125789999999999999999999887321  13799999999


Q ss_pred             HHhcCCCCCcceeec
Q 018577          337 GFREEHFWRAEIFLM  351 (353)
Q Consensus       337 gL~~~~~~pgR~~~~  351 (353)
                      ||+++. |||||..+
T Consensus       329 gL~~~~-~pGR~e~v  342 (487)
T 2vos_A          329 GFAAVT-SPGRLERM  342 (487)
T ss_dssp             HHHTCC-CTTSSEEE
T ss_pred             HHHhCc-CCCceEEE
Confidence            999996 99998764

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=100.00  E-value=2.6e-55  Score=439.24  Aligned_cols=287  Identities=34%  Similarity=0.498  Sum_probs=234.2

Q ss_pred             CCccHHHHHHHHHhchhhhhcC-CCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHc
Q 018577           41 EEPELMNFMNYLDSLKNFEKSG-VPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAE  119 (353)
Q Consensus        41 ~~~~~~~~~~~l~~~~~~~~~g-~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~  119 (353)
                      --+.|++|++||++++.+   + +          +++|+|++++|+.||+|+.+.++||||||||||||++||++||+++
T Consensus        11 ~~~~~~~~~~~l~~~~~~---~~~----------~~gl~~~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~   77 (442)
T 1o5z_A           11 HHMAYLEVLRYLYHKRPM---GKV----------KPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQ   77 (442)
T ss_dssp             CHHHHHHHHHHHHTC--------C----------CCCSHHHHHHHHHTTCGGGSSEEEEEECSSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhCcC---CCC----------CCCHHHHHHHHHHcCCchhcCCEEEEECCcCHHHHHHHHHHHHHHC
Confidence            346789999999887654   3 2          3689999999999999999999999999999999999999999999


Q ss_pred             CCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEe
Q 018577          120 GYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIE  199 (353)
Q Consensus       120 G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlE  199 (353)
                      |++||+|+|||+.+|||||++|  |.+++++.+.++++++++..+.+...+..++|+||++|++||.+|.+.++|++|+|
T Consensus        78 G~~vg~~~Sphl~~~neri~in--G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlE  155 (442)
T 1o5z_A           78 GYRVGSYYSPHLSTFRERIRLN--EEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLE  155 (442)
T ss_dssp             TCCEEEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEECCCCcCccceeEEEC--CEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            9999999999999999999999  99999999999999999887776544557899999999999999999999999999


Q ss_pred             ecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCc
Q 018577          200 AGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQ  278 (353)
Q Consensus       200 vG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~  278 (353)
                      +|++|++|.++++.   |+++|||||+.||+++||+|+|+|+++|++|++++.+ |+|.||+....++...+...++++.
T Consensus       156 vg~~g~~d~t~~~~---P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~  232 (442)
T 1o5z_A          156 VGLGGRLDATNVVF---PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMY  232 (442)
T ss_dssp             CSSSSTTCGGGGCC---CSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCCCCccccccCC---CCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcCCChHHHHHHHHHHHHcCCcEE
Confidence            99999999999874   6899999999999999999999999999999998776 5667888877777665544443322


Q ss_pred             cc--ceEEEee-----c-ceeeee-eee-eeeeCCCchHHHHHHHHHHHHHH--HHHhcCCCCCHHHHHHHHhcCCCCCc
Q 018577          279 SC--DIIVQAE-----R-DLKLSI-ELL-DVKLCMIGNHQLHNALTATCAAL--CLRDQGGYLMLSYFLSGFREEHFWRA  346 (353)
Q Consensus       279 ~~--d~~~~~~-----~-~~~~~~-~~~-~~~l~l~G~hq~~Na~~Alaaa~--~l~~~~~gi~~~~I~~gL~~~~~~pg  346 (353)
                      ..  ++.....     + .+.+.. ... .++++++|.||++|+++|++++.  .+     +++.+.|+++|++|. |||
T Consensus       233 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l-----gi~~~~i~~~L~~~~-~~g  306 (442)
T 1o5z_A          233 VIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGL-----PLSEKAIREGLKNAK-NLG  306 (442)
T ss_dssp             EBTTTBEEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHCC-CTT
T ss_pred             EeCcceeeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhc-----CCCHHHHHHHHHhCC-CCC
Confidence            11  2222211     1 122211 112 67899999999999999999999  88     999999999999996 999


Q ss_pred             ceeec
Q 018577          347 EIFLM  351 (353)
Q Consensus       347 R~~~~  351 (353)
                      ||..+
T Consensus       307 R~e~~  311 (442)
T 1o5z_A          307 RFEIL  311 (442)
T ss_dssp             SSEEE
T ss_pred             ceEEE
Confidence            99765

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=100.00  E-value=7.4e-52  Score=411.69  Aligned_cols=277  Identities=29%  Similarity=0.378  Sum_probs=225.3

Q ss_pred             cHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCe
Q 018577           44 ELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSV  123 (353)
Q Consensus        44 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~v  123 (353)
                      +|++|++|+..++.+   ++          +++|+||+++|+.||+|+.+.++||||||||||||++||++||+++|++|
T Consensus        12 ~~~~~~~~~~~~~~~---~~----------~~gl~r~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~   78 (422)
T 1w78_A           12 PLASWLSYLENLHSK---TI----------DLGLERVSLVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKV   78 (422)
T ss_dssp             CHHHHHHHHTTSSSS---SC----------CCCSHHHHHHHHHHTCSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred             hHHHHHHHHHhcccC---CC----------CCCHHHHHHHHHHcCCcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCE
Confidence            588898888876533   22          37899999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCC
Q 018577          124 GCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLG  203 (353)
Q Consensus       124 g~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~g  203 (353)
                      |+|+|||+.++||||++|  |.+++++.+.++++++.+..      +...+|+||++|++||.+|.+.++|++|+|+|++
T Consensus        79 g~~~s~~l~~~neri~i~--g~~i~~~~~~~~~~~v~~~~------~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~  150 (422)
T 1w78_A           79 GVYSSPHLVRYTERVRVQ--GQELPESAHTASFAEIESAR------GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLG  150 (422)
T ss_dssp             EEECCSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHT------TTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             EEECCCCcCcCceEEEEC--CEECCHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            999999999999999999  99999999999998876542      2457899999999999999999999999999999


Q ss_pred             CcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeec-CchhHHHHHHHhHHhcCCCCcc--c
Q 018577          204 GARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSA-YDAGIRATINGLSMFNDRPCQS--C  280 (353)
Q Consensus       204 g~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~-dd~~~~~~~~~~~~~~~~~~~~--~  280 (353)
                      |++|.++++.   |+++|||||+.||+|+||+|+|+|+.+|++|++++.++|.. |++.  ..+...+...++++..  .
T Consensus       151 ~~~d~t~~~~---p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~d~~~--~~~~~~a~~~~~~~~~~g~  225 (422)
T 1w78_A          151 GRLDATNIVD---ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEPEMP--STIADVAQEKGALLQRRGV  225 (422)
T ss_dssp             STTSGGGGSC---CSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTT
T ss_pred             cccccccCCC---CCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcCccHH--HHHHHHHHHcCCceEEeCc
Confidence            9999999875   68999999999999999989999999999999988776554 4443  1232223222222111  1


Q ss_pred             ceEEEee-cceeeeeeeee-eeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          281 DIIVQAE-RDLKLSIELLD-VKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       281 d~~~~~~-~~~~~~~~~~~-~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++.+... ..+.+...... +.++++ .||++|+++|++++..+   +++++.+.|++||++|. |||||..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~---~~gi~~~~i~~~L~~~~-~~gR~e~~  293 (422)
T 1w78_A          226 EWNYSVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS---GLEVSENAIRDGIASAI-LPGRFQIV  293 (422)
T ss_dssp             TBEEEECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHCC-CTTSSEEE
T ss_pred             ceeeeccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhCC-CCceEEEE
Confidence            2222211 12222211112 578888 99999999999999885   45899999999999996 89998764

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=1.8e-38  Score=321.78  Aligned_cols=220  Identities=18%  Similarity=0.167  Sum_probs=169.7

Q ss_pred             cCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHH
Q 018577           87 LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEA  166 (353)
Q Consensus        87 lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~  166 (353)
                      +++|+.++++||||||||||||+.||++||+++|+++++++|++.       .+|  +..++                  
T Consensus       101 ~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~-------~i~--~~~~~------------------  153 (498)
T 1e8c_A          101 YHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN-------GLL--GKVIP------------------  153 (498)
T ss_dssp             TTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEE-------EET--TCCBC------------------
T ss_pred             hCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCc-------ccC--Ceeee------------------
Confidence            588988999999999999999999999999999999999999863       244  33332                  


Q ss_pred             HhhcCCccChhHHHHHHH-HHHHhhCCCCEEEEeecC----CCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHH
Q 018577          167 IRLENGCITHFEVLTAMA-FALFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIA  241 (353)
Q Consensus       167 ~~~~~~~~t~FE~~t~~a-~~~f~~~~~d~~VlEvG~----gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia  241 (353)
                           ..+|+||..++++ |.+|.+.++|++|+|+|+    ++++|.      .+|+++|||||+.||+++|| |+|+|+
T Consensus       154 -----~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~------~~p~vaViTNI~~DHld~~g-t~e~ia  221 (498)
T 1e8c_A          154 -----TENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAA------LKFAASVFTNLSRDHLDYHG-DMEHYE  221 (498)
T ss_dssp             -----CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTT------CBCSEEEECCCCSCCHHHHS-SHHHHH
T ss_pred             -----cCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccc------cCCCEEEEeCCChhhhhccC-CHHHHH
Confidence                 1357788888775 667889999999999986    455544      34789999999999999998 999999


Q ss_pred             HHHHhcccC---CCceeecCchhHHHHHHHhH------HhcCCCCccc---ceEEEe-----ec-ceeeee--eeeeeee
Q 018577          242 MAKSGIIKY---GRPVVSAYDAGIRATINGLS------MFNDRPCQSC---DIIVQA-----ER-DLKLSI--ELLDVKL  301 (353)
Q Consensus       242 ~~Ka~Iik~---g~~vv~~dd~~~~~~~~~~~------~~~~~~~~~~---d~~~~~-----~~-~~~~~~--~~~~~~l  301 (353)
                      ++|++|++.   +..|+|.|||....++....      ..++..- ..   ++....     .+ .+.+..  ....+.+
T Consensus       222 ~aK~~i~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~~~~l  300 (498)
T 1e8c_A          222 AAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINP-NCHGRWLKATEVNYHDSGATIRFSSSWGDGEIES  300 (498)
T ss_dssp             HHHHHHHHTSBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCT-TTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEE
T ss_pred             HHHHHHhccCCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecCC-CCCcCCEEEEEEEEcCCceEEEEEECCceEEEEe
Confidence            999999985   44588999998766654321      1112100 01   232211     01 122221  1236789


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          302 CMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       302 ~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +++|.||++|+++|++++..+     |++.+.|+++|++|.+|||||..+
T Consensus       301 ~l~G~hnv~NalaAia~~~~l-----Gi~~~~i~~~L~~~~~~~gR~e~v  345 (498)
T 1e8c_A          301 HLMGAFNVSNLLLALATLLAL-----GYPLADLLKTAARLQPVCGRMEVF  345 (498)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCTTSSEEE
T ss_pred             cCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCceEEE
Confidence            999999999999999999999     999999999999998899999765

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=100.00  E-value=6.8e-38  Score=320.09  Aligned_cols=229  Identities=21%  Similarity=0.241  Sum_probs=174.8

Q ss_pred             HHHHHHHHH-cCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577           78 GRMNRLMDR-LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (353)
Q Consensus        78 ~r~~~~l~~-lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (353)
                      ..+..+.+. +++|+.++++||||||||||||+.||++||+++|+++++++|.       ++.+|  |..++        
T Consensus       129 ~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~--~~~~~--------  191 (535)
T 2wtz_A          129 GVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVG--GADLP--------  191 (535)
T ss_dssp             HHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEET--TEEEC--------
T ss_pred             HHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeEC--CEecc--------
Confidence            344444443 6889888999999999999999999999999999999999873       44567  66664        


