Citrus Sinensis ID: 018591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSIISC
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEcccccEEEEEEEEcEEEEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEEEccccccEEEEEccccEEEEccccEEEEEEEccEEEEEEEcccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccEEEEEcccccEEEEEccccccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEcccccccEEEEEEEcccEEEEEcccccEEEEEcccccEEEEEEEcccccccEEEEEEEccccccccEEEEEcccccEEEEEcccccEEEccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEcccccEEEEEEccccccccccHEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEEccccccEEEEcccccEEEEcccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccccccEEEEEccccEEEEEEcccccEEEEccccccccc
Coil and Loop (DISEMBL)
mpckshrsLAVLSGHVGSVSSLALCGEFILsasqgkdiivwqqpdlrmftkfghgdgsVKAVVTVGNKVftahqdsrirVWKVSRSSENVFRLVDTLPttkdylgkfmkqsnyvqtrRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKelgkshchSLKGIleghkdvslnsvvvsddgkwvygggsdgfvmgWEGNVEIVRWKLACETKAHEMAVLCVCLVGeflcsgsadksiGIWKREAFGKLCRvgaitghegpvkclqaspnavggGFLLYSGSLDKSLRVWWVSkqsstsdseeksiisc
Flexible Loop (DISEMBL)
MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKvftahqdsrirvwkvsrssenvfrlvdtlpttkdylgkfmkqsnyvqtrRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVskqsstsdseeksiisc
Low Complexity Region (SEG)
MPCKSHRslavlsghvgsvsslalCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKdvslnsvvvsddGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSIISC
Disordered region (IsUnstruct)
*********AVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV*****************
Disordered Region (DISOPRED)
MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK*************SC
Disordered Region (DISEMBL)
MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV*****************
Disordered Region (DISPRO)
****SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKS***C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSIISC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
P90648	732	Myosin heavy chain kinase	yes	no	0.515	0.248	0.297	3e-16
Q8YV57	1683	Uncharacterized WD repeat	yes	no	0.787	0.165	0.287	7e-16
Q8MY12	780	Myosin heavy chain kinase	no	no	0.509	0.230	0.297	5e-15
Q09990	665	F-box/WD repeat-containin	yes	no	0.535	0.284	0.282	4e-13
Q54KL5	335	WD repeat-containing prot	no	no	0.781	0.823	0.273	2e-12
Q91854	518	Beta-TrCP OS=Xenopus laev	N/A	no	0.552	0.376	0.279	2e-12
Q9Y297	605	F-box/WD repeat-containin	no	no	0.552	0.322	0.279	4e-12
P42527	1146	Myosin heavy chain kinase	no	no	0.532	0.164	0.285	5e-12
Q3ULA2	605	F-box/WD repeat-containin	no	no	0.552	0.322	0.279	6e-12
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.575	0.308	0.262	2e-11

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 23/205 (11%)

Query: 132 SCLTVYNGLIYSGSWDKTLKVW--RVADLKCLESIKAHDDAVNGLVASKGIVYSASADGK 189
           S L + + L+++G  D +++V+  +  +++C++++K H+  V  +  +   ++S S+D  
Sbjct: 464 SHLCICDNLLFTGCSDNSIRVYDYKSQNMECVQTLKGHEGPVESICYNDQYLFSGSSDHS 523

Query: 190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR 249
           IK W  +L K  C      LEGH D  +++V+++D  K+++ G SD  +  W+      +
Sbjct: 524 IKVW--DLKKLRC---IFTLEGH-DKPVHTVLLND--KYLFSGSSDKTIKVWDLKTLECK 575

Query: 250 WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL 309
           + L    ++H  AV  +C+ G++L SGS DK+I +W  + F   C    + GH   V  +
Sbjct: 576 YTL----ESHARAVKTLCISGQYLFSGSNDKTIKVWDLKTFR--CNY-TLKGHTKWVTTI 628

Query: 310 QASPNAVGGGFLLYSGSLDKSLRVW 334
                    G  LYSGS DK++RVW
Sbjct: 629 CIL------GTNLYSGSYDKTIRVW 647

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 7

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 97/337 (28%), Positives = 139/337 (41%), Gaps = 59/337 (17%)

Query: 9    LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV- 65
            L   +GH G V ++        I SAS    I +WQ+P +        G+  V AV  + 
Sbjct: 1315 LETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLEVLA-GNSGVYAVSFLH 1373

Query: 66   -GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG-KFMKQSNYVQTRRHHKRL 123
             G+ + TA  D  I++W     S     L+ TLP  K   G  F  Q +           
Sbjct: 1374 DGSIIATAGADGNIQLWHSQDGS-----LLKTLPGNKAIYGISFTPQGD----------- 1417

Query: 124  WIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IV 181
                            LI S + DKT+K+WRV D K L+++  HD+ VN +  S     +
Sbjct: 1418 ----------------LIASANADKTVKIWRVRDGKALKTLIGHDNEVNKVNFSPDGKTL 1461

Query: 182  YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW 241
             SAS D  +K W    GK      K  L+GH D  +  V  S DGK +    +D  +  W
Sbjct: 1462 ASASRDNTVKLWNVSDGK-----FKKTLKGHTD-EVFWVSFSPDGKIIASASADKTIRLW 1515

Query: 242  EGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
            +         L     AH   V  V     G  L S SADK++ +W R   G L  +   
Sbjct: 1516 DS----FSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLW-RSHDGHL--LHTF 1568

Query: 300  TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336
            +GH   V     SP+    G  + S S DK++++W +
Sbjct: 1569 SGHSNVVYSSSFSPD----GRYIASASEDKTVKIWQI 1601

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8MY12|MHCKC_DICDI Myosin heavy chain kinase C OS=Dictyostelium discoideum GN=mhkC PE=1 SV=1

 Score = 82.4 bits (202), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 25/205 (12%)

Query: 133 CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI---VYSASADGK 189
           C+T  +  +YSGS D  + VW   +LK + +IKAH  ++  ++   G    + +A AD  
Sbjct: 516 CITGDSLRLYSGSNDGQIGVWDAVELKHVTNIKAHGKSIRAVIKRPGFDQNILTAGADSL 575

Query: 190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR 249
           +K W         ++ + I E  +   +N++ + D+   +Y G +D  V  W    ++  
Sbjct: 576 VKEWD-------INTQQTIKEIKESNEVNTIFIQDN--LLYTGCNDKTVKVW----DMRS 622

Query: 250 WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL 309
           ++       H  A+  VC +G  L SGS D+ I +W   A G +  +    GHEG VK L
Sbjct: 623 YECVKTLSGHTRAIKSVCAMGNLLFSGSNDQQIYVWNL-ATGTI--LTNFQGHEGWVKTL 679

Query: 310 QASPNAVGGGFLLYSGSLDKSLRVW 334
            A  N      +LYSGS D+++R+W
Sbjct: 680 YAHNN------MLYSGSHDETIRIW 698

Phosphorylates threonine at 'Thr-1823', 'Thr-1833' and 'Thr-2029' in the C-terminal tail region of myosin II heavy chain (mhcA) (By similarity). This phosphorylation is critical in actin-activated ATPase activity of the myosin and regulating the assembly and disassembly of myosin II filament. In vitro, catalytic domain phosphorylates mhcA, myelin basic protein, myosin regulatory light chain, casein and caldesmon. Drives the disassembly of myosin II filaments for efficient cytokinesis and recycling of myosin II that occurs during late cytokinesis. Can be activated in vitro by autophosphorylation.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 20/209 (9%)

Query: 127 HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASA 186
           H  S+ CL   N +I SGS D T++VW V   +C++++  H +AV  L  + GI+ + S 
Sbjct: 261 HTGSVLCLQYDNRVIISGSSDATVRVWDVETGECIKTLIHHCEAVLHLRFANGIMVTCSK 320

Query: 187 DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN-V 245
           D  I  W  ++      +++ +L GH+  ++N  VV  D +++     D  +  W  + +
Sbjct: 321 DRSIAVW--DMVSPRDITIRRVLVGHR-AAVN--VVDFDDRYIVSASGDRTIKVWSMDTL 375

Query: 246 EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP 305
           E VR  LA     H   + C+   G  + SGS+D +I +W  +    +C +  + GHE  
Sbjct: 376 EFVR-TLA----GHRRGIACLQYRGRLVVSGSSDNTIRLW--DIHSGVC-LRVLEGHEEL 427

Query: 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
           V+C++     +       SG+ D  ++VW
Sbjct: 428 VRCIRFDEKRI------VSGAYDGKIKVW 450

Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 146/340 (42%), Gaps = 64/340 (18%)

Query: 11  VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRM-FTKFGHGDGSVKAVVTVGN 67
            L GH+ S+SS+     G+++ SAS  K I +W   D +   T  GH +G      +  +
Sbjct: 41  TLKGHLKSISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDS 100

Query: 68  KVF-TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLW 124
           K+  +A  D  I++W V        ++V TL   K+Y+    F  QSN            
Sbjct: 101 KLICSASDDKTIKIWDVESG-----KMVKTLKGHKEYVFGVSFNPQSN------------ 143

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY 182
                          LI SGS+D+ +++W V   +C + I AH D V G+  ++   +V 
Sbjct: 144 ---------------LIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVV 188

Query: 183 SASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW 241
           S S DG ++ W    G+     L  I  E  K+VS   V  S +GK+V  G  D  +  W
Sbjct: 189 SGSYDGTVRIWDTTTGQ----LLNTISTEDGKEVSF--VKFSPNGKFVLAGTLDNTLRLW 242

Query: 242 EGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWK---REAFGKLCRV 296
             N      K     K  +  +     V  G+++ +GS D  I I+    RE       V
Sbjct: 243 SYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIYNLQTREI------V 296

Query: 297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSL--DKSLRVW 334
             + GHE  V  +   P       ++ SG+L  D+S+++W
Sbjct: 297 QTLAGHEDVVLTVACHPTEN----IIASGALEKDRSVKIW 332

Dictyostelium discoideum (taxid: 44689)

>sp|Q91854|TRCB_XENLA Beta-TrCP OS=Xenopus laevis GN=fbxw1 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 20/215 (9%)

Query: 121 KRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI 180
           KR+ + H  S+ CL     +I +GS D T++VW V   + L ++  H +AV  L  + G+
Sbjct: 265 KRVLMGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 324

Query: 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240
           + + S D  I  W  ++  +   +L+ +L GH+  ++N  VV  D K++     D  +  
Sbjct: 325 MVTCSKDRSIAVW--DMASATDITLRRVLVGHR-AAVN--VVDFDDKYIVSASGDRTIKV 379

Query: 241 WEGNV-EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
           W  +  E VR         H+  + C+      + SGS+D +I +W  E  G   RV  +
Sbjct: 380 WNTSTCEFVR-----TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACLRV--L 431

Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
            GHE  V+C++     +       SG+ D  ++VW
Sbjct: 432 EGHEELVRCIRFDNKRI------VSGAYDGKIKVW 460

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. May participate in Wnt signaling.

Xenopus laevis (taxid: 8355)

>sp|Q9Y297|FBW1A_HUMAN F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 20/215 (9%)

Query: 121 KRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI 180
           KR+   H  S+ CL     +I +GS D T++VW V   + L ++  H +AV  L  + G+
Sbjct: 336 KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 395

Query: 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240
           + + S D  I  W  ++      +L+ +L GH+  ++N  VV  D K++     D  +  
Sbjct: 396 MVTCSKDRSIAVW--DMASPTDITLRRVLVGHR-AAVN--VVDFDDKYIVSASGDRTIKV 450

Query: 241 WEGNV-EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
           W  +  E VR         H+  + C+      + SGS+D +I +W  E  G   RV  +
Sbjct: 451 WNTSTCEFVR-----TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACLRV--L 502

Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
            GHE  V+C++     +       SG+ D  ++VW
Sbjct: 503 EGHEELVRCIRFDNKRI------VSGAYDGKIKVW 531

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3.

Homo sapiens (taxid: 9606)

>sp|P42527|MHCKA_DICDI Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA PE=1 SV=2

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 22/210 (10%)

Query: 127  HADSISCLTVYNGLIYSGSWDKTLKVW--RVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
            H  SI  +   +  I++ S D T+KV   R  + KC+E++  H   VN +VA++  ++S 
Sbjct: 911  HRKSIESIACNSNYIFTSSPDNTIKVHIIRSGNTKCIETLVGHTGEVNCVVANEKYLFSC 970

Query: 185  SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244
            S D  IK W     K     +K   EG     + ++ +S  G++++ GG+D  +  W+  
Sbjct: 971  SYDKTIKVWDLSTFKE----IKS-FEGVHTKYIKTLALS--GRYLFSGGNDQIIYVWDTE 1023

Query: 245  VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304
               + + +    + HE  VL +     +L S S D  I IW    F   C +  + GH  
Sbjct: 1024 TLSMLFNM----QGHEDWVLSLHCTASYLFSTSKDNVIKIWDLSNFS--C-IDTLKGHWN 1076

Query: 305  PVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
             V       + V     LYSGS D S++VW
Sbjct: 1077 SVS------SCVVKDRYLYSGSEDNSIKVW 1100

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Requires autophosphorylation for activity.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|Q3ULA2|FBW1A_MOUSE F-box/WD repeat-containing protein 1A OS=Mus musculus GN=Btrc PE=1 SV=2

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 20/215 (9%)

Query: 121 KRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI 180
           KR+   H  S+ CL     +I +GS D T++VW V   + L ++  H +AV  L  + G+
Sbjct: 336 KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRFNNGM 395

Query: 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240
           + + S D  I  W  ++      +L+ +L GH+  ++N  VV  D K++     D  +  
Sbjct: 396 MVTCSKDRSIAVW--DMASPTDITLRRVLVGHR-AAVN--VVDFDDKYIVSASGDRTIKV 450

Query: 241 WEGNV-EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
           W  +  E VR         H+  + C+      + SGS+D +I +W  E  G   RV  +
Sbjct: 451 WNTSTCEFVR-----TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACLRV--L 502

Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
            GHE  V+C++     +       SG+ D  ++VW
Sbjct: 503 EGHEELVRCIRFDNKRI------VSGAYDGKIKVW 531

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3.

Mus musculus (taxid: 10090)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 33/236 (13%)

Query: 125 IEHADSISCLTVYNG---LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNG--LVASKG 179
           + HA ++S L +      L+ +G  D  + +W +    C+ S+  H   V    L   + 
Sbjct: 17  VAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEE 76

Query: 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239
           ++ + S  G I+ W  E  K     +   L GHK  ++ S+     G++V  G  D  + 
Sbjct: 77  LIVAGSQSGSIRVWDLEAAK-----ILRTLMGHK-ANICSLDFHPYGEFVASGSQDTNIK 130

Query: 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVG 297
            W+    I R       + H  AV C+     G++L S + D ++ +W   A GK+  + 
Sbjct: 131 LWD----IRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTA-GKM--MS 183

Query: 298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSIISC 353
              GH GPV  ++  PN     +LL SGS D+++R W         D E+  ++SC
Sbjct: 184 EFPGHTGPVNVVEFHPNE----YLLASGSSDRTIRFW---------DLEKFQVVSC 226

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
224075806	389	predicted protein [Populus trichocarpa]	0.983	0.892	0.865	1e-173
224053338	391	predicted protein [Populus trichocarpa]	0.983	0.887	0.859	1e-172
356529844	403	PREDICTED: myosin heavy chain kinase B-l	0.966	0.846	0.840	1e-166
225449915	397	PREDICTED: myosin heavy chain kinase B [	0.977	0.869	0.821	1e-163
357450919	413	F-box/WD repeat-containing protein 1A [M	0.974	0.832	0.820	1e-162
147778385	399	hypothetical protein VITISV_021843 [Viti	0.977	0.864	0.815	1e-161
449445166	423	PREDICTED: uncharacterized WD repeat-con	0.946	0.789	0.811	1e-159
255544099	332	F-box and wd40 domain protein, putative	0.878	0.933	0.783	1e-146
15231088	415	transducin/WD40 domain-containing protei	0.963	0.819	0.736	1e-143
297816456	413	hypothetical protein ARALYDRAFT_485550 [	0.968	0.828	0.733	1e-141

>gi|224075806|ref|XP_002304776.1| predicted protein [Populus trichocarpa] gi|222842208|gb|EEE79755.1| predicted protein [Populus trichocarpa]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/349 (86%), Positives = 322/349 (92%), Gaps = 2/349 (0%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           S+R LAVLSGHVGSVS LALCGEFILSASQGKDIIVWQQPDLRMFTKFG GDGSVKA+VT
Sbjct: 42  SYRPLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRMFTKFGQGDGSVKALVT 101

Query: 65  VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
           VG+KVFTAHQDSRIRVWKVSR SENVFRLVDT+PTTKDYLGKFMKQSNYVQTRRHHK+LW
Sbjct: 102 VGSKVFTAHQDSRIRVWKVSRRSENVFRLVDTMPTTKDYLGKFMKQSNYVQTRRHHKKLW 161

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
           IEHADSISCLTVYNGLIYSGSWDKTLKVWR++DLKCLESIKAHDDA+NGLVA KGIVYSA
Sbjct: 162 IEHADSISCLTVYNGLIYSGSWDKTLKVWRISDLKCLESIKAHDDAINGLVACKGIVYSA 221

Query: 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244
           SADGKIKAWGKE GKS  HSLKGILEGHKDVSLNSV+VSDDGKWVYGG SDGFVMGWEG+
Sbjct: 222 SADGKIKAWGKE-GKS-SHSLKGILEGHKDVSLNSVIVSDDGKWVYGGASDGFVMGWEGS 279

Query: 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304
            + + WKL  ETKAH+MAVLC+CL+GEFL SGSADKSI IWKREAFGKL ++G I GHEG
Sbjct: 280 YDFLSWKLVSETKAHQMAVLCMCLMGEFLFSGSADKSISIWKREAFGKLSKIGVINGHEG 339

Query: 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSIISC 353
           PVKCLQASPN VG GFLLYSG LDKSLRVWWV KQS+  ++EEKSI  C
Sbjct: 340 PVKCLQASPNNVGSGFLLYSGGLDKSLRVWWVPKQSTAQNTEEKSISLC 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053338|ref|XP_002297770.1| predicted protein [Populus trichocarpa] gi|222845028|gb|EEE82575.1| predicted protein [Populus trichocarpa]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 300/349 (85%), Positives = 320/349 (91%), Gaps = 2/349 (0%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           S+R LAVLS HVG VS LALCGEFILSASQGKDIIVWQQPDLR+FTKFG GDGSVKA+V+
Sbjct: 45  SYRPLAVLSDHVGPVSCLALCGEFILSASQGKDIIVWQQPDLRLFTKFGQGDGSVKALVS 104

Query: 65  VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
           VGNKVFTAHQDSRIRVWKVSR SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK+LW
Sbjct: 105 VGNKVFTAHQDSRIRVWKVSRRSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKKLW 164

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
           IEHADSISCL VYNGL+YSGSWDKTLKVWR++DLKCLESIKAHDDA+NGLVA KGIVYSA
Sbjct: 165 IEHADSISCLAVYNGLVYSGSWDKTLKVWRISDLKCLESIKAHDDAINGLVACKGIVYSA 224

Query: 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244
           SADGKIKAWGKE GKS  HSLKGILEGHKDVSLNSV+VSDDGKWVYGGGSDGFVMGWEG+
Sbjct: 225 SADGKIKAWGKE-GKS-SHSLKGILEGHKDVSLNSVIVSDDGKWVYGGGSDGFVMGWEGS 282

Query: 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304
            + V WK+  ETKAH+MAVLC+CL GEFL SGSADK+IGIWKREAFGKL +VG I GHEG
Sbjct: 283 YDFVSWKMVSETKAHQMAVLCICLAGEFLFSGSADKNIGIWKREAFGKLSKVGVINGHEG 342

Query: 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSIISC 353
           PVKCLQASPN VGGGFLLYSG LDKSLRVWWV K S+  ++EEKSI  C
Sbjct: 343 PVKCLQASPNIVGGGFLLYSGGLDKSLRVWWVPKHSTLQNTEEKSISLC 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529844|ref|XP_003533497.1| PREDICTED: myosin heavy chain kinase B-like [Glycine max]

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/345 (84%), Positives = 318/345 (92%), Gaps = 4/345 (1%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           SHRSL+VLSGHVGSVS LALCGEFILSASQGKDIIVWQQPDLR+F KFG GDGSVKA+ T
Sbjct: 54  SHRSLSVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFAKFGQGDGSVKALAT 113

Query: 65  VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
           VGNKVFTAHQDSRIRVWKVSRSSENVF+LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW
Sbjct: 114 VGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 173

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
           IEHADSISCLTVYNG IYSGSWDKTLKVWR++DLKCLESIKAHDDA+NGLVA KG++YSA
Sbjct: 174 IEHADSISCLTVYNGFIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVACKGVMYSA 233

Query: 185 SADGKIKAWG-KELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG 243
           SADGKIKAWG K+ GK   H LKG+LEGHKDVS N+VVVS+DGKWVYGGGSDGFVMGWEG
Sbjct: 234 SADGKIKAWGRKKDGKGEEHGLKGVLEGHKDVSFNAVVVSEDGKWVYGGGSDGFVMGWEG 293

Query: 244 NVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
            +E   WKL  ETKAHEMAVLC+CL+GE LCSGSADK+IGIW+RE FGKLC+VG I+GHE
Sbjct: 294 -LESCCWKLVSETKAHEMAVLCMCLMGEILCSGSADKTIGIWRRETFGKLCKVGVISGHE 352

Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK 348
           GPVKCLQASPN +GGGFLLYSGSLD+S+RVWWV + +  +D+EE+
Sbjct: 353 GPVKCLQASPNRIGGGFLLYSGSLDRSVRVWWVPRYN--NDAEEQ 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449915|ref|XP_002268927.1| PREDICTED: myosin heavy chain kinase B [Vitis vinifera] gi|296081304|emb|CBI17748.3| unnamed protein product [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/347 (82%), Positives = 316/347 (91%), Gaps = 2/347 (0%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           S++SLAVLSGHVGSVS LALCGEFILSASQGKDIIVWQQPDLR FTKFG G+GSVKA+VT
Sbjct: 51  SYKSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRQFTKFGQGEGSVKALVT 110

Query: 65  VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
           VG+KVFTAHQDSRIRVWKVSR SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW
Sbjct: 111 VGHKVFTAHQDSRIRVWKVSRRSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 170

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
           IEHADSISCLT+ NGLIYSGSWDKTLKVWR+ADLKCLESIKAHDDA+NGLV+ KG+VYSA
Sbjct: 171 IEHADSISCLTICNGLIYSGSWDKTLKVWRIADLKCLESIKAHDDAINGLVSCKGLVYSA 230

Query: 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244
           SADGKIKAWGKE   S  HSLKGILEG+KDVSLNSVVVS+DG+ VYGGGSDG+VM WEG+
Sbjct: 231 SADGKIKAWGKEGDNS--HSLKGILEGNKDVSLNSVVVSEDGRVVYGGGSDGYVMEWEGS 288

Query: 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304
           +++  WKL C+ KAHEMAVLC+CL+ EFLC+GSADKSIGIW+R+A G LCRVG + GHEG
Sbjct: 289 LKLDSWKLVCKAKAHEMAVLCMCLMEEFLCTGSADKSIGIWRRDADGGLCRVGIVRGHEG 348

Query: 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSII 351
           PVKCLQASP+ VGGGFLLYSGSLD+SLRVWWV K S+ ++ +    I
Sbjct: 349 PVKCLQASPHCVGGGFLLYSGSLDRSLRVWWVPKDSAKTEEKNHPTI 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450919|ref|XP_003595736.1| F-box/WD repeat-containing protein 1A [Medicago truncatula] gi|355484784|gb|AES65987.1| F-box/WD repeat-containing protein 1A [Medicago truncatula]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/351 (82%), Positives = 313/351 (89%), Gaps = 7/351 (1%)

Query: 2   PCKS--HRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSV 59
           PCKS  HRSLA+LS HVGSVS LALCGEFILSASQGKDIIVWQQPDLR+F KFG GDGSV
Sbjct: 48  PCKSVSHRSLAILSEHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSV 107

Query: 60  KAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRH 119
           KA+ T GN VFTAHQDS+IRVWKVSRSSENVF+LVDTLPTTKDYLGKFMKQSNYVQTRRH
Sbjct: 108 KALATFGNNVFTAHQDSKIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRH 167

Query: 120 HKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG 179
           HKRLWIEHADSISCL V+NGLIYSGSWDKTLKVW V+DLKCLESIKAHDDA+NGLVA KG
Sbjct: 168 HKRLWIEHADSISCLVVHNGLIYSGSWDKTLKVWSVSDLKCLESIKAHDDAINGLVACKG 227

Query: 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239
           IVYSASADGKIKAWGKE GK + H+LKG+LEGH+DVS NSVVVSDDGKWVYGGGSDG+VM
Sbjct: 228 IVYSASADGKIKAWGKE-GK-NLHTLKGVLEGHRDVSFNSVVVSDDGKWVYGGGSDGYVM 285

Query: 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
            +E N E   WK+ CETKAHEMAVLC+CL+  FLC+GSADKSIGIWKREAFGK+C+VG I
Sbjct: 286 CYERNFE--NWKMVCETKAHEMAVLCMCLIEGFLCTGSADKSIGIWKREAFGKICKVGVI 343

Query: 300 TGHEGPVKCLQA-SPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKS 349
            GHEGPVKCLQA S N +GGGFLLYSGSLD+S+RVWWV K   T   ++ S
Sbjct: 344 IGHEGPVKCLQASSSNRIGGGFLLYSGSLDRSVRVWWVPKYDETKVEDKNS 394

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778385|emb|CAN67368.1| hypothetical protein VITISV_021843 [Vitis vinifera]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/347 (81%), Positives = 313/347 (90%), Gaps = 2/347 (0%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           S++SLAVLSGHVGSVS LALCGEFILSASQGKDIIVWQQPDLR FTKFG G+GSVKA+VT
Sbjct: 53  SYKSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRQFTKFGQGEGSVKALVT 112

Query: 65  VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
           VG+KVFTAHQDSRIRVWKVSR SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW
Sbjct: 113 VGHKVFTAHQDSRIRVWKVSRRSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 172

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
           IEHADSISCLT+ NGLIYSGSWDKTLKVWR+ADLKCLESIKAHDDA+NGLV+ KG+VYSA
Sbjct: 173 IEHADSISCLTICNGLIYSGSWDKTLKVWRIADLKCLESIKAHDDAINGLVSCKGLVYSA 232

Query: 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244
           SADGKIKAWGKE   S  HSLKGILEG+KDVSLNSVVVS+DG+ VYGGGSDG+VM WEG+
Sbjct: 233 SADGKIKAWGKEGDNS--HSLKGILEGNKDVSLNSVVVSEDGRVVYGGGSDGYVMEWEGS 290

Query: 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304
           +++  WKL C+ KAHEMAVLC+CL+ E LC+GSADKSIGIW+R A G LC VG + GHEG
Sbjct: 291 LKLDSWKLVCKXKAHEMAVLCMCLMEEXLCTGSADKSIGIWRRXADGGLCXVGIVRGHEG 350

Query: 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSII 351
           PVKCLQASP+ VGGGFLLYSGSLD+SLRVWWV K S+ ++ +    I
Sbjct: 351 PVKCLQASPHCVGGGFLLYSGSLDRSLRVWWVPKDSAKTEEKNHPTI 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445166|ref|XP_004140344.1| PREDICTED: uncharacterized WD repeat-containing protein all2124-like [Cucumis sativus]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/339 (81%), Positives = 303/339 (89%), Gaps = 5/339 (1%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           S+R LAVL GH+GSVSSLALCGEFILSASQGKDIIVWQQPDLR+FT+FGHG+GSVKAVV 
Sbjct: 56  SYRPLAVLPGHIGSVSSLALCGEFILSASQGKDIIVWQQPDLRVFTRFGHGEGSVKAVVA 115

Query: 65  VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
           VGN+VFTAHQD +IRVWKVSR SEN FRLV+TLPT KDYLGKFMKQSNYVQTRRHHK LW
Sbjct: 116 VGNRVFTAHQDGKIRVWKVSRRSENNFRLVNTLPTAKDYLGKFMKQSNYVQTRRHHKILW 175

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
           IEHAD+ISCL V+NGLIYSGSWDKTLKVWRV+DLKCLESIKAHDDA+NG+VA  GIVYSA
Sbjct: 176 IEHADTISCLAVHNGLIYSGSWDKTLKVWRVSDLKCLESIKAHDDAINGVVACNGIVYSA 235

Query: 185 SADGKIKAWGKE-----LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239
           SADGKIKAWG+        +   HSL GILEGHKDVS+NSVVVS+DGKWV+GG SDGF+M
Sbjct: 236 SADGKIKAWGRRKKEEEQVEEEMHSLLGILEGHKDVSINSVVVSNDGKWVFGGISDGFLM 295

Query: 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
           GWE   E + WK+ CE KAH+MAVLCVCL GEFLCSGSADKSIGIW+REAFG+LC++G I
Sbjct: 296 GWEKIGETMSWKVVCEKKAHKMAVLCVCLTGEFLCSGSADKSIGIWRREAFGRLCKIGVI 355

Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338
            GHEGP+KCLQA+PN VG GFLLYSGSLDKSLRVWWVSK
Sbjct: 356 NGHEGPIKCLQAAPNGVGEGFLLYSGSLDKSLRVWWVSK 394

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544099|ref|XP_002513112.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223548123|gb|EEF49615.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/337 (78%), Positives = 288/337 (85%), Gaps = 27/337 (8%)

Query: 10  AVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKV 69
           ++LS HVGSVS LALCGEFILSASQGKDIIVWQQPDLR+FTKFG GDGSVKA+VTVGNKV
Sbjct: 5   SLLSEHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFTKFGQGDGSVKALVTVGNKV 64

Query: 70  FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD 129
           FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ                   
Sbjct: 65  FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ------------------- 105

Query: 130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGK 189
                 +YNG +YSGSWDKTLKVWR++DLKCLESIKAHDDA+NGLVA KGIVYSASADGK
Sbjct: 106 ------IYNGFVYSGSWDKTLKVWRISDLKCLESIKAHDDAINGLVACKGIVYSASADGK 159

Query: 190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR 249
           IKAWGKE GK+  HSLKGILEGHKDVSLNSV VS+DGKWVYGGGSDGFVMGWEG+ + V 
Sbjct: 160 IKAWGKE-GKTS-HSLKGILEGHKDVSLNSVTVSEDGKWVYGGGSDGFVMGWEGSCDFVS 217

Query: 250 WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL 309
           WKL   TKAH+MAVLC+CL+GEFLCSGSADKSI IWKREA+GKLC+V  I+GHEGPVKCL
Sbjct: 218 WKLVSGTKAHQMAVLCMCLIGEFLCSGSADKSISIWKREAYGKLCKVWVISGHEGPVKCL 277

Query: 310 QASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346
           QASPN+VGGGFLLYSG LDKS+RVWWV K S+ +  +
Sbjct: 278 QASPNSVGGGFLLYSGGLDKSVRVWWVPKPSNKNTGQ 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231088|ref|NP_190761.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|4678922|emb|CAB41313.1| putative protein [Arabidopsis thaliana] gi|30725344|gb|AAP37694.1| At3g51930 [Arabidopsis thaliana] gi|110736561|dbj|BAF00246.1| hypothetical protein [Arabidopsis thaliana] gi|332645343|gb|AEE78864.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/357 (73%), Positives = 296/357 (82%), Gaps = 17/357 (4%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           +++ LAVLS HVGSVSSLALCGEF+LSASQGKDIIVWQQPDL++F KFG GDGSVKA+V+
Sbjct: 50  AYKPLAVLSAHVGSVSSLALCGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVS 109

Query: 65  VGNKVFTAHQDSRIRVWKVSR-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123
           VG+KVFTAHQDSRIRVWKVSR +SEN FRLVDTLPTTKDYLGKFMKQSNYVQTRR+HKRL
Sbjct: 110 VGSKVFTAHQDSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRL 169

Query: 124 WIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYS 183
           WIEHADSISCL V+ G+IYSGSWDKTLKVWR++DLKCLESIKAHDDA+NGLVA  G VYS
Sbjct: 170 WIEHADSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYS 229

Query: 184 ASADGKIKAWGKELGKS---------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS 234
           ASADGK+K WGKE  K            H LK  LEG  +VS+NSVVVS DG WVYGGGS
Sbjct: 230 ASADGKVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGS 289

Query: 235 DGFVMGW-----EGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA 289
           DGFV+GW     EG+ E   W+L  ET+ H MAVLC+C+VGE +CSGSADKSIG+W+RE 
Sbjct: 290 DGFVIGWEKKEKEGDFE--EWRLGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREV 347

Query: 290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346
            G LC+ G I GHEGPVKCLQASPN VG GF+LYSG LDKSLRVWWV KQ +  + +
Sbjct: 348 TGMLCKFGVIHGHEGPVKCLQASPNNVGAGFMLYSGGLDKSLRVWWVPKQDNLEEKK 404

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816456|ref|XP_002876111.1| hypothetical protein ARALYDRAFT_485550 [Arabidopsis lyrata subsp. lyrata] gi|297321949|gb|EFH52370.1| hypothetical protein ARALYDRAFT_485550 [Arabidopsis lyrata subsp. lyrata]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/353 (73%), Positives = 293/353 (83%), Gaps = 11/353 (3%)

Query: 5   SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           +++ LAVLS HVGSVSSLALCGEF+LSASQGKDIIVWQQPDL++F KFG GDGSVKA+V+
Sbjct: 50  AYKPLAVLSAHVGSVSSLALCGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVS 109

Query: 65  VGNKVFTAHQDSRIRVWKVSR-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123
           VG+KVFTAHQDSRIRVWKVSR +SEN FRLVDTLPTTKDYLGKFMKQSNYVQTRR+HKRL
Sbjct: 110 VGSKVFTAHQDSRIRVWKVSRRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRL 169

Query: 124 WIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYS 183
           WIEHADSISCL V+ G+IYSGSWDKTLKVWR++DLKCLESIKAHDDA+NGLVA  G VYS
Sbjct: 170 WIEHADSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYS 229

Query: 184 ASADGKIKAWGKELGKS-------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236
           ASADGKIK WG++  K          H LK  LEG  +VS+NSVVVS DG WVYGGGSDG
Sbjct: 230 ASADGKIKIWGRDKRKQIESTSSSSSHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDG 289