Q ss_pred             HHHHHHHHHHHhhcCCccChhHHHHHHHHH-HHhhCCCCEEEEeecC----CCcccccccccccCCcEEEEccCChhhHh
Q 018577          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFA-LFAQNHVDIAVIEAGL----GGARDATNIISSSGLAASVITTIGEEHTA  231 (353)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~-~f~~~~~d~~VlEvG~----gg~~D~tn~v~~~~p~vaVITnI~~DHl~  231 (353)
                                     ..+|.||..++.+++ .|.+.++|++|+|+|+    ++++|.      .+|+++|||||+.||+|
T Consensus       192 ---------------~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~------~~p~vaViTNI~~DHld  250 (535)
T 2wtz_A          192 ---------------SALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDG------TRFAVGAFTNLSRDHLD  250 (535)
T ss_dssp             ---------------CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTT------CCEEEEEECCCCSCCTT
T ss_pred             ---------------cCCccCcHHHHHHHHHHHHhCCCCEEEEECCCcccccccccc------CCcCEEEEcCCChHHhh
Confidence                           246788999988874 6778999999999996    445443      35789999999999999


Q ss_pred             hhCCCHHHHHHHHHhcccCC------CceeecCchhHHHHHHHhH--HhcCC-----CCcccceEEE-eec-ceeeee--
Q 018577          232 ALGGSLETIAMAKSGIIKYG------RPVVSAYDAGIRATINGLS--MFNDR-----PCQSCDIIVQ-AER-DLKLSI--  294 (353)
Q Consensus       232 ~lG~tle~ia~~Ka~Iik~g------~~vv~~dd~~~~~~~~~~~--~~~~~-----~~~~~d~~~~-~~~-~~~~~~--  294 (353)
                      +|| |+|+|+++|++|++..      ..|+|+|||....+.....  ..++.     ++...++... ..+ .|.+..  
T Consensus       251 ~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~~v~~~g~~~~~~d~~~~~i~~~~~~g~~f~~~~~~  329 (535)
T 2wtz_A          251 FHP-SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPA  329 (535)
T ss_dssp             TSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHSSCEEEESSSSCCSEEEEEEEEETTTEEEEEEECTT
T ss_pred             hcC-CHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcCCEEEEecCCCcCcEEEEEEEEcCCCCeEEEEEeCC
Confidence            998 9999999999999854      4699999998766655321  11221     1111111111 111 122221  


Q ss_pred             ee-eeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          295 EL-LDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       295 ~~-~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      .. ..+.++++|.||++|+++|++++..+     |++.+.|+++|++|. |||||..+
T Consensus       330 ~~~~~~~l~l~G~hnv~NalaAia~a~~l-----Gi~~~~i~~~L~~~~-~~gR~e~v  381 (535)
T 2wtz_A          330 GVGHHIGIRLPGRYNVANCLVALAILDTV-----GVSPEQAVPGLREIR-VPGRLEQI  381 (535)
T ss_dssp             SCEEEEEESCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCC-CTTSSEEC
T ss_pred             ceEEEEEeCCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCC-CCCceEEE
Confidence            11 36889999999999999999999999     999999999999998 99999765

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=7.4e-36  Score=299.14  Aligned_cols=221  Identities=20%  Similarity=0.266  Sum_probs=153.8

Q ss_pred             CChHHHHHHHHHcCCCC---CCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHH
Q 018577           75 FDLGRMNRLMDRLGNPH---SKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKA  151 (353)
Q Consensus        75 ~~l~r~~~~l~~lg~p~---~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~  151 (353)
                      ..+++++++|..|+++.   .+.++||||||||||||+.||++||+++| +++ +++   .+++++     +|.|.    
T Consensus        78 i~v~~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~---g~~n~~-----ig~p~----  143 (452)
T 1gg4_A           78 LIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA---GNLNND-----IGVPM----  143 (452)
T ss_dssp             EEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC---TTCCST-----THHHH----
T ss_pred             EEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc---ccccCC-----cchhH----
Confidence            34678899999888765   35799999999999999999999999999 565 444   233332     23322    


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccc---ccccccccCCcEEEEccCChh
Q 018577          152 LNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEE  228 (353)
Q Consensus       152 ~~~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D---~tn~v~~~~p~vaVITnI~~D  228 (353)
                                             |.||          .+.++|++|+|+|+++++|   .++.+   +|+++|||||++|
T Consensus       144 -----------------------t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~---~p~vaviTNI~~D  187 (452)
T 1gg4_A          144 -----------------------TLLR----------LTPEYDYAVIELGANHQGEIAWTVSLT---RPEAALVNNLAAA  187 (452)
T ss_dssp             -----------------------HHTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH---CCSEEEECCCC--
T ss_pred             -----------------------HHHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc---CCCEEEECCCChH
Confidence                                   1111          2567999999999999998   45544   4789999999999


Q ss_pred             hHhhhCCCHHHHHHHHHhccc---C-CCceeecCchhHHHHHHHh--H--HhcCCCCcccceEEEe-----ec-ceeeee
Q 018577          229 HTAALGGSLETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGL--S--MFNDRPCQSCDIIVQA-----ER-DLKLSI  294 (353)
Q Consensus       229 Hl~~lG~tle~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~--~--~~~~~~~~~~d~~~~~-----~~-~~~~~~  294 (353)
                      |+|+|| |+|+|+++|++|++   + +..|+|.|||....+.+..  +  ..++..-...++....     .+ .+.+..
T Consensus       188 Hld~~g-t~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~  266 (452)
T 1gg4_A          188 HLEGFG-SLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQT  266 (452)
T ss_dssp             -------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEE
T ss_pred             HhhhcC-CHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHHhhcCCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEE
Confidence            999998 99999999999998   3 3458899998776653210  0  1112100001222211     11 122221


Q ss_pred             --eeeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          295 --ELLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       295 --~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                        ....++++++|.||++|+++|++++..+     |++.+.|+++|++|.++||||..+
T Consensus       267 ~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~  320 (452)
T 1gg4_A          267 PTGSVDVLLPLPGRHNIANALAAAALSMSV-----GATLDAIKAGLANLKAVPGRLFPI  320 (452)
T ss_dssp             TTEEEEEEECSSSTHHHHHHHHHHHHHHHT-----TCCHHHHHHHHTTCCCCTTSSEEE
T ss_pred             CCCEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCceEE
Confidence              1236789999999999999999999999     999999999999998999999765

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=100.00  E-value=2.5e-36  Score=302.62  Aligned_cols=217  Identities=16%  Similarity=0.144  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHcCCCCC---CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHH
Q 018577           77 LGRMNRLMDRLGNPHS---KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALN  153 (353)
Q Consensus        77 l~r~~~~l~~lg~p~~---~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~  153 (353)
                      .++++++|..|+.+..   +.++||||||||||||+.||++||+++|. +  ++|||  +++++     +|.|++     
T Consensus        80 v~~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~-~--~~s~g--~~n~~-----ig~p~t-----  144 (454)
T 2am1_A           80 VDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK-T--YKTQG--NYNNE-----IGLPYT-----  144 (454)
T ss_dssp             CSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC-E--EECCT--TCCST-----THHHHH-----
T ss_pred             ECCHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC-E--eecCC--ccCcc-----cchHHH-----
Confidence            4567777777765543   67999999999999999999999999994 3  67887  34432     233321     


Q ss_pred             HHHHHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccc---ccccccccCCcEEEEccCChhhH
Q 018577          154 CLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARD---ATNIISSSGLAASVITTIGEEHT  230 (353)
Q Consensus       154 ~~~~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D---~tn~v~~~~p~vaVITnI~~DHl  230 (353)
                                            .||          .+.++|++|+|+|+++++|   .++.+   +|+++|||||++||+
T Consensus       145 ----------------------~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~---~p~vaviTNi~~DHl  189 (454)
T 2am1_A          145 ----------------------VLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA---RPKTAIVTLVGEAHL  189 (454)
T ss_dssp             ----------------------HHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH---CCSEEEECCCCCSSC
T ss_pred             ----------------------Hhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc---CCCEEEEcCCchHhh
Confidence                                  111          2568999999999999998   55554   478999999999999


Q ss_pred             hhhCCCHHHHHHHHHhcccC----CCceeecCchhHHHHHHHh--HHhcCCCCcccce-EEEee-c--ceeeeeeeeeee
Q 018577          231 AALGGSLETIAMAKSGIIKY----GRPVVSAYDAGIRATINGL--SMFNDRPCQSCDI-IVQAE-R--DLKLSIELLDVK  300 (353)
Q Consensus       231 ~~lG~tle~ia~~Ka~Iik~----g~~vv~~dd~~~~~~~~~~--~~~~~~~~~~~d~-~~~~~-~--~~~~~~~~~~~~  300 (353)
                      |+|| |+|+|+++|++|++.    +..|+|.|| .........  ...++..- ..++ .+... .  .+.+......++
T Consensus       190 d~~g-t~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~~~~~~~~~~~~g~~~-~~d~~~i~~~~~~~~~~~~~~~~~~~  266 (454)
T 2am1_A          190 AFFK-DRSEIAKGKMQIADGMASGSLLLAPADP-IVEDYLPIDKKVVRFGQGA-ELEITDLVERKDSLTFKANFLEQALD  266 (454)
T ss_dssp             TTCC-CHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGGGCCSSSEEEEESTTS-SBCEEEEEECSSCEEEEETTCSSEEE
T ss_pred             hhcC-CHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHHHHhcCCcEEEEeCCC-CCceeeeEEeCCceEEEEEecCcEEE
Confidence            9998 999999999999983    345888887 543221110  00111100 0122 11111 1  122211111578


Q ss_pred             eCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          301 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       301 l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++++|.||++|+++|++++..+     |++.+.|+++|++|.++||||..+
T Consensus       267 l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~  312 (454)
T 2am1_A          267 LPVTGKYNATNAMIASYVALQE-----GVSEEQIRLAFQHLELTRNRTEWK  312 (454)
T ss_dssp             ESSCCHHHHHHHHHHHHHHHHT-----TCCHHHHHHHGGGCCCCCCCSCEE
T ss_pred             ecCCCHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCccCCeeEE
Confidence            9999999999999999999999     999999999999998899999765

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=100.00  E-value=6.3e-34  Score=284.11  Aligned_cols=196  Identities=19%  Similarity=0.136  Sum_probs=145.3

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++||||||||||||++||++||+++|++++++++              +|.|++..                       
T Consensus       104 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gn--------------ig~~~~~~-----------------------  146 (439)
T 2x5o_A          104 APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN--------------IGLPALML-----------------------  146 (439)
T ss_dssp             SCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEES--------------SSBCHHHH-----------------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecc--------------cCHHHHHH-----------------------
Confidence            68999999999999999999999999999987532              36666421                       


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCc
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRP  253 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~  253 (353)
                                    + ..+.|++|+|+|+ +.+|.++.+.   |+++|||||++||+|+||+|+|+|+++|++|++.+.+
T Consensus       147 --------------~-~~~~d~~VlE~~~-~~l~~~~~~~---p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~  207 (439)
T 2x5o_A          147 --------------L-DDECELYVLELSS-FQLETTSSLQ---AVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKV  207 (439)
T ss_dssp             --------------C-CTTCCEEEEECCH-HHHHTCCCCC---CSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSE
T ss_pred             --------------h-CCCCCEEEEECCc-hhhcccccCC---CCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCE
Confidence                          1 2346999999999 5678777654   6899999999999999977999999999999998554


Q ss_pred             -eeecCchhHHHHHHHhH--HhcCCCCc-ccceEEEeecceeeee--eee-eeeeCCCchHHHHHHHHHHHHHHHHHhcC
Q 018577          254 -VVSAYDAGIRATINGLS--MFNDRPCQ-SCDIIVQAERDLKLSI--ELL-DVKLCMIGNHQLHNALTATCAALCLRDQG  326 (353)
Q Consensus       254 -vv~~dd~~~~~~~~~~~--~~~~~~~~-~~d~~~~~~~~~~~~~--~~~-~~~l~l~G~hq~~Na~~Alaaa~~l~~~~  326 (353)
                       |+|.|||.+..++...+  ..++..-. ..++... .+.+.+..  ... .++++++|.||++|+++|++++..+    
T Consensus       208 ~V~n~dd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l----  282 (439)
T 2x5o_A          208 CVVNADDALTMPIRGADERCVSFGVNMGDYHLNHQQ-GETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA----  282 (439)
T ss_dssp             EEEETTCGGGSCSCCCSSCCEEECSSSSSEEEEEET-TEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT----
T ss_pred             EEEeCCCHHHHHHhhcCCcEEEEeCCCcCcCcEEEE-CCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHc----
Confidence             77888886543322100  01111000 0011110 01111111  111 3578999999999999999999999    