Query: 237 FVMGWEGN---VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL 293
           FVMGWE      ++  W+L  E + H MAVLC+C+VGE +CSGSADKSIG+W+RE  G L
Sbjct: 290 FVMGWEKREKGEDLEEWRLGFEMRGHNMAVLCMCVVGEMVCSGSADKSIGLWRRETSGIL 349

Query: 294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE 346
           C+ G I GHEGPVKCLQASPN VG GF+LYSG LDKSLRVWWV K  +  + +
Sbjct: 350 CKFGVIHGHEGPVKCLQASPNNVGAGFMLYSGGLDKSLRVWWVPKHDNLEEKK 402

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2083710	415	AT3G51930 "AT3G51930" [Arabido	0.915	0.778	0.713	1.4e-128
TAIR|locus:2066276	465	AT2G26490 "AT2G26490" [Arabido	0.895	0.679	0.425	2.5e-65
TAIR|locus:2015423	351	AT1G47610 "AT1G47610" [Arabido	0.858	0.863	0.436	7.6e-64
TAIR|locus:2085929	473	AT3G18950 "AT3G18950" [Arabido	0.881	0.657	0.410	3.9e-60
TAIR|locus:2010157	471	AT1G49450 "AT1G49450" [Arabido	0.878	0.658	0.425	2.7e-59
TAIR|locus:2074825	469	AT3G50390 "AT3G50390" [Arabido	0.895	0.673	0.398	5.9e-57
TAIR|locus:2116194	495	AT4G34380 "AT4G34380" [Arabido	0.881	0.628	0.386	9.6e-57
TAIR|locus:2170061	388	AT5G50120 "AT5G50120" [Arabido	0.781	0.711	0.394	2e-55
TAIR|locus:2024031	418	AT1G24530 "AT1G24530" [Arabido	0.858	0.724	0.398	3.7e-55
TAIR|locus:2032452	415	AT1G24130 "AT1G24130" [Arabido	0.781	0.665	0.394	6.1e-54

TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)]

 Score = 1262 (449.3 bits), Expect = 1.4e-128, P = 1.4e-128
 Identities = 241/338 (71%), Positives = 268/338 (79%)

Query:    25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS 84
             CGEF+LSASQGKDIIVWQQPDL++F KFG GDGSVKA+V+VG+KVFTAHQDSRIRVWKVS
Sbjct:    70 CGEFLLSASQGKDIIVWQQPDLKIFAKFGQGDGSVKALVSVGSKVFTAHQDSRIRVWKVS 129

Query:    85 R-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYS 143
             R +SEN FRLVDTLPTTKDYLGKFMKQSNYVQTRR+HKRLWIEHADSISCL V+ G+IYS
Sbjct:   130 RRNSENAFRLVDTLPTTKDYLGKFMKQSNYVQTRRNHKRLWIEHADSISCLAVHAGIIYS 189

Query:   144 GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGK---- 199
             GSWDKTLKVWR++DLKCLESIKAHDDA+NGLVA  G VYSASADGK+K WGKE  K    
Sbjct:   190 GSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYSASADGKVKIWGKEKRKQIES 249

Query:   200 -----SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNV---EIVRWK 251
                  S  H LK  LEG              G WVYGGGSDGFV+GWE      +   W+
Sbjct:   250 TSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDGFVIGWEKKEKEGDFEEWR 309

Query:   252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA 311
             L  ET+ H MAVLC+C+VGE +CSGSADKSIG+W+RE  G LC+ G I GHEGPVKCLQA
Sbjct:   310 LGFETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGVIHGHEGPVKCLQA 369

Query:   312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKS 349
             SPN VG GF+LYSG LDKSLRVWWV KQ +    E+KS
Sbjct:   370 SPNNVGAGFMLYSGGLDKSLRVWWVPKQDNLE--EKKS 405

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 142/334 (42%), Positives = 205/334 (61%)

Query:    27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRS 86
             + + + S  K+I VW+  +L+ F+ F    G VKA+V  G K+FT HQD +IRVWKVS  
Sbjct:   107 DLLYTGSDSKNIRVWK--NLKEFSAFKCNSGLVKAIVISGEKIFTGHQDGKIRVWKVSPK 164

Query:    87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG 144
             ++++ +   TLPT KD     +K  NYV+ ++H   LWI+HAD++SCL++ +  GL+YS 
Sbjct:   165 NQSLHKRSGTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHADAVSCLSLNDEQGLLYSA 224

Query:   145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KGIVYSASADGKIKAWGKEL-GKSHC 202
             SWD+T+KVWR+AD KCLESI AHDDAVN +V++ + IV+S SADG +KAW ++  GK   
Sbjct:   225 SWDRTIKVWRIADSKCLESIPAHDDAVNSVVSTTEAIVFSGSADGTVKAWKRDQQGKYTK 284

Query:   203 HSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA 262
             H+L   L   +            G  VY G SDG V  WE   ++    +    K H++A
Sbjct:   285 HTLMQTLTKQESAVTALAVSKN-GAAVYFGSSDGLVNFWEREKQLNYGGIL---KGHKLA 340

Query:   263 VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGG--- 319
             VLC+ + G  + SGSADK+I +WKR+     C +  +TGH GPVKCL    +        
Sbjct:   341 VLCLEVAGSLVFSGSADKTICVWKRDGNIHTC-LSVLTGHTGPVKCLAVEADREASERRD 399

Query:   320 --FLLYSGSLDKSLRVWWVSKQSSTSDSEEKSII 351
               +++YSGSLDKS++VW VS+  S  D  + S++
Sbjct:   400 KKWIVYSGSLDKSVKVWGVSE--SFIDMNQMSMM 431

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 142/325 (43%), Positives = 193/325 (59%)

Query:    27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGN-KVFTAHQDSRIRVWKVSR 85
             + + + S    I VW+  +L  F+ F    G VKA+V     KVFT HQD +IRVWK S 
Sbjct:    35 DLLYTGSDNNYIRVWK--NLNEFSGFKSNSGLVKAIVISREAKVFTGHQDGKIRVWKTSS 92

Query:    86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS 143
              +  V+    +LP  KD L   +K SNYV+ RR    LWI+H+D++SCL++    GL+YS
Sbjct:    93 KNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALWIKHSDAVSCLSLAEDQGLLYS 152

Query:   144 GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKEL-GKSHC 202
              SWD+T+KVWR+ DLKC+ESIKAHDDAVN +  ++ +V++ SADG +K W +E+ GK   
Sbjct:   153 ASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTAESLVFTGSADGTVKVWKREIRGKRTA 212

Query:   203 HSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWE-GNVEIVRWKLACET-KAHE 260
             HSL   L   +               VY G SDG V  WE G+ ++++    CE  K H 
Sbjct:   213 HSLFQTLLKQESAVTALVTSHMA---VYSGSSDGAVNFWEMGDKKLLKH---CEVFKKHR 266

Query:   261 MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG--- 317
             +AVLC+   G+ L SG+ADK I +W+RE     C V  +TGH GPVKCL     + G   
Sbjct:   267 LAVLCIAAAGKLLFSGAADKKICVWRREGKVHTC-VSVLTGHTGPVKCLAVVEPSGGEEE 325

Query:   318 -GG---FLLYSGSLDKSLRVWWVSK 338
              GG    +LYSGSLDKS++VW V +
Sbjct:   326 DGGDGRLVLYSGSLDKSVKVWRVPR 350

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 135/329 (41%), Positives = 191/329 (58%)

Query:    26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVG-NKVFTAHQDSRIRVWKVS 84
             G+ + + S  K+I VW+  DL+  T F    G VKA+V  G N++FT HQD +IRVW+ S
Sbjct:   148 GDLLFTGSDSKNIRVWK--DLKDHTGFKSTSGLVKAIVITGDNRIFTGHQDGKIRVWRGS 205

Query:    85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY 142
             +     +  + +LPT K++L K +   NYV+ RR    L I H D++SCL++    GL+Y
Sbjct:   206 KRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLKIRHYDAVSCLSLNEELGLLY 265

Query:   143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KGIVYSASADGKIKAWGKEL-GKS 200
             SGSWDKTLKVWR++D KCLESI+AHDDA+N + A    ++++ SADG +K W +EL GK 
Sbjct:   266 SGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFDDLLFTGSADGTLKVWKRELQGKG 325

Query:   201 HCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE 260
               H L  +L   +               VY G SDG V  WEG   +         + H 
Sbjct:   326 TKHFLVNVLMKQENAVTALAVNITAAV-VYCGSSDGTVNFWEGQKYLSH---GGTLRGHR 381

Query:   261 MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG-- 318
             +AVLC+   G  + SG ADK+I +W+R   G    +  +  H GPVKCL A  +   G  
Sbjct:   382 LAVLCLAAAGSLVLSGGADKNICVWRRNGDGSHSCLSVLMDHVGPVKCLTAVEDDGEGHR 441

Query:   319 --G---FLLYSGSLDKSLRVWWVSKQSST 342
               G   +++YSGSLDKS++VW V++ +ST
Sbjct:   442 EKGDQKWIVYSGSLDKSVKVWRVTESAST 470

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 142/334 (42%), Positives = 191/334 (57%)

Query:    26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKA-VVTVGNKVFTAHQDSRIRVWKVS 84
             G+ + + S  K+I VW+  DL+ F+ F    G VKA VVT  N+VFT HQD +IRVW+ S
Sbjct:   144 GDLLFTGSDSKNIRVWK--DLKDFSGFKSTSGFVKAIVVTRDNRVFTGHQDGKIRVWRGS 201

Query:    85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY 142
             + +   +  V +LPT K++L K +   NYV+ RR    L I H D++SCL++    GL+Y
Sbjct:   202 KKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVLKIRHFDAVSCLSLNEDLGLLY 261

Query:   143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KGIVYSASADGKIKAWGKEL-GKS 200
             SGSWDKTLKVWR++D KCLESI+AHDDAVN +V+    +V++ SADG +K W +E+ GK 
Sbjct:   262 SGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDDLVFTGSADGTLKVWKREVQGKE 321

Query:   201 HCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE 260
               H L  +L   +               VY G SDG V  WE    +           H 
Sbjct:   322 MKHVLVQVLMKQENAVTALAVNLTDAV-VYCGSSDGTVNFWERQKYLTH---KGTIHGHR 377

Query:   261 MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV---- 316
             MAVLC+   G  L SG ADK+I +WKR   G    +  +  HEGPVKCL A   A     
Sbjct:   378 MAVLCLATAGSLLLSGGADKNICVWKRNGDGSHTCLSVLMDHEGPVKCLAAVEEAEEDHN 437

Query:   317 -G--GG------FLLYSGSLDKSLRVWWVSKQSS 341
              G  GG      +++YSGSLD S++VW V+  +S
Sbjct:   438 DGDDGGEKGDQRWIVYSGSLDNSVKVWRVTDYAS 471

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 133/334 (39%), Positives = 187/334 (55%)

Query:    26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSR 85
             G+ + + S  K+I VW+      F+ F    G VKA+V  G+K+FT HQD +IRVWK + 
Sbjct:   108 GDLLYTGSDSKNIRVWKNHV--EFSSFKSNSGLVKAIVLAGDKIFTGHQDGKIRVWKAAS 165

Query:    86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQ-TRRHHKR--LWIEHADSISCLTVYNG--L 140
                NV R V T+P   DY+   +  S+Y   TRR+     L   H D+ISCL +     L
Sbjct:   166 KESNVHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAALGFRHLDAISCLALSEDKRL 225

Query:   141 IYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KGIVYSASADGKIKAWGKE-LG 198
             +YSGSWDKT KVWRV+DL+C+ES+ AH+DAVN +V+   G+V++ SADG +K W +E   
Sbjct:   226 LYSGSWDKTFKVWRVSDLRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQA 285

Query:   199 KSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA 258
             K   H     L   +               VY G SDG V  WE    +   K     K 
Sbjct:   286 KDTKHFFSETLL-KQDCAVTAIAVDQSATLVYCGSSDGTVNFWERENNM---KNGGVLKG 341

Query:   259 HEMAVLCVCLVGEFLCSGSADKSIGIWKR-EAFGKLCRVGAITGHEGPVKCL--QASPNA 315
             H++AVLC+   G  + SGSAD  I +W+R E  G+   +  +TGH GPVKCL  +    +
Sbjct:   342 HKLAVLCLVAAGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLAVERDQES 401

Query:   316 VGGG--FLLYSGSLDKSLRVWWVSKQSSTSDSEE 347
             V G   +++YSGSLD+S+++W VS+ S    ++E
Sbjct:   402 VSGERRWIVYSGSLDRSVKMWRVSESSPPMVNQE 435

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 129/334 (38%), Positives = 194/334 (58%)

Query:    26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSR 85
             G+ + + S  K+I VW+  +L+    F    G +KA+V  G+++FT HQD +IR+WKVS+
Sbjct:   135 GDLLYTGSDSKNIRVWK--NLKEHAGFKSSSGLIKAIVIFGDRIFTGHQDGKIRIWKVSK 192

Query:    86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT--VYNGLIYS 143
                   + V TLPT K  +   +   ++++ RR+   +  +H D++S L+  V  GL+YS
Sbjct:   193 RKPGKHKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKTKHNDAVSSLSLDVELGLLYS 252

Query:   144 GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KGIVYSASADGKIKAWGKEL-GKSH 201
              SWD T+KVWR+AD KCLESI AHDDA+N +++    +V++ SADG +K W +EL GK  
Sbjct:   253 SSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDDLVFTGSADGTVKVWKRELQGKGT 312

Query:   202 CHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM 261
              H+L  +L   +               VY G SDG V  WE +       +    K H+ 
Sbjct:   313 KHTLAQVLLKQENAVTALAVKSQSSI-VYCGSSDGLVNYWERSKRSFTGGIL---KGHKS 368

Query:   262 AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR-VGAITGHEGPVKCL---------QA 311
             AVLC+ + G  L SGSADK+I +W+R+   K  + +  +TGH GPVKCL         Q 
Sbjct:   369 AVLCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVKCLAVEEERACHQG 428

Query:   312 SPNAVGGG---FLLYSGSLDKSLRVWWVSKQSST 342
             +  +V  G   +++YSGSLDKS++VW VS++ +T
Sbjct:   429 AKASVAEGDRKWIIYSGSLDKSVKVWRVSERMAT 462

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
 Identities = 120/304 (39%), Positives = 172/304 (56%)

Query:    55 GDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRS-SENV----FRLVDTLPTTKDYLGKFMK 109
             G G+VK++V + +K+FTAHQD +IRVWK++    E+V    +  + T+PT  D   K + 
Sbjct:    87 GGGAVKSLVILADKLFTAHQDHKIRVWKINDVVEEDVGGKKYMHLATMPTISDRFAKCLM 146

Query:   110 QSNYVQTRRHHKRLWIEHADSISCLTVY-NG-LIYSGSWDKTLKVWRVADLKCLESI-KA 166
               N V+ RRH K  W+ H D++S L +  +G L+YS SWD+TLK+WR  D KCLES   A
Sbjct:   147 PKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNA 206

Query:   167 HDDAVNGLVASK-GIVYSASADGKIKAWGKELG-----KSHCHSLKGILEGHKXXXXXXX 220
             HDDA+N +  S+ G +Y+ S+D +IK W K +      K   HSL  IL  H        
Sbjct:   207 HDDAINAVALSENGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINALA 266

Query:   221 XXXXXGKWVYGGGSDGFVMGWE----GNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG 276
                  G  ++ GGSDG ++ WE    G++ +V        + H  +VLC+ +V + LCSG
Sbjct:   267 LSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGM-----LRGHTESVLCLAVVSDILCSG 321

Query:   277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA----SPNAVGGGFLLYSGSLDKSLR 332
             SADK++ +WK  A    C +  + GH GPVKCL      S  A    + +YSG LD  ++
Sbjct:   322 SADKTVRLWKCSAKDYSC-LAMLEGHLGPVKCLTGAFRDSRKADEASYHIYSGGLDSQVK 380

Query:   333 VWWV 336
             VW V
Sbjct:   381 VWQV 384

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 128/321 (39%), Positives = 181/321 (56%)

Query:    26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGD---GSVKAVVTVGNKVFTAHQDSRIRVWK 82
             G ++ + S G ++ ++ +        F   D   G+VK+V   G K+FTAHQD +I VWK
Sbjct:    93 GGYLFAVS-GHEVSIYDRDMCAHLDTFNGQDPFSGTVKSVGFSGEKIFTAHQDGKIGVWK 151

Query:    83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIY 142
             ++  S   ++ + TLPT  D L +F    NYVQ RRH KRLWIEHAD+++ L V +G IY
Sbjct:   152 LTAKSG--YKQLTTLPTLNDRLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVSDGFIY 209

Query:   143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGL-VASKGIVYSASADGKIKAWGKELGKSH 201
             S SWDKTLK+WR +DL+C ESIKAHDDAVN + V++ G VY+ SAD +I+ W K  G+  
Sbjct:   210 SVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVSTNGTVYTGSADRRIRVWAKPTGEKR 269

Query:   202 CHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWE----GNVEIVRWKLACETK 257
              H+L   LE HK            G  ++ G  D  ++ WE     N   VR  L    +
Sbjct:   270 -HTLVATLEKHKSAVNALALNDD-GSVLFSGSCDRSILVWEREDTSNYMAVRGAL----R 323

Query:   258 AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA-SPNAV 316
              H+ A+L +  V + L SGSAD+++ IW+R        +  ++GH  PVK L A     +
Sbjct:   324 GHDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKEL 383

Query:   317 GGGFLLYSGSLDKSLRVWWVS 337
                  + SGSLD  ++ W VS
Sbjct:   384 DDVVSIISGSLDGEVKCWKVS 404

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 118/299 (39%), Positives = 168/299 (56%)

Query:    54 HGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSEN---VFRLVDTLPTTKDYLGKFMKQ 110
             +G+G VK++V +G+K+ +AHQD +IRVWK+   S      ++ V TLPT  D        
Sbjct:   115 NGNGGVKSLVILGDKLISAHQDHKIRVWKIIDESNRRGQKYKCVATLPTMNDRFKTLFSS 174

Query:   111 SNYVQTRRHHKRLWIEHADSISCLTV-YNG-LIYSGSWDKTLKVWRVADLKCLESI-KAH 167
              +YV+ RRH K  W+ H D++S L +  +G L+YS SWD++ K+WR +D KCL+SI KAH
Sbjct:   175 KSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRTSDFKCLDSIEKAH 234

Query:   168 DDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXG 226
             DDA+N +V SK G VY+ SAD KIK W K   K   HSL   L  H             G
Sbjct:   235 DDAINAIVVSKDGFVYTGSADKKIKVWNK---KDKKHSLVATLTKH-LSAVNALAISEDG 290

Query:   227 KWVYGGGSDGFVMGWE----GNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSI 282
             K +Y G  D  ++ WE    G+ E +   +    + H  A++C+ +  + + SGSADKS+
Sbjct:   291 KVLYSGACDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVASDLVLSGSADKSL 350

Query:   283 GIWKR---EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF----LLYSGSLDKSLRVW 334
              +W+R   E  G  C +  + GH  PVK L  S +          ++YSGSLD SL+VW
Sbjct:   351 RVWRRGLMEKEGYSC-LAVLEGHTKPVKSLAVSVSDSDSNSDYSCMVYSGSLDLSLKVW 408

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.7208.1	hypothetical protein (323 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.47.1	hypothetical protein (385 aa)			•						0.503
	gw1.IV.3052.1	hypothetical protein (207 aa)			•						0.503
	gw1.VIII.402.1	hypothetical protein (356 aa)			•						0.501
	fgenesh4_pg.C_LG_XIV000767	hypothetical protein (534 aa)			•						0.499
	eugene3.00150723	hypothetical protein (401 aa)			•						0.499
	estExt_Genewise1_v1.C_LG_X6506	hypothetical protein (370 aa)			•						0.498
	eugene3.00140830	hypothetical protein (166 aa)			•						0.497
	estExt_Genewise1_v1.C_LG_XIV0120	hypothetical protein (258 aa)			•						0.495
	fgenesh4_pg.C_LG_XIV000147	hypothetical protein (451 aa)			•						0.494
	gw1.III.285.1	hypothetical protein (500 aa)			•						0.491

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  139 bits (353), Expect = 5e-39
 Identities = 93/338 (27%), Positives = 130/338 (38%), Gaps = 61/338 (18%)

Query: 8   SLAVLSGHVGSVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVT 64
               L GH G V+ +A    G+ + + S    I VW      +     GH  G V+ V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAA 59

Query: 65  V--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR 122
              G  + +   D  IR+W +            T    +   G                 
Sbjct: 60  SADGTYLASGSSDKTIRLWDLE-----------TGECVRTLTG----------------- 91

Query: 123 LWIEHADSISCLTV--YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--K 178
               H   +S +       ++ S S DKT+KVW V   KCL +++ H D VN +  S   
Sbjct: 92  ----HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147

Query: 179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV 238
             V S+S DG IK W    GK         L GH    +NSV  S DG+ +    SDG +
Sbjct: 148 TFVASSSQDGTIKLWDLRTGK-----CVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTI 201

Query: 239 MGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRV 296
             W    ++   K     + HE  V  V     G  L SGS D +I +W          V
Sbjct: 202 KLW----DLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---CV 254

Query: 297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
             ++GH   V  L  SP+    G  L SGS D ++R+W
Sbjct: 255 QTLSGHTNSVTSLAWSPD----GKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.8 bits (203), Expect = 2e-17
 Identities = 93/345 (26%), Positives = 141/345 (40%), Gaps = 61/345 (17%)

Query: 7   RSLAVLSGHVGSVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGD-----GSV 59
            S  +L GH  S++S+A    GE +LS S    I +W   +     K   G        +
Sbjct: 56  LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKL 115

Query: 60  KAVVTVGNKVFTA--HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR 117
                 GN +  A    D  +++W +S   + +  L                        
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG---------------------- 153

Query: 118 RHHKRLWIEHADSISCLTV---YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174
                    H++S++ L        L    S D T+K+W +   K L ++  H D V+ L
Sbjct: 154 ---------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204

Query: 175 VAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG 231
             S     ++ S S+DG I+ W    GK     L+  L GH D  ++S   S DG  +  
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGK----LLRSTLSGHSDSVVSS--FSPDGSLLAS 258

Query: 232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREA 289
           G SDG +  W  ++      L      H  +VL V     G+ L SGS+D ++ +W  E 
Sbjct: 259 GSSDGTIRLW--DLRSSSSLLRT-LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
            GKL     + GHEGPV  L  SP+   G  L+  GS D ++R+W
Sbjct: 316 -GKLLSSLTLKGHEGPVSSLSFSPD---GSLLVSGGSDDGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.7 bits (169), Expect = 4e-13
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 16/235 (6%)

Query: 120 HKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRV-ADLKCLESIKAHDDAVNGLVASK 178
              L       +S  +    L+ SGS D T+++W + +    L ++  H  +V  +  S 
Sbjct: 235 RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 179 --GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG 236
              ++ S S+DG ++ W  E GK         L+GH+    +     D    V GG  DG
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSL---TLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV 296
            +  W+         L   +    ++       G  + SGS D ++ +W       L   
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSF---SPDGRVVSSGSTDGTVRLWDLSTGSLLRN- 407

Query: 297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSII 351
             + GH   V  L  SP+    G  L SGS D ++R+W +     +        +
Sbjct: 408 --LDGHTSRVTSLDFSPD----GKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKV 456

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.0 bits (162), Expect = 3e-12
 Identities = 69/284 (24%), Positives = 111/284 (39%), Gaps = 27/284 (9%)

Query: 67  NKVFTAHQDSRIRVWKVSRSSENVF--RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
           + +     +  I     S   E +       T+       G+ + +S          +L 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVA-DLKCLESIKAHDDAVNGLVAS---KGI 180
           +   D  S L        S S D T+K+W ++   K + +++ H ++V  L  S   K +
Sbjct: 117 LSSPDGNSILLA------SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG 240
              +S DG IK W    GK         L GH D   +     D G  +  G SDG +  
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLS-----TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Query: 241 W-EGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
           W     +++R  L+  +      V      G  L SGS+D +I +W   +   L R   +
Sbjct: 226 WDLSTGKLLRSTLSGHSD---SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--L 280

Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343
           +GH   V  +  SP+    G LL SGS D ++R+W +      S
Sbjct: 281 SGHSSSVLSVAFSPD----GKLLASGSSDGTVRLWDLETGKLLS 320

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 67/261 (25%), Positives = 106/261 (40%), Gaps = 28/261 (10%)

Query: 4   KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVW--QQPDLRMFTKFGHGDGS 58
           ++ + L+ L+GH   VSSLA     G  I S S    I +W      L   T  GH D  
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 59  VKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL---------VDTLPTTKDYLGKFMK 109
           V +    G+ + +   D  IR+W +  SS  +  L         V   P  K        
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 110 QSNYVQTRRHHKRLW----IEHADSISCLTV---YNGLIYSGSWDKTLKVWRVADLKCLE 162
            +  +      K L       H   +S L+     + L+  GS D T+++W +   K L+
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365

Query: 163 SIKAHDDAVNGLVASKGIVYS-ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV 221
           +++ H + ++   +  G V S  S DG ++ W    G      L   L+GH    + S+ 
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS-----LLRNLDGHTS-RVTSLD 419

Query: 222 VSDDGKWVYGGGSDGFVMGWE 242
            S DGK +  G SD  +  W+
Sbjct: 420 FSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 257 KAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           K H   V CV     G+ L +GS D +I +W  E    L     + GH GPV+ + AS +
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASAD 62

Query: 315 AVGGGFLLYSGSLDKSLRVWWVSKQSSTS 343
               G  L SGS DK++R+W +       
Sbjct: 63  ----GTYLASGSSDKTIRLWDLETGECVR 87

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 44/160 (27%)

Query: 4   KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKA 61
           ++ + +A L+GH G V+S+A    GE +LS+S    I +W   DL      G   G    
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW---DLSTGKCLGTLRGHENG 221

Query: 62  VVTV-----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT 116
           V +V     G  + +  +D  IRVW                                ++T
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWD-------------------------------LRT 250

Query: 117 RRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR 154
               + L   H +S++ L        + SGS D T+++W 
Sbjct: 251 GECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
           +  + GH GPV  +  SP+    G  L SGS D ++++W
Sbjct: 5   LKTLKGHTGPVTSVAFSPD----GKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
           +  + GH GPV  +  SP+    G LL SGS D ++RVW
Sbjct: 4   LRTLKGHTGPVTSVAFSPD----GNLLASGSDDGTVRVW 38

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.98
PTZ00420	568	coronin; Provisional	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG1188	376	consensus WD40 repeat protein [General function pr	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG0649	325	consensus WD40 repeat protein [General function pr	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.9
KOG1334	559	consensus WD40 repeat protein [General function pr	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.85
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.8
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.73
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.71
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.68
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.67
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.66
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.61
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
KOG4547	541	consensus WD40 repeat-containing protein [General	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.51
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.51
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.49
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.45
KOG2139	445	consensus WD40 repeat protein [General function pr	99.45
PRK03629	429	tolB translocation protein TolB; Provisional	99.43
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.41
KOG2315	566	consensus Predicted translation initiation factor	99.4
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.39
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.38
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.38
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.28
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.28
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
PRK00178	430	tolB translocation protein TolB; Provisional	99.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.22
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.22
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.21
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.21
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.2
COG4946	668	Uncharacterized protein related to the periplasmic	99.19
KOG2315	566	consensus Predicted translation initiation factor	99.18
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.18
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.17
PRK00178	430	tolB translocation protein TolB; Provisional	99.16
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.14
KOG2314	698	consensus Translation initiation factor 3, subunit	99.14
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.11
KOG2695	425	consensus WD40 repeat protein [General function pr	99.11
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.1
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.1
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.09
KOG2695	425	consensus WD40 repeat protein [General function pr	99.09
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.09
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.08
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.07
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.04
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.0
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.0
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
PRK01029	428	tolB translocation protein TolB; Provisional	98.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.94
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
COG4946	668	Uncharacterized protein related to the periplasmic	98.91
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.84
PRK01029	428	tolB translocation protein TolB; Provisional	98.84
KOG3621	726	consensus WD40 repeat-containing protein [General	98.84
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.84
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.81
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.81
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.81
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.77
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.73
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.72
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.72
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.62
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.61
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.6
KOG2314	698	consensus Translation initiation factor 3, subunit	98.52
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.5
KOG3621	726	consensus WD40 repeat-containing protein [General	98.49
PRK04043	419	tolB translocation protein TolB; Provisional	98.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.45
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.42
PRK04043	419	tolB translocation protein TolB; Provisional	98.38
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.36
PHA02713	557	hypothetical protein; Provisional	98.35
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.28
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.27
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.24
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.24
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.21
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.19
KOG2444	238	consensus WD40 repeat protein [General function pr	98.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.16
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.15
PHA02713	557	hypothetical protein; Provisional	98.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.14
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.1
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.07
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.98
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.91
PRK02888	635	nitrous-oxide reductase; Validated	97.9
COG5276	370	Uncharacterized conserved protein [Function unknow	97.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.76
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.73
COG5276	370	Uncharacterized conserved protein [Function unknow	97.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.69
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.69
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.67
PHA03098	534	kelch-like protein; Provisional	97.63
PHA03098	534	kelch-like protein; Provisional	97.57
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.54
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.49
PHA02790	480	Kelch-like protein; Provisional	97.45
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.45
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.44
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.4
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.37
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.37
KOG2444	238	consensus WD40 repeat protein [General function pr	97.36
PRK02888	635	nitrous-oxide reductase; Validated	97.34
KOG2395	644	consensus Protein involved in vacuole import and d	97.32
KOG2395	644	consensus Protein involved in vacuole import and d	97.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.23
PHA02790	480	Kelch-like protein; Provisional	97.16
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.15
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.05
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.77
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.74
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.74
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.67
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.58
COG3391	381	Uncharacterized conserved protein [Function unknow	96.5
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.41
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.31
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.27
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.08
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.01
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.96
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.65
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.65
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.49
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.45
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.45
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.45
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.43
COG3391	381	Uncharacterized conserved protein [Function unknow	95.43
KOG2247	615	consensus WD40 repeat-containing protein [General	95.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.29
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.29
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.24
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.18
PLN02193	470	nitrile-specifier protein	95.15
PLN02153	341	epithiospecifier protein	95.13
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.11
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.08
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.02
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.95
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.89
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.76
PRK13684	334	Ycf48-like protein; Provisional	94.58
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.54
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.54
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.39
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.23
PLN02153	341	epithiospecifier protein	93.97
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.95
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.74
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.72
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.64
COG5167	776	VID27 Protein involved in vacuole import and degra	93.57
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.17
PRK13616	591	lipoprotein LpqB; Provisional	93.01
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.94
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.9
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.81
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	92.77
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.69
COG5167	776	VID27 Protein involved in vacuole import and degra	92.59
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	92.34
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.31
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.18
PLN02193	470	nitrile-specifier protein	92.08
COG4590	733	ABC-type uncharacterized transport system, permeas	91.97
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.89
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.79
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.66
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.66
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	91.51
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.43
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.2
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.06
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	91.0
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.65
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.48
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.48
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.35
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.61
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.54
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	89.47
KOG2247	615	consensus WD40 repeat-containing protein [General	89.4
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.31
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.69
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.36
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.35
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	87.98
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	87.84
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	87.29
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	87.15
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.15
COG1520	370	FOG: WD40-like repeat [Function unknown]	86.1
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.05
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.66
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.21
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	85.03
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.19
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	83.84
KOG3616	1636	consensus Selective LIM binding factor [Transcript	83.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	83.57
PF08309	42	LVIVD: LVIVD repeat; InterPro: IPR013211 This repe	83.12
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	82.54
PRK13684	334	Ycf48-like protein; Provisional	81.98
PRK13616	591	lipoprotein LpqB; Provisional	80.76

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-55  Score=329.04  Aligned_cols=294  Identities=25%  Similarity=0.379  Sum_probs=264.1

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      .++-..+.||.++|.|++|+  |..|++|+.|.++|+||+.+..+..+.++|...|.+++|+  +..|++|+.||+|++|
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            34567889999999999997  8999999999999999999999999999999999999998  8999999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-------CeEEEecCCCcEEEEE
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-------GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~~~dg~v~iwd  154 (353)
                      |..++++    .                           .+.+.+|...|++++|.|       .+|++++.||.|+|||
T Consensus       185 dpktg~~----~---------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  185 DPKTGQQ----I---------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             cCCCCCc----c---------------------------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            9988862    1                           223348999999999987       6899999999999999


Q ss_pred             cCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc----------
Q 018591          155 VADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS----------  223 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------  223 (353)
                      +..+.++..+.+|..+|+|+.| .++++++++.|++|++|+...+.     +.+.+++|...+ +.++.+          
T Consensus       234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-----~~r~lkGHahwv-N~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-----LCRELKGHAHWV-NHLALSTDYVLRTGAF  307 (480)
T ss_pred             ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh-----HHHhhcccchhe-eeeeccchhhhhcccc
Confidence            9999999999999999999999 57899999999999999999987     889999998887 888776          


Q ss_pred             -CCCC-------------------------eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEE
Q 018591          224 -DDGK-------------------------WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCS  275 (353)
Q Consensus       224 -~~~~-------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  275 (353)
                       |.++                         .+++|+.|.++.+|+.....   +++....+|...|..+.+  +++++|+
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IAS  384 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIAS  384 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEE
Confidence             3233                         49999999999999987653   466677888888866655  6999999


Q ss_pred             ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ++.|..|++||.++++   .+..++||-++|+.++|+.|    .++|++||.|.++++|++++.+..+.+.
T Consensus       385 aSFDkSVkLW~g~tGk---~lasfRGHv~~VYqvawsaD----sRLlVS~SkDsTLKvw~V~tkKl~~DLp  448 (480)
T KOG0271|consen  385 ASFDKSVKLWDGRTGK---FLASFRGHVAAVYQVAWSAD----SRLLVSGSKDSTLKVWDVRTKKLKQDLP  448 (480)
T ss_pred             eecccceeeeeCCCcc---hhhhhhhccceeEEEEeccC----ccEEEEcCCCceEEEEEeeeeeecccCC
Confidence            9999999999999998   88999999999999999999    9999999999999999999998877765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-53  Score=320.79  Aligned_cols=286  Identities=28%  Similarity=0.417  Sum_probs=259.1

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee-EEeccCceeeEEEEEe-------CCEEEE
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDGSVKAVVTV-------GNKVFT   71 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~-------~~~l~s   71 (353)
                      .+.+..+.++.+||...|.|++|+  |+.||+|+.||+|++||.++|+++ ..+.+|...|++++|.       ..+|++
T Consensus       143 D~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las  222 (480)
T KOG0271|consen  143 DLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS  222 (480)
T ss_pred             ccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceec
Confidence            356778899999999999999996  999999999999999999988766 6789999999999996       568999