Q ss_pred             CCCCHHHHHHHHhcCCCCCcceeec
Q 018577          327 GYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       327 ~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                       +++.+.|+++|++|++|||||..+
T Consensus       283 -gi~~~~i~~~L~~f~~~~gR~e~~  306 (439)
T 2x5o_A          283 -GLPRASSLKALTTFTGLPHRFEVV  306 (439)
T ss_dssp             -TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred             -CCCHHHHHHHHHhCCCCCCceEEE
Confidence             999999999999999999999764

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=100.00  E-value=6.7e-33  Score=278.95  Aligned_cols=194  Identities=18%  Similarity=0.115  Sum_probs=146.7

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccc-eeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIR-ERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLEN  171 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~-eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~  171 (353)
                      +.++||||||||||||++||++||+++|++++.|+||++.+++ ++++++                              
T Consensus       113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------  162 (469)
T 1j6u_A          113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------  162 (469)
T ss_dssp             CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence            4689999999999999999999999999999999999986665 554432                              


Q ss_pred             CccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCC
Q 018577          172 GCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYG  251 (353)
Q Consensus       172 ~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g  251 (353)
                                          +.| +|+|+++..   .++.  ..+|+++|||||++||+|+||+|+|+|+++|..+++..
T Consensus       163 --------------------~~~-~V~E~~~~~---~~~~--~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~  216 (469)
T 1j6u_A          163 --------------------NGP-VVYELDESE---EFFS--EFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNT  216 (469)
T ss_dssp             --------------------SSC-EEEEECTTS---GGGG--GCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTC
T ss_pred             --------------------CCC-EEEECCCcc---Cccc--cccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhC
Confidence                                246 999998763   4443  23578999999999999999966999999998877643


Q ss_pred             -CceeecCchhHHHHHHHhHHhcCC---CCcccceEEEeec--ceeeeee---eeeeeeCCCchHHHHHHHHHHHHHHHH
Q 018577          252 -RPVVSAYDAGIRATINGLSMFNDR---PCQSCDIIVQAER--DLKLSIE---LLDVKLCMIGNHQLHNALTATCAALCL  322 (353)
Q Consensus       252 -~~vv~~dd~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~--~~~~~~~---~~~~~l~l~G~hq~~Na~~Alaaa~~l  322 (353)
                       .+|+|+|||.+..+   ....++.   ++.. ++......  .|.+...   ...++++++|.||++|+++|++++..+
T Consensus       217 ~~~V~n~dd~~~~~~---~~~~~g~~~~d~~~-~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l  292 (469)
T 1j6u_A          217 DLVVTFAEDELTSHL---GDVTFGVKKGTYTL-EMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL  292 (469)
T ss_dssp             SEEEEETTCTTTGGG---CSEEECSSSSSEEE-EEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCChhhccc---eEEEEECCCceEEE-EEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHc
Confidence             57899998865422   1112222   1111 11111111  1222111   125789999999999999999999999


Q ss_pred             HhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          323 RDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       323 ~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                           +++.+.|+++|++|++|||||..+
T Consensus       293 -----gi~~~~i~~~L~~f~g~~gR~e~v  316 (469)
T 1j6u_A          293 -----GYDLAPVLEALEEFRGVHRRFSIA  316 (469)
T ss_dssp             -----TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred             -----CCCHHHHHHHHHhCCCCCCCcEEE
Confidence                 999999999999998899999765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=100.00  E-value=4.1e-33  Score=279.21  Aligned_cols=197  Identities=19%  Similarity=0.124  Sum_probs=145.1

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||+.||++||+.+|+++.+              .+|+|.|++..                       
T Consensus       112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~--------------~Gnig~~~~~~-----------------------  154 (451)
T 3lk7_A          112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLL--------------AGNIGFPASEV-----------------------  154 (451)
T ss_dssp             SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEE--------------EETSSSCHHHH-----------------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEE--------------eeecChhhhhh-----------------------
Confidence            48999999999999999999999999988743              24457665420                       


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC-
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR-  252 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~-  252 (353)
                                   .....++|++|+|+|+++ +|.++.+   +|+++|||||++||+|+|| |+|+|+++|++|++... 
T Consensus       155 -------------~~~~~~~d~~VlE~~s~~-l~~~~~~---~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~  216 (451)
T 3lk7_A          155 -------------VQAANDKDTLVMELSSFQ-LMGVKEF---RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSS  216 (451)
T ss_dssp             -------------TTTCCTTCEEEEECCHHH-HTTCSSC---CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCT
T ss_pred             -------------hhcCCCCCEEEEECCccc-ccccccc---CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCC
Confidence                         011346899999999876 4666554   4789999999999999998 99999999999998643 


Q ss_pred             ---ceeecCchhHHHHHHHhH---HhcCCCCcccceEEEeecceeeeee--eeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577          253 ---PVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQAERDLKLSIE--LLDVKLCMIGNHQLHNALTATCAALCLRD  324 (353)
Q Consensus       253 ---~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~l~l~G~hq~~Na~~Alaaa~~l~~  324 (353)
                         .|+|.|||.+..+.+...   ..++......++... ...+.+...  ...++++++|.||++|+++|++++..+  
T Consensus       217 ~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l--  293 (451)
T 3lk7_A          217 SDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQ-DKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLA--  293 (451)
T ss_dssp             TSEEEEETTSHHHHHHHTTCSSEEEEEESSSCCSSEEEE-TTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHH--
T ss_pred             CCEEEEECCcHHHHHHHhhcCCeEEEEccCCCcCCEEEE-CCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHc--
Confidence               588999998765543210   011111000011111 111111111  124678999999999999999999999  


Q ss_pred             cCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          325 QGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       325 ~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                         |++.+.|+++|++|+++||||..+
T Consensus       294 ---gi~~~~i~~~L~~f~~~~gR~e~v  317 (451)
T 3lk7_A          294 ---GISNQVIRETLSNFGGVKHRLQSL  317 (451)
T ss_dssp             ---TCCHHHHHHHHHHCCCCTTSSEEE
T ss_pred             ---CCCHHHHHHHHHhCCCCCCcEEEE
Confidence               999999999999999999999764

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=99.98  E-value=5.2e-32  Score=272.79  Aligned_cols=210  Identities=19%  Similarity=0.159  Sum_probs=148.0

Q ss_pred             hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (353)
Q Consensus        77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (353)
                      +.++..+.+.++    ..++||||||||||||++||++||+++|+++.+.             ++  |...+...     
T Consensus       105 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~-----  160 (475)
T 1p3d_A          105 IQRAQMLAEIMR----FRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFV-------------NG--GLVKSAGK-----  160 (475)
T ss_dssp             EEHHHHHHHHHH----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred             EEHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Cccccccc-----
Confidence            555655555554    2589999999999999999999999999873221             22  22221100     


Q ss_pred             HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCC
Q 018577          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (353)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~t  236 (353)
                                       +             ....++|++|+|+|.   .|.++..  .+|+++|||||++||+|+||+|
T Consensus       161 -----------------~-------------~~~~~~d~~VlE~~~---~~~~~~~--~~p~vaviTNI~~DHld~~G~t  205 (475)
T 1p3d_A          161 -----------------N-------------AHLGASRYLIAEADE---SDASFLH--LQPMVSVVTNMEPDHMDTYEGD  205 (475)
T ss_dssp             -----------------E-------------EECCSSSEEEEECCC---TTSGGGG--CCCSEEEECCCCCCSGGGGTTC
T ss_pred             -----------------c-------------cccCCCCEEEEEecC---CcCcccc--ccCCEEEEcCCChhhhhhhcCC
Confidence                             0             012468999999974   4556543  3578999999999999999779


Q ss_pred             HHHHHHHHHhccc---C-CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEe---ec---ceeeee---eeeeee
Q 018577          237 LETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQA---ER---DLKLSI---ELLDVK  300 (353)
Q Consensus       237 le~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~---~~---~~~~~~---~~~~~~  300 (353)
                      +|+|+++|++++.   + +..|+|.|||.+..++....   ..++..- ..++....   ..   .|.+..   ....++
T Consensus       206 ~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~  284 (475)
T 1p3d_A          206 FEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSE-QADYRIEDYEQTGFQGHYTVICPNNERINVL  284 (475)
T ss_dssp             HHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESST-TCSEEEEEEEEETTEEEEEEECTTCCEEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCC-CCcEEEEEEEEcCCceEEEEEECCCeEEEEE
Confidence            9999999998864   3 45688999998776665421   1111100 01222211   11   122211   113678


Q ss_pred             eCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          301 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       301 l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++++|.||++|+++|++++..+     |++.+.|+++|++|.++||||..+
T Consensus       285 l~l~G~hn~~NalaAia~~~~l-----gi~~~~i~~~L~~f~~~~gR~e~v  330 (475)
T 1p3d_A          285 LNVPGKHNALNATAALAVAKEE-----GIANEAILEALADFQGAGRRFDQL  330 (475)
T ss_dssp             ESSCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred             EcCccHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence            9999999999999999999999     999999999999998899999764

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=99.98  E-value=4.6e-32  Score=274.27  Aligned_cols=210  Identities=21%  Similarity=0.214  Sum_probs=147.6

Q ss_pred             hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (353)
Q Consensus        77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (353)
                      +.++..+.+.++    ..++||||||||||||++||++||+++|+++.+.             ++  |...+...     
T Consensus       106 l~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~-------------ig--g~~~~~~~-----  161 (491)
T 2f00_A          106 IRRAEMLAELMR----FRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFV-------------NG--GLVKAAGV-----  161 (491)
T ss_dssp             EEHHHHHHHHHT----TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE-------------EE--EEETTTTE-----
T ss_pred             EEHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEE-------------EC--Ceeccccc-----
Confidence            455555555554    2589999999999999999999999999863221             22  22221100     


Q ss_pred             HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCC
Q 018577          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (353)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~t  236 (353)
                                       +             ....++|++|+|+|   +.|.++..  .+|+++|||||++||+|+||+|
T Consensus       162 -----------------~-------------~~~~~~d~~VlE~~---~~~~~~~~--~~p~vaviTNI~~DHld~~G~t  206 (491)
T 2f00_A          162 -----------------H-------------ARLGHGRYLIAEAD---ESDASFLH--LQPMVAIVTNIEADHMDTYQGD  206 (491)
T ss_dssp             -----------------E-------------EECCSSSEEEEECC---CTTSGGGG--CCCSEEEECCCCSCSGGGTTTC
T ss_pred             -----------------c-------------ccCCCCCEEEEEeC---CCccchhc--CCCCEEEEcCCChhhhhhhcCC
Confidence                             0             01246899999997   44556643  3578999999999999999779


Q ss_pred             HHHHHHHHHhccc---C-CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEe---ec---ceeeee---eeeeee
Q 018577          237 LETIAMAKSGIIK---Y-GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQA---ER---DLKLSI---ELLDVK  300 (353)
Q Consensus       237 le~ia~~Ka~Iik---~-g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~---~~---~~~~~~---~~~~~~  300 (353)
                      +|+|+++|++++.   + +..|+|.|||.+..++....   ..++.. ...++....   ..   .|.+..   ....++
T Consensus       207 ~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (491)
T 2f00_A          207 FENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFS-EDADVRVEDYQQIGPQGHFTLLRQDKEPMRVT  285 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSEEEEEESS-TTCSEEEEEEEEETTEEEEEEECTTSCCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhcCCcEEEEeCC-CCCCEEEEEEEEcCCceEEEEEECCceEEEEE
Confidence            9999999999874   3 45688999987766554320   111110 001222111   11   122211   113678


Q ss_pred             eCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          301 LCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       301 l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++++|.||++|+++|++++..+     |++.+.|+++|++|.+|||||..+
T Consensus       286 l~l~G~hn~~NalaAia~a~~l-----gi~~~~i~~~L~~f~~~~gR~e~v  331 (491)
T 2f00_A          286 LNAPGRHNALNAAAAVAVATEE-----GIDDEAILRALESFQGTGRRFDFL  331 (491)
T ss_dssp             ESSCSHHHHHHHHHHHHHHHHH-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred             EccchHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCCCCEEE
Confidence            9999999999999999999999     999999999999998899999764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=99.98  E-value=5.4e-32  Score=260.29  Aligned_cols=201  Identities=16%  Similarity=0.129  Sum_probs=140.6