Q ss_pred             ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcE
Q 018591           72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTL  150 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v  150 (353)
                      ++.||.++|||+..+.     +                           ...+.+|+.+|+|+.|-. +++++|+.|++|
T Consensus       223 ~skDg~vrIWd~~~~~-----~---------------------------~~~lsgHT~~VTCvrwGG~gliySgS~DrtI  270 (480)
T KOG0271|consen  223 SSKDGSVRIWDTKLGT-----C---------------------------VRTLSGHTASVTCVRWGGEGLIYSGSQDRTI  270 (480)
T ss_pred             ccCCCCEEEEEccCce-----E---------------------------EEEeccCccceEEEEEcCCceEEecCCCceE
Confidence            9999999999998765     2                           233348999999999997 999999999999


Q ss_pred             EEEEcCCceeeeeccccCcceEEEEEe-------------CC-------------------------eEEEEcCCCcEEE
Q 018591          151 KVWRVADLKCLESIKAHDDAVNGLVAS-------------KG-------------------------IVYSASADGKIKA  192 (353)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~-------------~~-------------------------~l~~~~~dg~i~i  192 (353)
                      ++|+...|.+.+.+++|...|+.++.+             ++                         .+++|+.|.++.+
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl  350 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL  350 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence            999999999999999999999999775             22                         4999999999999


Q ss_pred             EeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C
Q 018591          193 WGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G  270 (353)
Q Consensus       193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  270 (353)
                      |+....+    .++..+.+|+..+ +.+.||||++++++++.|..|++|+.+++    ++...+++|-..|..++|+  .
T Consensus       351 W~p~~~k----kpi~rmtgHq~lV-n~V~fSPd~r~IASaSFDkSVkLW~g~tG----k~lasfRGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  351 WNPFKSK----KPITRMTGHQALV-NHVSFSPDGRYIASASFDKSVKLWDGRTG----KFLASFRGHVAAVYQVAWSADS  421 (480)
T ss_pred             ecccccc----cchhhhhchhhhe-eeEEECCCccEEEEeecccceeeeeCCCc----chhhhhhhccceeEEEEeccCc
Confidence            9987655    3677888998876 99999999999999999999999999999    7888999999999999996  6


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      ++|++|+.|.++++|++++.+   ....+.||...|.++.|+||    |..+++|+.|..+++|.
T Consensus       422 RLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~vDwspD----G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAVDWSPD----GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEEEecCC----CceeecCCCceEEEeec
Confidence            699999999999999999877   77789999999999999999    99999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.8e-50  Score=306.57  Aligned_cols=274  Identities=22%  Similarity=0.380  Sum_probs=251.4

Q ss_pred             eCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEEEcccC
Q 018591           13 SGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        13 ~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      -|-+.+|..+.|+  ++.|+|||.+|.++||+.++...++++.+|...|.++.|.    +..+++|+.||++++|++++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            3567899999996  8999999999999999999999999999999999999997    347999999999999999886


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      .     .+..+                           .+|...|..++|+|  ++|++++.|.+-++||++++..+...
T Consensus       252 ~-----~l~~l---------------------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q  299 (459)
T KOG0272|consen  252 T-----PLQDL---------------------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ  299 (459)
T ss_pred             c-----chhhh---------------------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh
Confidence            5     33333                           38999999999999  99999999999999999999999889


Q ss_pred             cccCcceEEEEE-e-CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          165 KAHDDAVNGLVA-S-KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       165 ~~~~~~v~~i~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      ++|...|.+++| . +..+++|+.|..-++||+++++     .+..+.+|...+ .+++|+|+|..+++|+.|++++|||
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-----~im~L~gH~k~I-~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-----CIMFLAGHIKEI-LSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCc-----EEEEecccccce-eeEeECCCceEEeecCCCCcEEEee
Confidence            999999999999 3 3388999999999999999998     888999998887 9999999999999999999999999


Q ss_pred             ccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCC
Q 018591          243 GNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGG  319 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  319 (353)
                      ++..    .....+.+|..-|..+.++   |.+|++++.|++++||...+..   ++..+.||++.|.++..+|+    +
T Consensus       374 LR~r----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---~~ksLaGHe~kV~s~Dis~d----~  442 (459)
T KOG0272|consen  374 LRMR----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---PLKSLAGHEGKVISLDISPD----S  442 (459)
T ss_pred             eccc----ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc---cchhhcCCccceEEEEeccC----C
Confidence            9988    4577888999988877765   8899999999999999999887   88999999999999999999    9


Q ss_pred             eEEEEccCCCeEEEEE
Q 018591          320 FLLYSGSLDKSLRVWW  335 (353)
Q Consensus       320 ~~l~s~~~dg~i~iw~  335 (353)
                      ++++|++.|.++++|.
T Consensus       443 ~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  443 QAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceEEEeccCceeeecc
Confidence            9999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.2e-48  Score=280.93  Aligned_cols=287  Identities=25%  Similarity=0.377  Sum_probs=253.0

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      +..++|+||.+.|+++.|+  .++++++|.||.+.|||.-+....+.++-....|...+|+  ++++++|+-|+...||+
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            4458999999999999995  8899999999999999999988888888889999999997  89999999999999999


Q ss_pred             cccCc-cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCcee
Q 018591           83 VSRSS-ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      +.+.. +...+.                           .+.+.+|.+.+.|+.|.+ ..|++++.|.+..+||+++++.
T Consensus       126 ls~~d~~g~~~v---------------------------~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  126 LSTRDAEGNVRV---------------------------SRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             ccccccccccee---------------------------eeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceE
Confidence            98653 111122                           233448999999999999 9999999999999999999999


Q ss_pred             eeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          161 LESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      +..|.+|.+.|.++.++|   +.+++|+-|+..++||++.+.     ..+.+.+|...+ +++.|.|+|.-+++|+.|++
T Consensus       179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-----c~qtF~ghesDI-Nsv~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-----CVQTFEGHESDI-NSVRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-----eeEeeccccccc-ceEEEccCCCeeeecCCCce
Confidence            999999999999999944   499999999999999999998     899999999987 99999999999999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA  315 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  315 (353)
                      .++||++..+......  .......++++++  +|++|++|..|.++.+||.-.++   .+..+.+|+..|+++..+|| 
T Consensus       253 cRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e---~vg~L~GHeNRvScl~~s~D-  326 (343)
T KOG0286|consen  253 CRLYDLRADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---RVGVLAGHENRVSCLGVSPD-  326 (343)
T ss_pred             eEEEeecCCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeeccccc---eEEEeeccCCeeEEEEECCC-
Confidence            9999999874332222  2233455666666  49999999999999999998877   77788999999999999999 


Q ss_pred             CCCCeEEEEccCCCeEEEEE
Q 018591          316 VGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~  335 (353)
                         |..++|||.|..++||.
T Consensus       327 ---G~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  327 ---GMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ---CcEEEecchhHheeecC
Confidence               99999999999999994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.2e-47  Score=285.28  Aligned_cols=279  Identities=24%  Similarity=0.351  Sum_probs=250.2

Q ss_pred             ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           15 HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      ....|+|+.++.+.+++|..|++|+|||..+..+...+.+|++.|.|+.|+...+++|+.|.+|++||+++++     + 
T Consensus       196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge-----~-  269 (499)
T KOG0281|consen  196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE-----P-  269 (499)
T ss_pred             cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-----h-
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999987     2 


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce---eeeeccccCcce
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAV  171 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v  171 (353)
                                                ...+.+|...|..+.|+++++++++.|.++.+||+....   +.+.+.+|...|
T Consensus       270 --------------------------l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  270 --------------------------LNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  323 (499)
T ss_pred             --------------------------hhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence                                      333448999999999999999999999999999997654   345678999999


Q ss_pred             EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591          172 NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK  251 (353)
Q Consensus       172 ~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  251 (353)
                      +.+.|++.++++++.|.+|++|++.+.+     ..+.+.+|...+ .++.+  .++++++|+.|.+|++||+..+    .
T Consensus       324 NvVdfd~kyIVsASgDRTikvW~~st~e-----fvRtl~gHkRGI-AClQY--r~rlvVSGSSDntIRlwdi~~G----~  391 (499)
T KOG0281|consen  324 NVVDFDDKYIVSASGDRTIKVWSTSTCE-----FVRTLNGHKRGI-ACLQY--RDRLVVSGSSDNTIRLWDIECG----A  391 (499)
T ss_pred             eeeccccceEEEecCCceEEEEecccee-----eehhhhcccccc-eehhc--cCeEEEecCCCceEEEEecccc----H
Confidence            9999999999999999999999999998     899999999876 66655  4889999999999999999999    7


Q ss_pred             eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce------EEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      +...+.+|+.-+.|+.|+.+.+++|+.||+|++||+..+..+      .++..+..|++.|..+.|..      ..++++
T Consensus       392 cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~------fqIvss  465 (499)
T KOG0281|consen  392 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE------FQIISS  465 (499)
T ss_pred             HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc------eEEEec
Confidence            888899999999999999999999999999999999887644      24556678999999999984      589999


Q ss_pred             cCCCeEEEEEcCCCCCcc
Q 018591          326 SLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       326 ~~dg~i~iw~~~~~~~~~  343 (353)
                      +.|.+|.|||+.++-.-+
T Consensus       466 sHddtILiWdFl~~~~~~  483 (499)
T KOG0281|consen  466 SHDDTILIWDFLNGPPSA  483 (499)
T ss_pred             cCCCeEEEEEcCCCCccc
Confidence            999999999998765443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-45  Score=274.93  Aligned_cols=288  Identities=19%  Similarity=0.352  Sum_probs=256.5

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      .+++.+++.||.+.|.|++++  +++|++|+.|++++|||+.+|++..++.+|-..|..++++  -.|+++++.|+.|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            457778899999999999998  7899999999999999999999999999999999999999  679999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||++..+     .                           .+-+.+|-..|.|++.+|  +.|++|+.|..+++||+++.
T Consensus       220 wDLe~nk-----v---------------------------IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr  267 (460)
T KOG0285|consen  220 WDLEYNK-----V---------------------------IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR  267 (460)
T ss_pred             Eechhhh-----h---------------------------HHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence            9999876     2                           334458999999999999  99999999999999999999


Q ss_pred             eeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      ..+..+.+|..+|..+.+.  +..+++|+.|++|++||++.++     ....+..|...+ .+++.+|....+++++.|.
T Consensus       268 ~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk-----t~~tlt~hkksv-ral~lhP~e~~fASas~dn  341 (460)
T KOG0285|consen  268 ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK-----TMITLTHHKKSV-RALCLHPKENLFASASPDN  341 (460)
T ss_pred             ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc-----eeEeeeccccee-eEEecCCchhhhhccCCcc
Confidence            9999999999999999994  5699999999999999999998     666777777766 9999999999999999886


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccC-----CCcCeEEEE
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITG-----HEGPVKCLQ  310 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----h~~~v~~~~  310 (353)
                       |+-|++..+    .+...+.+|...+.+++.+ ..++++|+.+|.+.+||.+++-+.+.......     .+..|.+.+
T Consensus       342 -ik~w~~p~g----~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~  416 (460)
T KOG0285|consen  342 -IKQWKLPEG----EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASC  416 (460)
T ss_pred             -ceeccCCcc----chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEe
Confidence             999999988    6777789999999999986 77999999999999999999876655543321     245689999


Q ss_pred             eecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      |...    |..|++|..|.+|++|.-.+.
T Consensus       417 fDkt----g~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  417 FDKT----GSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             eccc----CceEEeccCCcceEEEecccc
Confidence            9998    999999999999999975543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-44  Score=259.01  Aligned_cols=285  Identities=28%  Similarity=0.402  Sum_probs=235.1

Q ss_pred             CceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCC-----CceeeEEeccCceeeEEEEEe--CCEEEEecCC
Q 018591            6 HRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQP-----DLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD   75 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~-----~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d   75 (353)
                      .....+|++|++.|+.++..   .+.+++++.|.++.+|++.     .|..++.+.+|+..|..+..+  +++.++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            34567899999999999994   7799999999999999864     467789999999999998876  8999999999


Q ss_pred             CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEE
Q 018591           76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVW  153 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iw  153 (353)
                      +++++||+.+++                                ..+.|.+|...|.+++|++  ..+++|+.|++|++|
T Consensus        85 ~~lrlWDl~~g~--------------------------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw  132 (315)
T KOG0279|consen   85 GTLRLWDLATGE--------------------------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW  132 (315)
T ss_pred             ceEEEEEecCCc--------------------------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence            999999999875                                3455569999999999999  899999999999999


Q ss_pred             EcCCceeeeecccc--CcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          154 RVADLKCLESIKAH--DDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       154 d~~~~~~~~~~~~~--~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      |.. +.+..++..+  .+.|.|+.|+|+    .+++++.|+++++||+++.+     +...+.+|.+.+ +.+++||||.
T Consensus       133 nt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~~~v-~t~~vSpDGs  205 (315)
T KOG0279|consen  133 NTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHSGYV-NTVTVSPDGS  205 (315)
T ss_pred             eec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhccccccccE-EEEEECCCCC
Confidence            985 4455444333  789999999554    89999999999999999988     888899999887 9999999999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEecc-ccCC---
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGH---  302 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h---  302 (353)
                      .+++|+.||.+.+||++.++    .. ....+...|.+++|. .++.++...+..|+|||++++.....+.. ..+.   
T Consensus       206 lcasGgkdg~~~LwdL~~~k----~l-ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~  280 (315)
T KOG0279|consen  206 LCASGGKDGEAMLWDLNEGK----NL-YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSK  280 (315)
T ss_pred             EEecCCCCceEEEEEccCCc----ee-EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccc
Confidence            99999999999999999984    32 234567778888887 34555555666799999998763222211 1111   


Q ss_pred             --CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          303 --EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       303 --~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                        .-.-.+++|+++    |..|++|-.|+.|++|.+..
T Consensus       281 ~~~~~clslaws~d----G~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  281 AGDPICLSLAWSAD----GQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cCCcEEEEEEEcCC----CcEEEeeecCCcEEEEEeec
Confidence              223577899999    99999999999999998753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.3e-44  Score=255.07  Aligned_cols=279  Identities=22%  Similarity=0.325  Sum_probs=238.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY  103 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  103 (353)
                      .-+|+|+|.|.+||+|...+|.+..++.+..+.|+.+...  +..|++++. ..||+||++++...              
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--------------   74 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--------------   74 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--------------
Confidence            4589999999999999999999999999999999999987  556666665 59999999988732              


Q ss_pred             eeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--
Q 018591          104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--  179 (353)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--  179 (353)
                                      +...+.+|...|+++.|..  ..+++|++||+++|||++...+.+.++ |..+|+++..+++  
T Consensus        75 ----------------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt  137 (311)
T KOG0315|consen   75 ----------------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT  137 (311)
T ss_pred             ----------------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc
Confidence                            3445558999999999987  899999999999999999977777764 6799999999554  


Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc--cceeeeeecc
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI--VRWKLACETK  257 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~  257 (353)
                      .|+++..+|.|++||+....     +...+.......+.++...|||.+++.+...|..++|++-...  ....+...++
T Consensus       138 eLis~dqsg~irvWDl~~~~-----c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~  212 (311)
T KOG0315|consen  138 ELISGDQSGNIRVWDLGENS-----CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ  212 (311)
T ss_pred             eEEeecCCCcEEEEEccCCc-----cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee
Confidence            89999999999999999886     5555555555667999999999999999999999999987643  2345666778


Q ss_pred             ccceeEEEE--EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          258 AHEMAVLCV--CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       258 ~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      .|...++.+  +|++++|++++.|.+++||+.++.  +..-..+.+|...+...+||.|    +.||++|+.|+.+++|+
T Consensus       213 ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~d----g~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  213 AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSAD----GEYLVTASSDHTARLWD  286 (311)
T ss_pred             cccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccC----ccEEEecCCCCceeecc
Confidence            888877665  556999999999999999999876  3355568899999999999999    99999999999999999


Q ss_pred             cCCCCCcccccC
Q 018591          336 VSKQSSTSDSEE  347 (353)
Q Consensus       336 ~~~~~~~~~~~~  347 (353)
                      ++.++.+.+...
T Consensus       287 ~~~~k~v~qy~g  298 (311)
T KOG0315|consen  287 LSAGKEVRQYQG  298 (311)
T ss_pred             cccCceeeecCC
Confidence            999998877653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-43  Score=261.99  Aligned_cols=283  Identities=21%  Similarity=0.333  Sum_probs=252.8

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      ..+.+.+.||..+|+.+-|+  -..+++++.|++|++||..++++...+.+|...+..+.|+  |.++++++.|=.+++|
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW  177 (406)
T ss_pred             CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence            34567788999999999997  4577888899999999999999999999999999999998  8999999999889999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      |.++...    +                           .+...+|...|.++.|-|  +++++++.|.+|+.|++.++.
T Consensus       178 d~~~~~~----c---------------------------~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~  226 (406)
T KOG0295|consen  178 DFDTFFR----C---------------------------IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY  226 (406)
T ss_pred             eHHHHHH----H---------------------------HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce
Confidence            9876321    1                           122238999999999999  999999999999999999999


Q ss_pred             eeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC------------
Q 018591          160 CLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD------------  225 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------  225 (353)
                      ++.++.+|...|..+.... + .+++++.|.++++|-+.+++     +...++.|+..+ .+++|-|.            
T Consensus       227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~-----~k~~lR~hEh~v-Eci~wap~~~~~~i~~at~~  300 (406)
T KOG0295|consen  227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ-----CKAELREHEHPV-ECIAWAPESSYPSISEATGS  300 (406)
T ss_pred             eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-----hhhhhhccccce-EEEEecccccCcchhhccCC
Confidence            9999999999999999933 3 88899999999999999987     777888888766 89998662            


Q ss_pred             ---CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEecccc
Q 018591          226 ---GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT  300 (353)
Q Consensus       226 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  300 (353)
                         ++++.+++.|++|++||+.++    .+..++.+|...|..++++  |+||+++..|+++++||+++.+   ++..+.
T Consensus       301 ~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~---cmk~~~  373 (406)
T KOG0295|consen  301 TNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ---CMKTLE  373 (406)
T ss_pred             CCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce---eeeccC
Confidence               258999999999999999999    7888899999999998887  9999999999999999999887   888889


Q ss_pred             CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      .|+..++++.|..+    ..+++||+-|.++++|.-
T Consensus       374 ah~hfvt~lDfh~~----~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  374 AHEHFVTSLDFHKT----APYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCcceeEEEecCCC----CceEEeccccceeeeeec
Confidence            99999999999999    789999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-43  Score=284.05  Aligned_cols=334  Identities=19%  Similarity=0.327  Sum_probs=264.6

Q ss_pred             CCCCCceeeeeeC-ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecC
Q 018591            2 PCKSHRSLAVLSG-HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQ   74 (353)
Q Consensus         2 ~~~~~~~~~~l~~-h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~   74 (353)
                      .+++++.++.++. |++||.-++|+  +.+|++|+.||.|+|||+..+.+...|.+|.+.|.++.|.    ...|++|..
T Consensus        90 ~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~  169 (775)
T KOG0319|consen   90 SLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGAT  169 (775)
T ss_pred             EcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCC
Confidence            4678899999998 99999999997  8899999999999999999999999999999999999998    346899999


Q ss_pred             CCcEEEEEcccCcc---------c-----------------------------eeEEeeccccc----------------
Q 018591           75 DSRIRVWKVSRSSE---------N-----------------------------VFRLVDTLPTT----------------  100 (353)
Q Consensus        75 dg~i~~w~~~~~~~---------~-----------------------------~~~~~~~~~~~----------------  100 (353)
                      |+++++||+++...         .                             ..+....+|..                
T Consensus       170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~  249 (775)
T KOG0319|consen  170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGK  249 (775)
T ss_pred             CceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCc
Confidence            99999999985431         0                             00000000000                


Q ss_pred             cceeeeeccc-------------------------------------------c--------------------------
Q 018591          101 KDYLGKFMKQ-------------------------------------------S--------------------------  111 (353)
Q Consensus       101 ~~~~~~~~~~-------------------------------------------~--------------------------  111 (353)
                      ..++...-..                                           .                          
T Consensus       250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm  329 (775)
T KOG0319|consen  250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM  329 (775)
T ss_pred             ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence            0000000000                                           0                          


Q ss_pred             -------e------------eEeecccceeeeeecCCceEEEE-EeC-CeEEEecCCCcEEEEEcCCc----eeeeeccc
Q 018591          112 -------N------------YVQTRRHHKRLWIEHADSISCLT-VYN-GLIYSGSWDKTLKVWRVADL----KCLESIKA  166 (353)
Q Consensus       112 -------~------------~~~~~~~~~~~~~~~~~~i~~~~-~~~-~~l~~~~~dg~v~iwd~~~~----~~~~~~~~  166 (353)
                             +            +.......-.++.+|...|.++. +.. .+|++|+.|+++++|.++++    .++....+
T Consensus       330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g  409 (775)
T KOG0319|consen  330 KFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG  409 (775)
T ss_pred             eecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence                   0            00001111123448999999999 444 59999999999999987443    34566789


Q ss_pred             cCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccce----eeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          167 HDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLK----GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       167 ~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      |.+.|.++++   ...+|+++|.|+++++|++...+....++.    .....|...+ ++++++|+.+++++|+.|.+.+
T Consensus       410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI-N~Vaia~ndkLiAT~SqDktaK  488 (775)
T KOG0319|consen  410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI-NCVAIAPNDKLIATGSQDKTAK  488 (775)
T ss_pred             cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc-cceEecCCCceEEeccccccee
Confidence            9999999999   334999999999999999987432222222    2445677666 9999999999999999999999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (353)
                      +|+++..    .....+.+|...+.++.|.  .+.+++++.|++|+||.+.+..   ++.++.||+..|..+.|-.+   
T Consensus       489 iW~le~~----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---ClkT~eGH~~aVlra~F~~~---  558 (775)
T KOG0319|consen  489 IWDLEQL----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---CLKTFEGHTSAVLRASFIRN---  558 (775)
T ss_pred             eecccCc----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce---eeeeecCccceeEeeeeeeC---
Confidence            9999966    7888999999999999987  5699999999999999999887   99999999999999999999   


Q ss_pred             CCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          318 GGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       318 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                       ++.|+|++.||-|++|++++..|+.++..
T Consensus       559 -~~qliS~~adGliKlWnikt~eC~~tlD~  587 (775)
T KOG0319|consen  559 -GKQLISAGADGLIKLWNIKTNECEMTLDA  587 (775)
T ss_pred             -CcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence             99999999999999999999999987764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-42  Score=269.49  Aligned_cols=288  Identities=20%  Similarity=0.258  Sum_probs=250.8

Q ss_pred             eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC----ceeeEEec----------cCceeeEEEEEe--CCEEE
Q 018591           10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD----LRMFTKFG----------HGDGSVKAVVTV--GNKVF   70 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~----~~~~~~~~----------~~~~~v~~~~~~--~~~l~   70 (353)
                      ..++ |+.+|.+.+|+   ...+++|+.|-..++|++..    +.....++          .....|++++|+  |+.|+
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            3445 99999999997   44899999999999999864    11111111          124689999998  99999


Q ss_pred             EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591           71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK  148 (353)
Q Consensus        71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg  148 (353)
                      +|+.||.+++|+.....      +                           ..+..|.++|.++.|+.  ++|++++.|+
T Consensus       252 tG~~~G~~riw~~~G~l------~---------------------------~tl~~HkgPI~slKWnk~G~yilS~~vD~  298 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGNL------I---------------------------STLGQHKGPIFSLKWNKKGTYILSGGVDG  298 (524)
T ss_pred             EeecCcEEEEEecCchh------h---------------------------hhhhccCCceEEEEEcCCCCEEEeccCCc
Confidence            99999999999987654      1                           22237999999999999  8999999999


Q ss_pred             cEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          149 TLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       149 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      ++.+||..+++..+.+..|..+-..+.| +++.+++++.|+.|+++.+....     +...+.+|.+.+ .++.|+|.+.
T Consensus       299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-----P~~t~~GH~g~V-~alk~n~tg~  372 (524)
T KOG0273|consen  299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-----PVKTFIGHHGEV-NALKWNPTGS  372 (524)
T ss_pred             cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC-----cceeeecccCce-EEEEECCCCc
Confidence            9999999999999999999988788999 77799999999999999998887     888899998887 9999999999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-----------CcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-----------GEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      +|++++.|++++||+....    .....+..|...|..+.|+           +..+++++.|++|++||+..+.   ++
T Consensus       373 LLaS~SdD~TlkiWs~~~~----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---~i  445 (524)
T KOG0273|consen  373 LLASCSDDGTLKIWSMGQS----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---PI  445 (524)
T ss_pred             eEEEecCCCeeEeeecCCC----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---ee
Confidence            9999999999999998877    6777788899888887774           4589999999999999999988   78


Q ss_pred             ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCC
Q 018591          297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK  348 (353)
Q Consensus       297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  348 (353)
                      ..+..|..+|++++|+|+    |+++|+|+.||.|.+|+.++++..+.....
T Consensus       446 ~~f~kH~~pVysvafS~~----g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  446 HTLMKHQEPVYSVAFSPN----GRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             EeeccCCCceEEEEecCC----CcEEEecCCCCeeEeccccchheeEeecCC
Confidence            889899999999999999    999999999999999999999988877654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2e-42  Score=253.46  Aligned_cols=283  Identities=21%  Similarity=0.323  Sum_probs=243.9

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe-CCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ-QPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd-~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      .++..+.||++.|+.+.|+  |.+||||+.|..|.+|+ ....+-...+++|.+.|..+.|.  ++.+++++.|.+++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            4667889999999999996  99999999999999999 55667778889999999999997  8999999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~  158 (353)
                      |.++++     .                           .+.+.+|..-|+++....   .++.+++.|+++++||+++.
T Consensus       118 D~~tG~-----~---------------------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen  118 DAETGK-----R---------------------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             ecccce-----e---------------------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            999987     2                           223337888898888554   78899999999999999999


Q ss_pred             eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +++++++. ..+++++.|  ..+.+++|+-|+.|++||++...     ....+.+|.+.+ +.+..+|+|.++.+-+.|.
T Consensus       166 ~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-----~~~~lsGh~DtI-t~lsls~~gs~llsnsMd~  238 (338)
T KOG0265|consen  166 EAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-----GLYTLSGHADTI-TGLSLSRYGSFLLSNSMDN  238 (338)
T ss_pred             chhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCc-----ceEEeecccCce-eeEEeccCCCccccccccc
Confidence            99888854 678999999  44499999999999999999888     889999999987 9999999999999999999


Q ss_pred             cEEEeeccccccceeeeeeccccce----e--EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEM----A--VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~----~--v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~  310 (353)
                      ++++||++.-.+...++..+.+|.-    .  -.+.++++..+.+|+.|..+++||.....   .+..+.||.+.|.+++
T Consensus       239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~lyklpGh~gsvn~~~  315 (338)
T KOG0265|consen  239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---ILYKLPGHYGSVNEVD  315 (338)
T ss_pred             eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---EEEEcCCcceeEEEee
Confidence            9999999876544454554444321    2  24455568899999999999999988766   7888999999999999


Q ss_pred             eecCCCCCCeEEEEccCCCeEEEEE
Q 018591          311 ASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      |+|.    ..+|.+++.|.+|.+=+
T Consensus       316 Fhp~----e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  316 FHPT----EPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ecCC----CcEEEEeccCceeEeec
Confidence            9999    89999999999998643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-41  Score=243.73  Aligned_cols=288  Identities=23%  Similarity=0.340  Sum_probs=237.9

Q ss_pred             CceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC---ceeeEEe-ccCceeeEEEEEe--CCEEEEecCCC
Q 018591            6 HRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD---LRMFTKF-GHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~---~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      ...++.+++|++.|..++|+   |..|||++.|+.||+|+...   -.+...+ .+|+..|.+++|+  +++|++++.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            34578899999999999998   44899999999999999875   3344344 5789999999997  99999999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      ++.||.-..++   +.++..+                           .||..+|.|++|++  ++||+++.|+.|-+|.
T Consensus        84 t~~Iw~k~~~e---fecv~~l---------------------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   84 TVVIWKKEDGE---FECVATL---------------------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             eEEEeecCCCc---eeEEeee---------------------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            99999977554   3444443                           38999999999999  9999999999999999


Q ss_pred             cCC---ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591          155 VAD---LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       155 ~~~---~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  229 (353)
                      +..   .++...++.|...|..+.|+|  ++|++++.|.+|++|+-..+  ....+...+.+|...+ .+++|+|.|..|
T Consensus       134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TV-W~~~F~~~G~rl  210 (312)
T KOG0645|consen  134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTV-WSLAFDNIGSRL  210 (312)
T ss_pred             ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccceE-EEEEecCCCceE
Confidence            863   568889999999999999976  69999999999999987732  2345788899998865 999999999999


Q ss_pred             EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc---ceEEec-cccCCCcC
Q 018591          230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG---KLCRVG-AITGHEGP  305 (353)
Q Consensus       230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~-~~~~h~~~  305 (353)
                      ++++.|++++||-....        ....|...+..+.++...|++++.|+.|++|.-...-   ....+. .-..|...
T Consensus       211 ~s~sdD~tv~Iw~~~~~--------~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d  282 (312)
T KOG0645|consen  211 VSCSDDGTVSIWRLYTD--------LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD  282 (312)
T ss_pred             EEecCCcceEeeeeccC--------cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc
Confidence            99999999999976532        1234667788888888899999999999999866421   111222 34578899


Q ss_pred             eEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      |++++|.|.   ...+|++++.||.|++|.+.
T Consensus       283 VNsV~w~p~---~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  283 VNSVQWNPK---VSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cceEEEcCC---CCCceeecCCCceEEEEEec
Confidence            999999994   26799999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-41  Score=240.78  Aligned_cols=277  Identities=17%  Similarity=0.314  Sum_probs=237.8

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~   83 (353)
                      .++.|.+|+++|..+.|+  |+|.++++.|.+|++|+...+.+++++.+|...|..++.+  +..+++|+.|..+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            467899999999999996  9999999999999999999999999999999999988765  788999999999999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC--ce
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD--LK  159 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~--~~  159 (353)
                      ++++     .                           .+.|.+|.+.|+.+.|+.  ..+++|+.|..+++||.++  .+
T Consensus        89 ~TGk-----v---------------------------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   89 NTGK-----V---------------------------DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             ccCe-----e---------------------------eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence            9987     2                           445559999999999998  8999999999999999875  57


Q ss_pred             eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          160 CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      +++.+......|.++...+..+++|+.||++|.||++.++     ...   ...+.+|+++.|+++++..++++.|++++
T Consensus       137 PiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~-----l~s---Dy~g~pit~vs~s~d~nc~La~~l~stlr  208 (307)
T KOG0316|consen  137 PIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGT-----LSS---DYFGHPITSVSFSKDGNCSLASSLDSTLR  208 (307)
T ss_pred             ccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecce-----eeh---hhcCCcceeEEecCCCCEEEEeeccceee
Confidence            8899988889999999999999999999999999999987     333   33344569999999999999999999999


Q ss_pred             EeeccccccceeeeeeccccceeEE----EEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcC-eEEEEeecC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVL----CVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP-VKCLQASPN  314 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~  314 (353)
                      +.|-.++    ++....++|...-.    |+.-+..++++|++||.|++||+.+..   .+..+..+... |.++.+.|.
T Consensus       209 LlDk~tG----klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~---~~sk~~~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  209 LLDKETG----KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET---QISKLSVVSTVIVTDLSCHPT  281 (307)
T ss_pred             ecccchh----HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce---eeeeeccCCceeEEeeecccC
Confidence            9999999    67777777765443    333347799999999999999999877   56667777777 899999998


Q ss_pred             CCCCCeEEEEccCCCeEEEEEc
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                          ...|+++..- .+..|.-
T Consensus       282 ----~~~f~~A~~~-~~~~~~~  298 (307)
T KOG0316|consen  282 ----MDDFITATGH-GDLFWYQ  298 (307)
T ss_pred             ----ccceeEecCC-ceeceee
Confidence                6667777543 4566643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.9e-43  Score=268.36  Aligned_cols=242  Identities=19%  Similarity=0.295  Sum_probs=221.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC----CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC----GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      .+..+.+.+|.||++.|.++.|+    +..||||+.||++++|++++-.++..+.+|...|..++|+  |++|+|++.|.
T Consensus       204 ~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~  283 (459)
T KOG0272|consen  204 VPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS  283 (459)
T ss_pred             cCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc
Confidence            35567899999999999999996    4589999999999999999999999999999999999998  99999999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      +-++||++++.+...+                                .||...|.+++|.+  .++++|+.|..-++||
T Consensus       284 tWRlWD~~tk~ElL~Q--------------------------------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  284 TWRLWDLETKSELLLQ--------------------------------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             chhhcccccchhhHhh--------------------------------cccccccceeEecCCCceeeccCccchhheee
Confidence            9999999998742222                                29999999999999  8999999999999999


Q ss_pred             cCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEe
Q 018591          155 VADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYG  231 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  231 (353)
                      +++++++..+.+|..+|.+++|+|+  .+++|+.|++++|||++..+     ....+.+|.+.+ +.+.|+| .|.+|++
T Consensus       332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~-----~ly~ipAH~nlV-S~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS-----ELYTIPAHSNLV-SQVKYSPQEGYFLVT  405 (459)
T ss_pred             cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc-----cceecccccchh-hheEecccCCeEEEE
Confidence            9999999999999999999999555  89999999999999999887     688889999876 9999999 7899999


Q ss_pred             ecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEe
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWK  286 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~  286 (353)
                      ++.|+++++|...+.    .+...+.+|...|.++..  ++..+++++.|+++++|.
T Consensus       406 asyD~t~kiWs~~~~----~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  406 ASYDNTVKIWSTRTW----SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccCcceeeecCCCc----ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999887    788889999999988866  588999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.8e-43  Score=262.71  Aligned_cols=251  Identities=23%  Similarity=0.349  Sum_probs=226.7

Q ss_pred             CCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEc
Q 018591            4 KSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~   83 (353)
                      .+..++..|.||++.|.|+.|+.+.+++||.|.+|+|||+++++++.++-+|...|..+.|+++++++++.|.++.+||+
T Consensus       225 n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm  304 (499)
T KOG0281|consen  225 NSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDM  304 (499)
T ss_pred             ccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEec
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeee
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLES  163 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  163 (353)
                      ......                             ...+++.||...|+.+.|+..++++++.|.+|++|++.+++++++
T Consensus       305 ~sps~i-----------------------------t~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRt  355 (499)
T KOG0281|consen  305 ASPTDI-----------------------------TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRT  355 (499)
T ss_pred             cCchHH-----------------------------HHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehh
Confidence            876411                             113445599999999999999999999999999999999999999


Q ss_pred             ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591          164 IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG  243 (353)
Q Consensus       164 ~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  243 (353)
                      +.+|...|-|+.+.+.++++|+.|.+|++||+..+.     +++.+++|..-+ .++.|.  .+.+++|..||+|++||+
T Consensus       356 l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~-----cLRvLeGHEeLv-RciRFd--~krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  356 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-----CLRVLEGHEELV-RCIRFD--NKRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             hhcccccceehhccCeEEEecCCCceEEEEeccccH-----HHHHHhchHHhh-hheeec--CceeeeccccceEEEEec
Confidence            999999999999999999999999999999999998     999999999877 999997  568999999999999999


Q ss_pred             cccccce-----eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591          244 NVEIVRW-----KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       244 ~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      .......     -+...+..|.+.|..+.|+...+++++.|.+|.|||..++.
T Consensus       428 ~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  428 QAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             ccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence            8864321     13445667899999999999999999999999999998754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.5e-42  Score=269.50  Aligned_cols=284  Identities=18%  Similarity=0.330  Sum_probs=241.3

Q ss_pred             ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      +.++++.||+..|+++.|.   +.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+  +..+++++.|+.+++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            5678999999999999994   89999999999999999765 99999999999999999998  899999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~  157 (353)
                      ||++++.     ++..+                            .-...++|+.|+|   +.+++|+.|+.|+.||+++
T Consensus       285 wDtETG~-----~~~~f----------------------------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  285 WDTETGQ-----VLSRF----------------------------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             eccccce-----EEEEE----------------------------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence            9999997     33332                            2345678999988   7899999999999999999


Q ss_pred             ceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591          158 LKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ++.++++..|-+.|..+.|  .+..+++.+.|+++++|+.+.+-     +......+......++..+|+++++++-+.|
T Consensus       332 ~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d  406 (503)
T KOG0282|consen  332 GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-----PIKNIADPEMHTMPCLTLHPNGKWFAAQSMD  406 (503)
T ss_pred             hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-----cchhhcchhhccCcceecCCCCCeehhhccC
Confidence            9999999999999999999  34499999999999999998876     3333222222234789999999999999999


Q ss_pred             CcEEEeeccccccceeeeeecccccee----EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMA----VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~  311 (353)
                      ..|.+|.+... ........+.+|..+    -..++++|++|++|+.||.+.+||.++-+   .+..+++|.+++..+.|
T Consensus       407 N~i~ifs~~~~-~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---l~~~lkah~~~ci~v~w  482 (503)
T KOG0282|consen  407 NYIAIFSTVPP-FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---LVSKLKAHDQPCIGVDW  482 (503)
T ss_pred             ceEEEEecccc-cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---hhhccccCCcceEEEEe
Confidence            99999996553 233344456666543    24456679999999999999999999877   78889999999999999


Q ss_pred             ecCCCCCCeEEEEccCCCeEEEEE
Q 018591          312 SPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      +|-.   ...+|+++.||.|++|+
T Consensus       483 HP~e---~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  483 HPVE---PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCC---cceeEecccCceeEecC
Confidence            9974   56899999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.8e-42  Score=261.94  Aligned_cols=276  Identities=21%  Similarity=0.339  Sum_probs=241.5

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      +.+|..|.|.  |+.|++|+..|.+.+|+..+......+..|..+|.++.|+  +.++++|+.+|.|++|+.+.....  
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk--  173 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK--  173 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH--
Confidence            4588999995  8999999999999999987766666678999999999998  899999999999999998765411  


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDD  169 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  169 (353)
                          .+.                          ..|...|++++|+|  ..+++++.||+|+|||....+....+.+|.-
T Consensus       174 ----~~~--------------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw  223 (464)
T KOG0284|consen  174 ----IIQ--------------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW  223 (464)
T ss_pred             ----Hhh--------------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC
Confidence                111                          14569999999999  8999999999999999999988889999999


Q ss_pred             ceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591          170 AVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       170 ~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  247 (353)
                      .|.+++|++  +++++++.|..|++||.+++.     ++..+..|...+ ..+.|+|++++|++++.|..+++||+++. 
T Consensus       224 dVksvdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKntV-l~~~f~~n~N~Llt~skD~~~kv~DiR~m-  296 (464)
T KOG0284|consen  224 DVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKNTV-LAVKFNPNGNWLLTGSKDQSCKVFDIRTM-  296 (464)
T ss_pred             CcceeccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccceE-EEEEEcCCCCeeEEccCCceEEEEehhHh-
Confidence            999999944  499999999999999999998     888999998876 99999999999999999999999999965 


Q ss_pred             cceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591          248 VRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s  324 (353)
                         +-...+++|...++++.|.   ..+|.+|+.||.|..|.+...+.  ....-.+|...|++++|+|-    |.+|++
T Consensus       297 ---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p--~~~i~~AHd~~iwsl~~hPl----Ghil~t  367 (464)
T KOG0284|consen  297 ---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP--LGEIPPAHDGEIWSLAYHPL----GHILAT  367 (464)
T ss_pred             ---HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc--ccCCCcccccceeeeecccc----ceeEee
Confidence               5666788999999999875   78999999999999999985442  22234589999999999999    999999


Q ss_pred             ccCCCeEEEEEcCCC
Q 018591          325 GSLDKSLRVWWVSKQ  339 (353)
Q Consensus       325 ~~~dg~i~iw~~~~~  339 (353)
                      |+.|.++++|.-..+
T Consensus       368 gsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  368 GSNDRTVRFWTRNRP  382 (464)
T ss_pred             cCCCcceeeeccCCC
Confidence            999999999976543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.7e-39  Score=254.08  Aligned_cols=325  Identities=22%  Similarity=0.329  Sum_probs=253.7

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec---cCceeeEEEEEe--CCEEEEecCCCc
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG---HGDGSVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      ..+.-.+++.|..-|+|+.|+  |.++||++.||+|.+||-.+++.+..+.   +|.+.|.+++|+  +..+++++.|.+
T Consensus       179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt  258 (603)
T KOG0318|consen  179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT  258 (603)
T ss_pred             CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence            345566788899999999996  9999999999999999999999999997   899999999998  789999999999


Q ss_pred             EEEEEcccCccceeEEeeccccc----cceeeeecccce-----------eEe-ecccceeeeeecCCceEEEEEeC--C
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTT----KDYLGKFMKQSN-----------YVQ-TRRHHKRLWIEHADSISCLTVYN--G  139 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~i~~~~~~~--~  139 (353)
                      +++||+.+.+     ++.+++..    ...++.......           ++. .......++.+|...|+++..++  .
T Consensus       259 ~KIWdVs~~s-----lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~  333 (603)
T KOG0318|consen  259 IKIWDVSTNS-----LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK  333 (603)
T ss_pred             EEEEEeeccc-----eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC
Confidence            9999999886     33333322    222222222222           111 11224566779999999999999  8


Q ss_pred             eEEEecCCCcEEEEEcCCceeeeec-cccCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCccc---------------
Q 018591          140 LIYSGSWDKTLKVWRVADLKCLESI-KAHDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHC---------------  202 (353)
Q Consensus       140 ~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~---------------  202 (353)
                      +|++|+.||.|.-||..++..-+.. +.|...|.+++... +.+++.+.|.++++.++.......               
T Consensus       334 ~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav  413 (603)
T KOG0318|consen  334 TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAV  413 (603)
T ss_pred             EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEE
Confidence            9999999999999999988765554 67999999999955 799999999999999774332100               


Q ss_pred             -----------ccceeeeec-------cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE
Q 018591          203 -----------HSLKGILEG-------HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL  264 (353)
Q Consensus       203 -----------~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  264 (353)
                                 ..-+..++.       .......+++++|+++.+++|+.|+.+++|.+......  .......|..+++
T Consensus       414 ~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~--ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  414 LSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK--EEAKLLEHRAAIT  491 (603)
T ss_pred             cCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc--ceeeeecccCCce
Confidence                       000011111       11222478999999999999999999999999886432  2233456777777


Q ss_pred             EEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          265 CVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       265 ~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ++++  ++.+||+|...+.+.+||+.+.+.  ....+.-|+..|.+++|+|+    ..++|||+.|-.|.||+++.+...
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhh
Confidence            6665  589999999999999999998764  44455669999999999999    999999999999999999987654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-40  Score=271.79  Aligned_cols=290  Identities=19%  Similarity=0.252  Sum_probs=253.0

Q ss_pred             CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEE-Ee-CCEEEEecCCCcE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV-TV-GNKVFTAHQDSRI   78 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~-~~~l~s~~~dg~i   78 (353)
                      .+.+++..+-|..+.|.+++|=   .++||.++..+.+|+++..+..+. .+.+|+..|.++. ++ |.+|++|+.|.++
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv  389 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV  389 (775)
T ss_pred             cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence            5677888889999999999994   589999999999999998887776 8899999999998 44 7799999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~  155 (353)
                      ++|.++.+..... +                           .....+|...|.+++++.   ..|++++.|+++++|++
T Consensus       390 ilWr~~~~~~~~~-~---------------------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l  441 (775)
T KOG0319|consen  390 ILWRLNNNCSKSL-C---------------------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL  441 (775)
T ss_pred             EEEEecCCcchhh-h---------------------------hhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence            9999955442111 1                           112238999999999976   89999999999999999


Q ss_pred             CCcee-----e----eeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591          156 ADLKC-----L----ESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       156 ~~~~~-----~----~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (353)
                      ...+.     +    .....|...|+++++.+  ..+++||.|.+.++|++++..     +..++.+|...+ .++.|+|
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLsGH~RGv-w~V~Fs~  515 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLSGHTRGV-WCVSFSK  515 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-----EEEEeeCCccce-EEEEecc
Confidence            76221     1    12357999999999943  399999999999999999777     899999999987 9999999


Q ss_pred             CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCC
Q 018591          225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                      ..+.+++++.|.+|+||.+.+.    .+..++.+|...|....|  ++..|++++.||-+++|++.+.+   ++.++.+|
T Consensus       516 ~dq~laT~SgD~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e---C~~tlD~H  588 (775)
T KOG0319|consen  516 NDQLLATCSGDKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE---CEMTLDAH  588 (775)
T ss_pred             ccceeEeccCCceEEEEEeccc----eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh---hhhhhhhc
Confidence            9999999999999999999988    889999999999998888  59999999999999999999988   99999999


Q ss_pred             CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +..|++++.+|.    ..+++||+.||.|.+|.=.+.
T Consensus       589 ~DrvWaL~~~~~----~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  589 NDRVWALSVSPL----LDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             cceeEEEeecCc----cceeEecCCCeEEEEeecCcH
Confidence            999999999999    889999999999999964443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.3e-39  Score=244.82  Aligned_cols=287  Identities=18%  Similarity=0.246  Sum_probs=234.4

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      ..+.+|..|+++|.+++.+  .++++||+.|..-.+|+..+++....+.+|...|+++.|+  +.+|++|+.+|.|+||+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            4567899999999999996  7899999999999999999999999999999999999998  99999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      ..++....                                .+...-..|.-+.|+|  ..|++|+.||.+.+|.+.+...
T Consensus       135 ~stg~~~~--------------------------------~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~  182 (399)
T KOG0296|consen  135 VSTGGEQW--------------------------------KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL  182 (399)
T ss_pred             cccCceEE--------------------------------EeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce
Confidence            98876211                                1113445677888998  8899999999999999998888


Q ss_pred             eeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccc---------------------------------
Q 018591          161 LESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSL---------------------------------  205 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------  205 (353)
                      .+.+.+|..++++=.| +++ .++++..||+|++||+.++.+.....                                 
T Consensus       183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~  262 (399)
T KOG0296|consen  183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN  262 (399)
T ss_pred             eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence            8889999999999998 444 89999999999999998876310000                                 


Q ss_pred             -----eeeee--------ccCCc--eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC
Q 018591          206 -----KGILE--------GHKDV--SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG  270 (353)
Q Consensus       206 -----~~~~~--------~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (353)
                           .....        .+...  .|.++.++..-.+.++|+-||+|.|||+.....+     ..-.|...|+.+.|.+
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R-----~~c~he~~V~~l~w~~  337 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR-----HICEHEDGVTKLKWLN  337 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-----eeccCCCceEEEEEcC
Confidence                 00000        00011  1122233334456789999999999999887322     2334677799999986


Q ss_pred             -cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          271 -EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       271 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                       .+|++++.+|.|+.||.++++   ++..+.||...|.+++++|+    .++++|+|.|++.+||+++
T Consensus       338 t~~l~t~c~~g~v~~wDaRtG~---l~~~y~GH~~~Il~f~ls~~----~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  338 TDYLLTACANGKVRQWDARTGQ---LKFTYTGHQMGILDFALSPQ----KRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cchheeeccCceEEeeeccccc---eEEEEecCchheeEEEEcCC----CcEEEEecCCCeEEEEecC
Confidence             899999999999999999998   88889999999999999999    9999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-40  Score=272.65  Aligned_cols=274  Identities=22%  Similarity=0.309  Sum_probs=222.2

Q ss_pred             EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591           51 KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA  128 (353)
Q Consensus        51 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (353)
                      ++......++|..|+  +..+|.|..|..|++|.+...+....+-...+........... ....-.......+.+.+|.
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~-~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVD-VDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchh-hhhccccCCceeEEeecCC
Confidence            333345567788787  6678888888899999887543211111111111100000000 0111112233445578999


Q ss_pred             CceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCccccc
Q 018591          129 DSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHS  204 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~  204 (353)
                      ++|....|+|  ++|++++.|+++++|.+.+..++-.+++|..+|+.+.|.|.  ++++++.|++.++|......     
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-----  526 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-----  526 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-----
Confidence            9999999999  89999999999999999999999999999999999999554  99999999999999998877     


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeE
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSI  282 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i  282 (353)
                      +.+.+.+|...+ .|+.|+|+..++++|+.|.++++||..++    .....+.+|..+|.++.++  |++|++|+.||.|
T Consensus       527 PlRifaghlsDV-~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  527 PLRIFAGHLSDV-DCVSFHPNSNYVATGSSDRTVRLWDVSTG----NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             chhhhccccccc-ceEEECCcccccccCCCCceEEEEEcCCC----cEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence            889999999887 99999999999999999999999999999    5677789999999888765  9999999999999


Q ss_pred             EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      .+||+.+++   .+..+.+|++.|.++.|+.+    |..||+|+.|.+|++||+......
T Consensus       602 ~iWDl~~~~---~v~~l~~Ht~ti~SlsFS~d----g~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  602 KIWDLANGS---LVKQLKGHTGTIYSLSFSRD----GNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             EEEEcCCCc---chhhhhcccCceeEEEEecC----CCEEEecCCCCeEEEEEchhhccc
Confidence            999999988   78889999999999999999    999999999999999999876554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-39  Score=252.03  Aligned_cols=270  Identities=20%  Similarity=0.273  Sum_probs=239.2

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      ..|++++|+  |.+||+|+.||.+++|+. +|.++.++..|.++|.++.|+  |++|++++.||++.+||..++..    
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~----  310 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV----  310 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE----
Confidence            579999997  999999999999999995 788899999999999999999  89999999999999999987762    


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV  171 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  171 (353)
                       .                           +.+.-|..+-..+.|-. +.+++++.|+.|+++.+....++.++.+|.++|
T Consensus       311 -~---------------------------q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V  362 (524)
T KOG0273|consen  311 -K---------------------------QQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV  362 (524)
T ss_pred             -E---------------------------EeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence             1                           12224666667788887 899999999999999999999999999999999


Q ss_pred             EEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC---------CeEEeecCCCcEEE
Q 018591          172 NGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG---------KWVYGGGSDGFVMG  240 (353)
Q Consensus       172 ~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i  240 (353)
                      .++.|+  ..+|++++.|++++||......     ....+..|...+ ..+.|+|.+         ..+++++.|++|++
T Consensus       363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~~l~~Hskei-~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l  436 (524)
T KOG0273|consen  363 NALKWNPTGSLLASCSDDGTLKIWSMGQSN-----SVHDLQAHSKEI-YTIKWSPTGPVTSNPNMNLMLASASFDSTVKL  436 (524)
T ss_pred             EEEEECCCCceEEEecCCCeeEeeecCCCc-----chhhhhhhccce-eeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence            999995  4499999999999999988877     778889998887 889999864         46899999999999


Q ss_pred             eeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591          241 WEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG  318 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  318 (353)
                      ||+..+    .+...+..|..+|.+++++  |+++|+|+.||.|.+|+.++++   .++.+.+ .+.|..++|+.+    
T Consensus       437 wdv~~g----v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~---l~~s~~~-~~~Ifel~Wn~~----  504 (524)
T KOG0273|consen  437 WDVESG----VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK---LVKSYQG-TGGIFELCWNAA----  504 (524)
T ss_pred             EEccCC----ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh---eeEeecC-CCeEEEEEEcCC----
Confidence            999999    6778888999999998886  9999999999999999999988   5555554 556999999999    


Q ss_pred             CeEEEEccCCCeEEEEEcC
Q 018591          319 GFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       319 ~~~l~s~~~dg~i~iw~~~  337 (353)
                      |..|..+-.||.+++-|+.
T Consensus       505 G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  505 GDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCEEEEEecCCCceEEEec
Confidence            8999999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-38  Score=259.95  Aligned_cols=325  Identities=19%  Similarity=0.296  Sum_probs=256.0

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCcee--eEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRM--FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      ..+.+++.||.+.|+++.|+  .++|++|+.|-++++|+++..+-  ...+.+|...|.+..|.  ...+++.+.||.+.
T Consensus       135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~  214 (893)
T KOG0291|consen  135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALF  214 (893)
T ss_pred             ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEE
Confidence            45667889999999999995  78999999999999999887665  56678999999999887  66799999999999


Q ss_pred             EEEcccCc----------------------cc-----eeEEe--ecccc-------------------------------
Q 018591           80 VWKVSRSS----------------------EN-----VFRLV--DTLPT-------------------------------   99 (353)
Q Consensus        80 ~w~~~~~~----------------------~~-----~~~~~--~~~~~-------------------------------   99 (353)
                      +|..+...                      +.     .+...  ..+..                               
T Consensus       215 ~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel  294 (893)
T KOG0291|consen  215 VWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL  294 (893)
T ss_pred             EEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEec
Confidence            99887110                      00     00000  00000                               


Q ss_pred             -----------ccceee--eecccceeEeecccc---eeee-----------eecCCceEEEEEeC--CeEEEecCCCcE
Q 018591          100 -----------TKDYLG--KFMKQSNYVQTRRHH---KRLW-----------IEHADSISCLTVYN--GLIYSGSWDKTL  150 (353)
Q Consensus       100 -----------~~~~~~--~~~~~~~~~~~~~~~---~~~~-----------~~~~~~i~~~~~~~--~~l~~~~~dg~v  150 (353)
                                 ....+.  .+...++.+..+...   ..+|           .+|...+++++++|  +++++|+.||.|
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV  374 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV  374 (893)
T ss_pred             CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence                       000000  000001122221111   1111           38999999999999  699999999999


Q ss_pred             EEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          151 KVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      ++||..++-|..+|..|...|+.+.|  .++.+++++.||+|+.||+...+     ..+++.........+++..|.|..
T Consensus       375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-----NfRTft~P~p~QfscvavD~sGel  449 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-----NFRTFTSPEPIQFSCVAVDPSGEL  449 (893)
T ss_pred             EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-----eeeeecCCCceeeeEEEEcCCCCE
Confidence            99999999999999999999999999  66699999999999999999887     677777777766689999999999


Q ss_pred             EEeecCCC-cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcC
Q 018591          229 VYGGGSDG-FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP  305 (353)
Q Consensus       229 l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~  305 (353)
                      +++|+.|. .|.+|+++++    ++...+.+|+++|.++++  ++..|++|+.|.+|++||+-....  .+.+ -.+...
T Consensus       450 V~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--~vEt-l~i~sd  522 (893)
T KOG0291|consen  450 VCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--TVET-LEIRSD  522 (893)
T ss_pred             EEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc--eeee-Eeeccc
Confidence            99999887 7999999999    788899999999997555  599999999999999999876532  1222 236678


Q ss_pred             eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +.+++|.|+    |+.|++++.||.|.+||++...++..++
T Consensus       523 vl~vsfrPd----G~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  523 VLAVSFRPD----GKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             eeEEEEcCC----CCeEEEEEecceEEEEEhhhceeecccc
Confidence            999999999    9999999999999999999887776554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4e-39  Score=270.48  Aligned_cols=285  Identities=25%  Similarity=0.465  Sum_probs=242.5

Q ss_pred             eeeeeeCc-cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            8 SLAVLSGH-VGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         8 ~~~~l~~h-~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      ....+.+| ...|.++.|+  |+++++++.|+.+++|+...++  ....+.+|...|..++|+  +.++++++.|++|++
T Consensus       150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri  229 (456)
T KOG0266|consen  150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI  229 (456)
T ss_pred             eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence            34555555 7899999996  8999999999999999998887  777888999999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||+....                               ...+.+.+|...|++++|+|  +++++|+.|++|++||++++
T Consensus       230 wd~~~~~-------------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  230 WDLKDDG-------------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             eeccCCC-------------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence            9994432                               12344458999999999999  79999999999999999999


Q ss_pred             eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-eeeEEEEcCCCCeEEeecCC
Q 018591          159 KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-SLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d  235 (353)
                      +++..+.+|...|++++|  .+..+++++.|+.|++||+.++...   +...+..+... +++.+.|+|++.++++++.|
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence            999999999999999999  3448999999999999999988621   23455666555 67999999999999999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEE-----EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCC-CcCeEEE
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH-EGPVKCL  309 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~  309 (353)
                      +.+++||+...    .......+|...+.|+     ...+.++++|+.|+.|++|++.++.   .+..+.+| ...+..+
T Consensus       356 ~~~~~w~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---~~~~l~~h~~~~~~~~  428 (456)
T KOG0266|consen  356 RTLKLWDLRSG----KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---ILQRLEGHSKAAVSDL  428 (456)
T ss_pred             CeEEEEEccCC----cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc---hhhhhcCCCCCceecc
Confidence            99999999987    4555555665543333     2248899999999999999999876   67778899 8999999


Q ss_pred             EeecCCCCCCeEEEEcc--CCCeEEEEEcC
Q 018591          310 QASPNAVGGGFLLYSGS--LDKSLRVWWVS  337 (353)
Q Consensus       310 ~~~~~~~~~~~~l~s~~--~dg~i~iw~~~  337 (353)
                      .++|.    ..++++++  .|+.+++|..+
T Consensus       429 ~~~~~----~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  429 SSHPT----ENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccCCC----cCeeeecCcCCCceEEEecCC
Confidence            99999    89999998  79999999764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3e-38  Score=254.19  Aligned_cols=278  Identities=33%  Similarity=0.527  Sum_probs=235.3

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~   84 (353)
                      ++++++|.++|++++|+  +++|++++.||.|++|++.+++....+..|...+..+.|.  ++.+++++.||.|++|+++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            46788999999999997  6899999999999999999998888888999999889887  5689999999999999998


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      .+.     .                           ...+..|...+.++.|++  .++++++.|+.|.+||+++++...
T Consensus        82 ~~~-----~---------------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  129 (289)
T cd00200          82 TGE-----C---------------------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT  129 (289)
T ss_pred             ccc-----c---------------------------eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence            753     1                           122236788999999999  677777779999999999899999


Q ss_pred             eccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591          163 SIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG  240 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  240 (353)
                      .+..|...+.++.+.+ + ++++++.++.|++||++..+     ....+..+...+ .++.|+|+++.+++++.++.+++
T Consensus       130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i  203 (289)
T cd00200         130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-----CVATLTGHTGEV-NSVAFSPDGEKLLSSSSDGTIKL  203 (289)
T ss_pred             EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-----cceeEecCcccc-ceEEECCCcCEEEEecCCCcEEE
Confidence            8888999999999944 3 66666669999999998776     556666666555 99999999999999999999999


Q ss_pred             eeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591          241 WEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG  318 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  318 (353)
                      ||++..    .....+..|...+.++.++  +.++++++.||.|++|++.+++   .+..+.+|...|.+++|+|+    
T Consensus       204 ~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~----  272 (289)
T cd00200         204 WDLSTG----KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---CVQTLSGHTNSVTSLAWSPD----  272 (289)
T ss_pred             EECCCC----ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce---eEEEccccCCcEEEEEECCC----
Confidence            999876    4445555667778777775  5788888889999999998766   55556689999999999999    


Q ss_pred             CeEEEEccCCCeEEEEE
Q 018591          319 GFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       319 ~~~l~s~~~dg~i~iw~  335 (353)
                      +.+|++++.||.|++|+
T Consensus       273 ~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         273 GKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCEEEEecCCCeEEecC
Confidence            89999999999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-39  Score=232.23  Aligned_cols=256  Identities=20%  Similarity=0.245  Sum_probs=212.3

Q ss_pred             ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR  122 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (353)
                      .....++++|++.|.+++..   .+.+++++.|.++.+|++.....                           ....+.+
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~---------------------------~~G~~~r   57 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI---------------------------KYGVPVR   57 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc---------------------------ccCceee
Confidence            34566789999999999987   67899999999999999976531                           1123456


Q ss_pred             eeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCC
Q 018591          123 LWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       123 ~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~  198 (353)
                      .+.||...|..+..++  ++.++++.|+.+++||+.+++..+.|.+|...|.++++++  ..+++|+.|.+|++||....
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence            6779999999999998  8999999999999999999999999999999999999943  39999999999999999876


Q ss_pred             CcccccceeeeeccC-CceeeEEEEcCC--CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEE
Q 018591          199 KSHCHSLKGILEGHK-DVSLNSVVVSDD--GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFL  273 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l  273 (353)
                      .      ......+. ...|.++.|+|+  ..+|++++.|++|++||+++-    +....+.+|...+..+  +|||.+.
T Consensus       138 c------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslc  207 (315)
T KOG0279|consen  138 C------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLC  207 (315)
T ss_pred             E------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEE
Confidence            4      33333332 444599999998  689999999999999999987    6667777888777655  5579999


Q ss_pred             EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      ++|+.||.+.+||++.++   .+..+ +|...|.+++|+|+    ...| .+..+..|+|||++++..+.++..
T Consensus       208 asGgkdg~~~LwdL~~~k---~lysl-~a~~~v~sl~fspn----rywL-~~at~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  208 ASGGKDGEAMLWDLNEGK---NLYSL-EAFDIVNSLCFSPN----RYWL-CAATATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             ecCCCCceEEEEEccCCc---eeEec-cCCCeEeeEEecCC----ceeE-eeccCCceEEEeccchhhhhhccc
Confidence            999999999999999988   44443 57889999999997    4444 444566799999999988877654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.1e-39  Score=243.95  Aligned_cols=279  Identities=27%  Similarity=0.379  Sum_probs=236.2

Q ss_pred             ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-----CCEEEEecCCCcEEEEEcccCccc
Q 018591           15 HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSRSSEN   89 (353)
Q Consensus        15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~~~~~   89 (353)
                      |.+.|.++...++.+++|+.||.+++||. .|+....+.+|.++|.++++.     ...+++++.|.++++|.++.++..
T Consensus       104 hdDWVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~  182 (423)
T KOG0313|consen  104 HDDWVSSVKGASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK  182 (423)
T ss_pred             chhhhhhhcccCceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence            88999999888999999999999999995 789999999999999988885     345999999999999999877521


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC----------
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD----------  157 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~----------  157 (353)
                      .. .                           ...-.||...|-++...+  ..+++|+.|..|.+|+..+          
T Consensus       183 ~~-~---------------------------~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  183 VK-A---------------------------LKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             hh-H---------------------------HhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence            10 0                           011128999999999887  8999999999999999321          


Q ss_pred             ---------------ceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591          158 ---------------LKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       158 ---------------~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (353)
                                     +.++..+.+|..+|.++.| +...+++++.|.+|+.||+.++.     ....+.....  .+++.
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~-----~~~~~~~~ks--l~~i~  307 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG-----LKSTLTTNKS--LNCIS  307 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc-----ceeeeecCcc--eeEee
Confidence                           2355667899999999999 55699999999999999999987     5555544433  59999


Q ss_pred             EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEecc
Q 018591          222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGA  298 (353)
Q Consensus       222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  298 (353)
                      .+|..++|++|+.|..+++||.+++. .......+.+|...|.++.++   ..+|++|+.|+++++||+++.+.  ++..
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--plyd  384 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYD  384 (423)
T ss_pred             cccccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--ccee
Confidence            99999999999999999999999874 334567788999999999886   56899999999999999998664  5777


Q ss_pred             ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +.+|...|.++.|..     +.++++||.|.+|+|+.-.
T Consensus       385 I~~h~DKvl~vdW~~-----~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  385 IAGHNDKVLSVDWNE-----GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eccCCceEEEEeccC-----CceEEeccCcceEEEeccc
Confidence            899999999999996     6799999999999999754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.2e-38  Score=224.56  Aligned_cols=269  Identities=17%  Similarity=0.287  Sum_probs=226.7

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      ..+|++.++++...+.|+.+...  +++||+|+. -.||+||+.++.  ++.++++|+..|.++.|.  |+.+++|++||
T Consensus        27 a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg  105 (311)
T KOG0315|consen   27 ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG  105 (311)
T ss_pred             hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence            46899999999888999999994  777887776 589999998765  688999999999999997  99999999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      +++|||++...     +.+.                            ..|..+|+++..+|  ..|++|..+|.|++||
T Consensus       106 t~kIWdlR~~~-----~qR~----------------------------~~~~spVn~vvlhpnQteLis~dqsg~irvWD  152 (311)
T KOG0315|consen  106 TVKIWDLRSLS-----CQRN----------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWD  152 (311)
T ss_pred             eEEEEeccCcc-----cchh----------------------------ccCCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence            99999998754     1111                            16789999999999  8899999999999999


Q ss_pred             cCCceeeeec-cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCc-ccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          155 VADLKCLESI-KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKS-HCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       155 ~~~~~~~~~~-~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      +.+..+...+ .....+|.++..  ++.+++++...|..++|++-.... ....+...++.|...+ ..+.+||++++|+
T Consensus       153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i-l~C~lSPd~k~la  231 (311)
T KOG0315|consen  153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI-LRCLLSPDVKYLA  231 (311)
T ss_pred             ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE-EEEEECCCCcEEE
Confidence            9988776665 334568888888  334888999999999999876542 2344566788898887 9999999999999


Q ss_pred             eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591          231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC  308 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~  308 (353)
                      +++.|.+++||+.+..   ++....+.+|...+....|+  +.||++|+.|+.+++|++..++   .++...+|-.+..+
T Consensus       232 t~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k---~v~qy~gh~K~~vc  305 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK---EVRQYQGHHKAAVC  305 (311)
T ss_pred             eecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc---eeeecCCcccccEE
Confidence            9999999999999876   45666778898888877775  8999999999999999999988   77788999888887


Q ss_pred             EEee
Q 018591          309 LQAS  312 (353)
Q Consensus       309 ~~~~  312 (353)
                      ++..
T Consensus       306 ~~ln  309 (311)
T KOG0315|consen  306 VALN  309 (311)
T ss_pred             EEee
Confidence            7654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=266.24  Aligned_cols=284  Identities=27%  Similarity=0.407  Sum_probs=256.9

Q ss_pred             eeeC-ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEE-eccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           11 VLSG-HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTK-FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        11 ~l~~-h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      .+.+ |...+.+..|+++++++++.|++|++||..++..+.. +.+|.+.|.++++.  ++++++|+.|.++++||..++
T Consensus       202 ~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  202 VLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             eecccCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence            3443 6778899999999999999999999999999999888 99999999999999  999999999999999999888


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                      .     +.                           ..+.+|...|.++...+..+++|+.|.+|++|++.++.++..+.+
T Consensus       282 ~-----C~---------------------------~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~  329 (537)
T KOG0274|consen  282 E-----CT---------------------------HSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG  329 (537)
T ss_pred             c-----EE---------------------------EEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecc
Confidence            7     33                           334489999999999999999999999999999999999999999


Q ss_pred             cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          167 HDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       167 ~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      |.++|.++....+.+++|+.|++|++||+.+.+     ++..+.+|...+ .++.+.+. ..+++|+.|+.|++||+++.
T Consensus       330 h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~-----cl~sl~gH~~~V-~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~  402 (537)
T KOG0274|consen  330 HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK-----CLKSLSGHTGRV-YSLIVDSE-NRLLSGSLDTTIKVWDLRTK  402 (537)
T ss_pred             ccccEEEEEecCCEEEEEecCceEEEEEhhhce-----eeeeecCCcceE-EEEEecCc-ceEEeeeeccceEeecCCch
Confidence            999999999999999999999999999999888     999999999887 89988775 79999999999999999987


Q ss_pred             ccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC-CCcCeEEEEeecCCCCCCeEEEEc
Q 018591          247 IVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      .   ++...+.+|...+..+...+++|++++.|++|++||..+++   ++..+.+ |.+.|+++++..      ..++++
T Consensus       403 ~---~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~---~~~~~~~~~~~~v~~l~~~~------~~il~s  470 (537)
T KOG0274|consen  403 R---KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE---CLRTLEGRHVGGVSALALGK------EEILCS  470 (537)
T ss_pred             h---hhhhhhcCCcccccccccccceeEeccccccEEEeecccCc---eeeeeccCCcccEEEeecCc------ceEEEE
Confidence            4   57778889999999999999999999999999999999988   6777777 678899998872      478889


Q ss_pred             cCCCeEEEEEcCCCCCcccc
Q 018591          326 SLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       326 ~~dg~i~iw~~~~~~~~~~~  345 (353)
                      +.||++++||+++++.....
T Consensus       471 ~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  471 SDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ecCCeeEEEecccCchhhhh
Confidence            99999999999999877644

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.7e-39  Score=244.85  Aligned_cols=283  Identities=22%  Similarity=0.347  Sum_probs=230.4