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      ..++|+||||||||||+.||++||+.+|++++....--..+++....   +|.|.+.                       
T Consensus       107 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~---~~~p~~~-----------------------  160 (326)
T 3eag_A          107 HHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSAR---LPQTPRQ-----------------------  160 (326)
T ss_dssp             GSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEE---CCCCCSS-----------------------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCccee---cCCcccc-----------------------
Confidence            46899999999999999999999999999886532210011111000   1233221                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccccccccc--ccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY  250 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~--~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~  250 (353)
                                     ....+.|++|+|+|+.+......+++  ..+|+++|||||++||+|+|| |+|+|+++|++|++.
T Consensus       161 ---------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~  224 (326)
T 3eag_A          161 ---------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRT  224 (326)
T ss_dssp             ---------------CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTT
T ss_pred             ---------------ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHh
Confidence                           13567999999999865433333221  246899999999999999998 999999999999973


Q ss_pred             ----CCceeecCchhHHHHHHHhH----HhcCCCCcccceEEEe---ecceeeeee---eeeeeeCCCchHHHHHHHHHH
Q 018577          251 ----GRPVVSAYDAGIRATINGLS----MFNDRPCQSCDIIVQA---ERDLKLSIE---LLDVKLCMIGNHQLHNALTAT  316 (353)
Q Consensus       251 ----g~~vv~~dd~~~~~~~~~~~----~~~~~~~~~~d~~~~~---~~~~~~~~~---~~~~~l~l~G~hq~~Na~~Al  316 (353)
                          +..|+|.|||....++...+    ..++.   ..++....   .+.|.+...   ...++++++|.||++|+++|+
T Consensus       225 ~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~---~~d~~~~~~~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAi  301 (326)
T 3eag_A          225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT---EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI  301 (326)
T ss_dssp             SCTTSEEEEESSCHHHHHHHTTCCCSCEEEESS---SSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCHHHHHHHhhccCCCEEEECC---CCcEEEEEecCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHH
Confidence                44589999998776654321    11221   11332211   111222211   246789999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHhcCCC
Q 018577          317 CAALCLRDQGGYLMLSYFLSGFREEHF  343 (353)
Q Consensus       317 aaa~~l~~~~~gi~~~~I~~gL~~~~~  343 (353)
                      ++|..+     |++.+.|+++|++|++
T Consensus       302 a~a~~l-----Gi~~~~i~~~L~~f~g  323 (326)
T 3eag_A          302 AAARHV-----GVDIQTACEALGAFKN  323 (326)
T ss_dssp             HHHHHH-----TCCHHHHHHHHHTCCC
T ss_pred             HHHHHc-----CCCHHHHHHHHHhCCC
Confidence            999999     9999999999999953

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=99.97  E-value=1.1e-31  Score=271.84  Aligned_cols=197  Identities=20%  Similarity=0.203  Sum_probs=142.2

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||+.||++||+.+|+++...+..         ..|++|.+.                          
T Consensus       122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg---------~~~~~g~~~--------------------------  166 (494)
T 4hv4_A          122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGG---------LVKAAGTHA--------------------------  166 (494)
T ss_dssp             SEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEE---------EETTTTEEE--------------------------
T ss_pred             CCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECC---------ccccccccc--------------------------
Confidence            479999999999999999999999999864322111         012222221                          


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC---
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---  250 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~---  250 (353)
                                     ...+.|++|+|+|.++.   +..  ..+|+++|||||++||+|+||+|+|+|+++|++|++.   
T Consensus       167 ---------------~~~~~d~~VlE~~e~~~---s~~--~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~  226 (494)
T 4hv4_A          167 ---------------RLGSSRYLIAEADESDA---SFL--HLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPF  226 (494)
T ss_dssp             ---------------ECCSSSEEEEECCCGGG---GGG--GCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCT
T ss_pred             ---------------ccCCCcEEEEEcccccc---ccc--cccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCC
Confidence                           12458999999986543   322  3458999999999999999977999999999999975   


Q ss_pred             -CCceeecCchhHHHHHHHhH---HhcCCCCcccceEEEe---ec---ceeeee---eeeeeeeCCCchHHHHHHHHHHH
Q 018577          251 -GRPVVSAYDAGIRATINGLS---MFNDRPCQSCDIIVQA---ER---DLKLSI---ELLDVKLCMIGNHQLHNALTATC  317 (353)
Q Consensus       251 -g~~vv~~dd~~~~~~~~~~~---~~~~~~~~~~d~~~~~---~~---~~~~~~---~~~~~~l~l~G~hq~~Na~~Ala  317 (353)
                       +..|+|.|||.+..+++...   ..++.. ...++....   ..   .|.+..   ....++++++|.||++|+++|++
T Consensus       227 ~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia  305 (494)
T 4hv4_A          227 YGRAVMCIDDPVVRELLPRVGRHITTYGFS-DDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVA  305 (494)
T ss_dssp             TCEEEEETTSHHHHHHGGGCCSCEEEEESS-TTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHhcCCCEEEEecC-CCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHH
Confidence             45699999998776654321   111110 011222211   11   122221   13457899999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          318 AALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       318 aa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      ++..+     |++.+.|+++|++|+++||||..+
T Consensus       306 ~a~~l-----gi~~~~i~~~L~~f~g~~~R~e~v  334 (494)
T 4hv4_A          306 VATEE-----GIEDEDILRALVGFQGTGRRFDFL  334 (494)
T ss_dssp             HHHHH-----TCCHHHHHHHHHHCCCBTTSSEEE
T ss_pred             HHHHc-----CCCHHHHHHHHHhCCCCCCccEEe
Confidence            99999     999999999999998899999764

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=99.97  E-value=1.9e-31  Score=271.78  Aligned_cols=215  Identities=17%  Similarity=0.156  Sum_probs=140.8

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEe--------cCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHH
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY--------TSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLD  164 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~--------tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~  164 (353)
                      ..++|+||||||||||+.||++||+++|++++..        +||..  ++     +++|.+...               
T Consensus       121 ~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~~T~~n--ln-----~~ig~~~~~---------------  178 (524)
T 3hn7_A          121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTN--LQ-----QVFAHSSYL---------------  178 (524)
T ss_dssp             GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCHH--HH-----HHTTSSEEC---------------
T ss_pred             cCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccccCchh--hh-----hhhhhHHhh---------------
Confidence            4689999999999999999999999999988642        22210  00     111222100               


Q ss_pred             HHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCccccccccc--ccCCcEEEEccCChhhHhhhCCCHHHHHH
Q 018577          165 EAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS--SSGLAASVITTIGEEHTAALGGSLETIAM  242 (353)
Q Consensus       165 ~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~--~~~p~vaVITnI~~DHl~~lG~tle~ia~  242 (353)
                           +....+.           ..+.++|++|+|+++.+......++.  ..+|+++|||||++||+|+|| |+|+|++
T Consensus       179 -----~~~~~~~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~  241 (524)
T 3hn7_A          179 -----GTEKDDS-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQT  241 (524)
T ss_dssp             -----CCCCCSS-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHH
T ss_pred             -----CCCcccc-----------cccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHH
Confidence                 0000000           01234689999999876544433322  246899999999999999998 9999999


Q ss_pred             HHHhcccC----CCceeecCchhHHHHHHHhHH----hcCCC-------------C------cccceEEEe---ec-cee
Q 018577          243 AKSGIIKY----GRPVVSAYDAGIRATINGLSM----FNDRP-------------C------QSCDIIVQA---ER-DLK  291 (353)
Q Consensus       243 ~Ka~Iik~----g~~vv~~dd~~~~~~~~~~~~----~~~~~-------------~------~~~d~~~~~---~~-~~~  291 (353)
                      +|++|++.    +..|+|.|||.+..+....+.    .++..             .      ...++....   .+ .|.
T Consensus       242 aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~  321 (524)
T 3hn7_A          242 QFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFT  321 (524)
T ss_dssp             HHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEE
T ss_pred             HHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEE
Confidence            99999973    456999999987766543210    11100             0      011222111   11 122


Q ss_pred             eee--e---eeeeeeCCCchHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCCCcceeec
Q 018577          292 LSI--E---LLDVKLCMIGNHQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEHFWRAEIFLM  351 (353)
Q Consensus       292 ~~~--~---~~~~~l~l~G~hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~~pgR~~~~  351 (353)
                      +..  .   ...++++++|.||++|+++|++++..+     |++.+.|+++|++|+++||||..+
T Consensus       322 l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l-----gi~~~~i~~~L~~~~~~~gR~e~~  381 (524)
T 3hn7_A          322 VSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNI-----GVSVKTACAALSAFAGIKRRMELI  381 (524)
T ss_dssp             EEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHTCCCBTTSSEEE
T ss_pred             EEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHc-----CCCHHHHHHHHHhCCCCCceEEEE
Confidence            221  1   246789999999999999999999999     999999999999998899999765

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=95.85  E-value=0.018  Score=55.07  Aligned_cols=35  Identities=26%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      .+.|.|+||   -||++|+..|...|++.|++++.+.+
T Consensus       152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~t  189 (349)
T 2obn_A          152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLAT  189 (349)
T ss_dssp             SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred             ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEec
Confidence            578999998   69999999999999999999998654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.19  E-value=0.067  Score=45.83  Aligned_cols=32  Identities=22%  Similarity=0.462  Sum_probs=28.3

Q ss_pred             cEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|+   |-.||||++..|+..|...|++|.+.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli   36 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV   36 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            678888   45779999999999999999999874

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.19  E-value=0.043  Score=51.62  Aligned_cols=34  Identities=26%  Similarity=0.214  Sum_probs=30.8

Q ss_pred             CCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.|+|+|+|  --|||||+.-|+..|.+.|+||++.
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI   82 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI   82 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence            568999996  5689999999999999999999885

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=93.76  E-value=0.16  Score=45.54  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|++   -.||||++..|+..|...|++|.+.
T Consensus         3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   37 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            5677765   4689999999999999999999875

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=93.37  E-value=0.53  Score=46.21  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             CcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEec
Q 018577           94 FKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        94 ~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..+|.++|-+  |||||+..|+..|...|++|.+.+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~  132 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA  132 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            5689999964  699999999999999999998754

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=93.31  E-value=0.075  Score=47.52  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        92 ~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      .+.+.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus         2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K   40 (228)
T 3of5_A            2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK   40 (228)
T ss_dssp             TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence            35688999998   6999999999999999999999874

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.07  E-value=0.9  Score=44.70  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=29.7

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      .++|.++|.  .|||||+.-|+..|...|++|.+..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~  135 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC  135 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            568888886  5799999999999999999998754

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=92.43  E-value=0.51  Score=50.13  Aligned_cols=35  Identities=11%  Similarity=0.014  Sum_probs=31.3

Q ss_pred             CCcEEEEcCC---CCchHHHHHHHHHHHHc-----CCCeEEec
Q 018577           93 KFKTVHIAGT---KGKGSTAAFLSSILRAE-----GYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~-----G~~vg~~t  127 (353)
                      ..+.|-|+||   .|||+++.-|..+|+..     |++|+.|-
T Consensus        33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK   75 (831)
T 4a0g_A           33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK   75 (831)
T ss_dssp             SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence            3578999998   69999999999999999     99999884

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=92.30  E-value=0.1  Score=45.43  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=28.4

Q ss_pred             cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|+++   .||||++.-|+..|.+.|+||.++
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~   36 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            56788776   689999999999999999999885

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=91.92  E-value=0.18  Score=43.01  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..++|.|+|..  ||||++..|...|...|++|+.+.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            46899999974  999999999999999999998865

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=91.43  E-value=0.3  Score=46.65  Aligned_cols=37  Identities=32%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (353)
Q Consensus        93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tSp  129 (353)
                      +.+.|.|+||   -|||+|+..|...|++.|++++.+.+.
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg  207 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG  207 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC
Confidence            3678999998   699999999999999999999987654

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=91.11  E-value=0.2  Score=45.46  Aligned_cols=36  Identities=31%  Similarity=0.403  Sum_probs=32.2

Q ss_pred             CCCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEec
Q 018577           92 SKFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        92 ~~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      .+.+.|-||||.   |||+++..|...|++.|++|+.|-
T Consensus        24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK   62 (251)
T 3fgn_A           24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK   62 (251)
T ss_dssp             SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            456889999984   999999999999999999999874

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=90.72  E-value=0.5  Score=43.10  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           90 PHSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        90 p~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +....++|.||++   -||||++.-|+..|.+.|+||.+.
T Consensus        78 ~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI  117 (271)
T 3bfv_A           78 PDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV  117 (271)
T ss_dssp             TTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            3456789999976   689999999999999999999874

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=90.63  E-value=0.23  Score=44.87  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=31.6

Q ss_pred             CCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..+.|-||||   .|||+++..|...|++.|++|+.|-
T Consensus        20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK   57 (242)
T 3qxc_A           20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK   57 (242)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence            3578999998   7999999999999999999999874

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=90.30  E-value=0.45  Score=45.64  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHcCCC-----CCCCcEEEEcC---CCCchHHHHHHHHHHH------HcCCCeEEe
Q 018577           76 DLGRMNRLMDRLGNP-----HSKFKTVHIAG---TKGKGSTAAFLSSILR------AEGYSVGCY  126 (353)
Q Consensus        76 ~l~r~~~~l~~lg~p-----~~~~~vI~VtG---TnGKtSTt~ml~~IL~------~~G~~vg~~  126 (353)
                      .++.+..+...++.+     ....++|+|++   --||||++..|+..|.      ..|++|.+.
T Consensus        85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli  149 (398)
T 3ez2_A           85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI  149 (398)
T ss_dssp             CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred             CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence            688898888887543     34578999985   4689999999999998      469999773

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=90.04  E-value=0.29  Score=42.90  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=28.0

Q ss_pred             cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|+++   .||||++..|+..|.+.|++|.+.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            57888765   589999999999999999999875

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=89.83  E-value=0.34  Score=44.90  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ....++|.||++   -||||++.-|+..|.+.|++|.+.
T Consensus       101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI  139 (299)
T 3cio_A          101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI  139 (299)
T ss_dssp             SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            345689999976   589999999999999999999874

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.51  E-value=0.29  Score=43.08  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=29.4

Q ss_pred             CCcEEEEc---CCCCchHHHHHHHHHHHHc-CCCeEEe
Q 018577           93 KFKTVHIA---GTKGKGSTAAFLSSILRAE-GYSVGCY  126 (353)
Q Consensus        93 ~~~vI~Vt---GTnGKtSTt~ml~~IL~~~-G~~vg~~  126 (353)
                      ..++|.|+   |-.||||++..|+..|... |++|.+.
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli   40 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV   40 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence            45788888   4578999999999999998 9999875

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=89.49  E-value=0.31  Score=43.61  Aligned_cols=34  Identities=32%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             CCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEe
Q 018577           93 KFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        93 ~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.++|.|++.+   ||||++..|+..|...|++|.+.
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   41 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV   41 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence            45899998654   79999999999999999999874

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=89.19  E-value=1.5  Score=44.23  Aligned_cols=34  Identities=35%  Similarity=0.503  Sum_probs=30.0

Q ss_pred             cEEEEc-CC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        95 ~vI~Vt-GT---nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      +.|-|+ ||   -|||.+++-|..+|+..|++|..|-+
T Consensus         4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~   41 (545)
T 1s1m_A            4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKL   41 (545)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeec
Confidence            567788 65   79999999999999999999988855

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=88.52  E-value=2  Score=43.43  Aligned_cols=34  Identities=41%  Similarity=0.592  Sum_probs=30.4

Q ss_pred             cEEEEc-CC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           95 KTVHIA-GT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        95 ~vI~Vt-GT---nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      +.|-|+ ||   -|||.+++-|..+|+..|++|..|-+
T Consensus        13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~   50 (550)
T 1vco_A           13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKI   50 (550)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeec
Confidence            678888 65   79999999999999999999988855

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=88.17  E-value=0.56  Score=43.18  Aligned_cols=36  Identities=14%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..+.++|.||++   -||||++.-|+..|.+.|++|.+.
T Consensus        89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI  127 (286)
T 3la6_A           89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI  127 (286)
T ss_dssp             TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            345689999876   589999999999999999999774

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=88.05  E-value=0.47  Score=42.04  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|+|+++   .||||++..|+..|...|++|.+.
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli   37 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI   37 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence            57888654   689999999999999999999874

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=87.79  E-value=0.49  Score=43.20  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=28.1

Q ss_pred             cEEEEcC---CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAG---TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtG---TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|++   -.||||++..|+..|...|++|.+.
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli   39 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI   39 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            5889985   5689999999999999999999773

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=87.61  E-value=0.45  Score=42.66  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             CCCcEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEe
Q 018577           92 SKFKTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        92 ~~~~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.++|.|++.+   ||||++..|+..|. .|++|.+.
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli   61 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI   61 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence            456899997764   79999999999999 99999774

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=87.46  E-value=0.67  Score=41.59  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .++|.|+++   .||||++..|+..|...|++|.+.
T Consensus        18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli   53 (262)
T 2ph1_A           18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL   53 (262)
T ss_dssp             SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            468888876   579999999999999999999874

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=87.30  E-value=1.5  Score=37.81  Aligned_cols=46  Identities=22%  Similarity=0.369  Sum_probs=33.2

Q ss_pred             HHHHHHHcCCCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEE
Q 018577           80 MNRLMDRLGNPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGC  125 (353)
Q Consensus        80 ~~~~l~~lg~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~  125 (353)
                      +.++.+++-....+..+|+|.|-|  ||||++.+|..++...|..+|.
T Consensus         8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~   55 (208)
T 3c8u_A            8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEV   55 (208)
T ss_dssp             HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence            344555554323455799999975  8999999999999976655655

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=87.28  E-value=0.71  Score=44.35  Aligned_cols=52  Identities=12%  Similarity=0.155  Sum_probs=35.7

Q ss_pred             CChHHHHHHHHHcCCCC-----CCCcEEEEc---CCCCchHHHHHHHHHHH------HcCCCeEEe
Q 018577           75 FDLGRMNRLMDRLGNPH-----SKFKTVHIA---GTKGKGSTAAFLSSILR------AEGYSVGCY  126 (353)
Q Consensus        75 ~~l~r~~~~l~~lg~p~-----~~~~vI~Vt---GTnGKtSTt~ml~~IL~------~~G~~vg~~  126 (353)
                      ..++.+..+.+..+.+.     ...++|+|+   |--||||++..|+..|.      ..|++|.+.
T Consensus        87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli  152 (403)
T 3ez9_A           87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI  152 (403)
T ss_dssp             BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred             cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence            36788888877766543     457899999   56799999999999998      679999774

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=87.20  E-value=1  Score=40.93  Aligned_cols=44  Identities=16%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHcCCCCCCCcEEEEc-----CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           77 LGRMNRLMDRLGNPHSKFKTVHIA-----GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        77 l~r~~~~l~~lg~p~~~~~vI~Vt-----GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +..+++++..-      .++|.|+     |-.||||++..|+..|...|++|.+.
T Consensus        23 ~~~~~r~~~~~------~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli   71 (298)
T 2oze_A           23 LEELRRILSNK------NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI   71 (298)
T ss_dssp             HHHHHHHHHHH------CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHhcCC------CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence            44566666542      2344444     56899999999999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=85.68  E-value=1.2  Score=38.20  Aligned_cols=47  Identities=28%  Similarity=0.306  Sum_probs=33.6

Q ss_pred             HHHHHHHcC-CCCCCCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577           80 MNRLMDRLG-NPHSKFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        80 ~~~~l~~lg-~p~~~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +..+++.+- .+..+..+|+|+|-+  ||||++.+|...|...|.++...
T Consensus         7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~   56 (201)
T 1rz3_A            7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF   56 (201)
T ss_dssp             HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence            444444432 123345789999975  89999999999998888777553

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=85.52  E-value=0.62  Score=43.15  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             CCcEEEEcCCC--CchHHHHHHHHHHHH-cCCCeEEec
Q 018577           93 KFKTVHIAGTK--GKGSTAAFLSSILRA-EGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~-~G~~vg~~t  127 (353)
                      +..+|+|.|-|  |||||+..|+..+.. .|++|.+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~  141 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT  141 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            34577777754  899999999999985 899998753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=85.42  E-value=0.7  Score=43.33  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577           93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.++|.|+|.+  |||||+..|+..|...|.+|.+.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli  139 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA  139 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            45689999875  89999999999999999999764

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=84.88  E-value=0.93  Score=43.14  Aligned_cols=36  Identities=19%  Similarity=0.089  Sum_probs=30.8

Q ss_pred             CCCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           91 HSKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        91 ~~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..+.++|+|++.   .||||++.-|+..|...|++|.+.
T Consensus       140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli  178 (373)
T 3fkq_A          140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL  178 (373)
T ss_dssp             TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            345789999865   579999999999999999999874

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=84.41  E-value=0.91  Score=39.39  Aligned_cols=30  Identities=33%  Similarity=0.416  Sum_probs=25.5

Q ss_pred             EEEEc---CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           96 TVHIA---GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        96 vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +|.|+   |-.||||++..|+..|...| +|.+.
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli   34 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI   34 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence            56665   66799999999999999999 99773

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=83.49  E-value=1.4  Score=41.10  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=29.1

Q ss_pred             CCcEEEEcCCC--CchHHHHHHHHHHHHcCCCeEEe
Q 018577           93 KFKTVHIAGTK--GKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        93 ~~~vI~VtGTn--GKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ...+|.|+|-|  |||||+..|+..|...|.+|.+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv  138 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA  138 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence            34689999975  79999999999999999898763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=82.14  E-value=1.8  Score=40.76  Aligned_cols=47  Identities=26%  Similarity=0.269  Sum_probs=36.2

Q ss_pred             HHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           80 MNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        80 ~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.+++.+-....+.++|+|+|.  .||||++.-|...|...|++|++.
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi  113 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL  113 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence            44555555333346688999996  689999999999999999999875

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=81.77  E-value=1.4  Score=41.14  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=28.8

Q ss_pred             CCcEEEEc---CCCCchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHIA---GTKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~Vt---GTnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..++|.|+   |--||||++.-++..|.+.|++|.+..
T Consensus        12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD   49 (324)
T 3zq6_A           12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS   49 (324)
T ss_dssp             TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence            33566666   668899999999999999999998753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=80.04  E-value=0.98  Score=38.21  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=23.0

Q ss_pred             cCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577           87 LGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSV  123 (353)
Q Consensus        87 lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~v  123 (353)
                      +|++..+..+|+|+|.  .||||++.+|+..    |+.+
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~   35 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW----GYPV   35 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT----TCCE
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC----CCEE
Confidence            4677777889999996  6999999998874    6553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d2gc6a2	296	c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {	1e-33
d1o5za2	296	c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase	7e-32
d1e8ca3	234	c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid	2e-08
d1p3da3	215	c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine	6e-06
d1gg4a4	214	c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl	2e-05
d1j6ua3	207	c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l	4e-04
d2jfga3	204	c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine	7e-04

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

 Score =  124 bits (310), Expect = 1e-33
 Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 32/298 (10%)

Query: 46  MNF---MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGT 102
           MN+   + Y+ S     K+              D  R+  L+  LGNP  + + +H+ GT
Sbjct: 1   MNYTETVAYIHSFPRLAKT-------------GDHRRILTLLHALGNPQQQGRYIHVTGT 47

Query: 103 KGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGV 162
            GKGS A  ++ +L A G +VG YT+P I    ER+ +     P +A      F +    
Sbjct: 48  NGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALE 107

Query: 163 LDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVI 222
             +  + +    T FE +TA+ +  F Q  VD+AVIE G+GG  D+TN+I+      SV+
Sbjct: 108 RLQQQQADFNV-TEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVITPV---VSVL 163

Query: 223 TTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAG-------IRATINGLSMFNDR 275
           T +  +H   LG ++  IA  K+GIIK G PVV+             +    G       
Sbjct: 164 TEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFD 223

Query: 276 PCQSCDIIVQAERDLKLSIE-----LLDVKLCMIGNHQLHNALTATCAALCLRDQGGY 328
              S           + + E     + D+++ ++G++Q  N   A   A     Q  +
Sbjct: 224 RDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEW 281

>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score =  119 bits (298), Expect = 7e-32
 Identities = 97/285 (34%), Positives = 142/285 (49%), Gaps = 22/285 (7%)

Query: 49  MNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGST 108
           M YL+ L+       P G          L R++ L+ +LGNPH ++KT+HI GT GKGS 
Sbjct: 4   MAYLEVLRYLYHKR-PMGKVK-----PGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSV 57