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC---ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD---LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      ..+.|..|++.|+-+.|+  |++||||+.|.+..+|++..   .+...++.+|..+|..+.|+  .++|++++.|..+++
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            356788999999999996  99999999999999998643   34578889999999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||+.++.     +....+.                          ++...+.+.+|.|  ..+++|+.|+.+..||++ +
T Consensus       296 wDv~tgd-----~~~~y~~--------------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-g  343 (519)
T KOG0293|consen  296 WDVDTGD-----LRHLYPS--------------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-G  343 (519)
T ss_pred             ccCCcch-----hhhhccc--------------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-c
Confidence            9999987     3333322                          4567899999999  789999999999999985 4


Q ss_pred             eeeeecccc-CcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591          159 KCLESIKAH-DDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       159 ~~~~~~~~~-~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ......++- ...|.+++.  .+..+++.+.|..|++++.++..     .......+.  +++++..|.+++++++.-.+
T Consensus       344 n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-----dr~lise~~--~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  344 NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-----DRGLISEEQ--PITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh-----hhccccccC--ceeEEEEcCCCcEEEEEccc
Confidence            555555543 356888988  33488888899999999988764     222333332  35999999999999999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeE----EEEEE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAV----LCVCL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v----~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~  310 (353)
                      ..+++||++..    +.+....+|...-    .|+.- +..++++|++|+.|+||+..+++   ++..+.||...|++++
T Consensus       417 qei~LWDl~e~----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  417 QEIHLWDLEEN----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVS  489 (519)
T ss_pred             CeeEEeecchh----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEe
Confidence            99999999976    5555556655432    23322 35799999999999999999988   8889999999999999


Q ss_pred             eecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      |+|.+   -.++|+||+||+||||.....
T Consensus       490 wNP~~---p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  490 WNPAD---PEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCCC---HHHhhccCCCCeEEEecCCcc
Confidence            99984   579999999999999987754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-39  Score=232.56  Aligned_cols=281  Identities=22%  Similarity=0.346  Sum_probs=236.3

Q ss_pred             eeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591           10 AVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      .+-.||+.+|..++|+     |-+|++++.||.-.+-+-++|.-+.+|.+|.+.|+....+  ...-++++.|-+-++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            4678999999999996     7799999999999999999999999999999999999888  45677889999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK-  159 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-  159 (353)
                      .-++.     .+..+                            .|..-|.+++|+.  ++|++|+.+..++++|++..+ 
T Consensus        88 a~tgd-----elhsf----------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A  134 (334)
T KOG0278|consen   88 AVTGD-----ELHSF----------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA  134 (334)
T ss_pred             hhhhh-----hhhhh----------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC
Confidence            98876     33333                            6888999999998  899999999999999998754 


Q ss_pred             eeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          160 CLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      +..++.+|.+.|..+.|  .+..+++++.|++||+||.+++.     ..+.+....  .|+++.++++|+++.++. .+.
T Consensus       135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----~v~sL~~~s--~VtSlEvs~dG~ilTia~-gss  206 (334)
T KOG0278|consen  135 PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----EVQSLEFNS--PVTSLEVSQDGRILTIAY-GSS  206 (334)
T ss_pred             CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----EEEEEecCC--CCcceeeccCCCEEEEec-Cce
Confidence            56788999999999999  66688999999999999999997     555555443  359999999998776664 556


Q ss_pred             EEEeeccccccceeeeeecc-ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc-cCCCcCeEEEEeecCC
Q 018591          238 VMGWEGNVEIVRWKLACETK-AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI-TGHEGPVKCLQASPNA  315 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~  315 (353)
                      |..||..+-.    +..... .......++.|+...+++|+.|..++.||..+++   .+..+ ++|-++|.|+.|+|+ 
T Consensus       207 V~Fwdaksf~----~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge---Ei~~~nkgh~gpVhcVrFSPd-  278 (334)
T KOG0278|consen  207 VKFWDAKSFG----LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE---EIGSYNKGHFGPVHCVRFSPD-  278 (334)
T ss_pred             eEEecccccc----ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCc---eeeecccCCCCceEEEEECCC-
Confidence            9999998752    222222 2233455677788899999999999999999998   44444 899999999999999 


Q ss_pred             CCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          316 VGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                         |...++||+||+|++|....++..
T Consensus       279 ---GE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  279 ---GELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ---CceeeccCCCceEEEEEecCCCch
Confidence               999999999999999998766543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.7e-38  Score=259.15  Aligned_cols=264  Identities=19%  Similarity=0.315  Sum_probs=224.7

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc-------------------------------eeeEEeccC
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL-------------------------------RMFTKFGHG   55 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~-------------------------------~~~~~~~~~   55 (353)
                      ..++..-...++|..|+  +.+||.|-.|..|++|.+...                               ....++-+|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            34444445689999996  779999999999999997631                               123456789


Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      .++|....|+  .++|++++.|+++|+|.+++..                                ....+.+|..+|.+
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s--------------------------------~~V~y~GH~~PVwd  498 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS--------------------------------CLVIYKGHLAPVWD  498 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeecccce--------------------------------eEEEecCCCcceee
Confidence            9999999998  7899999999999999998876                                23444599999999


Q ss_pred             EEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591          134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  209 (353)
                      +.|+|  -++++++.|++.++|.....++++.+.+|-+.|.|+.|+|+  ++++||.|.++|+||..++.     ..+.+
T Consensus       499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF  573 (707)
T KOG0263|consen  499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIF  573 (707)
T ss_pred             EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEe
Confidence            99999  79999999999999999999999999999999999999555  99999999999999999998     78999


Q ss_pred             eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~  287 (353)
                      .+|...+ .+++|+|+|++|++|+.||.|.+||+..+    .+...+.+|.+.+.+++++  |..||+|+.|++|++||+
T Consensus       574 ~GH~~~V-~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  574 TGHKGPV-TALAFSPCGRYLASGDEDGLIKIWDLANG----SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             cCCCCce-EEEEEcCCCceEeecccCCcEEEEEcCCC----cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            9999887 99999999999999999999999999998    7788888999999888775  999999999999999998


Q ss_pred             CCCcce---------------------EEeccccCCCcCeEEEEeecC
Q 018591          288 EAFGKL---------------------CRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       288 ~~~~~~---------------------~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ......                     ..+..+.....+|..+.|.-.
T Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr  696 (707)
T KOG0263|consen  649 TKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRR  696 (707)
T ss_pred             hhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence            643211                     123334444557777777765

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.3e-37  Score=225.38  Aligned_cols=252  Identities=17%  Similarity=0.243  Sum_probs=217.6

Q ss_pred             eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      ..+++++|.+.|.++.|.  .+++++++.||.+.|||.-+..     ....+|                           
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-----K~haip---------------------------   94 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-----KVHAIP---------------------------   94 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-----ceeEEe---------------------------
Confidence            347889999999999998  7899999999999999987765     222221                           


Q ss_pred             ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------eeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCC
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------KCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~  196 (353)
                      -....|...+|+|  +.+++|+.|+...||++.+.      ...+++.+|.+.+.|+.| +++.|++++.|.+..+||++
T Consensus        95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie  174 (343)
T KOG0286|consen   95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE  174 (343)
T ss_pred             cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc
Confidence            4567899999999  89999999999999999754      345678999999999999 77799999999999999999


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFL  273 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l  273 (353)
                      +++     ....+.+|.+.+ .++.++| +++.+++|+-|+..++||++.+    ...+.+.+|...|.++.|  +|.-+
T Consensus       175 ~g~-----~~~~f~GH~gDV-~slsl~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~af  244 (343)
T KOG0286|consen  175 TGQ-----QTQVFHGHTGDV-MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAF  244 (343)
T ss_pred             cce-----EEEEecCCcccE-EEEecCCCCCCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCee
Confidence            998     888999999987 9999999 8999999999999999999998    788889999988877665  69999


Q ss_pred             EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ++|+.|++.|+||++...++.. .....-..+|++++||..    |++|+.|..|.++.+||.-+++....+.
T Consensus       245 atGSDD~tcRlyDlRaD~~~a~-ys~~~~~~gitSv~FS~S----GRlLfagy~d~~c~vWDtlk~e~vg~L~  312 (343)
T KOG0286|consen  245 ATGSDDATCRLYDLRADQELAV-YSHDSIICGITSVAFSKS----GRLLFAGYDDFTCNVWDTLKGERVGVLA  312 (343)
T ss_pred             eecCCCceeEEEeecCCcEEee-eccCcccCCceeEEEccc----ccEEEeeecCCceeEeeccccceEEEee
Confidence            9999999999999998774322 222334568999999999    9999999999999999998887766544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-36  Score=248.37  Aligned_cols=330  Identities=23%  Similarity=0.304  Sum_probs=250.4

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      .+....-+|.||..+|+++.|+  |..|+|||.|+.|.+||+-...-...+.+|...|+.+.|.  .+.+++.+.|+.|+
T Consensus        95 ~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK  174 (888)
T KOG0306|consen   95 ESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIK  174 (888)
T ss_pred             CCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEE
Confidence            3456778999999999999997  9999999999999999998888889999999999998887  67899999999999


Q ss_pred             EEEcccCcccee----------------EEee----------cc--ccc-------------------------------
Q 018591           80 VWKVSRSSENVF----------------RLVD----------TL--PTT-------------------------------  100 (353)
Q Consensus        80 ~w~~~~~~~~~~----------------~~~~----------~~--~~~-------------------------------  100 (353)
                      +||+++......                .++.          .+  +..                               
T Consensus       175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~  254 (888)
T KOG0306|consen  175 FWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF  254 (888)
T ss_pred             EEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence            999987641000                0000          00  000                               


Q ss_pred             cceeeeeccc------------------------------c------e-------------------------eEeeccc
Q 018591          101 KDYLGKFMKQ------------------------------S------N-------------------------YVQTRRH  119 (353)
Q Consensus       101 ~~~~~~~~~~------------------------------~------~-------------------------~~~~~~~  119 (353)
                      ...+..+...                              .      +                         .......
T Consensus       255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~  334 (888)
T KOG0306|consen  255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT  334 (888)
T ss_pred             cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence            0000000000                              0      0                         0000000


Q ss_pred             c------------------------------eeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeec----
Q 018591          120 H------------------------------KRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESI----  164 (353)
Q Consensus       120 ~------------------------------~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~----  164 (353)
                      +                              .-.+.+|...|.+++++. +.++..+..+.+++|+..+.++++++    
T Consensus       335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y  414 (888)
T KOG0306|consen  335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGY  414 (888)
T ss_pred             ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecccc
Confidence            0                              011238889999999998 55555556788999998877776664    


Q ss_pred             ------------------------------------cccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCccc----
Q 018591          165 ------------------------------------KAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHC----  202 (353)
Q Consensus       165 ------------------------------------~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~----  202 (353)
                                                          ++|.+.|++++. +++ .+++|+.|.+|++||..-....+    
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~  494 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK  494 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence                                                368999999999 333 89999999999999975322100    


Q ss_pred             --ccc--eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEe
Q 018591          203 --HSL--KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSG  276 (353)
Q Consensus       203 --~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~  276 (353)
                        ..+  .+.++-. + .|.++.+|||+++|+++--|.++++|-+.+-    ++...+.+|.-+|.|+.  |+++++++|
T Consensus       495 k~lsl~~~rtLel~-d-dvL~v~~Spdgk~LaVsLLdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTg  568 (888)
T KOG0306|consen  495 KVLSLKHTRTLELE-D-DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTG  568 (888)
T ss_pred             eeeeeccceEEecc-c-cEEEEEEcCCCcEEEEEeccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEec
Confidence              001  1122222 2 2599999999999999999999999999987    78889999999998875  569999999


Q ss_pred             cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +.|.+|++|-++-|.   +-..+.+|...|.++.|.|.    ...+.++|.|+.|+-||-.+-+.++...
T Consensus       569 SADKnVKiWGLdFGD---CHKS~fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~  631 (888)
T KOG0306|consen  569 SADKNVKIWGLDFGD---CHKSFFAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLD  631 (888)
T ss_pred             cCCCceEEeccccch---hhhhhhcccCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeec
Confidence            999999999999888   88899999999999999998    8999999999999999998888777665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-37  Score=246.47  Aligned_cols=283  Identities=21%  Similarity=0.302  Sum_probs=244.8

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~   84 (353)
                      .+++..|++.|.++.++  ...++++-.+|.|.|||.++...++.+....-+|.+..|-  .+.+++|+.|..|++++.+
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            34566799999999998  6799999999999999999999999999999999999887  7899999999999999999


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-ceee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-LKCL  161 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-~~~~  161 (353)
                      +.+     .                           ...+..|...|.|++.+|  .++++++.|-.|++||.+. ..+.
T Consensus        86 t~e-----k---------------------------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~  133 (794)
T KOG0276|consen   86 TGE-----K---------------------------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE  133 (794)
T ss_pred             cce-----e---------------------------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee
Confidence            887     2                           344558999999999999  8999999999999999975 5788


Q ss_pred             eeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC--CeEEeecCCC
Q 018591          162 ESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG--KWVYGGGSDG  236 (353)
Q Consensus       162 ~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg  236 (353)
                      +++++|...|.+++|+|   +.+++++.|++|++|.+.+..     +..++++|...+ +++.+-+.|  .+|++|+.|.
T Consensus       134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-----~nfTl~gHekGV-N~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-----PNFTLEGHEKGV-NCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----CceeeeccccCc-ceEEeccCCCcceEEecCCCc
Confidence            99999999999999933   499999999999999999887     788999999987 999998744  6999999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .+++||.++.    .++.++.+|...|.++.|.  -.++++|+.||+++||+..+.+   ....+.-.-+.|++++-.+.
T Consensus       208 tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~---lE~tLn~gleRvW~I~~~k~  280 (794)
T KOG0276|consen  208 TIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK---LEKTLNYGLERVWCIAAHKG  280 (794)
T ss_pred             eEEEeecchH----HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---hhhhhhcCCceEEEEeecCC
Confidence            9999999998    7888999999998888886  4589999999999999988766   44445555678999998887


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                          +..++.|.+.|.|. .++....+
T Consensus       281 ----~~~i~vG~Deg~i~-v~lgreeP  302 (794)
T KOG0276|consen  281 ----DGKIAVGFDEGSVT-VKLGREEP  302 (794)
T ss_pred             ----CCeEEEeccCCcEE-EEccCCCC
Confidence                67788888777653 34444333

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.7e-36  Score=269.64  Aligned_cols=281  Identities=17%  Similarity=0.211  Sum_probs=220.4

Q ss_pred             eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc----e----eeEEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591           12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL----R----MFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRI   78 (353)
Q Consensus        12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~----~----~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i   78 (353)
                      +.+|.+.|++++|+  +++||+|+.|+.|+|||..+.    .    ....+.+ ...+.+++|+   +.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeE
Confidence            44599999999996  899999999999999997532    1    1223333 4578889986   6789999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~  155 (353)
                      ++||+.++.     .+                           ..+.+|...|++++|++   .+|++|+.||.|++||+
T Consensus       558 ~lWd~~~~~-----~~---------------------------~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        558 QVWDVARSQ-----LV---------------------------TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             EEEECCCCe-----EE---------------------------EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence            999998764     22                           22237999999999986   68999999999999999


Q ss_pred             CCceeeeeccccCcceEEEEE-e--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591          156 ADLKCLESIKAHDDAVNGLVA-S--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~i~~-~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  232 (353)
                      +++..+..+..+ ..+.++.| +  +..+++|+.||.|++||+++.+    .....+.+|...+ .++.|. ++.+++++
T Consensus       606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~~~~~h~~~V-~~v~f~-~~~~lvs~  678 (793)
T PLN00181        606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLCTMIGHSKTV-SYVRFV-DSSTLVSS  678 (793)
T ss_pred             CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccceEecCCCCCE-EEEEEe-CCCEEEEE
Confidence            999888888654 67899998 3  3489999999999999998764    1345566777765 999997 67899999


Q ss_pred             cCCCcEEEeecccccc--ceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCcceEE--------e--cc
Q 018591          233 GSDGFVMGWEGNVEIV--RWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFGKLCR--------V--GA  298 (353)
Q Consensus       233 ~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~--~~  298 (353)
                      +.|+.|++||+.....  .......+.+|...+.++.  +++.+|++|+.|+.|++|+.........        +  ..
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~  758 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE  758 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence            9999999999975321  1234556677777665554  4589999999999999999765432110        0  01


Q ss_pred             ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      ...|...|.+++|+|+    +..|++|+.||.|+||++
T Consensus       759 ~~~~~~~V~~v~ws~~----~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        759 VDDASQFISSVCWRGQ----SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCcEEEEEEEcCC----CCeEEEecCCCcEEEEec
Confidence            2345667999999999    999999999999999986

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-36  Score=245.27  Aligned_cols=300  Identities=15%  Similarity=0.247  Sum_probs=244.2

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCC-CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQG-KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      ++...+++.|.--..+|..++|+  |+.||.|+.. |.+-||++++...+....+|...+.+++++  |+++++|+.||.
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence            46677888888878899999998  9999998875 899999999999999999999999999998  789999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      |++||...+-     +..+                           +..|+..|+.+.|+.  +.+++++.||+|+.||+
T Consensus       374 VKvWn~~Sgf-----C~vT---------------------------FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  374 VKVWNTQSGF-----CFVT---------------------------FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             EEEEeccCce-----EEEE---------------------------eccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            9999998775     4333                           348999999999998  89999999999999999


Q ss_pred             CCceeeeecccc-CcceEEEEEe--CCeEEEEcCCC-cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591          156 ADLKCLESIKAH-DDAVNGLVAS--KGIVYSASADG-KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       156 ~~~~~~~~~~~~-~~~v~~i~~~--~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  231 (353)
                      ...+..+++... .....|++..  +..+.+|+.|. .|.+|++++++     ++..+.+|.+++ .+++|+|.+..|++
T Consensus       422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEgPV-s~l~f~~~~~~LaS  495 (893)
T KOG0291|consen  422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEGPV-SGLSFSPDGSLLAS  495 (893)
T ss_pred             cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCCcc-eeeEEccccCeEEe
Confidence            999999988653 2344566663  34666666665 59999999998     899999999987 99999999999999


Q ss_pred             ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEE----------------
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR----------------  295 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------  295 (353)
                      ++.|.+|++||+-......+...  ..+...-.++.|+|+.|+++..||.|.+||.....+...                
T Consensus       496 ~SWDkTVRiW~if~s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~  573 (893)
T KOG0291|consen  496 GSWDKTVRIWDIFSSSGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR  573 (893)
T ss_pred             ccccceEEEEEeeccCceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence            99999999999876532222211  123334455566799999999999999999886553211                


Q ss_pred             -eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          296 -VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       296 -~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                       ...-.......+.+++++|    |..+++||..+.|++|++.++-.++..+
T Consensus       574 ~ta~~sa~~K~Ftti~ySaD----G~~IlAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  574 ITAENSAKGKTFTTICYSAD----GKCILAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             eehhhcccCCceEEEEEcCC----CCEEEecCCcccEEEEECchhheeeeEE
Confidence             1111122357899999999    9999999999999999999987776544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3e-37  Score=231.75  Aligned_cols=248  Identities=21%  Similarity=0.339  Sum_probs=219.3

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      ++.+.+.+|.+.|.+++++  +.++++|+.|++++|||+.++.     +..+++                          
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----Lkltlt--------------------------  190 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----LKLTLT--------------------------  190 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----EEEeec--------------------------
Confidence            3455668999999999998  7899999999999999999987     333332                          


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCc
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~  200 (353)
                       +|...|..+++++  .++++++.|+.|+.||++..+.++.+.+|-..|.|++..|  +.+++|+.|.++++||+++.. 
T Consensus       191 -Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-  268 (460)
T KOG0285|consen  191 -GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-  268 (460)
T ss_pred             -chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-
Confidence             8999999999999  8999999999999999999999999999999999999964  599999999999999999987 


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecC
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSA  278 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  278 (353)
                          ....+.+|...+ .++.+.|-...+++|+.|++|++||+..+    +....+..|...+.+++.+  ...+|+++.
T Consensus       269 ----~V~~l~GH~~~V-~~V~~~~~dpqvit~S~D~tvrlWDl~ag----kt~~tlt~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  269 ----SVHVLSGHTNPV-ASVMCQPTDPQVITGSHDSTVRLWDLRAG----KTMITLTHHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             ----eEEEecCCCCcc-eeEEeecCCCceEEecCCceEEEeeeccC----ceeEeeecccceeeEEecCCchhhhhccCC
Confidence                788999999887 99999998889999999999999999999    6667778888888887766  556777777


Q ss_pred             CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      |. |+-|++..+.   .+..+.+|+.-|++++...|     .++++|+++|.+.+||.+++-..+..
T Consensus       340 dn-ik~w~~p~g~---f~~nlsgh~~iintl~~nsD-----~v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  340 DN-IKQWKLPEGE---FLQNLSGHNAIINTLSVNSD-----GVLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             cc-ceeccCCccc---hhhccccccceeeeeeeccC-----ceEEEcCCceEEEEEecCcCcccccc
Confidence            65 9999999887   67779999999999999886     58999999999999999988766654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-37  Score=233.25  Aligned_cols=274  Identities=25%  Similarity=0.374  Sum_probs=231.1

Q ss_pred             cEEEEEeCCCcEEEEeC--CCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           27 EFILSASQGKDIIVWQQ--PDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      +-++.|.-.+..+..+.  ....+...+.+|..+|+.+.|.  -..+++++.|++|++||..+++     +...+     
T Consensus        77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----~e~~L-----  146 (406)
T KOG0295|consen   77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----LERSL-----  146 (406)
T ss_pred             cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----hhhhh-----
Confidence            44555544444444331  2223455667789999999998  4467788899999999999987     33332     


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE--e
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA--S  177 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~--~  177 (353)
                                            .+|...+..+.|+.  .++++++.|-.+++||..+ .++++.+.+|...|.++.+  .
T Consensus       147 ----------------------rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~  204 (406)
T KOG0295|consen  147 ----------------------RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL  204 (406)
T ss_pred             ----------------------hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec
Confidence                                  38999999999998  8999999999999999987 6788888899999999999  4


Q ss_pred             CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591          178 KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       178 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      ++++++++.|.+|+.|++.++.     +...+.+|...+ ..+..+.||..+++++.|.++++|-+.+.    .+...+.
T Consensus       205 gd~ilS~srD~tik~We~~tg~-----cv~t~~~h~ewv-r~v~v~~DGti~As~s~dqtl~vW~~~t~----~~k~~lR  274 (406)
T KOG0295|consen  205 GDHILSCSRDNTIKAWECDTGY-----CVKTFPGHSEWV-RMVRVNQDGTIIASCSNDQTLRVWVVATK----QCKAELR  274 (406)
T ss_pred             CCeeeecccccceeEEecccce-----eEEeccCchHhE-EEEEecCCeeEEEecCCCceEEEEEeccc----hhhhhhh
Confidence            5699999999999999999998     899999999976 99999999999999999999999999987    4556667


Q ss_pred             ccceeEEEEEEc-----------------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591          258 AHEMAVLCVCLV-----------------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF  320 (353)
Q Consensus       258 ~~~~~v~~~~~~-----------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  320 (353)
                      .|+-++-|++|-                 +.++.+++.|++|++||+.++.   ++.++.+|...|..++|+|.    |+
T Consensus       275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~----Gk  347 (406)
T KOG0295|consen  275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPG----GK  347 (406)
T ss_pred             ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe---EEEEEecccceeeeeEEcCC----Ce
Confidence            777766666541                 2599999999999999999987   89999999999999999999    99


Q ss_pred             EEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591          321 LLYSGSLDKSLRVWWVSKQSSTSDSEEKS  349 (353)
Q Consensus       321 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  349 (353)
                      ||+++.+|+++++||+++.+++...+..+
T Consensus       348 yi~ScaDDktlrvwdl~~~~cmk~~~ah~  376 (406)
T KOG0295|consen  348 YILSCADDKTLRVWDLKNLQCMKTLEAHE  376 (406)
T ss_pred             EEEEEecCCcEEEEEeccceeeeccCCCc
Confidence            99999999999999999999999887543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-36  Score=218.02  Aligned_cols=272  Identities=20%  Similarity=0.272  Sum_probs=224.5

Q ss_pred             EEEEEC---CcEEEEEe-------CCCcEEEEeCCCceeeEEecc--CceeeEEEEEe---CCEEEEecCCCcEEEEEcc
Q 018591           20 SSLALC---GEFILSAS-------QGKDIIVWQQPDLRMFTKFGH--GDGSVKAVVTV---GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        20 ~~~~~~---~~~l~s~~-------~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~   84 (353)
                      +++.|+   .++||.+.       ..|++.|-++...+-+..+..  -...+..++|+   .+.+++++.||.+++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            567776   44554443       358999999865554444322  25688999998   6789999999999999954


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCL  161 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~  161 (353)
                      ...                               .+...+.+|..+|.++.|++   ..+++++.|++|++|+...++.+
T Consensus        92 ~~s-------------------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv  140 (311)
T KOG0277|consen   92 MPS-------------------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV  140 (311)
T ss_pred             CCC-------------------------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence            433                               23455668999999999998   77888899999999999999999


Q ss_pred             eeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCc
Q 018591          162 ESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGF  237 (353)
Q Consensus       162 ~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  237 (353)
                      .++.+|...|....|   .++.+++++.|+++++||++...     ....++.|...+ .++.|+. +...+++|+.|+.
T Consensus       141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-----k~~~i~ah~~Ei-l~cdw~ky~~~vl~Tg~vd~~  214 (311)
T KOG0277|consen  141 QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-----KFMSIEAHNSEI-LCCDWSKYNHNVLATGGVDNL  214 (311)
T ss_pred             EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-----ceeEEEecccee-EeecccccCCcEEEecCCCce
Confidence            999999999999999   45699999999999999998765     344578888655 9999987 5678999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      |+.||++.-+   .+..++.+|...|..+.++   ...|++++.|-+++|||...+..  .+.+...|+..+..+.|++-
T Consensus       215 vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds--~~e~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  215 VRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS--AIETVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             EEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh--hhhhhhccceEEeccccccc
Confidence            9999999864   5577789999999999887   56899999999999999986543  55667789999999999987


Q ss_pred             CCCCCeEEEEccCCCeEEEEEc
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      .   ..++|+.+.|+.++||+-
T Consensus       290 ~---~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  290 D---PGQVASTGWDELLYVWNP  308 (311)
T ss_pred             c---Cceeeecccccceeeecc
Confidence            3   679999999999999973

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.2e-36  Score=251.35  Aligned_cols=245  Identities=24%  Similarity=0.406  Sum_probs=219.1

Q ss_pred             CCCceeee-eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEE
Q 018591            4 KSHRSLAV-LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRV   80 (353)
Q Consensus         4 ~~~~~~~~-l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~   80 (353)
                      .+++.+.. +.||.+.|+++++.  +++|++|+.|.++++||..+|++...+.+|...|.++...+..+++|+.|.+|++
T Consensus       236 ~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkV  315 (537)
T KOG0274|consen  236 NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKV  315 (537)
T ss_pred             ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEE
Confidence            45666777 99999999999997  9999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCcee
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      |+++++.     .+                           .++.+|.++|.++..+.+++++|+.|++|++||+.++++
T Consensus       316 W~v~n~~-----~l---------------------------~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~c  363 (537)
T KOG0274|consen  316 WDVTNGA-----CL---------------------------NLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKC  363 (537)
T ss_pred             EeccCcc-----eE---------------------------EEeccccccEEEEEecCCEEEEEecCceEEEEEhhhcee
Confidence            9999776     33                           233369999999999999999999999999999999999


Q ss_pred             eeeccccCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCC-CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591          161 LESIKAHDDAVNGLVASK-GIVYSASADGKIKAWGKELG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV  238 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  238 (353)
                      +..+.+|...|+++.+.+ +.+++|+.|++|++||+++. +     +...+.+|...+ ..+.+  .+++|++++.|++|
T Consensus       364 l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~-----c~~tl~~h~~~v-~~l~~--~~~~Lvs~~aD~~I  435 (537)
T KOG0274|consen  364 LKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRK-----CIHTLQGHTSLV-SSLLL--RDNFLVSSSADGTI  435 (537)
T ss_pred             eeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhh-----hhhhhcCCcccc-ccccc--ccceeEeccccccE
Confidence            999999999999999977 89999999999999999998 5     888888888755 44444  46799999999999


Q ss_pred             EEeeccccccceeeeeeccc-cceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591          239 MGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      ++||...+    .....+.+ |...+.++......+++++.||.+++||+++++.
T Consensus       436 k~WD~~~~----~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  436 KLWDAEEG----ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             EEeecccC----ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence            99999998    55555555 6688888888778899999999999999999873

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-34  Score=228.14  Aligned_cols=293  Identities=19%  Similarity=0.267  Sum_probs=240.7

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCC-
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQD-   75 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-   75 (353)
                      +.....+..+..|..+++-..|+  |.|+|+|...|+|||||....+  +..+++.-.++|..|.|+  +.++++.++. 
T Consensus        46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr  125 (603)
T KOG0318|consen   46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR  125 (603)
T ss_pred             CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence            34455567788999999999996  8899999999999999976533  334566678999999998  6777776543 


Q ss_pred             ---CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCc
Q 018591           76 ---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKT  149 (353)
Q Consensus        76 ---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~  149 (353)
                         |.+.+||.-+.                                  ...+.+|...|++++|-|   -++++|+.|+.
T Consensus       126 erfg~~F~~DSG~S----------------------------------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~  171 (603)
T KOG0318|consen  126 ERFGHVFLWDSGNS----------------------------------VGEITGHSRRINSVDFKPSRPFRIATGSDDNT  171 (603)
T ss_pred             cceeEEEEecCCCc----------------------------------cceeeccceeEeeeeccCCCceEEEeccCCCe
Confidence               35666765332                                  223348999999999988   68999999999


Q ss_pred             EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeee---ccCCceeeEEEEcC
Q 018591          150 LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILE---GHKDVSLNSVVVSD  224 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~  224 (353)
                      |.+|+-.-.+...+++.|..-|+++.|+|+  ++++++.||++.+||-.+++     ....+.   +|.+.+ .+++|+|
T Consensus       172 v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge-----~vg~l~~~~aHkGsI-falsWsP  245 (603)
T KOG0318|consen  172 VAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-----KVGELEDSDAHKGSI-FALSWSP  245 (603)
T ss_pred             EEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc-----EEEEecCCCCccccE-EEEEECC
Confidence            999998888888899999999999999444  99999999999999999998     566666   788877 9999999


Q ss_pred             CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCc
Q 018591          225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG  304 (353)
Q Consensus       225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~  304 (353)
                      |++.+++++.|.+++|||+.+.....+........... ..+-|....|++.+.+|.|.+++.....   .+..+.||..
T Consensus       246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq-vG~lWqkd~lItVSl~G~in~ln~~d~~---~~~~i~GHnK  321 (603)
T KOG0318|consen  246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ-VGCLWQKDHLITVSLSGTINYLNPSDPS---VLKVISGHNK  321 (603)
T ss_pred             CCceEEEecCCceEEEEEeeccceEEEeecCCchhceE-EEEEEeCCeEEEEEcCcEEEEecccCCC---hhheeccccc
Confidence            99999999999999999999984443333332222333 3444558899999999999999999887   6777899999


Q ss_pred             CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      .|+++..+|+    +++|++|+.||.|.-|+..++..-.
T Consensus       322 ~ITaLtv~~d----~~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  322 SITALTVSPD----GKTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             ceeEEEEcCC----CCEEEeeccCceEEEEecCCccccc
Confidence            9999999999    9999999999999999999876553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-35  Score=211.20  Aligned_cols=251  Identities=21%  Similarity=0.287  Sum_probs=213.1

Q ss_pred             eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      ....+..+.++|.++.|+  |++.++++.|.+|++|+...+.     ++                           +.+.
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----li---------------------------ktYs   56 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----LI---------------------------KTYS   56 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----ee---------------------------eeec
Confidence            445678899999999998  9999999999999999988776     33                           3344


Q ss_pred             ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcc
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSH  201 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~  201 (353)
                      +|..+|..++.+.  ..+++|+.|..+.+||+++++.++.+.+|.+.|+.+.|++.  .+++|+.|.++++||.+.... 
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~-  135 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF-  135 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-
Confidence            8999999888765  89999999999999999999999999999999999999444  899999999999999998763 


Q ss_pred             cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591          202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKS  281 (353)
Q Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  281 (353)
                        .+.+.+....+.+ .++...  +..+++|+.||+++.||++.+    .......+|+....+++.+++..++++.|++
T Consensus       136 --ePiQildea~D~V-~Si~v~--~heIvaGS~DGtvRtydiR~G----~l~sDy~g~pit~vs~s~d~nc~La~~l~st  206 (307)
T KOG0316|consen  136 --EPIQILDEAKDGV-SSIDVA--EHEIVAGSVDGTVRTYDIRKG----TLSSDYFGHPITSVSFSKDGNCSLASSLDST  206 (307)
T ss_pred             --CccchhhhhcCce-eEEEec--ccEEEeeccCCcEEEEEeecc----eeehhhcCCcceeEEecCCCCEEEEeeccce
Confidence              3555666666655 777766  668999999999999999998    6666677788778888888999999999999


Q ss_pred             EEEEecCCCcceEEeccccCCCcCeEEE--EeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          282 IGIWKREAFGKLCRVGAITGHEGPVKCL--QASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      +++.|-.+++   .+..++||...=..+  +++..    ...+++|++||.|.+||+.+...+...+.
T Consensus       207 lrLlDk~tGk---lL~sYkGhkn~eykldc~l~qs----dthV~sgSEDG~Vy~wdLvd~~~~sk~~~  267 (307)
T KOG0316|consen  207 LRLLDKETGK---LLKSYKGHKNMEYKLDCCLNQS----DTHVFSGSEDGKVYFWDLVDETQISKLSV  267 (307)
T ss_pred             eeecccchhH---HHHHhcccccceeeeeeeeccc----ceeEEeccCCceEEEEEeccceeeeeecc
Confidence            9999999998   788899998765444  44554    68999999999999999999887776553

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=236.47  Aligned_cols=238  Identities=24%  Similarity=0.397  Sum_probs=205.8

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      .++.|..+|+++.|+  +.+++||+.+|.|++|+..-........+|...|.+++|+  ...+++++.||+|+|||....
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~  212 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP  212 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence            356899999999995  9999999999999999975444444445566999999998  788999999999999998776


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      .+                                .+++.+|.-.|.+++|+|  .++++|+.|..|++||.++++++.++
T Consensus       213 ke--------------------------------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  213 KE--------------------------------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             ch--------------------------------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence            52                                333459999999999999  89999999999999999999999999