Query: 109 AAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIR 168
           A  +S+IL ++GY VG Y SPH+ T RER+ +      +S + +  ++  ++ +L+E  +
Sbjct: 58  ANMVSNILVSQGYRVGSYYSPHLSTFRERIRLN--EEYISEEDVVKIYETMEPILNELDK 115

Query: 169 LENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEE 228
            E    + FEV+TAMAF  FA+ +VDIAV+E GLGG  DATN++       S I T+  +
Sbjct: 116 EEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVFP---LCSTIVTVDRD 172

Query: 229 HTAALGGSLETIAMAKSGIIKYGRPVVSAYDA-------GIRATINGLSMFNDRPCQSCD 281
           H   LG ++E IA  KSGIIK   P+V+              A      M+      S  
Sbjct: 173 HEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVIDKDFSVK 232

Query: 282 IIVQAERDLKLSI----ELLDVKLCMIGNHQLHNALTATCAALCL 322
           +      + +          D+ L M G HQ+ NA  A       
Sbjct: 233 VKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEAT 277

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 30/233 (12%), Positives = 61/233 (26%), Gaps = 15/233 (6%)

Query: 90  PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSA 149
           P    + V + GT GK +T   L+   +  G          + T+      G L + +  
Sbjct: 1   PSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAV-----MGTV----GNGLLGKVIPT 51

Query: 150 KALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDAT 209
           +        ++  L   +               +     A      +V       +RD  
Sbjct: 52  ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF---TNLSRDHL 108

Query: 210 NIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGL 269
           +         +    +  EH            + +  + K    V  + +  I    +G 
Sbjct: 109 DYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGR 168

Query: 270 SMFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCL 322
            +                       E   ++  ++G   + N L A    L L
Sbjct: 169 WLKATEVNYHDSGATIRFSSSWGDGE---IESHLMGAFNVSNLLLALATLLAL 218

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.4 bits (104), Expect = 6e-06
 Identities = 35/251 (13%), Positives = 60/251 (23%), Gaps = 70/251 (27%)

Query: 87  LGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRP 146
           L         + +AGT GK +T A +S I               +K+  +  ++G     
Sbjct: 5   LAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYL 64

Query: 147 VSAKALNCLFHKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGAR 206
           +                                    + A F      ++V         
Sbjct: 65  I-------------------------------AEADESDASFLHLQPMVSV--------- 84

Query: 207 DATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGII----KYGRPVVSA----- 257
                          +T +  +H     G  E +       +     YG  V+ A     
Sbjct: 85  ---------------VTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVL 129

Query: 258 ----YDAGIRATINGLS--MFNDRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHN 311
                  G +    G S                     +  + E ++V L + G H   N
Sbjct: 130 MELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALN 189

Query: 312 ALTATCAALCL 322
           A  A   A   
Sbjct: 190 ATAALAVAKEE 200

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 38/229 (16%), Positives = 57/229 (24%), Gaps = 34/229 (14%)

Query: 95  KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNC 154
           + V + G+ GK S     ++IL   G ++                 G LN  +       
Sbjct: 3   RVVALTGSSGKTSVKEMTAAILSQCGNTLY--------------TAGNLNNDIGVPMTLL 48

Query: 155 LFHKIKGVL-DEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIIS 213
                      E      G I     LT    AL              L G   A   I 
Sbjct: 49  RLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIF 108

Query: 214 SSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAYDAGIRATINGLSMFN 273
           S      +     + +          I   K                 I  T +G     
Sbjct: 109 SGLPENGIAIMNADNNDWLN--WQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEF-- 164

Query: 274 DRPCQSCDIIVQAERDLKLSIELLDVKLCMIGNHQLHNALTATCAALCL 322
                           L+     +DV L + G H + NAL A   ++ +
Sbjct: 165 ---------------TLQTPTGSVDVLLPLPGRHNIANALAAAALSMSV 198

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 79  RMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCY 126
           R++   D L     K +   + GT GK +T A ++ +L+    S   +
Sbjct: 1   RLHYFRDTLKR--EKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF 46

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 91  HSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHI 131
            ++   V I G+ GK +    +  + +A G +VG   +  +
Sbjct: 8   EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	100.0
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	100.0
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	100.0
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	99.98
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	99.97
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	99.97
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	99.97
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.76
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.5
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.82
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.7
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.19
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	92.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.92
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.88
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	92.76
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	92.62
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.03
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.85
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.45
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	90.17
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	89.3
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.27
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	88.65
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.03
d1okkd2	207	GTPase domain of the signal recognition particle r	85.91
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	84.71
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	84.41
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	83.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	82.43
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	81.78
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	81.3

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.5e-55  Score=416.81  Aligned_cols=281  Identities=28%  Similarity=0.434  Sum_probs=242.8

Q ss_pred             ccHHHHHHHHHhchhhhhcCCCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCC
Q 018577           43 PELMNFMNYLDSLKNFEKSGVPKGAGTDSDDGFDLGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYS  122 (353)
Q Consensus        43 ~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~  122 (353)
                      |+|+|+++||++++.+.   +          +++|+||+++|++||+|++++++||||||||||||++||++||+++|++
T Consensus         1 m~~~e~~~~l~~~~~~~---~----------~~~l~r~~~~l~~lg~P~~~lkvI~VTGTNGKtST~~~i~~IL~~~G~k   67 (296)
T d2gc6a2           1 MNYTETVAYIHSFPRLA---K----------TGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLT   67 (296)
T ss_dssp             CCHHHHHHHHHTCCCCC----------------CCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHhcCcCC---C----------CCCHHHHHHHHHHcCCchhhCCEEEEeccCcHHHHHHHHHHHHHhcCCc
Confidence            57999999999988653   2          3789999999999999999999999999999999999999999999999


Q ss_pred             eEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHh-hcCCccChhHHHHHHHHHHHhhCCCCEEEEeec
Q 018577          123 VGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIR-LENGCITHFEVLTAMAFALFAQNHVDIAVIEAG  201 (353)
Q Consensus       123 vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~-~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG  201 (353)
                      ||+|+|||+.+++||++++  |.+++++.+...+..+.+.+..+.. .....+++||..++.++.+|.+..+|++|+|+|
T Consensus        68 vG~~tSP~~~~~~e~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~d~~i~e~g  145 (296)
T d2gc6a2          68 VGLYTAPFIMRFNERIMID--HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVG  145 (296)
T ss_dssp             EEEECSSCSSCGGGGEEET--TEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             eeeeecccccchhhhhccc--ccCCcHHHHHHHHHHHHHHHHhHHhhccCCCccHHHHHHHHHHHHHHHhcchhhhhhhH
Confidence            9999999999999999999  9999999999999999998887765 345689999999999999999999999999999


Q ss_pred             CCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCCceeecC-chhHHHHHHHhHHhcCCCCccc
Q 018577          202 LGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGRPVVSAY-DAGIRATINGLSMFNDRPCQSC  280 (353)
Q Consensus       202 ~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~~vv~~d-d~~~~~~~~~~~~~~~~~~~~~  280 (353)
                      +|+++|++|++.   |+++|||||+.||+++||+|+++||.+|++|++++.++|.++ ++.+.+++++.+...++.+...
T Consensus       146 ~g~~~d~~~~~~---~~~~viTni~~dH~~~lg~tle~Ia~~K~~i~k~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~  222 (296)
T d2gc6a2         146 IGGDTDSTNVIT---PVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRF  222 (296)
T ss_dssp             SSSTTSTTCSCC---CSEEEECCCCSTTHHHHCSSHHHHHHHHHTTCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEB
T ss_pred             HHHhhhhhhccc---ceeecccccchHHHHhhhhHHHHHHHhhhcccccccccccccccHHHHHHHHHHHHhhCCccccc
Confidence            999999999875   579999999999999999999999999999999999988764 6777888888887777654332


Q ss_pred             --ceEEEeec------ceeee---eeeeeeeeCCCchHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHhcC
Q 018577          281 --DIIVQAER------DLKLS---IELLDVKLCMIGNHQLHNALTATCAALCLR-DQGGYLMLSYFLSGFREE  341 (353)
Q Consensus       281 --d~~~~~~~------~~~~~---~~~~~~~l~l~G~hq~~Na~~Alaaa~~l~-~~~~gi~~~~I~~gL~~~  341 (353)
                        |+.+....      .+.+.   .....++++|+|.||++||++|++++..|. ..+++++.+.|++||++.
T Consensus       223 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hn~~Na~~Aia~~~~l~~~~~~~i~~e~I~~GL~~~  295 (296)
T d2gc6a2         223 DRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAAS  295 (296)
T ss_dssp             TTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred             CcceeeeccccccCCceEEEEcCCCccCcCCCCCCcHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence              33332211      12222   122468899999999999999999999884 457889999999999874

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-35  Score=263.17  Aligned_cols=215  Identities=19%  Similarity=0.209  Sum_probs=149.2

Q ss_pred             CCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhh
Q 018577           90 PHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRL  169 (353)
Q Consensus        90 p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~  169 (353)
                      |++++++|+||||||||||+.||+++|+++|+++++..+-+..       ++  +.....                    
T Consensus         1 ps~~~~vI~ITGT~GKTTt~~~l~~iL~~~g~~~~~~gt~g~~-------~~--~~~~~~--------------------   51 (234)
T d1e8ca3           1 PSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNG-------LL--GKVIPT--------------------   51 (234)
T ss_dssp             GGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEE-------ET--TCCBCC--------------------
T ss_pred             CCcCCeEEEEECCCcHHHHHHHHHHHHHHCCCCeEEECccccC-------cC--cccccc--------------------
Confidence            6789999999999999999999999999999999987653321       11  111100                    


Q ss_pred             cCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhccc
Q 018577          170 ENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIK  249 (353)
Q Consensus       170 ~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik  249 (353)
                      ....+...+....  +..+...+++++++|++..|.  ........+|+++|||||++||+|+|| ++|+|+.+|+.|++
T Consensus        52 ~~~t~~~~~~~~~--l~~~~~~~~~~~~le~ss~g~--~~~~~~~~~p~i~vitNi~~dHld~~~-~~e~~~~~K~~i~~  126 (234)
T d1e8ca3          52 ENTTGSAVDVQHE--LAGLVDQGATFCAMEVSSHGL--VQHRVAALKFAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYS  126 (234)
T ss_dssp             SSSSCCHHHHHHH--HHHHHHTTCCEEEEECCHHHH--HTTTTTTCBCSEEEECCCCSCCHHHHS-SHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHH--HHHHhhcCCceeeeccCccch--hhhhhcccccceEEEeeccccchhhhc-cccceehhhhcccc
Confidence            0001112222221  234578899999999976553  333334445789999999999999998 99999999999987


Q ss_pred             C---CCceeecCchhHHHHHHHhHHh----cC----CCCcccceEEEe---e-cc--eeee--eeeeeeeeCCCchHHHH
Q 018577          250 Y---GRPVVSAYDAGIRATINGLSMF----ND----RPCQSCDIIVQA---E-RD--LKLS--IELLDVKLCMIGNHQLH  310 (353)
Q Consensus       250 ~---g~~vv~~dd~~~~~~~~~~~~~----~~----~~~~~~d~~~~~---~-~~--~~~~--~~~~~~~l~l~G~hq~~  310 (353)
                      .   +..|+|+|||....+.+.....    ..    ......++....   . ..  +.+.  .....++++++|.||++
T Consensus       127 ~~~~~~~iin~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~G~hni~  206 (234)
T d1e8ca3         127 EHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS  206 (234)
T ss_dssp             TSBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHH
T ss_pred             ccccceeEEecccccchhhhhhhccceeeeeccccccccccccccccccccccccceeeeecCCceEEEEeCCCCHHHHH
Confidence            3   5569999999877665543211    00    011011111111   0 11  1222  23456889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCC
Q 018577          311 NALTATCAALCLRDQGGYLMLSYFLSGFREEHF  343 (353)
Q Consensus       311 Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~~  343 (353)
                      |+++|+++|..+     |++.++|+++|++|+|
T Consensus       207 N~laAiava~~l-----Gi~~~~i~~~l~~fkP  234 (234)
T d1e8ca3         207 NLLLALATLLAL-----GYPLADLLKTAARLQP  234 (234)
T ss_dssp             HHHHHHHHHHHT-----TCCHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHc-----CCCHHHHHHHHhhCCC
Confidence            999999999999     9999999999999865