Q ss_pred             cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEe
Q 018591          165 KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGW  241 (353)
Q Consensus       165 ~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~  241 (353)
                      ..|...|..+.|  +.++|++++.|..++++|+++.+     .+..+++|...+ ++++|+| ...+|.+|+.||.|..|
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-----El~~~r~Hkkdv-~~~~WhP~~~~lftsgg~Dgsvvh~  334 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-----ELFTYRGHKKDV-TSLTWHPLNESLFTSGGSDGSVVHW  334 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-----HHHHhhcchhhh-eeeccccccccceeeccCCCceEEE
Confidence            999999999999  44599999999999999999766     677889999887 9999999 46788999999999999


Q ss_pred             eccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591          242 EGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~  289 (353)
                      .+....   .+.....+|...|.+++++  |.+|++|+.|.++++|....
T Consensus       335 ~v~~~~---p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  335 VVGLEE---PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             eccccc---cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            998442   2333456789999999987  99999999999999998653

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.4e-37  Score=229.93  Aligned_cols=282  Identities=18%  Similarity=0.214  Sum_probs=228.2

Q ss_pred             eeeeeeCccCceEEEEECC---cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591            8 SLAVLSGHVGSVSSLALCG---EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~~---~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~   84 (353)
                      .+..|.||.+.|.|++-+.   ..+++|+.||.|++||+...+++..+..|.+.|..|+++.+.+++++.|.+|+.|.++
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence            3567899999999999973   4799999999999999999999999999999999999998999999999999999987


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      ...      +.++                            .-...+..+.-+.  +.+++++.  .|.|||.....++.
T Consensus       138 ~~p------~~ti----------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~  181 (433)
T KOG0268|consen  138 GPP------LHTI----------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVS  181 (433)
T ss_pred             CCc------ceee----------------------------eccccccccccccccccccccCc--eeeecccccCCccc
Confidence            631      1111                            1223445555544  67777775  59999999889999


Q ss_pred             eccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          163 SIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      .+.--...|.++.|++.   .|++++.|+.|.+||+++..     ++........ . +.++|+|++-.++++++|..++
T Consensus       182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~-----Pl~KVi~~mR-T-N~IswnPeafnF~~a~ED~nlY  254 (433)
T KOG0268|consen  182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS-----PLKKVILTMR-T-NTICWNPEAFNFVAANEDHNLY  254 (433)
T ss_pred             eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC-----ccceeeeecc-c-cceecCccccceeeccccccce
Confidence            99877888999999554   88899999999999999987     3332222111 2 7899999888899999999999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (353)
                      .||++.-.   .+.....+|...++.+.++  |+-+++|+.|.+|+||..+.+..-....+  .--..|.++.||.|   
T Consensus       255 ~~DmR~l~---~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~D---  326 (433)
T KOG0268|consen  255 TYDMRNLS---RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMD---  326 (433)
T ss_pred             ehhhhhhc---ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecc---
Confidence            99998763   5666778899999999887  99999999999999999987653211111  11246999999999   


Q ss_pred             CCeEEEEccCCCeEEEEEcCCCCC
Q 018591          318 GGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       318 ~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                       .+++++||+|+.|++|...-.+.
T Consensus       327 -skyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  327 -SKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             -ccEEEecCCCcceeeeecchhhh
Confidence             99999999999999998765443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=7e-35  Score=210.68  Aligned_cols=281  Identities=17%  Similarity=0.254  Sum_probs=220.5

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      .|+||..+++.+.|+  |++|++++.|.+..||-..+|+.+.++.+|++.|+++..+  ...+++|+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            688999999999997  9999999999999999988999999999999999999887  889999999999999999999


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-----CCCcEEEEEcC---
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-----WDKTLKVWRVA---  156 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-----~dg~v~iwd~~---  156 (353)
                      +     .+..+                            ....+|..+.|+.  ++++...     ..+.|.++|++   
T Consensus        85 k-----~la~~----------------------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   85 K-----QLATW----------------------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             c-----EEEEe----------------------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            8     33333                            3556888899988  4444432     34679999998   


Q ss_pred             ----CceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          157 ----DLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       157 ----~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                          ..++...+..+...++.+.|  .+..+++|..||.|.+||.+++.    ......+.|...+ +.+.++|+..+++
T Consensus       132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----~~v~s~~~h~~~I-nd~q~s~d~T~Fi  206 (327)
T KOG0643|consen  132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----ELVDSDEEHSSKI-NDLQFSRDRTYFI  206 (327)
T ss_pred             hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc----eeeechhhhcccc-ccccccCCcceEE
Confidence                45567777788899999999  45599999999999999999986    2555666777755 9999999999999


Q ss_pred             eecCCCcEEEeeccccccceeeeeeccccceeEE--EEEEcCcEEEEecCCCeEEE--EecCCCc---------ceEEec
Q 018591          231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--CVCLVGEFLCSGSADKSIGI--WKREAFG---------KLCRVG  297 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~i~i--w~~~~~~---------~~~~~~  297 (353)
                      +++.|.+-++||..+-..    ..++. ...++.  ++.|..++++.|+.....-+  =+.+.++         ..+.+.
T Consensus       207 T~s~Dttakl~D~~tl~v----~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig  281 (327)
T KOG0643|consen  207 TGSKDTTAKLVDVRTLEV----LKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG  281 (327)
T ss_pred             ecccCccceeeeccceee----EEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence            999999999999998732    22222 123333  44454555655554322211  1222221         012566


Q ss_pred             cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      ..++|-++|++++|+|+    |+..++|++||.|++.-++.
T Consensus       282 rvkGHFGPINsvAfhPd----GksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  282 RVKGHFGPINSVAFHPD----GKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccccCcceeEECCC----CcccccCCCCceEEEEEecc
Confidence            67899999999999999    99999999999999986654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-34  Score=210.40  Aligned_cols=293  Identities=19%  Similarity=0.309  Sum_probs=227.0

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC--CCc
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ--DSR   77 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~   77 (353)
                      ++.++.+.|+.-.+.|+++.|+  |.+|++++.|.++++||..+++.++++..+.-.+..++|.  .+.++.++.  |.+
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            4567778888888999999996  9999999999999999999999999998888888888886  666666665  889


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      ||.-++.+.+     .                           .+.+.||...|++++.+|  +.+++++.|++|++||+
T Consensus        82 IryLsl~dNk-----y---------------------------lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl  129 (311)
T KOG1446|consen   82 IRYLSLHDNK-----Y---------------------------LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL  129 (311)
T ss_pred             eEEEEeecCc-----e---------------------------EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEe
Confidence            9999998876     3                           455559999999999999  99999999999999999


Q ss_pred             CCceeeeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591          156 ADLKCLESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                      +..++...+.....++  +++ +.+ .+|++.....|++||++.-...+............. .+.+.|+|||++++.+.
T Consensus       130 R~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e-w~~l~FS~dGK~iLlsT  206 (311)
T KOG1446|consen  130 RVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE-WTDLEFSPDGKSILLST  206 (311)
T ss_pred             cCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc-eeeeEEcCCCCEEEEEe
Confidence            9888887775544444  555 344 666666666999999997653333332222222333 48999999999999999


Q ss_pred             CCCcEEEeeccccccceeeeeecccccee-EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC-CCcCeEEEEe
Q 018591          234 SDGFVMGWEGNVEIVRWKLACETKAHEMA-VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQA  311 (353)
Q Consensus       234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~  311 (353)
                      ..+.+++.|.-.+.....+.........+ -.++.|+++++++|+.||+|.+|+++++.   .+..+.+ +.+++.++.|
T Consensus       207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~---~v~~~~~~~~~~~~~~~f  283 (311)
T KOG1446|consen  207 NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK---KVAVLRGPNGGPVSCVRF  283 (311)
T ss_pred             CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc---EeeEecCCCCCCcccccc
Confidence            99999999998885333322222222222 35567899999999999999999999988   5666666 7899999999


Q ss_pred             ecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      .|.    -.+++++  +..+.+|=....+
T Consensus       284 nP~----~~mf~sa--~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  284 NPR----YAMFVSA--SSNLVFWLPDEDA  306 (311)
T ss_pred             CCc----eeeeeec--CceEEEEeccccc
Confidence            998    4455554  5568888655443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-35  Score=245.97  Aligned_cols=288  Identities=22%  Similarity=0.328  Sum_probs=243.9

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      .|..-+..|..++|+  ...++++-..|.|++||..-+.++..|..|.++|..+.|.  ...+++|+.|-.|++|+..+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            455567889999997  6699999999999999999999999999999999999998  778999999999999999877


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      +     ++.++                           .+|-..|..+.|++  ..+++++.|.+|+||+..+++++..+
T Consensus        84 r-----clftL---------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl  131 (1202)
T KOG0292|consen   84 R-----CLFTL---------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL  131 (1202)
T ss_pred             e-----ehhhh---------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence            6     43333                           38999999999999  89999999999999999999999999


Q ss_pred             cccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcc------------------------cccceeeeeccCCceee
Q 018591          165 KAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSH------------------------CHSLKGILEGHKDVSLN  218 (353)
Q Consensus       165 ~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~~~~~~~~~~~v~  218 (353)
                      .+|...|.|..|.  .+.++++|.|.+||+||+...+..                        .......+++|...+ +
T Consensus       132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV-N  210 (1202)
T KOG0292|consen  132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV-N  210 (1202)
T ss_pred             ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc-c
Confidence            9999999999994  469999999999999998543311                        112345677888877 9


Q ss_pred             EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC--cEEEEecCCCeEEEEecCCCcceEEe
Q 018591          219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG--EFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      .++|+|.-..+++|+.|..|++|.....+ .| ...+..+|...|.++-+++  +++++.+.|++|++||+...+   .+
T Consensus       211 waAfhpTlpliVSG~DDRqVKlWrmnetK-aW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---~v  285 (1202)
T KOG0292|consen  211 WAAFHPTLPLIVSGADDRQVKLWRMNETK-AW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---SV  285 (1202)
T ss_pred             eEEecCCcceEEecCCcceeeEEEecccc-ce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---ce
Confidence            99999999999999999999999987652 22 3456789999999998875  899999999999999998766   66


Q ss_pred             ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ..++...+..+.++-+|.    .++++.| .|+-+.||.++...+
T Consensus       286 ~tfrrendRFW~laahP~----lNLfAAg-HDsGm~VFkleRErp  325 (1202)
T KOG0292|consen  286 QTFRRENDRFWILAAHPE----LNLFAAG-HDSGMIVFKLERERP  325 (1202)
T ss_pred             eeeeccCCeEEEEEecCC----cceeeee-cCCceEEEEEcccCc
Confidence            677777788999999998    7776666 555577888774433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-35  Score=219.08  Aligned_cols=322  Identities=17%  Similarity=0.228  Sum_probs=244.1

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      .++++.|.||.+.|+.++.+  ...+.+++.|.+.+||.++++.++..+.+|.+.|+++.|.  +.++++++.|++..||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            35677889999999999996  5689999999999999999999999999999999999998  7889999999999999


Q ss_pred             EcccCcccee----EEe---eccccccceeeeecccce--eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcE
Q 018591           82 KVSRSSENVF----RLV---DTLPTTKDYLGKFMKQSN--YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTL  150 (353)
Q Consensus        82 ~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v  150 (353)
                      ...-.-+.+.    .-.   ....... ..........  .....+.+...+.+|.+.|.+..|..  +.+++++.|.+.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sD-e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSD-EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhccc-ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            8321110000    000   0000000 0000000000  01122334556779999999999987  899999999999


Q ss_pred             EEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          151 KVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      .+||+++++.+..+.+|....+.++-.+.  ++++.+.|.+.++||++..-    .....+++|.+.+ +++.|..+. .
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI----~sV~VFQGHtdtV-TS~vF~~dd-~  370 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI----QSVAVFQGHTDTV-TSVVFNTDD-R  370 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc----ceeeeecccccce-eEEEEecCC-c
Confidence            99999999999999999999999888444  78899999999999999543    3567899999987 999998775 5


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEe-ccccCCCcC
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRV-GAITGHEGP  305 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~h~~~  305 (353)
                      +++|+.|.+|++||+++.....   ..+. ...++..++.  .+..++.--.+..|++||++........ ..-++|...
T Consensus       371 vVSgSDDrTvKvWdLrNMRspl---ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM  446 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLRNMRSPL---ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM  446 (481)
T ss_pred             eeecCCCceEEEeeeccccCcc---eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence            8899999999999999864222   2221 2334444444  4668888888999999999865432221 145689999


Q ss_pred             eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      |+|.+|..+.+  -.-|++++.|..+.-|++..+.
T Consensus       447 V~c~AW~eehp--~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  447 VTCCAWLEEHP--ACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eeeeeccccCc--ccccccccccceeeeeEecccC
Confidence            99999998755  4678999999999999998765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-34  Score=207.18  Aligned_cols=276  Identities=21%  Similarity=0.241  Sum_probs=228.5

Q ss_pred             eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEE--eccCceeeEEEEEe---CCEEEEecCCCcEEEEE
Q 018591           10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~   82 (353)
                      +.+++|...|.+|+|+  |..|++|+.|+++++|+++..+....  ..+|.+.|..++|+   ++.+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5678999999999996  99999999999999999987765544  46788999999997   78999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      ++.++     +....                            .....=.-+.|+|  +++++++.|..|.+.|.++.+.
T Consensus        94 ~r~~k-----~~~~i----------------------------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~  140 (313)
T KOG1407|consen   94 IRSGK-----CTARI----------------------------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI  140 (313)
T ss_pred             eccCc-----EEEEe----------------------------eccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence            99876     32222                            2222333567887  8999999999999999999888


Q ss_pred             eeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591          161 LESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV  238 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  238 (353)
                      ....+. ...+..++|  ++++++.....|.|.|......+     +...++.|.... .++.|+|+|++|++|+.|..+
T Consensus       141 ~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-----pv~si~AH~snC-icI~f~p~GryfA~GsADAlv  213 (313)
T KOG1407|consen  141 VNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK-----PVQSIKAHPSNC-ICIEFDPDGRYFATGSADALV  213 (313)
T ss_pred             eehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc-----cccccccCCcce-EEEEECCCCceEeecccccee
Confidence            777653 567778888  55577777778999999888776     788899999776 899999999999999999999


Q ss_pred             EEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591          239 MGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      .+||+..-    .+...+..+.-+|..++|+  |++||+|+.|..|-|=++++|.+...+    .++++...++|+|.  
T Consensus       214 SLWD~~EL----iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----~~~~~t~tVAWHPk--  283 (313)
T KOG1407|consen  214 SLWDVDEL----ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----PCEGPTFTVAWHPK--  283 (313)
T ss_pred             eccChhHh----hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----eccCCceeEEecCC--
Confidence            99999876    5566667778888887775  999999999999999999999954443    37889999999999  


Q ss_pred             CCCeEEEEccCC---------CeEEEEEcC
Q 018591          317 GGGFLLYSGSLD---------KSLRVWWVS  337 (353)
Q Consensus       317 ~~~~~l~s~~~d---------g~i~iw~~~  337 (353)
                        ..+||-++.|         |.+++|-++
T Consensus       284 --~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  284 --RPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             --CceeeEEecCCCCccccccceeEEecCC
Confidence              7888887764         567777654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-35  Score=237.11  Aligned_cols=247  Identities=21%  Similarity=0.318  Sum_probs=217.5

Q ss_pred             EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      +++..++..|.++.+.  ...++++-.+|.|.+|+.++..     .+..+.                           -.
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-----mVksfe---------------------------V~   54 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-----MVKSFE---------------------------VS   54 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-----eeeeee---------------------------ec
Confidence            3455678899999998  6788999999999999999876     333332                           34


Q ss_pred             CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591          128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      ..+|.+..|-+  +.+++|+.|..|++|+.++++.+..|++|...|.+++.+|.  ++++++.|-+|++||.+..=    
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w----  130 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW----  130 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce----
Confidence            45777788877  89999999999999999999999999999999999999665  99999999999999998764    


Q ss_pred             cceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc----CcEEEEecC
Q 018591          204 SLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV----GEFLCSGSA  278 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~  278 (353)
                      .+.+.+++|...+ ..++|.| |.+.+++++-|++|++|.+.+.    .+..++.+|...|.|+.+-    ..+|++|+.
T Consensus       131 a~~qtfeGH~HyV-Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD  205 (794)
T KOG0276|consen  131 ACEQTFEGHEHYV-MQVAFNPKDPNTFASASLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD  205 (794)
T ss_pred             eeeeEEcCcceEE-EEEEecCCCccceeeeeccccEEEEEcCCC----CCceeeeccccCcceEEeccCCCcceEEecCC
Confidence            5788999999987 9999999 5689999999999999999988    6777888999999999984    349999999


Q ss_pred             CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      |.+++|||.++..   +++++.||...|..+.|+|.    -.+++|||+||++|||+-.+.+...+
T Consensus       206 D~tiKvWDyQtk~---CV~TLeGHt~Nvs~v~fhp~----lpiiisgsEDGTvriWhs~Ty~lE~t  264 (794)
T KOG0276|consen  206 DLTIKVWDYQTKS---CVQTLEGHTNNVSFVFFHPE----LPIIISGSEDGTVRIWNSKTYKLEKT  264 (794)
T ss_pred             CceEEEeecchHH---HHHHhhcccccceEEEecCC----CcEEEEecCCccEEEecCcceehhhh
Confidence            9999999999877   99999999999999999999    78999999999999999887765544

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.2e-34  Score=210.13  Aligned_cols=262  Identities=21%  Similarity=0.327  Sum_probs=209.8

Q ss_pred             EEEEEeCCCcEEEEeCCCc------------eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591           28 FILSASQGKDIIVWQQPDL------------RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVD   95 (353)
Q Consensus        28 ~l~s~~~dg~v~vwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~   95 (353)
                      .+++|+....|.-+++...            .++..+..|.++|++++.++.++++|+.|-+|++||+....+       
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-------   75 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-------   75 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhh-------
Confidence            3677888777777764321            224556889999999999999999999999999999987652       


Q ss_pred             ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591           96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV  171 (353)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  171 (353)
                                               ...+..|.+.|+++.|.+    +.|++|+.||.|.+|+....+++..+++|.+.|
T Consensus        76 -------------------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~V  130 (362)
T KOG0294|consen   76 -------------------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQV  130 (362)
T ss_pred             -------------------------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccc
Confidence                                     222337999999999998    489999999999999999999999999999999


Q ss_pred             EEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591          172 NGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       172 ~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  249 (353)
                      +.++++|.  +.++.+.|+.++.||+-.++     ......-... . +.+.|+|.|.+++.+..++ |-+|.+...   
T Consensus       131 t~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-----~a~v~~L~~~-a-t~v~w~~~Gd~F~v~~~~~-i~i~q~d~A---  199 (362)
T KOG0294|consen  131 TDLSIHPSGKLALSVGGDQVLRTWNLVRGR-----VAFVLNLKNK-A-TLVSWSPQGDHFVVSGRNK-IDIYQLDNA---  199 (362)
T ss_pred             ceeEecCCCceEEEEcCCceeeeehhhcCc-----cceeeccCCc-c-eeeEEcCCCCEEEEEeccE-EEEEecccH---
Confidence            99999443  77788999999999998887     2333332222 2 5699999999999888775 899998876   


Q ss_pred             eeeeeeccccceeEEEEEE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          250 WKLACETKAHEMAVLCVCL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                       ........ +..+.|+.| ++..|++|+.|+.|.+||.++..   ++..+.+|+.+|.++.+-.+..  +.+|+|+|.|
T Consensus       200 -~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~--~~~lvTaSSD  272 (362)
T KOG0294|consen  200 -SVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPE--HEYLVTASSD  272 (362)
T ss_pred             -hHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCC--ceEEEEeccC
Confidence             22222222 245677777 48899999999999999998865   7778899999999998543311  8899999999


Q ss_pred             CeEEEEEcCCC
Q 018591          329 KSLRVWWVSKQ  339 (353)
Q Consensus       329 g~i~iw~~~~~  339 (353)
                      |.|+|||++..
T Consensus       273 G~I~vWd~~~~  283 (362)
T KOG0294|consen  273 GFIKVWDIDME  283 (362)
T ss_pred             ceEEEEEcccc
Confidence            99999999876

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5.5e-36  Score=228.78  Aligned_cols=283  Identities=20%  Similarity=0.313  Sum_probs=232.9

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      ....+..|.+.|..+.|-  ...|++|+.|..|++|+....+  .+.++.+..+.|+++.|+  +.++++++.|+.+++|
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW  246 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence            345788899999999993  5899999999999999976655  677888888999999998  7889999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      +++...     ...++                           .+|++.|+++.|..  ..+++|+.|.+|++||+....
T Consensus       247 nvd~~r-----~~~TL---------------------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~  294 (459)
T KOG0288|consen  247 NVDSLR-----LRHTL---------------------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY  294 (459)
T ss_pred             eccchh-----hhhhh---------------------------cccccceeeehhhccccceeeccccchhhhhhhhhhh
Confidence            998876     33333                           38999999999987  449999999999999999999


Q ss_pred             eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          160 CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      |.+++.. ...+..|...+..+++|..|++|++||.+...     +......+.  .|+++..++++..+.+++.|.++.
T Consensus       295 C~kt~l~-~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~-----~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~  366 (459)
T KOG0288|consen  295 CSKTVLP-GSQCNDIVCSISDVISGHFDKKVRFWDIRSAD-----KTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLK  366 (459)
T ss_pred             eeccccc-cccccceEecceeeeecccccceEEEeccCCc-----eeeEeecCc--ceeeEeeccCCeEEeeecCCCcee
Confidence            9888743 56777888788899999999999999999887     566666655  369999999999999999999999


Q ss_pred             Eeeccccccceee--eeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591          240 GWEGNVEIVRWKL--ACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       240 i~d~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (353)
                      +.|+++......+  .....++.-.-..++|++.|+++|+.||.|+||++.+++....+. .......|++++|+|.   
T Consensus       367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~-~s~s~~aI~s~~W~~s---  442 (459)
T KOG0288|consen  367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS-LSTSNAAITSLSWNPS---  442 (459)
T ss_pred             eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec-cCCCCcceEEEEEcCC---
Confidence            9999987322211  112234455567788889999999999999999999987433222 2222236999999999   


Q ss_pred             CCeEEEEccCCCeEEEEE
Q 018591          318 GGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       318 ~~~~l~s~~~dg~i~iw~  335 (353)
                       |..|++++.++.+.+|.
T Consensus       443 -G~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  443 -GSGLLSADKQKAVTLWT  459 (459)
T ss_pred             -CchhhcccCCcceEecC
Confidence             99999999999999993

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=199.67  Aligned_cols=247  Identities=18%  Similarity=0.278  Sum_probs=209.8

Q ss_pred             eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           47 RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      ..++.+.+|.+.+..++|+   |..|++++.|..|++|+...+.  .+.+...+..                        
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s~~ck~vld~------------------------   58 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--SWTCKTVLDD------------------------   58 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--cEEEEEeccc------------------------
Confidence            4567788999999999999   3389999999999999988532  2334433332                        


Q ss_pred             eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC--CceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCC
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA--DLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~  197 (353)
                        +|+..|.+++|+|  ++|++|+.|.++.||.-.  +.+++..+++|...|.+++|  ++++|++++.|+.|-+|.+..
T Consensus        59 --~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de  136 (312)
T KOG0645|consen   59 --GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE  136 (312)
T ss_pred             --cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence              7999999999999  999999999999999754  35789999999999999999  556999999999999999885


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEE
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCS  275 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~  275 (353)
                      ..  ...+...++.|...+ ..+.|+|...+|++++.|.+|++|.-.. ...+.+...+.+|...+.++.|+  |..|++
T Consensus       137 dd--Efec~aVL~~HtqDV-K~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s  212 (312)
T KOG0645|consen  137 DD--EFECIAVLQEHTQDV-KHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVS  212 (312)
T ss_pred             CC--cEEEEeeeccccccc-cEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence            43  345778899999887 9999999999999999999999998875 45678899999999999999886  889999


Q ss_pred             ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      ++.|++++||...+.-       -..|+.+++.+.|. +     ..|++++.|+.|+++.-..
T Consensus       213 ~sdD~tv~Iw~~~~~~-------~~~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  213 CSDDGTVSIWRLYTDL-------SGMHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             ecCCcceEeeeeccCc-------chhcccceEeeeec-c-----cceEeccCCCEEEEEEecC
Confidence            9999999999966321       23478899999999 3     3899999999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-34  Score=237.84  Aligned_cols=276  Identities=19%  Similarity=0.208  Sum_probs=198.8

Q ss_pred             EEec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEe---------------ecccc------------
Q 018591           50 TKFG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLV---------------DTLPT------------   99 (353)
Q Consensus        50 ~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~---------------~~~~~------------   99 (353)
                      +.+. .|.+.|+++.|+  |.+||+||.||.|+||.+...+.......               .....            
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            3444 677777777776  77777777787778877755211000000               00000            


Q ss_pred             -ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-
Q 018591          100 -TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-  176 (353)
Q Consensus       100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-  176 (353)
                       ..........+.........+.+.+.||.+.|..+.|+. ++|++++.|.+|++|++...+|+..| .|...|+|++| 
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn  418 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN  418 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence             000000011112223344556778889999999999999 99999999999999999999999998 58999999999 


Q ss_pred             --eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeee
Q 018591          177 --SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLAC  254 (353)
Q Consensus       177 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  254 (353)
                        +++++++|+.||.+|||++...+     . ..+..-. ..|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~-----V-v~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKK-----V-VDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCe-----e-Eeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence              44599999999999999998876     2 2222223 4469999999999999999999999999988744332222


Q ss_pred             ecc----ccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCc--CeEEEEeecCCCCCCeEEEEc
Q 018591          255 ETK----AHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG--PVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       255 ~~~----~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      ...    .....|+.+.+.   ...+++.+.|..|||||.++.+   .+..++|+..  .-....|+.|    |++++++
T Consensus       492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---lv~KfKG~~n~~SQ~~Asfs~D----gk~IVs~  564 (712)
T KOG0283|consen  492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---LVHKFKGFRNTSSQISASFSSD----GKHIVSA  564 (712)
T ss_pred             eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh---hhhhhcccccCCcceeeeEccC----CCEEEEe
Confidence            211    112278888775   4468888999999999997766   6667776543  3355678888    9999999


Q ss_pred             cCCCeEEEEEcCCCC
Q 018591          326 SLDKSLRVWWVSKQS  340 (353)
Q Consensus       326 ~~dg~i~iw~~~~~~  340 (353)
                      ++|..|++|+.....
T Consensus       565 seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  565 SEDSWVYIWKNDSFN  579 (712)
T ss_pred             ecCceEEEEeCCCCc
Confidence            999999999986544

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-33  Score=229.78  Aligned_cols=278  Identities=25%  Similarity=0.381  Sum_probs=235.0

Q ss_pred             eeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           10 AVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      ..+.||+..|.+++++ .+.++..+..+.+++|+..+.++++++...  .+.+..|-  ++++++|...|.+.++|+...
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            4677999999999997 444444445679999999999999999764  66666665  789999999999999999876


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-----ce
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-----LK  159 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-----~~  159 (353)
                      .     ++.+.+                           .|.+.|.+++..|  ..+++|+.|.+|++||..-     +.
T Consensus       445 ~-----l~Eti~---------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt  492 (888)
T KOG0306|consen  445 S-----LVETIR---------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT  492 (888)
T ss_pred             h-----hhhhhh---------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence            5     333332                           7999999999999  8999999999999999742     11


Q ss_pred             ee--------eeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591          160 CL--------ESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       160 ~~--------~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  229 (353)
                      ..        +++ .-...|.|+.++|+  +++++-.|.++++|-+++.+     ....+.+|.-++ .++.++||++.+
T Consensus       493 ~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHkLPV-~smDIS~DSkli  565 (888)
T KOG0306|consen  493 QKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHKLPV-LSMDISPDSKLI  565 (888)
T ss_pred             cceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-----eeeeecccccce-eEEeccCCcCeE
Confidence            11        112 13577899999544  88889999999999999987     788889998876 999999999999


Q ss_pred             EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE
Q 018591          230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK  307 (353)
Q Consensus       230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~  307 (353)
                      ++|+.|..|++|-+.-+    .+...+.+|...|+++.+-  ..++++++.|+.|+-||-...+   .+..+.+|...|+
T Consensus       566 vTgSADKnVKiWGLdFG----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe---~iq~L~~H~~ev~  638 (888)
T KOG0306|consen  566 VTGSADKNVKIWGLDFG----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE---EIQKLDGHHSEVW  638 (888)
T ss_pred             EeccCCCceEEeccccc----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh---hheeeccchheee
Confidence            99999999999999988    6777888999999998875  5689999999999999987665   8888999999999


Q ss_pred             EEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       308 ~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +++.+|+    |.+++++|.|.+|++|.-...
T Consensus       639 cLav~~~----G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  639 CLAVSPN----GSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             eeEEcCC----CCeEEeccCCceeEeeeccCc
Confidence            9999999    999999999999999987663

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.1e-34  Score=215.09  Aligned_cols=271  Identities=23%  Similarity=0.328  Sum_probs=217.5

Q ss_pred             CCCceeeeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCCceee----EEeccCceeeEEEEEe--CCEEEEe
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPDLRMF----TKFGHGDGSVKAVVTV--GNKVFTA   72 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~--~~~l~s~   72 (353)
                      ..|+..+++.||+++|.++++-     ...|++|+.|.++++|.++.++..    ..-.+|...|.++...  +..+++|
T Consensus       132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg  211 (423)
T KOG0313|consen  132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG  211 (423)
T ss_pred             cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence            4688999999999999999982     346999999999999998876543    3335899999999976  8999999


Q ss_pred             cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEE
Q 018591           73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLK  151 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~  151 (353)
                      +.|.+|++|+.+............-+       +-..........+.+...+.+|..+|.++.|.+ ..+++++.|.+|+
T Consensus       212 S~D~~lkiWs~~~~~~~~~E~~s~~r-------rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk  284 (423)
T KOG0313|consen  212 SWDTMLKIWSVETDEEDELESSSNRR-------RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIK  284 (423)
T ss_pred             cccceeeecccCCCccccccccchhh-------hhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEE
Confidence            99999999995444322222111100       000001122234456677789999999999999 9999999999999


Q ss_pred             EEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-Ce
Q 018591          152 VWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KW  228 (353)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  228 (353)
                      .||+.++..+.++.. ...++++...+  .++++|+.|..+++||.+++.  .......+.+|...+ .++.|+|.. ..
T Consensus       285 ~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~--gs~v~~s~~gH~nwV-ssvkwsp~~~~~  360 (423)
T KOG0313|consen  285 VWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD--GSVVSQSLIGHKNWV-SSVKWSPTNEFQ  360 (423)
T ss_pred             EEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCC--CceeEEeeecchhhh-hheecCCCCceE
Confidence            999999999888865 67889999833  499999999999999999875  334667889999976 999999964 56


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecC
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~  288 (353)
                      |++++.|+++++||+++..   .+...+.+|...+.++.|+ +..+++|+.|++|+|+.-.
T Consensus       361 ~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  361 LVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            8899999999999999873   3677888999999999998 6699999999999999754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.4e-35  Score=217.48  Aligned_cols=279  Identities=21%  Similarity=0.299  Sum_probs=230.0

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec--------cCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG--------HGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      |....+-|..|+  |++|++|+.||-|.+||..+|+..+.++        -+..+|.|+.|+  ...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            445677888886  9999999999999999999998766543        357899999998  6789999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      .++++.     ++..+..                          .|+..|+|+.|+.  ..+++++.|.++++.-+.+|+
T Consensus       291 ri~tG~-----ClRrFdr--------------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  291 RIETGQ-----CLRRFDR--------------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             EEecch-----HHHHhhh--------------------------hhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence            999987     4444432                          7999999999998  899999999999999999999


Q ss_pred             eeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcC-CCCeEEeecCC
Q 018591          160 CLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSD-DGKWVYGGGSD  235 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d  235 (353)
                      +++.+++|...|+...|  .+..+++++.||+|++|+.++.+     +...++. ..+.+|+++..-| +...++++...
T Consensus       340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence            99999999999999999  33499999999999999999887     5554443 3455567777766 55788899999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA  315 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  315 (353)
                      +++.+-++..............+......+++|.|.++.+.+.|+.++-|...+++   .-..+.-|+..|..++-+|. 
T Consensus       415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~---LE~tl~VhEkdvIGl~HHPH-  490 (508)
T KOG0275|consen  415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK---LERTLPVHEKDVIGLTHHPH-  490 (508)
T ss_pred             CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc---eeeeeecccccccccccCcc-
Confidence            99999998765221111112223333445667789999999999999999999988   55667789999999999999 


Q ss_pred             CCCCeEEEEccCCCeEEEEE
Q 018591          316 VGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~  335 (353)
                         .+.|++-++||.+++|.
T Consensus       491 ---qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 ---QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ---cchhhhhcccchhhhcC
Confidence               89999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.9e-34  Score=208.49  Aligned_cols=251  Identities=24%  Similarity=0.328  Sum_probs=210.3

Q ss_pred             eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      ++..+.+|.+.|+.+.|+  |..|++|+.|..|.+|++....+..                               -.+.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------------------------------~~lk   87 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-------------------------------WVLK   87 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-------------------------------eeec
Confidence            344568999999999998  8999999999999999987655322                               2223


Q ss_pred             ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCc
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      +|+++|..+.|..  +.+++++.|.+|+.||.+++++++.+++|..-|+++..   .+.++.+++.|+++++||++... 
T Consensus        88 gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-  166 (338)
T KOG0265|consen   88 GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-  166 (338)
T ss_pred             cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-
Confidence            8999999999998  89999999999999999999999999999999999986   33388899999999999999876 


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecC
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSA  278 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  278 (353)
                          ..+.++...  .++++.|..++..+.+|+-|+.|++||++.+    .....+.+|..+|+.++.  +|.++.+-+.
T Consensus       167 ----~~~t~~~ky--qltAv~f~d~s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsM  236 (338)
T KOG0265|consen  167 ----AIKTFENKY--QLTAVGFKDTSDQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSM  236 (338)
T ss_pred             ----hhhccccce--eEEEEEecccccceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccc
Confidence                444443332  3599999999999999999999999999988    677888999999988766  5999999999


Q ss_pred             CCeEEEEecCCCcceEE-eccccCCCc----CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          279 DKSIGIWKREAFGKLCR-VGAITGHEG----PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       279 dg~i~iw~~~~~~~~~~-~~~~~~h~~----~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      |.++++||++......+ +..+.+|..    .....+|+|+    +..+..|+.|..+++||......+..
T Consensus       237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~----~~~i~ags~dr~vyvwd~~~r~~lyk  303 (338)
T KOG0265|consen  237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN----GTKITAGSADRFVYVWDTTSRRILYK  303 (338)
T ss_pred             cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC----CCccccccccceEEEeecccccEEEE
Confidence            99999999986543223 555666533    4567899999    99999999999999999988665543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-34  Score=237.78  Aligned_cols=254  Identities=23%  Similarity=0.336  Sum_probs=221.6