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=8.8e-33  Score=244.96  Aligned_cols=187  Identities=21%  Similarity=0.181  Sum_probs=135.7

Q ss_pred             CCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCC
Q 018577           93 KFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENG  172 (353)
Q Consensus        93 ~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~  172 (353)
                      +.|+|+||||||||||++||+++|+++|+++++..+              +|.|...                       
T Consensus        10 ~~~vI~VTGT~GKTTt~~~l~~iL~~~g~~~~~~~~--------------~~~~~~~-----------------------   52 (204)
T d2jfga3          10 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN--------------IGLPALM-----------------------   52 (204)
T ss_dssp             CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEET--------------TSSCGGG-----------------------
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHhcCCCcccCCc--------------ccccccc-----------------------
Confidence            468999999999999999999999999999986432              3444321                       


Q ss_pred             ccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccCCC
Q 018577          173 CITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKYGR  252 (353)
Q Consensus       173 ~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~g~  252 (353)
                                     ....+.|++|+|+|..+..+    +...+|+++|||||++||+|++|++++++...|..+++++.
T Consensus        53 ---------------~~~~~~~~~V~E~~~~~~~~----~~~~~p~i~viTNi~~dHld~~~~~~~~~~~~~~~i~~~~~  113 (204)
T d2jfga3          53 ---------------LLDDECELYVLELSSFQLET----TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK  113 (204)
T ss_dssp             ---------------GCCTTCCEEEEECCHHHHHT----CCCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCS
T ss_pred             ---------------cccccceEEEEeeccccccc----ccccccccceeeeeccccccccccHHHHHHHHHHhhhcccc
Confidence                           23568999999998765432    33456899999999999999998679999999999998865


Q ss_pred             c-eeecCchhHHHHHHHh--HHhcCCCCcccceEEEeecc-eeeee----eeeeeeeCCCchHHHHHHHHHHHHHHHHHh
Q 018577          253 P-VVSAYDAGIRATINGL--SMFNDRPCQSCDIIVQAERD-LKLSI----ELLDVKLCMIGNHQLHNALTATCAALCLRD  324 (353)
Q Consensus       253 ~-vv~~dd~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~-~~~~~----~~~~~~l~l~G~hq~~Na~~Alaaa~~l~~  324 (353)
                      . |+|.||+....+....  ...++..  ..++....... .....    .....+++++|.||++|+++|+++|..+  
T Consensus       114 ~~v~n~dd~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~a~~l--  189 (204)
T d2jfga3         114 VCVVNADDALTMPIRGADERCVSFGVN--MGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA--  189 (204)
T ss_dssp             EEEEETTCGGGSCTTCCCTTEEEECSS--SSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT--
T ss_pred             ceeehhhhHHHHHHHccCCceEEeecc--ccchhhcccccccceeecCCccccccccCCCcHHHHHHHHHHHHHHHHc--
Confidence            5 7788887644321111  1112211  12333222211 11111    1112368999999999999999999999  


Q ss_pred             cCCCCCHHHHHHHHhcCC
Q 018577          325 QGGYLMLSYFLSGFREEH  342 (353)
Q Consensus       325 ~~~gi~~~~I~~gL~~~~  342 (353)
                         |++.+.|+++|++|+
T Consensus       190 ---Gi~~~~i~~~L~~Ft  204 (204)
T d2jfga3         190 ---GLPRASSLKALTTFT  204 (204)
T ss_dssp             ---TCCHHHHHHHHHHCC
T ss_pred             ---CCCHHHHHHHHHhcC
Confidence               999999999999883

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.9e-32  Score=241.07  Aligned_cols=195  Identities=22%  Similarity=0.263  Sum_probs=136.3

Q ss_pred             cEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 018577           95 KTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGCI  174 (353)
Q Consensus        95 ~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~~  174 (353)
                      |+|+||||||||||++||++||+.+|+++++..+              ++.++....                       
T Consensus         3 kvI~VTGTnGKTTt~~mi~~iL~~~g~~~~~~g~--------------~n~~~g~~~-----------------------   45 (214)
T d1gg4a4           3 RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN--------------LNNDIGVPM-----------------------   45 (214)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTT--------------CCSTTHHHH-----------------------
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHHhCCCCEEEeCc--------------ccCccccch-----------------------
Confidence            7999999999999999999999999998876332              122221100                       


Q ss_pred             ChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC----
Q 018577          175 THFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY----  250 (353)
Q Consensus       175 t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~----  250 (353)
                                .......+.++.++|++.....+...++....|+++|||||++||+|++| ++++|+++|+.+++.    
T Consensus        46 ----------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~p~~~viTNi~~dHld~~~-~~~~~~~~k~~~~~~~~~~  114 (214)
T d1gg4a4          46 ----------TLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLPEN  114 (214)
T ss_dssp             ----------HHTTCCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC---------CHHHHHHHHHGGGGGCCTT
T ss_pred             ----------hhhhcccccccchhhhhhhhcccccccccccCchheeeehhccccccccc-cHHHHHhhhhhHhhhhccC
Confidence                      01234567899999998887776766666667899999999999999997 899999999999864    


Q ss_pred             CCceeecCchhHHHHHHHhHH----hcCCCCcccceEEEe-----ec-ceeeee--eeeeeeeCCCchHHHHHHHHHHHH
Q 018577          251 GRPVVSAYDAGIRATINGLSM----FNDRPCQSCDIIVQA-----ER-DLKLSI--ELLDVKLCMIGNHQLHNALTATCA  318 (353)
Q Consensus       251 g~~vv~~dd~~~~~~~~~~~~----~~~~~~~~~d~~~~~-----~~-~~~~~~--~~~~~~l~l~G~hq~~Na~~Alaa  318 (353)
                      |..|+|.||+...........    .++..-...|+....     .. .+.+..  ...++++|++|.||++|+++|+++
T Consensus       115 g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ad~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hn~~NalaAia~  194 (214)
T d1gg4a4         115 GIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAAL  194 (214)
T ss_dssp             CEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHH
T ss_pred             CccccccccHHHHHHHHHhcCCceeeeccCCCCcceeeeeEEEeCCceEEEEEECCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            456999999887665543311    122111112332221     11 122222  345688999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHhcCC
Q 018577          319 ALCLRDQGGYLMLSYFLSGFREEH  342 (353)
Q Consensus       319 a~~l~~~~~gi~~~~I~~gL~~~~  342 (353)
                      +..+     |++.+.|.++|++|+
T Consensus       195 ~~~l-----gi~~~~i~~~l~~fk  213 (214)
T d1gg4a4         195 SMSV-----GATLDAIKAGLANLK  213 (214)
T ss_dssp             HHHT-----TCCHHHHHHHHTTCC
T ss_pred             HHHc-----CCCHHHHHHHHHhcC
Confidence            9999     999999999999985

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=9.7e-32  Score=240.28  Aligned_cols=189  Identities=18%  Similarity=0.171  Sum_probs=134.4

Q ss_pred             CcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCc
Q 018577           94 FKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLFHKIKGVLDEAIRLENGC  173 (353)
Q Consensus        94 ~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~~~i~~~~~~~~~~~~~~  173 (353)
                      .++|+||||||||||+.||+++|+++|++++...+.....+         +.+.                          
T Consensus        12 ~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~---------~~~~--------------------------   56 (215)
T d1p3da3          12 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSA---------GKNA--------------------------   56 (215)
T ss_dssp             SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTT---------TEEE--------------------------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccC---------cccc--------------------------
Confidence            47999999999999999999999999999876433211111         1111                          


Q ss_pred             cChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCCHHHHHHHHHhcccC---
Q 018577          174 ITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGSLETIAMAKSGIIKY---  250 (353)
Q Consensus       174 ~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~tle~ia~~Ka~Iik~---  250 (353)
                                     .....+++|+|++.....     +...+|+++|||||++||+|++++++|+|+++|+.|++.   
T Consensus        57 ---------------~~~~~~~~v~E~~~~~~~-----~~~~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~  116 (215)
T d1p3da3          57 ---------------HLGASRYLIAEADESDAS-----FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPF  116 (215)
T ss_dssp             ---------------ECCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCT
T ss_pred             ---------------ccCCCceEEEEcCCcccc-----ceeEcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCC
Confidence                           124568999999876432     112468999999999999998866999999999999874   


Q ss_pred             -CCceeecCchhHHHHHHHhH---HhcCCC----CcccceEEEeecc-ee-e--eeeeeeeeeCCCchHHHHHHHHHHHH
Q 018577          251 -GRPVVSAYDAGIRATINGLS---MFNDRP----CQSCDIIVQAERD-LK-L--SIELLDVKLCMIGNHQLHNALTATCA  318 (353)
Q Consensus       251 -g~~vv~~dd~~~~~~~~~~~---~~~~~~----~~~~d~~~~~~~~-~~-~--~~~~~~~~l~l~G~hq~~Na~~Alaa  318 (353)
                       +..|+|.||+.......+..   ..++..    ....++....... +. .  .....++.+|++|.||++|+++|+++
T Consensus       117 ~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N~laAia~  196 (215)
T d1p3da3         117 YGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAV  196 (215)
T ss_dssp             TCEEEEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcchHHHHHHHhcCCceEEEcccccccccccccccccccccccccccccceeeEEeCCCCHHHHHHHHHHHHH
Confidence             35689999988776655431   112211    1111111111111 11 1  12345688999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHhcCC
Q 018577          319 ALCLRDQGGYLMLSYFLSGFREEH  342 (353)
Q Consensus       319 a~~l~~~~~gi~~~~I~~gL~~~~  342 (353)
                      |..+     |++.++|+++|++|+
T Consensus       197 a~~l-----Gi~~~~i~~~L~~Fk  215 (215)
T d1p3da3         197 AKEE-----GIANEAILEALADFQ  215 (215)
T ss_dssp             HHHT-----TCCHHHHHHHHHTCC
T ss_pred             HHHc-----CCCHHHHHHHHHhcC
Confidence            9999     999999999999873

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=2.7e-31  Score=236.38  Aligned_cols=196  Identities=19%  Similarity=0.151  Sum_probs=139.8

Q ss_pred             hHHHHHHHHHcCCCCCCCcEEEEcCCCCchHHHHHHHHHHHHcCCCeEEecCCcccccceeeeeCCCCcccCHHHHHHHH
Q 018577           77 LGRMNRLMDRLGNPHSKFKTVHIAGTKGKGSTAAFLSSILRAEGYSVGCYTSPHIKTIRERMNVGRLNRPVSAKALNCLF  156 (353)
Q Consensus        77 l~r~~~~l~~lg~p~~~~~vI~VtGTnGKtSTt~ml~~IL~~~G~~vg~~tSp~l~~~~eri~in~~G~~is~~~~~~~~  156 (353)
                      |+.++.+|++     .+.++|+||||||||||+.||+++|++.|++++.+             +++++.++..       
T Consensus         2 ~~~~~~~l~~-----~~~~~iAITGTnGKTTt~~~l~~iL~~~g~~~~~~-------------~g~~~~~~~~-------   56 (207)
T d1j6ua3           2 LHYFRDTLKR-----EKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF-------------LGGIMDSLEH-------   56 (207)
T ss_dssp             HHHHHHHHHH-----HCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEE-------------CSSCCTTSTT-------
T ss_pred             hHHHHHHHhh-----cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEE-------------ECCccccccc-------
Confidence            4556666665     35589999999999999999999999999987653             2322333321       


Q ss_pred             HHHHHHHHHHHhhcCCccChhHHHHHHHHHHHhhCCCCEEEEeecCCCcccccccccccCCcEEEEccCChhhHhhhCCC
Q 018577          157 HKIKGVLDEAIRLENGCITHFEVLTAMAFALFAQNHVDIAVIEAGLGGARDATNIISSSGLAASVITTIGEEHTAALGGS  236 (353)
Q Consensus       157 ~~i~~~~~~~~~~~~~~~t~FE~~t~~a~~~f~~~~~d~~VlEvG~gg~~D~tn~v~~~~p~vaVITnI~~DHl~~lG~t  236 (353)
                                                    .....+.+++|+|++....     .+...+|+++|||||++||+|+||++
T Consensus        57 ------------------------------~~~~~~~~~~v~e~~e~~~-----~~~~~~p~iaviTNI~~dHLd~~~~~  101 (207)
T d1j6ua3          57 ------------------------------GNYEKGNGPVVYELDESEE-----FFSEFSPNYLIITNARGDHLENYGNS  101 (207)
T ss_dssp             ------------------------------SSEECCSSCEEEEECTTSG-----GGGGCCCSEEEECCCCCCCGGGGTTC
T ss_pred             ------------------------------hhccCCCcceeEEeeechh-----hhhhhhhceeeeeechhhhhhccCcc
Confidence                                          0235678899999976543     23445689999999999999999988