Q ss_pred             EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      ..++..+..|..++|.  ...++++-..|.|++||.+-+.     ++..+                           .+|
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----li~rF---------------------------deH   50 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----LIDRF---------------------------DEH   50 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----HHhhh---------------------------hcc
Confidence            3455667889999998  5689999999999999998765     33333                           389


Q ss_pred             CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591          128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      .++|..++|+|  .++++|+.|-.|++|+..+.+++.++.+|-..|..+.|+..  .++++|.|.+|+||+..+.+    
T Consensus        51 dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~----  126 (1202)
T KOG0292|consen   51 DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK----  126 (1202)
T ss_pred             CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc----
Confidence            99999999999  89999999999999999999999999999999999999555  99999999999999999998    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc-------------------------ceeeeeeccc
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV-------------------------RWKLACETKA  258 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------~~~~~~~~~~  258 (353)
                       ++..+.+|...+ .|..|+|....+++++-|.+|++||+..-..                         .......+.+
T Consensus       127 -~iavltGHnHYV-McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  127 -CIAVLTGHNHYV-MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             -eEEEEecCceEE-EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence             899999999987 9999999999999999999999999864211                         1123345567


Q ss_pred             cceeEEEEEEcC--cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          259 HEMAVLCVCLVG--EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       259 ~~~~v~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      |...|.-.++.+  .++++|+.|+.|++|.+...+ ...+.+..+|.+.|+++-|+|.    .++++|.|+|++|+|||+
T Consensus       205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~----q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPH----QDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             cccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCc----cceeEecCCCccEEEEec
Confidence            888888888876  799999999999999998754 4578889999999999999998    889999999999999999


Q ss_pred             CCCCCccccc
Q 018591          337 SKQSSTSDSE  346 (353)
Q Consensus       337 ~~~~~~~~~~  346 (353)
                      .+.+.+++..
T Consensus       280 ~kRt~v~tfr  289 (1202)
T KOG0292|consen  280 TKRTSVQTFR  289 (1202)
T ss_pred             ccccceeeee
Confidence            9999988874

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-32  Score=203.20  Aligned_cols=267  Identities=18%  Similarity=0.212  Sum_probs=215.3

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCcccee
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      ..+.|++|.|+  ++.|+.++.||++++||....++...+. |..++.+++|. ...+++|+.||.|+.+|++++.... 
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~-   89 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ-   89 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCccee-
Confidence            36789999997  6677778899999999998887766665 47899999998 7889999999999999999886322 


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDD  169 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  169 (353)
                                                      +..|..+|.|+.+.+  +.+++|+.|++|++||.+.......+.. ..
T Consensus        90 --------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~k  136 (323)
T KOG1036|consen   90 --------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GK  136 (323)
T ss_pred             --------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cc
Confidence                                            126999999999997  9999999999999999988666666644 55


Q ss_pred             ceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591          170 AVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       170 ~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  249 (353)
                      .|.++...++.|++|+.+..+.+||+++...    ..+.....-...+.++++-|++.-.++++-||.|.+=.++.....
T Consensus       137 kVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~  212 (323)
T KOG1036|consen  137 KVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA  212 (323)
T ss_pred             eEEEEeccCCEEEEeecCceEEEEEcccccc----hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence            9999999999999999999999999998762    223333344455699999999888999999999988666554322


Q ss_pred             eeeeeeccccc---------eeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591          250 WKLACETKAHE---------MAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG  318 (353)
Q Consensus       250 ~~~~~~~~~~~---------~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  318 (353)
                      ......++.|.         .+|.+++++  ...|++|+.||.|.+||+.+.+   .+..+...+..|.+++|+.+    
T Consensus       213 ~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK---rl~q~~~~~~SI~slsfs~d----  285 (323)
T KOG1036|consen  213 QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK---RLKQLAKYETSISSLSFSMD----  285 (323)
T ss_pred             hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh---hhhhccCCCCceEEEEeccC----
Confidence            23333344332         356777776  5689999999999999999887   56666666788999999999    


Q ss_pred             CeEEEEccC
Q 018591          319 GFLLYSGSL  327 (353)
Q Consensus       319 ~~~l~s~~~  327 (353)
                      |..||.++.
T Consensus       286 G~~LAia~s  294 (323)
T KOG1036|consen  286 GSLLAIASS  294 (323)
T ss_pred             CCeEEEEec
Confidence            999999874

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=225.86  Aligned_cols=258  Identities=21%  Similarity=0.328  Sum_probs=220.9

Q ss_pred             ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR  122 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (353)
                      .+.+..+.+|+..|.++.|.   +.+|++++.|+.|+||++-...    .+                           .+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----~~---------------------------lr  252 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----RC---------------------------LR  252 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----ce---------------------------eh
Confidence            34667889999999999886   7889999999999999997733    13                           44


Q ss_pred             eeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCC
Q 018591          123 LWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       123 ~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~  197 (353)
                      .+.+|..+|..+.|++  ..+++++.|+.|++||+++|+++..+.. ...++|+.+.   ++.+++|+.|+.|+.||+++
T Consensus       253 tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  253 TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence            4559999999999999  8999999999999999999999999854 5678899992   24899999999999999999


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  277 (353)
                      ++     +.+.+..|-+.+ ..+.|-++++++++.+.|+.+++|+.+.+. ..+.......|..+...+.|++.++++-+
T Consensus       332 ~k-----vvqeYd~hLg~i-~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  332 GK-----VVQEYDRHLGAI-LDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             hH-----HHHHHHhhhhhe-eeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhc
Confidence            98     888888888876 999999999999999999999999998873 23445556678888899999999999999


Q ss_pred             CCCeEEEEecCCCcceEEeccccCCC--cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITGHE--GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .|+.|.+|.+...-+...-..+.||.  +--..+.||||    |.+|++|+.||.+.+||..+-+.+....
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD----G~~l~SGdsdG~v~~wdwkt~kl~~~lk  471 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD----GRTLCSGDSDGKVNFWDWKTTKLVSKLK  471 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC----CCeEEeecCCccEEEeechhhhhhhccc
Confidence            99999999987655554556677885  44677899999    9999999999999999999887776554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.7e-32  Score=247.27  Aligned_cols=267  Identities=17%  Similarity=0.192  Sum_probs=211.6

Q ss_pred             CCcEEEEeCCCceeeEEe-----ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeee
Q 018591           35 GKDIIVWQQPDLRMFTKF-----GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKF  107 (353)
Q Consensus        35 dg~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (353)
                      +|.+++|+..+.+....+     ..|...|.+++|+  ++++++|+.|+.|++|+.+....... ...            
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~------------  523 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH------------  523 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc------------
Confidence            678999998876655443     3488999999998  88999999999999999764210000 000            


Q ss_pred             cccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC---CeE
Q 018591          108 MKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK---GIV  181 (353)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~l  181 (353)
                                 .+... ..+...+.+++|++   .+|++++.||.|++||+.+++.+..+.+|...|++++|++   +.|
T Consensus       524 -----------~~~~~-~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        524 -----------YPVVE-LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL  591 (793)
T ss_pred             -----------cceEE-ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence                       00001 13446788999986   7899999999999999999999999999999999999942   489


Q ss_pred             EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc-CCCCeEEeecCCCcEEEeeccccccceeeeeeccccc
Q 018591          182 YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS-DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE  260 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  260 (353)
                      ++|+.||.|++||++++.     ....+..+ .. +.++.|+ +++.++++|+.||.|++||++...   .....+.+|.
T Consensus       592 ~Sgs~Dg~v~iWd~~~~~-----~~~~~~~~-~~-v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~  661 (793)
T PLN00181        592 ASGSDDGSVKLWSINQGV-----SIGTIKTK-AN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHS  661 (793)
T ss_pred             EEEcCCCEEEEEECCCCc-----EEEEEecC-CC-eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEecCCC
Confidence            999999999999999876     44555544 23 4889985 579999999999999999998752   2334556788


Q ss_pred             eeEEEEEE-cCcEEEEecCCCeEEEEecCCCc---ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          261 MAVLCVCL-VGEFLCSGSADKSIGIWKREAFG---KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       261 ~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      ..+.++.+ ++.+|++++.|+.|++||+....   ....+..+.+|...+..++|+|+    +.+|++|+.||.|++|+.
T Consensus       662 ~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~----~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        662 KTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS----DGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC----CCEEEEEeCCCEEEEEEC
Confidence            88988887 47899999999999999997532   12256678899999999999999    899999999999999998


Q ss_pred             CCCC
Q 018591          337 SKQS  340 (353)
Q Consensus       337 ~~~~  340 (353)
                      ..+.
T Consensus       738 ~~~~  741 (793)
T PLN00181        738 AFPM  741 (793)
T ss_pred             CCCC
Confidence            6554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.7e-33  Score=232.29  Aligned_cols=240  Identities=30%  Similarity=0.500  Sum_probs=205.4

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeC-CCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQ-PDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      +++.+.+|...|++++|+  ++++++|+.|++|++||+ ..+..++++.+|...|++++|+  ++.+++|+.|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            667789999999999996  889999999999999999 5668999999999999999998  88999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK-  159 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-  159 (353)
                      +++++     +                           .+.+.+|.+.|++++|++  ..+++++.|+.|++||+.++. 
T Consensus       275 ~~~~~-----~---------------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  275 VRTGE-----C---------------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             ccCCe-----E---------------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence            99865     3                           334448999999999999  899999999999999999998 


Q ss_pred             -eeeeccccCcc--eEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc--eeeEEEEcCCCCeEEee
Q 018591          160 -CLESIKAHDDA--VNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV--SLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       160 -~~~~~~~~~~~--v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~  232 (353)
                       +...+..+...  ++++.|++  .++++++.|+.+++||+....     ....+.+|...  .+.+...++.+.++++|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg  397 (456)
T KOG0266|consen  323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-----SVGTYTGHSNLVRCIFSPTLSTGGKLIYSG  397 (456)
T ss_pred             eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-----ceeeecccCCcceeEecccccCCCCeEEEE
Confidence             56777666555  99999943  399999999999999999887     67777777764  33455567899999999


Q ss_pred             cCCCcEEEeeccccccceeeeeecccc-ceeEEEEEEc--CcEEEEec--CCCeEEEEecC
Q 018591          233 GSDGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCLV--GEFLCSGS--ADKSIGIWKRE  288 (353)
Q Consensus       233 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~--~dg~i~iw~~~  288 (353)
                      +.|+.|++||+.++    .....+.+| ...+..++++  .+++++++  .|+.+++|..+
T Consensus       398 ~~d~~v~~~~~~s~----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  398 SEDGSVYVWDSSSG----GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eCCceEEEEeCCcc----chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999987    566667777 6666666665  78888888  78999999854

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=223.96  Aligned_cols=281  Identities=25%  Similarity=0.413  Sum_probs=233.4

Q ss_pred             CCCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceee--EEeccCceeeEE-EEEe---CCEEEEecCCC
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMF--TKFGHGDGSVKA-VVTV---GNKVFTAHQDS   76 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~-~~~~---~~~l~s~~~dg   76 (353)
                      +.++..+.+.||...|..+++. +..++++|.||++++|+-...+.+  ..+.+|.+.|.. +++.   +..+++|+.|+
T Consensus         2 ~~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    2 PQYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             CcceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence            3467889999999999999985 778999999999999997655544  346667777776 7775   46799999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEc
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~  155 (353)
                      ++.+|...+..                                +...+.+|+..|.|++... ..+++|+.|.++++|-.
T Consensus        82 ~i~v~~~~~~~--------------------------------P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   82 TIIVFKLSQAE--------------------------------PLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI  129 (745)
T ss_pred             eEEEEecCCCC--------------------------------chhhhhccccceeeeecCCcCceEecccccceEEecc
Confidence            99999988765                                2344459999999999777 67999999999999975


Q ss_pred             CCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591          156 ADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS  234 (353)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  234 (353)
                        +++...+++|+..|+++.. +.+.+++|+.|.+|++|.-  ++     ..+++.+|.+.+ +.+++-+++ .+++++.
T Consensus       130 --~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~-----~l~tf~gHtD~V-RgL~vl~~~-~flScsN  198 (745)
T KOG0301|consen  130 --GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GT-----LLKTFSGHTDCV-RGLAVLDDS-HFLSCSN  198 (745)
T ss_pred             --hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cc-----hhhhhccchhhe-eeeEEecCC-CeEeecC
Confidence              5677779999999999998 7789999999999999986  33     678999999877 999999875 4788999


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS  312 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~  312 (353)
                      ||.|++|++..     ....+..+|...+.+++.  ++..++++++|++++||+...     +.+.+.-....|+++.+.
T Consensus       199 Dg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e-----~~q~I~lPttsiWsa~~L  268 (745)
T KOG0301|consen  199 DGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE-----CVQVITLPTTSIWSAKVL  268 (745)
T ss_pred             CceEEEEeccC-----ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc-----eEEEEecCccceEEEEEe
Confidence            99999999954     477788899999988884  588999999999999999872     444454344589999999


Q ss_pred             cCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          313 PNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       313 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ++    |+ +++|+.||.||||........
T Consensus       269 ~N----gD-Ivvg~SDG~VrVfT~~k~R~A  293 (745)
T KOG0301|consen  269 LN----GD-IVVGGSDGRVRVFTVDKDRKA  293 (745)
T ss_pred             eC----CC-EEEeccCceEEEEEecccccC
Confidence            87    54 688889999999998765443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-33  Score=202.44  Aligned_cols=232  Identities=18%  Similarity=0.193  Sum_probs=197.8

Q ss_pred             cCceEEEEEC---CcEEEEEeCCCcEEEEeCC-CceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCcc
Q 018591           16 VGSVSSLALC---GEFILSASQGKDIIVWQQP-DLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        16 ~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      .+.+..++|+   .+.+++++.||++++||+. ...+++.++.|...|.++.|+   +..+++++.|++|++|+...+. 
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-  138 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-  138 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-
Confidence            5688899996   7799999999999999954 345788899999999999998   6778888999999999987765 


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeecc
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIK  165 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~  165 (353)
                          .                           .+.+.+|...|....|+|   +++++++.|+.+++||++..-....++
T Consensus       139 ----S---------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~  187 (311)
T KOG0277|consen  139 ----S---------------------------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE  187 (311)
T ss_pred             ----c---------------------------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence                2                           333458999999999999   999999999999999998754444488


Q ss_pred             ccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEe
Q 018591          166 AHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGW  241 (353)
Q Consensus       166 ~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~  241 (353)
                      .|...+.++.|   +++.+++|+.|+.|+.||+++-+    .++..+.+|.-.+ ..+.|||. ...|++++.|=++++|
T Consensus       188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~AV-Rkvk~Sph~~~lLaSasYDmT~riw  262 (311)
T KOG0277|consen  188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGLAV-RKVKFSPHHASLLASASYDMTVRIW  262 (311)
T ss_pred             eccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCceEE-EEEecCcchhhHhhhccccceEEec
Confidence            99999999999   56699999999999999999877    4677788887766 99999996 4688999999999999


Q ss_pred             eccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEec
Q 018591          242 EGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~  287 (353)
                      |...+.   ........|..-+..+.++   +.++|+.+.|+.++||+.
T Consensus       263 ~~~~~d---s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  263 DPERQD---SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccch---hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            998653   3444556788888888876   889999999999999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-32  Score=200.90  Aligned_cols=265  Identities=19%  Similarity=0.266  Sum_probs=211.4

Q ss_pred             CccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-ceee-EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           14 GHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-LRMF-TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        14 ~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      .-.+.|.+|+|+   ..+++++|.||+||+|+++. |..+ +....|.++|.+++|+  |..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            356899999998   56788999999999999986 3443 3446689999999998  899999999999999999998


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeee
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      +...+                                 ..|.++|.++.|-+    ..|++|+.|++|+.||.+...++.
T Consensus       105 Q~~~v---------------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~  151 (347)
T KOG0647|consen  105 QVSQV---------------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA  151 (347)
T ss_pred             Ceeee---------------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence            73222                                 26999999999987    478999999999999999999988


Q ss_pred             eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      ++.- .+.++++.....+++.+..++.|.+|+++++..    ............+++++..++....+.|+-+|.+.+..
T Consensus       152 t~~L-PeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t----e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~  226 (347)
T KOG0647|consen  152 TLQL-PERVYAADVLYPMAVVATAERHIAVYNLENPPT----EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQY  226 (347)
T ss_pred             eeec-cceeeehhccCceeEEEecCCcEEEEEcCCCcc----hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEe
Confidence            8864 678899988888999999999999999987752    22223333344458999999988889999999999999


Q ss_pred             ccccccceeeeeeccccc---------eeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591          243 GNVEIVRWKLACETKAHE---------MAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~---------~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~  311 (353)
                      +..+.+.  ....++.|+         ..|.++++.  -..|++++.||+..+||-+...   .+...+.|..+|++..|
T Consensus       227 id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~f  301 (347)
T KOG0647|consen  227 IDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCSF  301 (347)
T ss_pred             cCCCCcc--CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeEe
Confidence            8875321  112222232         345555554  6789999999999999987665   56677889999999999


Q ss_pred             ecCCCCCCeEEEEc
Q 018591          312 SPNAVGGGFLLYSG  325 (353)
Q Consensus       312 ~~~~~~~~~~l~s~  325 (353)
                      +.+    |.+++-+
T Consensus       302 n~~----G~ifaYA  311 (347)
T KOG0647|consen  302 NRN----GSIFAYA  311 (347)
T ss_pred             cCC----CCEEEEE
Confidence            999    8877654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=5.6e-33  Score=218.41  Aligned_cols=298  Identities=16%  Similarity=0.251  Sum_probs=220.2

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce----eeEEe-ccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR----MFTKF-GHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~----~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      -..|++|+..|++++++  |..|++||.|.+|++||+....    ..+.+ ......|.++.|+  ++.|++.+.....+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            35789999999999996  9999999999999999987532    22222 2335578999998  88888888888999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~  156 (353)
                      ++|-+...     .+..... ..++...              ..-.||...++|.+|+|   +.+++++.||++++||++
T Consensus       240 l~DRdG~~-----~~e~~KG-DQYI~Dm--------------~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~  299 (641)
T KOG0772|consen  240 LLDRDGFE-----IVEFSKG-DQYIRDM--------------YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN  299 (641)
T ss_pred             EEccCCce-----eeeeecc-chhhhhh--------------hccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence            99976654     2221111 1111111              11138999999999999   899999999999999997


Q ss_pred             Ccee-eeec-----cccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC-ceeeEEEEcCCCC
Q 018591          157 DLKC-LESI-----KAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD-VSLNSVVVSDDGK  227 (353)
Q Consensus       157 ~~~~-~~~~-----~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  227 (353)
                      +.+. .+.+     .+..-+++.++|+++  .+++|+.||.|.+|+.....  .......-.+|.. ..|+++.||++|+
T Consensus       300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~--v~p~~~vk~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT--VRPVMKVKDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc--cccceEeeeccCCCCceeEEEeccccc
Confidence            6442 2222     223457888999433  89999999999999985543  2223344455654 2349999999999


Q ss_pred             eEEeecCCCcEEEeecccccccee-eeeeccccceeEEEEEEcCcEEEEecC------CCeEEEEecCCCcceEEecccc
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWK-LACETKAHEMAVLCVCLVGEFLCSGSA------DKSIGIWKREAFGKLCRVGAIT  300 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~  300 (353)
                      +|++-+.|+++++||++..+.... ...-.......-+|++|+.++|++|..      .|.+.+||..+.+   .+..+.
T Consensus       378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~  454 (641)
T KOG0772|consen  378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKID  454 (641)
T ss_pred             hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEec
Confidence            999999999999999998643222 122223344556788899999999864      5789999998877   555555


Q ss_pred             CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      -....|..+.|+|.    -+.+..|+.||.+++|=
T Consensus       455 i~~aSvv~~~Whpk----LNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  455 ISTASVVRCLWHPK----LNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             CCCceEEEEeecch----hhheeeecCCCceEEEE
Confidence            55778999999998    77889999999999984

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.8e-32  Score=217.84  Aligned_cols=267  Identities=21%  Similarity=0.301  Sum_probs=221.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY  103 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  103 (353)
                      .+.||.|.. ..|++|+..+++.......+...|+++.|+  |.+|++|..+|.|.+||..+..     .+..+      
T Consensus       188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k-----~~~~~------  255 (484)
T KOG0305|consen  188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK-----KTRTL------  255 (484)
T ss_pred             CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc-----ccccc------
Confidence            556776654 589999999998777776668999999998  9999999999999999998765     22222      


Q ss_pred             eeeecccceeEeecccceeeeee-cCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeee-ccccCcceEEEEE--eCC
Q 018591          104 LGKFMKQSNYVQTRRHHKRLWIE-HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLES-IKAHDDAVNGLVA--SKG  179 (353)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~i~~--~~~  179 (353)
                                           .+ |...|.+++|....+.+|+.|+.|..+|++..+.... +.+|...|..+.|  ...
T Consensus       256 ---------------------~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~  314 (484)
T KOG0305|consen  256 ---------------------RGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN  314 (484)
T ss_pred             ---------------------cCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC
Confidence                                 24 9999999999999999999999999999998776555 8899999999999  344


Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeec--CCCcEEEeeccccccceeeeeec
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGG--SDGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                      ++++|+.|+.+.|||.....     +...+..|...+ .+++|+|- ...||+|+  .|+.|++||..++    ..+...
T Consensus       315 ~lASGgnDN~~~Iwd~~~~~-----p~~~~~~H~aAV-KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g----~~i~~v  384 (484)
T KOG0305|consen  315 QLASGGNDNVVFIWDGLSPE-----PKFTFTEHTAAV-KALAWCPWQSGLLATGGGSADRCIKFWNTNTG----ARIDSV  384 (484)
T ss_pred             eeccCCCccceEeccCCCcc-----ccEEEeccceee-eEeeeCCCccCceEEcCCCcccEEEEEEcCCC----cEeccc
Confidence            99999999999999997666     778888898887 99999994 56788764  6999999999987    333222


Q ss_pred             cccceeEEEEEEcCc--EEEE--ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591          257 KAHEMAVLCVCLVGE--FLCS--GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       257 ~~~~~~v~~~~~~~~--~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~  332 (353)
                       .....|+.+.|...  -|++  |..++.|.||+..+.+   .+..+.+|...|..++++||    |..+++|+.|.+++
T Consensus       385 -dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPd----g~~i~t~a~DETlr  456 (484)
T KOG0305|consen  385 -DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK---LVAELLGHTSRVLYLALSPD----GETIVTGAADETLR  456 (484)
T ss_pred             -ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc---eeeeecCCcceeEEEEECCC----CCEEEEecccCcEE
Confidence             23567888888732  2443  4568899999999866   78889999999999999999    99999999999999


Q ss_pred             EEEcCCCCCcc
Q 018591          333 VWWVSKQSSTS  343 (353)
Q Consensus       333 iw~~~~~~~~~  343 (353)
                      +|++-......
T Consensus       457 fw~~f~~~~~~  467 (484)
T KOG0305|consen  457 FWNLFDERPKS  467 (484)
T ss_pred             eccccCCCCcc
Confidence            99988754333

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-32  Score=211.15  Aligned_cols=273  Identities=21%  Similarity=0.303  Sum_probs=222.1

Q ss_pred             cCceEEEEECC----cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccc
Q 018591           16 VGSVSSLALCG----EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSEN   89 (353)
Q Consensus        16 ~~~v~~~~~~~----~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~   89 (353)
                      .++|++++|+.    ++.+++|.  .+.+|+..+....+.+..-...+.++.|.  |.++++|+..|.|+++|..+..  
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~--  101 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV--  101 (487)
T ss_pred             cCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHH--
Confidence            46899999973    45555543  89999999888888777778889999997  9999999999999999965432  


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                         .                           .+.+.+|+.++..+.|+|   ..+++|+.|+.+++||+.+......+.+
T Consensus       102 ---i---------------------------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~  151 (487)
T KOG0310|consen  102 ---I---------------------------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG  151 (487)
T ss_pred             ---H---------------------------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC
Confidence               1                           233348999999999999   7889999999999999999887678999


Q ss_pred             cCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591          167 HDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG  243 (353)
Q Consensus       167 ~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  243 (353)
                      |+..|.|.++.+.   ++++|+.||.|++||++...      ....+-..+.+|..+.+-|.|..+++++.+ .|++||+
T Consensus       152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl  224 (487)
T KOG0310|consen  152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDL  224 (487)
T ss_pred             CcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEe
Confidence            9999999999333   89999999999999999874      223333344456999999999999988754 5999999


Q ss_pred             cccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeE
Q 018591          244 NVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL  321 (353)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  321 (353)
                      -++.   +.......|...|+|+...  +..|++|+-|+.|++||+.+.+   .+..+. ..++|.+++.+|+    ++.
T Consensus       225 ~~G~---qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K---vv~s~~-~~~pvLsiavs~d----d~t  293 (487)
T KOG0310|consen  225 TTGG---QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK---VVHSWK-YPGPVLSIAVSPD----DQT  293 (487)
T ss_pred             cCCc---eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE---EEEeee-cccceeeEEecCC----Cce
Confidence            9663   4455556699999999885  6899999999999999987766   454443 5789999999999    899


Q ss_pred             EEEccCCCeEEEEEcCCCC
Q 018591          322 LYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       322 l~s~~~dg~i~iw~~~~~~  340 (353)
                      ++.|..||.+.+=+....+
T Consensus       294 ~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  294 VVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             EEEecccceeeeehhhccc
Confidence            9999999988777544433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-32  Score=227.01  Aligned_cols=246  Identities=17%  Similarity=0.290  Sum_probs=190.7

Q ss_pred             eeee-CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--------------------------------c--------
Q 018591           10 AVLS-GHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--------------------------------L--------   46 (353)
Q Consensus        10 ~~l~-~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--------------------------------~--------   46 (353)
                      +.+. +|.++|+++.|+  |+|||+||.||.|+||.+..                                .        
T Consensus       260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            4455 899999999996  99999999999999998654                                0        


Q ss_pred             --------------------eeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           47 --------------------RMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        47 --------------------~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                                          +++..+.+|.+.|..|.|+ .++|++++.|.+||+|++....     ++..+        
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-----CL~~F--------  406 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-----CLKVF--------  406 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcc-----eeeEE--------
Confidence                                2345567899999999999 8999999999999999998776     55554        


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC-e
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG-I  180 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~-~  180 (353)
                                          .|..-|+|++|+|   +++++|+-||.|+||++...+.+.-... ...|+++++ +++ .
T Consensus       407 --------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~  465 (712)
T KOG0283|consen  407 --------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKG  465 (712)
T ss_pred             --------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCce
Confidence                                7999999999999   8999999999999999987666554443 589999999 333 8


Q ss_pred             EEEEcCCCcEEEEeCCCCCcccccceeee--eccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591          181 VYSASADGKIKAWGKELGKSHCHSLKGIL--EGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      .+.|+.+|.+++|+....+......+...  +......|+.+.|.|.. ..+++.+.|..|+|||.+......++.....
T Consensus       466 avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n  545 (712)
T KOG0283|consen  466 AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN  545 (712)
T ss_pred             EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc
Confidence            89999999999999988762211111110  01112246999999743 4688888999999999987743333333333


Q ss_pred             ccceeEEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591          258 AHEMAVLCVCLVGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      .....-.++..+|++|++++.|..|++|+...
T Consensus       546 ~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  546 TSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             CCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            33334455666899999999999999999743

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1e-30  Score=218.83  Aligned_cols=257  Identities=17%  Similarity=0.189  Sum_probs=190.8

Q ss_pred             EECCcEEEEEeCCCcEEEEeCCCceee-------------EEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccC
Q 018591           23 ALCGEFILSASQGKDIIVWQQPDLRMF-------------TKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        23 ~~~~~~l~s~~~dg~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      ++++..+++++.+.....|+...+..+             ..+.+|.+.|.+++|+   +++|++++.|++|++||+.+.
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~  108 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE  108 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence            345667788888877788875443322             2367899999999997   568999999999999999765


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeee
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLES  163 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~  163 (353)
                      ....     .                    .......+.+|...|.+++|+|   ++|++|+.|+.|++||+++++.+..
T Consensus       109 ~~~~-----~--------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~  163 (493)
T PTZ00421        109 GLTQ-----N--------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV  163 (493)
T ss_pred             cccc-----c--------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE
Confidence            3100     0                    0012334458999999999998   5899999999999999999999999


Q ss_pred             ccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec----CCCc
Q 018591          164 IKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG----SDGF  237 (353)
Q Consensus       164 ~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~  237 (353)
                      +..|...|.+++|++  ..+++++.|+.|++||+++++     ....+.+|.......+.|.+++..+++++    .|+.
T Consensus       164 l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        164 IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence            999999999999943  389999999999999999887     56677788765546788999877777654    4789


Q ss_pred             EEEeeccccccceeeeeecccc-ceeE--EEEEEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          238 VMGWEGNVEIVRWKLACETKAH-EMAV--LCVCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      |++||++.......   ....+ ...+  ..+.+++++|++++ .|+.|++||+.+++..... . ..+..++..++|.|
T Consensus       239 VklWDlr~~~~p~~---~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~-~-~~s~~~~~g~~~~p  313 (493)
T PTZ00421        239 IMLWDTRKMASPYS---TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS-S-YSSVEPHKGLCMMP  313 (493)
T ss_pred             EEEEeCCCCCCcee---EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe-e-ccCCCCCcceEecc
Confidence            99999987532221   11111 1222  33455688888877 5999999999987633221 1 23556788999998


Q ss_pred             C
Q 018591          314 N  314 (353)
Q Consensus       314 ~  314 (353)
                      .
T Consensus       314 k  314 (493)
T PTZ00421        314 K  314 (493)
T ss_pred             c
Confidence            6

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1e-31  Score=198.73  Aligned_cols=284  Identities=18%  Similarity=0.290  Sum_probs=223.7

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC------------c------eeeEEeccCceeeEEEEEe--C
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD------------L------RMFTKFGHGDGSVKAVVTV--G   66 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~--~   66 (353)
                      ...+..|+.++.+-+|+  |.++|+|+.|-.|+|.|++.            +      ..++++-.|...|+.+.|.  .
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            34677899999999996  99999999999999999761            1      2567788899999999998  7


Q ss_pred             CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591           67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG  144 (353)
Q Consensus        67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~  144 (353)
                      ..|++++.|++|+++|+........  ...                            .....+|.++.|+|  +++++|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA--~K~----------------------------~qd~~~vrsiSfHPsGefllvg  234 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRA--FKV----------------------------FQDTEPVRSISFHPSGEFLLVG  234 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHH--HHH----------------------------hhccceeeeEeecCCCceEEEe
Confidence            8899999999999999876541110  000                            13456899999999  899999


Q ss_pred             cCCCcEEEEEcCCceeeeec---cccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceee
Q 018591          145 SWDKTLKVWRVADLKCLESI---KAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLN  218 (353)
Q Consensus       145 ~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~  218 (353)
                      ..-..+++||+++.++...-   ..|.+.|+++.++  .++.++++.||.|++||--.++     +... -..|.+..|.
T Consensus       235 TdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-----Cv~t~~~AH~gsevc  309 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-----CVRTIGNAHGGSEVC  309 (430)
T ss_pred             cCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH-----HHHHHHhhcCCceee
Confidence            99999999999998876543   4688999999993  3489999999999999988776     4444 4568888889


Q ss_pred             EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc--ce---eEEEEEEc--CcEEEEec-CCCeEEEEecCCC
Q 018591          219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EM---AVLCVCLV--GEFLCSGS-ADKSIGIWKREAF  290 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~---~v~~~~~~--~~~l~~~~-~dg~i~iw~~~~~  290 (353)
                      +..|..+++++++.+.|..+++|.+.++.    ......+.  .+   --+...|+  ..+++.-. ..+.+.-||.++.
T Consensus       310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  310 SAVFTKNGKYILSSGKDSTVKLWEISTGR----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             eEEEccCCeEEeecCCcceeeeeeecCCc----eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence            99999999999999999999999999984    33333221  11   11112232  45555443 4678999999987


Q ss_pred             cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          291 GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       291 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      .....+  -.+|++.+..+.-+|.    +.-+++++.|-.+|+|--+
T Consensus       386 dr~~l~--slgHn~a~R~i~HSP~----~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  386 DRVALL--SLGHNGAVRWIVHSPV----EPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhc--ccCCCCCceEEEeCCC----CCceeeecccceeeeeeec
Confidence            743222  3589999999999999    8899999999999999644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.3e-31  Score=211.18  Aligned_cols=248  Identities=30%  Similarity=0.474  Sum_probs=205.2

Q ss_pred             EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      ..+.+|..+|.++.|+  ++++++++.||.+++|++.++..                                ...+..|
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~--------------------------------~~~~~~~   50 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL--------------------------------LRTLKGH   50 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc--------------------------------EEEEecC
Confidence            4567899999999998  58999999999999999987641                                1122268


Q ss_pred             CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccc
Q 018591          128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      ...+..+.|.+  +.+++++.||.|++||+.+++.+..+..|...+.++.+.+  ..+++++.++.+++||+++.+    
T Consensus        51 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  126 (289)
T cd00200          51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK----  126 (289)
T ss_pred             CcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE----
Confidence            88889999998  5899999999999999998888888888998999999944  466677779999999999766    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS  281 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~  281 (353)
                       ....+..|...+ .+++|+|++.++++++.++.+++||++..    +....+..|...+.++.++  ++.+++++.++.
T Consensus       127 -~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~  200 (289)
T cd00200         127 -CLTTLRGHTDWV-NSVAFSPDGTFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT  200 (289)
T ss_pred             -EEEEeccCCCcE-EEEEEcCcCCEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence             555666666655 99999999999999888999999999876    3444455677677777775  558999999999


Q ss_pred             EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      |++||+..++   .+..+..|...+.++.|+|+    +.++++++.||.|++|++.+++......
T Consensus       201 i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         201 IKLWDLSTGK---CLGTLRGHENGVNSVAFSPD----GYLLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             EEEEECCCCc---eecchhhcCCceEEEEEcCC----CcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence            9999998866   56667788899999999998    8899999999999999999776655443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4e-31  Score=199.29  Aligned_cols=241  Identities=15%  Similarity=0.253  Sum_probs=198.3