Q ss_pred             HHHHHHHHHhcccCCCc-eeecCchhHHHHHHHhHHhcCCCCcccceEEEee--c--c--eeee---eeeeeeeeCCCch
Q 018577          237 LETIAMAKSGIIKYGRP-VVSAYDAGIRATINGLSMFNDRPCQSCDIIVQAE--R--D--LKLS---IELLDVKLCMIGN  306 (353)
Q Consensus       237 le~ia~~Ka~Iik~g~~-vv~~dd~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~--~--~~~~---~~~~~~~l~l~G~  306 (353)
                      ++.|+++|..+++.+.. |+|.||+....+ ..  ..++...  .++.+...  .  .  +...   ....+++++++|.
T Consensus       102 ~~~~~~~k~~~~~~~~~~i~n~dd~~~~~~-~~--~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~  176 (207)
T d1j6ua3         102 LTRYRSAFEKISRNTDLVVTFAEDELTSHL-GD--VTFGVKK--GTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGF  176 (207)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEETTCTTTGGG-CS--EEECSSS--SSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSH
T ss_pred             ccccccccchhhhhcccccccccccccccc-cc--ccccccc--ccccccccccccccccccccccCcEEEEEEeCCCcH
Confidence            99999999999987654 667777653221 11  1122211  12221111  0  0  1111   1234688999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCC
Q 018577          307 HQLHNALTATCAALCLRDQGGYLMLSYFLSGFREEH  342 (353)
Q Consensus       307 hq~~Na~~Alaaa~~l~~~~~gi~~~~I~~gL~~~~  342 (353)
                      ||++|+++|+++|..+     |++.+.|.++|++|+
T Consensus       177 hn~~NalaAiava~~l-----gi~~~~i~~~L~~FK  207 (207)
T d1j6ua3         177 HNVLNALAVIALFDSL-----GYDLAPVLEALEEFR  207 (207)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHc-----CCCHHHHHHHHHhcC
Confidence            9999999999999999     999999999999883

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00052  Score=63.07  Aligned_cols=48  Identities=21%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             HHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           79 RMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        79 r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ..+++|+.+-....+..+|+|||.  .||||...-|...+...|+++++.
T Consensus        39 ~~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavl   88 (327)
T d2p67a1          39 LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI   88 (327)
T ss_dssp             HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeee
Confidence            356677766433456889999999  899999999999999999999875

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.50  E-value=0.02  Score=51.98  Aligned_cols=49  Identities=29%  Similarity=0.361  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           78 GRMNRLMDRLGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        78 ~r~~~~l~~lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +..+.+++.+-....+..+|+|||+  .||||+..-|...+...|+++++.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaVi   85 (323)
T d2qm8a1          35 AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL   85 (323)
T ss_dssp             HHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeee
Confidence            4456666666444456789999997  789999999888888899999886

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.003  Score=52.80  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=28.5

Q ss_pred             cEEEEcCCC---CchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGTK---GKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGTn---GKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      |.+-||||+   ||||++.-|+..|.+.|++|.++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i   36 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            456778876   99999999999999999999886

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.061  Score=46.53  Aligned_cols=48  Identities=21%  Similarity=0.176  Sum_probs=38.8

Q ss_pred             CCChHHHHHHHHHcCCCCCCCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           74 GFDLGRMNRLMDRLGNPHSKFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        74 ~~~l~r~~~~l~~lg~p~~~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      -++|.+|..-+++=|     .++|.++|  --|||||+..|+..|.+.|++|.+.
T Consensus         5 ~~~~~~~~~~~~~~~-----~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllv   54 (279)
T d1ihua2           5 IPSLSALVDDIARNE-----HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT   54 (279)
T ss_dssp             CCCHHHHHHHHHTTS-----CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CccHHHHHHHhhcCC-----CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            467888888777533     37777765  5689999999999999999999874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.19  E-value=0.032  Score=49.68  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             CCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           92 SKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        92 ~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.|+|+|||.  .||||++..|.++|...|.++.+.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI   38 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI   38 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEE
Confidence            46689999997  689999999999999999887554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.05  Score=42.83  Aligned_cols=33  Identities=24%  Similarity=0.197  Sum_probs=29.7

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +|+|+|||.  .||||.+.-|..-|...|++++..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~   36 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   36 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence            489999997  689999999999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.92  E-value=0.81  Score=38.32  Aligned_cols=42  Identities=24%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             cCCCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           87 LGNPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        87 lg~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      |..|..+..+|...|-  .|||||.+=|++-+...|.+|++.+.
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~   47 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA   47 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence            3445555667766665  58999999999999999999998653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.88  E-value=0.19  Score=42.39  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             CCCCCCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           89 NPHSKFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        89 ~p~~~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      .|.+...+|...|-  .|||||.+=|++-++..|.+|++.+.
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   48 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGA   48 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence            45566677777775  58999999999999999999998653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.76  E-value=0.081  Score=42.58  Aligned_cols=52  Identities=27%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             HHHHHHHHHcCCCCCC-CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577           78 GRMNRLMDRLGNPHSK-FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (353)
Q Consensus        78 ~r~~~~l~~lg~p~~~-~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp  129 (353)
                      +++..+++..-+.+.+ .-+|+|+|-  .||||++..|...|...|..+.....+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~   59 (198)
T d1rz3a_           5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (198)
T ss_dssp             HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             HHHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccc
Confidence            3555555554333333 347999995  799999999999999999888765443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.62  E-value=0.059  Score=42.98  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=29.6

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +++|+|+|.  .||||+..-|..-|+..|++|+..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi   35 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV   35 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            478999997  689999999999999999999985

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.03  E-value=0.065  Score=46.85  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=28.8

Q ss_pred             CcEEEEc--CCCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           94 FKTVHIA--GTKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        94 ~~vI~Vt--GTnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      .+.|+|.  |--|||||+.-|+..|.+.|++|.+.
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlI   36 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV   36 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            4677786  78899999999999999999999764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.85  E-value=0.78  Score=38.21  Aligned_cols=34  Identities=24%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEec
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      .++|.+.|-  .|||||++-|++.+...|++|++.+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit   45 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA   45 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            456666665  5899999999999999999998754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.45  E-value=0.11  Score=44.64  Aligned_cols=32  Identities=34%  Similarity=0.363  Sum_probs=27.8

Q ss_pred             cEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +.|+|+|  --||||++.-|+..|.+.|++|.+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllI   35 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV   35 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            5677775  5689999999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.17  E-value=0.13  Score=40.71  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=28.1

Q ss_pred             cEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|.|+|.  .||||++..|+.-|...|+++..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   35 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV   35 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            68999997  789999999999999999887653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=89.30  E-value=0.11  Score=41.25  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEE
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGC  125 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~  125 (353)
                      +++|.|+|.  .||||++..|+..|...|+++-.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~   34 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKI   34 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            478889997  78999999999999999988744

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.27  E-value=0.14  Score=42.62  Aligned_cols=33  Identities=27%  Similarity=0.310  Sum_probs=28.9

Q ss_pred             CcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           94 FKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        94 ~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      +|+|+|++.   -||||++.-|+..|...|++|.+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~Vlli   36 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIV   36 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence            478888854   899999999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=88.65  E-value=0.24  Score=44.14  Aligned_cols=44  Identities=30%  Similarity=0.313  Sum_probs=32.7

Q ss_pred             HcCCCCCC-CcEEEEcCC--CCchHHHHHHHHHHHHc--CCCeEEecCC
Q 018577           86 RLGNPHSK-FKTVHIAGT--KGKGSTAAFLSSILRAE--GYSVGCYTSP  129 (353)
Q Consensus        86 ~lg~p~~~-~~vI~VtGT--nGKtSTt~ml~~IL~~~--G~~vg~~tSp  129 (353)
                      .||....+ .-+|+|+|.  .||||++..|..+|+..  |.+|.+.+.-
T Consensus        71 fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          71 FLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             HHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             HhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            35665444 458999996  79999999999999854  6777765443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.03  E-value=0.26  Score=40.75  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=28.2

Q ss_pred             cEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEe
Q 018577           95 KTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCY  126 (353)
Q Consensus        95 ~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~  126 (353)
                      ++|+|+|.   -||||++.-|+..|...|++|.+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vlli   37 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            57888755   789999999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=85.91  E-value=0.43  Score=39.93  Aligned_cols=36  Identities=28%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             CCcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           93 KFKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        93 ~~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      +.++|.+.|-  .|||||++=|++.+...|.+|++.+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~   42 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG   42 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence            4467777775  58999999999999999999998543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.71  E-value=0.5  Score=38.29  Aligned_cols=34  Identities=35%  Similarity=0.469  Sum_probs=29.2

Q ss_pred             EEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecCC
Q 018577           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTSP  129 (353)
Q Consensus        96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tSp  129 (353)
                      +|.|.|.  .||||.+..|..-|.+.|++|-...-|
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            4788886  799999999999999999998765545

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=0.3  Score=41.94  Aligned_cols=35  Identities=20%  Similarity=0.109  Sum_probs=29.7

Q ss_pred             CCcEEEEcC--CCCchHHHHHHHHHHHHcCCCeEEec
Q 018577           93 KFKTVHIAG--TKGKGSTAAFLSSILRAEGYSVGCYT  127 (353)
Q Consensus        93 ~~~vI~VtG--TnGKtSTt~ml~~IL~~~G~~vg~~t  127 (353)
                      ..++|-++|  --||||++..++..|.+.|+||.+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            356777876  57899999999999999999998753

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.49  Score=41.02  Aligned_cols=37  Identities=30%  Similarity=0.468  Sum_probs=31.0

Q ss_pred             CcEEEEcC----CCCchHHHHHHHHHHHHcCCCeEEe-cCCc
Q 018577           94 FKTVHIAG----TKGKGSTAAFLSSILRAEGYSVGCY-TSPH  130 (353)
Q Consensus        94 ~~vI~VtG----TnGKtSTt~ml~~IL~~~G~~vg~~-tSp~  130 (353)
                      +|.|-|||    +=|||-|++-|..+|+..|++|... .-|+
T Consensus         1 mKyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY   42 (273)
T d2vo1a1           1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY   42 (273)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred             CeEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccc
Confidence            36788999    6899999999999999999999663 3444

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=82.43  E-value=0.87  Score=38.09  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             CcEEEEcCC--CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           94 FKTVHIAGT--KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        94 ~~vI~VtGT--nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      ..+|.+.|-  .|||||.+=|++-++..|.+|++.+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~   45 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG   45 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence            456666665  48999999999999999999998653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=81.78  E-value=0.46  Score=39.21  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=19.9

Q ss_pred             EEEEcCC--CCchHHHHHHHHHHHHcCCCe
Q 018577           96 TVHIAGT--KGKGSTAAFLSSILRAEGYSV  123 (353)
Q Consensus        96 vI~VtGT--nGKtSTt~ml~~IL~~~G~~v  123 (353)
                      +|+|||.  .||||++.+    |++.|+.+
T Consensus         5 iIgitG~igSGKStv~~~----l~~~G~~v   30 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANA----FADLGINV   30 (208)
T ss_dssp             EEEEECCTTSCHHHHHHH----HHHTTCEE
T ss_pred             EEEEECCCcCCHHHHHHH----HHHCCCcE
Confidence            8999997  789998875    57789875

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=81.30  E-value=2.4  Score=37.79  Aligned_cols=37  Identities=32%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCC---CCchHHHHHHHHHHHHcCCCeEEecC
Q 018577           92 SKFKTVHIAGT---KGKGSTAAFLSSILRAEGYSVGCYTS  128 (353)
Q Consensus        92 ~~~~vI~VtGT---nGKtSTt~ml~~IL~~~G~~vg~~tS  128 (353)
                      .+.+.|.|-||   -||=||+-.|...|++.|+++++..+
T Consensus       155 ~~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~a~fiaT  194 (338)
T d2g0ta1         155 KKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLAT  194 (338)
T ss_dssp             CCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cCCcEEEEeccCccccHHHHHHHHHHHHHhCCCCeeEEEc
Confidence            35688999998   79999999999999999999987544