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      .++.....+.||++.|+++.|+  |.+||||+.+|.|+||+..++.....+...-..+.=+.|.  +..|++|+.||.+.
T Consensus        94 ~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvW  173 (399)
T KOG0296|consen   94 STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVW  173 (399)
T ss_pred             cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEE
Confidence            4677888999999999999996  9999999999999999999999998887555667777777  78999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      +|.+..+.                                ..+++.+|..++++=.|.|  +.++++..||+|++||+.+
T Consensus       174 mw~ip~~~--------------------------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt  221 (399)
T KOG0296|consen  174 MWQIPSQA--------------------------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT  221 (399)
T ss_pred             EEECCCcc--------------------------------eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC
Confidence            99998754                                1334448999999999999  8999999999999999999


Q ss_pred             ceeeeeccc---------------------------------------------------cCcceEEEEE---eCC--eE
Q 018591          158 LKCLESIKA---------------------------------------------------HDDAVNGLVA---SKG--IV  181 (353)
Q Consensus       158 ~~~~~~~~~---------------------------------------------------~~~~v~~i~~---~~~--~l  181 (353)
                      ++++..+..                                                   +...+.++.+   +..  +.
T Consensus       222 g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~  301 (399)
T KOG0296|consen  222 GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLA  301 (399)
T ss_pred             CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchh
Confidence            887766531                                                   0111112222   111  67


Q ss_pred             EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591          182 YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                      ++|+.||+|.|||+....      .+..-.|...+ ..+.|-+ ..+|++++.+|.|+.||.+++    .+.....+|..
T Consensus       302 A~G~vdG~i~iyD~a~~~------~R~~c~he~~V-~~l~w~~-t~~l~t~c~~g~v~~wDaRtG----~l~~~y~GH~~  369 (399)
T KOG0296|consen  302 ACGSVDGTIAIYDLAAST------LRHICEHEDGV-TKLKWLN-TDYLLTACANGKVRQWDARTG----QLKFTYTGHQM  369 (399)
T ss_pred             hcccccceEEEEecccch------hheeccCCCce-EEEEEcC-cchheeeccCceEEeeecccc----ceEEEEecCch
Confidence            888999999999998875      34444455554 8999998 789999999999999999999    67888899999


Q ss_pred             eEEEEEE--cCcEEEEecCCCeEEEEecC
Q 018591          262 AVLCVCL--VGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       262 ~v~~~~~--~~~~l~~~~~dg~i~iw~~~  288 (353)
                      .|.+++.  +.+++++++.|++.++|+..
T Consensus       370 ~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  370 GILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9988876  58899999999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=4.4e-31  Score=225.06  Aligned_cols=297  Identities=18%  Similarity=0.276  Sum_probs=229.6

Q ss_pred             ccCceEEEEEC--CcEEEEEe--CCCcEEEEeCCC------------ceeeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591           15 HVGSVSSLALC--GEFILSAS--QGKDIIVWQQPD------------LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~--~dg~v~vwd~~~------------~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      +...|.+++.+  |..++||+  .||.++||+.+.            .+.+.....|.+.|.|+.|+  |.+||+|++|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            45678999996  88999999  899999998542            23456667899999999998  89999999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      .|.+|......  .......            ..............++.+|...|..++|+|  .++++++.|++|.+||
T Consensus        92 ~v~iW~~~~~~--~~~~fgs------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   92 LVMIWERAEIG--SGTVFGS------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             eEEEeeecccC--Ccccccc------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence            99999987411  0000000            000011112234556679999999999999  8999999999999999


Q ss_pred             cCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-----CceeeEEEEcCCCC
Q 018591          155 VADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-----DVSLNSVVVSDDGK  227 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~  227 (353)
                      ..+.+.+..+++|.+.|..+.|.|  .+|++-+.|++|++|++.+-.     +.+....+.     ..-...+.|||||+
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~-----i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG-----IEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccce-----eeEeeccchhhCCCcceeeecccCCCcC
Confidence            999999999999999999999943  499999999999999976644     333333222     22247899999999


Q ss_pred             eEEeecC----CCcEEEeeccccccceeeeeeccccceeEEEEEEc-------Cc------------EEEEecCCCeEEE
Q 018591          228 WVYGGGS----DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-------GE------------FLCSGSADKSIGI  284 (353)
Q Consensus       228 ~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~------------~l~~~~~dg~i~i  284 (353)
                      +|++...    -..+.|.+..+    |+....+-+|..++.++.|+       .+            .+|+|+.|++|.|
T Consensus       233 ~las~nA~n~~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV  308 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV  308 (942)
T ss_pred             eecchhhccCCcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence            9998643    34677776644    46777888999999998885       12            6889999999999


Q ss_pred             EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      |.....+.+..+..+  ....|.+++|+||    |..|+.+|.||+|.+..+++.+
T Consensus       309 W~T~~~RPl~vi~~l--f~~SI~DmsWspd----G~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  309 WNTALPRPLFVIHNL--FNKSIVDMSWSPD----GFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EecCCCCchhhhhhh--hcCceeeeeEcCC----CCeEEEEecCCeEEEEEcchHH
Confidence            999776654334333  3567999999999    9999999999999999998753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-32  Score=197.15  Aligned_cols=245  Identities=23%  Similarity=0.294  Sum_probs=208.9

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      .+|.=+.+|.||.++|++...+  ....|+++.|-+-++||.-+|..+..+.+ ..-|.+++|+  .++|++|+.+..+|
T Consensus        47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk~~af~~ds~~lltgg~ekllr  125 (334)
T KOG0278|consen   47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQDSNYLLTGGQEKLLR  125 (334)
T ss_pred             CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheeeeEEecccchhhhccchHHHhh
Confidence            3566788999999999999997  55788999999999999999999998864 7789999998  78999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      ++|++..+..                               ...+.+|++.|..+.|..  +.+++++.|++|++||.++
T Consensus       126 vfdln~p~Ap-------------------------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT  174 (334)
T KOG0278|consen  126 VFDLNRPKAP-------------------------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT  174 (334)
T ss_pred             hhhccCCCCC-------------------------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc
Confidence            9999877632                               222238999999999987  8899999999999999999


Q ss_pred             ceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          158 LKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +..++++.. ..+|+++.+ +++.+++....+.|.+||..+-.     ++..+.....  |.+...+|+...+++|+.|.
T Consensus       175 gt~v~sL~~-~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~-----~lKs~k~P~n--V~SASL~P~k~~fVaGged~  246 (334)
T KOG0278|consen  175 GTEVQSLEF-NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG-----LLKSYKMPCN--VESASLHPKKEFFVAGGEDF  246 (334)
T ss_pred             CcEEEEEec-CCCCcceeeccCCCEEEEecCceeEEecccccc-----ceeeccCccc--cccccccCCCceEEecCcce
Confidence            999999864 788999999 67788888899999999999876     5555555443  58899999999999999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      .++.||..++...   ....++|.++|.|+.+  +|...++|+.||+|++|....++
T Consensus       247 ~~~kfDy~TgeEi---~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  247 KVYKFDYNTGEEI---GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             EEEEEeccCCcee---eecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9999999998422   2224889999988876  58999999999999999987655

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=8.3e-30  Score=214.43  Aligned_cols=260  Identities=12%  Similarity=0.165  Sum_probs=190.6

Q ss_pred             EEECCcEEEE------EeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           22 LALCGEFILS------ASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        22 ~~~~~~~l~s------~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      ++.++++++.      |+.++.|++|+......+..+.+|.+.|.+++|+   +++|++|+.||+|++||+.++....  
T Consensus        34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~--  111 (568)
T PTZ00420         34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV--  111 (568)
T ss_pred             EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc--
Confidence            4445555443      5678899999988888888999999999999998   4789999999999999997643110  


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDD  169 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  169 (353)
                        ..+                    ..+...+.+|...|.+++|+|   ..+++++.|+.|++||+++++.+..+. |..
T Consensus       112 --~~i--------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~  168 (568)
T PTZ00420        112 --KEI--------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK  168 (568)
T ss_pred             --ccc--------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence              000                    011223448999999999999   346789999999999999988777775 567


Q ss_pred             ceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce----eeEEEEcCCCCeEEeecCCC----cEE
Q 018591          170 AVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS----LNSVVVSDDGKWVYGGGSDG----FVM  239 (353)
Q Consensus       170 ~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~  239 (353)
                      .|.+++|+  +..|++++.|+.|++||+++++     ....+.+|.+..    +....|++++.++++++.|+    .|+
T Consensus       169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             cEEEEEECCCCCEEEEEecCCEEEEEECCCCc-----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence            89999993  3488888899999999999987     667778887643    12234568888999877764    799


Q ss_pred             EeeccccccceeeeeeccccceeEEEE-EE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCV-CL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      +||++...... .......+...+..+ .+ ++.++++|+.|+.|++|++..+. ...+..+. +..++.+++|.|+
T Consensus       244 LWDlr~~~~pl-~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pk  317 (568)
T PTZ00420        244 LWDLKNTTSAL-VTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPK  317 (568)
T ss_pred             EEECCCCCCce-EEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc-cCCCccceEEccc
Confidence            99998632111 111222233332222 22 37889999999999999998753 34454444 6788999999997

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-30  Score=202.52  Aligned_cols=284  Identities=21%  Similarity=0.335  Sum_probs=223.4

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee----EE-------------e-ccCceeeEEEEEe--C
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF----TK-------------F-GHGDGSVKAVVTV--G   66 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~--~   66 (353)
                      ...+..|.-+|.+++++  +.+.++++.||+|.-|+..+++..    ..             - ..|...+.+++.+  +
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            67788999999999996  789999999999999998877633    11             0 2677788888887  8


Q ss_pred             CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591           67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG  144 (353)
Q Consensus        67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~  144 (353)
                      .+|++|+.|..|.||+.++.+                                +...+.+|.+.|.+++|-.  +.++++
T Consensus       215 kylatgg~d~~v~Iw~~~t~e--------------------------------hv~~~~ghr~~V~~L~fr~gt~~lys~  262 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE--------------------------------HVKVFKGHRGAVSSLAFRKGTSELYSA  262 (479)
T ss_pred             cEEEecCCCceEEEecCcccc--------------------------------hhhcccccccceeeeeeecCccceeee
Confidence            999999999999999999876                                2334458999999999987  899999


Q ss_pred             cCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEE-EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591          145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVY-SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       145 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (353)
                      +.|+.|++|+++....+.++.+|...|.+|.. ....++ +|+.|+++++|++...      ....+.++.+.+ .+++|
T Consensus       263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee------sqlifrg~~~si-dcv~~  335 (479)
T KOG0299|consen  263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE------SQLIFRGGEGSI-DCVAF  335 (479)
T ss_pred             ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc------ceeeeeCCCCCe-eeEEE
Confidence            99999999999999999999999999999988 444555 5559999999999554      456677777666 89998


Q ss_pred             cCCCCeEEeecCCCcEEEeeccccccceeeeeec--------cccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc-
Q 018591          223 SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET--------KAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG-  291 (353)
Q Consensus       223 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~-  291 (353)
                      -.+ ..+++|+.+|.|.+|++...++.+.....-        ..++.++++++.  ..+++++|+.+|.|++|-+..+- 
T Consensus       336 In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  336 IND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             ecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            765 479999999999999998875443221111        111236666665  47899999999999999998762 


Q ss_pred             ceEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEEEEcC
Q 018591          292 KLCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~  337 (353)
                      .+.++..+. -.+.|++++|+++    |+ +++..+....+--|-..
T Consensus       415 ~i~~l~~ls-~~GfVNsl~f~~s----gk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  415 AINLLYSLS-LVGFVNSLAFSNS----GKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             ccceeeecc-cccEEEEEEEccC----CCEEEEecccccccceeeEe
Confidence            334555554 6788999999999    77 44555666666666543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-32  Score=219.25  Aligned_cols=282  Identities=19%  Similarity=0.337  Sum_probs=225.4

Q ss_pred             CccCceE---EEEEC---CcEEEEEeCCCcEEEEeCCCc------eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591           14 GHVGSVS---SLALC---GEFILSASQGKDIIVWQQPDL------RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus        14 ~h~~~v~---~~~~~---~~~l~s~~~dg~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      .|...|.   .+..+   +++|+|||.||.|++|+...-      ..+..+++|...|+.+...  ++.|++++.|-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3555566   44444   778999999999999997532      2467889999999998876  77999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE-eC--CeEEEecCCCcEEEEEcC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV-YN--GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--~~l~~~~~dg~v~iwd~~  156 (353)
                      +|+......   .++.                           .+..|...|.|+++ .+  ..+++|+.|+.|.+||++
T Consensus        99 ~W~~~~~~~---~c~s---------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   99 VWNAHKDNT---FCMS---------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             EeecccCcc---hhHh---------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence            999876641   1222                           22379999999999 44  899999999999999999


Q ss_pred             Cce--eee--------ecc-ccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591          157 DLK--CLE--------SIK-AHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       157 ~~~--~~~--------~~~-~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                      ++.  .+.        .+. ++..+|++++.++.  .+++|+.++.|++||.++.+     ....+.+|...+ ..+..+
T Consensus       149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-----kimkLrGHTdNV-r~ll~~  222 (735)
T KOG0308|consen  149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-----KIMKLRGHTDNV-RVLLVN  222 (735)
T ss_pred             CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc-----ceeeeeccccce-EEEEEc
Confidence            762  222        223 77889999999665  89999999999999999988     667788999987 999999


Q ss_pred             CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      +||..+++++.||+|++||+...    ++..++..|...+.++..+  -.++++|+.||.|..=|+++......+.   .
T Consensus       223 dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---k  295 (735)
T KOG0308|consen  223 DDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---K  295 (735)
T ss_pred             CCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee---c
Confidence            99999999999999999999987    6677778888888888765  5689999999999999999865433333   2


Q ss_pred             CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ...+|..+.....    .+-+-+++.|+.|+-|..+....+
T Consensus       296 ~daPv~~l~~~~~----~~~~WvtTtds~I~rW~~~~~~~l  332 (735)
T KOG0308|consen  296 EDAPVLKLHLHEH----DNSVWVTTTDSSIKRWKLEPDIAL  332 (735)
T ss_pred             CCCchhhhhhccc----cCCceeeeccccceecCCcccccc
Confidence            4567888888765    444577788999999987755433

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.4e-30  Score=199.37  Aligned_cols=273  Identities=20%  Similarity=0.288  Sum_probs=227.0

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      ..+.++...  ...+++|+.|..+.++|.++++.+..+++|...|..+.++  ...+++++.|-.|++|.......    
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~----  295 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE----  295 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----
Confidence            467777775  3899999999999999999999999999999999999998  56789999999999999876552    


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc--cC
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA--HD  168 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~  168 (353)
                                                  ......|..+|+.+..+|  ++|++++.||+..+.|++++.++.....  ..
T Consensus       296 ----------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~  347 (506)
T KOG0289|consen  296 ----------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD  347 (506)
T ss_pred             ----------------------------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc
Confidence                                        122237999999999999  9999999999999999999988776643  23


Q ss_pred             cceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          169 DAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       169 ~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      -.+++.+|+++  .|.+|..||.+++||+..+.     ....+.+|.+.+ ..++|+.+|-+|++++.|+.|++||++..
T Consensus       348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-----~~a~Fpght~~v-k~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-----NVAKFPGHTGPV-KAISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-----ccccCCCCCCce-eEEEeccCceEEEEEecCCeEEEEEehhh
Confidence            45889999444  77889999999999999887     678889988876 99999999999999999999999999987


Q ss_pred             ccceeeeeeccc-cceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591          247 IVRWKLACETKA-HEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY  323 (353)
Q Consensus       247 ~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~  323 (353)
                      .    ....+.. ....+.++++  +|.+|+.++.|=.|++++-.+ +.+.++..+..|.+..+.+.|...    .++++
T Consensus       422 ~----n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~----aq~l~  492 (506)
T KOG0289|consen  422 K----NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEH----AQYLA  492 (506)
T ss_pred             c----ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeeccc----ceEEe
Confidence            3    2222221 1224555555  499999998887777777544 455678888889999999999998    89999


Q ss_pred             EccCCCeEEEEEc
Q 018591          324 SGSLDKSLRVWWV  336 (353)
Q Consensus       324 s~~~dg~i~iw~~  336 (353)
                      ++|.|..++++.+
T Consensus       493 s~smd~~l~~~a~  505 (506)
T KOG0289|consen  493 STSMDAILRLYAL  505 (506)
T ss_pred             eccchhheEEeec
Confidence            9999999998865

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-30  Score=192.39  Aligned_cols=261  Identities=18%  Similarity=0.293  Sum_probs=202.0

Q ss_pred             CCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~   80 (353)
                      +..++..+..|.++|+++|.++.++|+||.|-+|+|||++....+..+-.|.+.|+++.|.    .+.|++|+.||.|.+
T Consensus        32 ~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   32 TLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             eeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            4456788999999999999999999999999999999999999999999999999999998    237999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      |+...-.     ++.++.                           +|.+.|+.++.+|  .+.++.+.|+.+++||+-++
T Consensus       112 w~~~~W~-----~~~slK---------------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen  112 WRVGSWE-----LLKSLK---------------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             EEcCCeE-----Eeeeec---------------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence            9986643     444443                           7999999999999  77778899999999999888


Q ss_pred             eeeeeccccCcceEEEEE-e-CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVA-S-KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +.-..++- ...-+.+.| + +++++.+.. ..|-+|.+.+..     +........ . +.++.|. ++..+++|..|+
T Consensus       160 r~a~v~~L-~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~-----v~~~i~~~~-r-~l~~~~l-~~~~L~vG~d~~  229 (362)
T KOG0294|consen  160 RVAFVLNL-KNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNAS-----VFREIENPK-R-ILCATFL-DGSELLVGGDNE  229 (362)
T ss_pred             ccceeecc-CCcceeeEEcCCCCEEEEEec-cEEEEEecccHh-----Hhhhhhccc-c-ceeeeec-CCceEEEecCCc
Confidence            76544432 222334778 3 336666665 468999988776     333333331 1 2455554 466899999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEc----CcEEEEecCCCeEEEEecCCCc--ceEEeccccCCCcCeEEEE
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFG--KLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~  310 (353)
                      .|.+||....    .+...+.+|...|-.+.+-    +.+|++++.||.|++||++...  ++..+..+.. ...++|+.
T Consensus       230 ~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~  304 (362)
T KOG0294|consen  230 WISLKDTDSD----TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLR  304 (362)
T ss_pred             eEEEeccCCC----ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceee
Confidence            9999999986    6778889999999988852    5799999999999999998652  2223333332 44566665


Q ss_pred             ee
Q 018591          311 AS  312 (353)
Q Consensus       311 ~~  312 (353)
                      ..
T Consensus       305 ~~  306 (362)
T KOG0294|consen  305 VK  306 (362)
T ss_pred             eh
Confidence            44

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=4.2e-30  Score=213.11  Aligned_cols=336  Identities=17%  Similarity=0.227  Sum_probs=226.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCc
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSR   77 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~   77 (353)
                      .++++.+.+++++.+.|+++.-+  =+.+|.|..+|+|.++|+..++.+.++++..+.|++++|.  | ..+++++..|.
T Consensus       189 vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~  268 (910)
T KOG1539|consen  189 VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD  268 (910)
T ss_pred             eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce
Confidence            57899999999999999999887  5789999999999999999999999999877999999997  4 46778888899


Q ss_pred             EEEEEcccCccceeEE-ee--------ccccccceeeeecccceeEeec------ccceeeeeecCCceEEEEEeC---C
Q 018591           78 IRVWKVSRSSENVFRL-VD--------TLPTTKDYLGKFMKQSNYVQTR------RHHKRLWIEHADSISCLTVYN---G  139 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~---~  139 (353)
                      +.+||++......... ..        .++..........+........      .+..+.-.||..+-.|+.|..   .
T Consensus       269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            9999998876211111 00        0111111111111110000000      011222235666666666654   5


Q ss_pred             eEEEecCCCcEEEEEcCCceeeeeccc------------------cCcceEEEEEe-------CCeEEEEcCCCcEEEEe
Q 018591          140 LIYSGSWDKTLKVWRVADLKCLESIKA------------------HDDAVNGLVAS-------KGIVYSASADGKIKAWG  194 (353)
Q Consensus       140 ~l~~~~~dg~v~iwd~~~~~~~~~~~~------------------~~~~v~~i~~~-------~~~l~~~~~dg~i~iwd  194 (353)
                      .+.+++.|++.+.+++.....-+.+..                  .-.+|..+++.       ++.+...-.+..++.|+
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence            566666666666666554444333210                  01234444441       12344444455566666


Q ss_pred             CCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc
Q 018591          195 KELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE  271 (353)
Q Consensus       195 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  271 (353)
                      .++.......+... ++. ....+++++.++.|++.+.|+..|.|-+|+++++.....+ .....|..+|+.++.|  ++
T Consensus       429 ~~n~~~G~~~L~~~~~~~-~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-~~~~ah~~~V~gla~D~~n~  506 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKK-DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-GDSPAHKGEVTGLAVDGTNR  506 (910)
T ss_pred             ccCcccccEEecCccccc-cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc-ccCccccCceeEEEecCCCc
Confidence            66554211111111 111 2334589999999999999999999999999998432222 1235789999999998  67


Q ss_pred             EEEEecCCCeEEEEecCCCcce--------------------------------------EEeccccCCCcCeEEEEeec
Q 018591          272 FLCSGSADKSIGIWKREAFGKL--------------------------------------CRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~~~--------------------------------------~~~~~~~~h~~~v~~~~~~~  313 (353)
                      .+++++.+|.+.+||.......                                      ..++.+.||.+.|++++|||
T Consensus       507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence            8999999999999998764310                                      23455789999999999999


Q ss_pred             CCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      |    |++|++++.|++|++||+.++.++.-
T Consensus       587 D----grWlisasmD~tIr~wDlpt~~lID~  613 (910)
T KOG1539|consen  587 D----GRWLISASMDSTIRTWDLPTGTLIDG  613 (910)
T ss_pred             C----CcEEEEeecCCcEEEEeccCcceeee
Confidence            9    99999999999999999999887653

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=6.8e-31  Score=203.48  Aligned_cols=259  Identities=19%  Similarity=0.201  Sum_probs=207.4

Q ss_pred             CccCceEEEEE---CCcEEEEEeCCCcEEEEeCCCce----------eeEEeccCceeeEEEEEe---CCEEEEecCCCc
Q 018591           14 GHVGSVSSLAL---CGEFILSASQGKDIIVWQQPDLR----------MFTKFGHGDGSVKAVVTV---GNKVFTAHQDSR   77 (353)
Q Consensus        14 ~h~~~v~~~~~---~~~~l~s~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~   77 (353)
                      -|.+.|+.+.+   +...+|+++..+.|.|||..+..          +-..+.+|...=++++|+   ...|++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            48888888888   37789999999999999975421          223677888877889998   678999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEE
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd  154 (353)
                      |++||+.......                         ....+...+.+|...|..++|++   +++++++.|+.+.|||
T Consensus       202 i~lwdi~~~~~~~-------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD  256 (422)
T KOG0264|consen  202 ICLWDINAESKED-------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD  256 (422)
T ss_pred             EEEEeccccccCC-------------------------ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEE
Confidence            9999998765210                         00123556679999999999998   8999999999999999


Q ss_pred             cC--CceeeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCe
Q 018591          155 VA--DLKCLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKW  228 (353)
Q Consensus       155 ~~--~~~~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~  228 (353)
                      ++  +.++.....+|.++|+|++|+   +..||+|+.|++|++||+|+..    .+...+.+|...+ ..+.|+|. ...
T Consensus       257 ~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh~~e~H~dev-~~V~WSPh~etv  331 (422)
T KOG0264|consen  257 TRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLHTFEGHEDEV-FQVEWSPHNETV  331 (422)
T ss_pred             cCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCceeccCCCcce-EEEEeCCCCCce
Confidence            99  566777788999999999993   3489999999999999999887    3788899999887 99999996 568


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC  308 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~  308 (353)
                      |++++.|+.+.+||+..-.....                                 ++-.....+..+..-.||...|..
T Consensus       332 LASSg~D~rl~vWDls~ig~eq~---------------------------------~eda~dgppEllF~HgGH~~kV~D  378 (422)
T KOG0264|consen  332 LASSGTDRRLNVWDLSRIGEEQS---------------------------------PEDAEDGPPELLFIHGGHTAKVSD  378 (422)
T ss_pred             eEecccCCcEEEEeccccccccC---------------------------------hhhhccCCcceeEEecCccccccc
Confidence            88999999999999875311000                                 111122334456667899999999


Q ss_pred             EEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          309 LQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       309 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      +.|+|..   -..++|+++|+.+.||+...
T Consensus       379 fsWnp~e---PW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  379 FSWNPNE---PWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccCCCCC---CeEEEEecCCceEEEeeccc
Confidence            9999983   46899999999999999873

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=1.6e-30  Score=187.64  Aligned_cols=250  Identities=20%  Similarity=0.274  Sum_probs=208.6

Q ss_pred             EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      +.+.+|...+.+++|+  |..|++|+.|+++++|+++...     .....                         ...+|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~-------------------------~~~gh   63 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKEL-------------------------VYRGH   63 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----hhhhh-------------------------cccCC
Confidence            4567788999999998  9999999999999999998763     21111                         12389


Q ss_pred             CCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccc
Q 018591          128 ADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       128 ~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      .+.|-.++|+|   +.+++++.|..|++||++++++...+....+.+.-... +++++++++.|..|.+.|.++.+    
T Consensus        64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~----  139 (313)
T KOG1407|consen   64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYK----  139 (313)
T ss_pred             CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccc----
Confidence            99999999988   89999999999999999999999998776666654444 44599999999999999999876    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS  281 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~  281 (353)
                       .....+..  ..+..++|+.++.+++.....|.|.|.....-    ++...+..|+....|+.++  |+++|+|+.|-.
T Consensus       140 -~~~~~~~~--~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL----kpv~si~AH~snCicI~f~p~GryfA~GsADAl  212 (313)
T KOG1407|consen  140 -IVNEEQFK--FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL----KPVQSIKAHPSNCICIEFDPDGRYFATGSADAL  212 (313)
T ss_pred             -eeehhccc--ceeeeeeecCCCCEEEEecCCceEEEEecccc----ccccccccCCcceEEEEECCCCceEeeccccce
Confidence             33333222  22478889988888888888899999988765    7888889999998888776  999999999999


Q ss_pred             EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      +.+||++..-   +++.+..+.-+|+.+.|+.+    |++||+||+|..|-|=+++++..+.+.+-
T Consensus       213 vSLWD~~ELi---C~R~isRldwpVRTlSFS~d----g~~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  213 VSLWDVDELI---CERCISRLDWPVRTLSFSHD----GRMLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             eeccChhHhh---hheeeccccCceEEEEeccC----cceeeccCccceEEeEecccCCeEEEeec
Confidence            9999998544   77788889999999999999    99999999999999999999988877663

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=6.6e-31  Score=187.81  Aligned_cols=251  Identities=20%  Similarity=0.275  Sum_probs=198.5

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---eeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEE
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---RMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w   81 (353)
                      .-.+|.+.|..+..+  |++|||++.|++|+|+.....   +++.++.+|+++|..++|.    |++|++++.||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            345799999998876  999999999999999997653   5788999999999999996    8999999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~  157 (353)
                      .-+++.-   ..                           ...+..|...|++++|.|    -.|++++.||.|.+.+.+.
T Consensus        86 ke~~g~w---~k---------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~  135 (299)
T KOG1332|consen   86 KEENGRW---TK---------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS  135 (299)
T ss_pred             ecCCCch---hh---------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence            9877641   11                           112237999999999998    5789999999999999875


Q ss_pred             c---eeeeeccccCcceEEEEEeC----------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591          158 L---KCLESIKAHDDAVNGLVASK----------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       158 ~---~~~~~~~~~~~~v~~i~~~~----------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                      .   ...+....|.-.|++++|.|                ..|++|+.|..|+||+..+++   ......+++|.+.+ +
T Consensus       136 ~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---w~~e~~l~~H~dwV-R  211 (299)
T KOG1332|consen  136 SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---WKLERTLEGHKDWV-R  211 (299)
T ss_pred             CCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---hhhhhhhhhcchhh-h
Confidence            4   23344578999999999922                259999999999999998864   23456689999987 9


Q ss_pred             EEEEcCCC----CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591          219 SVVVSDDG----KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       219 ~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      .++|.|.-    .++++++.||++.||..+.....++.. .+......+..++|  .|+.|++++.|+.|.+|.-+...+
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t-ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk  290 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT-LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK  290 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc-ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence            99999963    579999999999999887543333322 22224455555555  599999999999999998665544


Q ss_pred             eEEe
Q 018591          293 LCRV  296 (353)
Q Consensus       293 ~~~~  296 (353)
                      ..++
T Consensus       291 w~~v  294 (299)
T KOG1332|consen  291 WEEV  294 (299)
T ss_pred             EEEc
Confidence            4443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=1.4e-28  Score=174.44  Aligned_cols=290  Identities=18%  Similarity=0.272  Sum_probs=227.9

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---------------eeeEEeccCceeeEEEEEe--CC
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---------------RMFTKFGHGDGSVKAVVTV--GN   67 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~--~~   67 (353)
                      +.+..|. .+.+|.+++|+  |.+.+.|+...+.||-.....               -..+.-++|.+.|+|.+|+  |+
T Consensus        24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence            3444444 46789999997  889999999999998754321               1223447899999999998  99


Q ss_pred             EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC------CeE
Q 018591           68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------GLI  141 (353)
Q Consensus        68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l  141 (353)
                      .+++|+.|.+|++...+.......                           .+...+.-|.+.|..++|..      ..|
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~---------------------------g~dle~nmhdgtirdl~fld~~~s~~~il  155 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNAT---------------------------GHDLEFNMHDGTIRDLAFLDDPESGGAIL  155 (350)
T ss_pred             eEEecCCCceEEEEeccccccccc---------------------------CcceeeeecCCceeeeEEecCCCcCceEE
Confidence            999999999999987765431110                           11222336999999999965      455


Q ss_pred             EEe-cCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee------ccC
Q 018591          142 YSG-SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE------GHK  213 (353)
Q Consensus       142 ~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~  213 (353)
                      +++ ..|..|++-|..+++..+.+.+|.+.|.++-- ++-++++|+.|.+|++||++-..     ....+.      +-.
T Consensus       156 ~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~gle  230 (350)
T KOG0641|consen  156 ASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLE  230 (350)
T ss_pred             EecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCcc
Confidence            554 45778888899999999999999999998865 77799999999999999998765     333332      222


Q ss_pred             CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591          214 DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      ...|.+++..|.|++|++|-.|....+||++.+    ..++.+..|...+.|+.++  ..++++++.|..|++-|++..-
T Consensus       231 ssavaav~vdpsgrll~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             cceeEEEEECCCcceeeeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence            345699999999999999999999999999999    7888889999999998887  5699999999999999987531


Q ss_pred             -ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          292 -KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       292 -~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                       ....+.....|...+..+.|.|.    .-.+++.+.|.++.+|-+.
T Consensus       307 a~el~~~vv~ehkdk~i~~rwh~~----d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  307 AHELPIMVVAEHKDKAIQCRWHPQ----DFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhcCceEEEEeccCceEEEEecCc----cceeeeccCcceEEEeccC
Confidence             11122334568899999999998    7889999999999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.98  E-value=6e-30  Score=188.02  Aligned_cols=286  Identities=16%  Similarity=0.236  Sum_probs=214.6

Q ss_pred             eeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCce------e----eEE-----eccCceeeEEEEEe---CCEE
Q 018591           11 VLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLR------M----FTK-----FGHGDGSVKAVVTV---GNKV   69 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~------~----~~~-----~~~~~~~v~~~~~~---~~~l   69 (353)
                      .-+.|.+.|+++.++   |+++++|+.||.|.+||++...      .    ...     -.+|.-.|..+.|-   ...+
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            345688999999997   9999999999999999987532      1    111     13567788888875   6788


Q ss_pred             EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEEe
Q 018591           70 FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYSG  144 (353)
Q Consensus        70 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~  144 (353)
                      .+++.|.++++||.++.++     ...+                            ...+.|.+-+++|     -++++|
T Consensus       118 tssSFDhtlKVWDtnTlQ~-----a~~F----------------------------~me~~VYshamSp~a~sHcLiA~g  164 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQE-----AVDF----------------------------KMEGKVYSHAMSPMAMSHCLIAAG  164 (397)
T ss_pred             ecccccceEEEeeccccee-----eEEe----------------------------ecCceeehhhcChhhhcceEEEEe
Confidence            9999999999999988762     1111                            2344555556665     578889


Q ss_pred             cCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCc----------ccccceeeeec
Q 018591          145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKS----------HCHSLKGILEG  211 (353)
Q Consensus       145 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~  211 (353)
                      ..|-.|++-|+.+|.+...+.+|.+.|.++.|++.   .|++|+.||.|++||++....          ...+....-..
T Consensus       165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a  244 (397)
T KOG4283|consen  165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA  244 (397)
T ss_pred             cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccc
Confidence            99999999999999999999999999999999554   789999999999999986521          11112222344


Q ss_pred             cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce---eEEEEEEcCcEEEEecCCCeEEEEecC
Q 018591          212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM---AVLCVCLVGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~~dg~i~iw~~~  288 (353)
                      |.+.+ ..++|+.++.++++.+.|..+++|+...+....+..........   .+.--+.+...++---.++.+.++++-
T Consensus       245 h~gkv-ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~  323 (397)
T KOG4283|consen  245 HYGKV-NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL  323 (397)
T ss_pred             cccee-eeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc
Confidence            55554 99999999999999999999999999887543332222111111   111112223333333456889999999


Q ss_pred             CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      .+.   .+..+..|-..|.+.++.|+    -+.+.+|+.|+.|..|-..
T Consensus       324 sgs---~ir~l~~h~k~i~c~~~~~~----fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  324 EGS---FVRRLSTHLKRINCAAYRPD----FEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             Cce---EEEeeecccceeeEEeecCc----hhhhhccccCCcccccccc
Confidence            888   67778889889999999999    8899999999999999864

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=2.3e-29  Score=211.74  Aligned_cols=202  Identities=18%  Similarity=0.176  Sum_probs=153.4

Q ss_pred             eeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce--------eeeeccccCcceEEEEEeCC---eEEEEcCCCc
Q 018591          124 WIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK--------CLESIKAHDDAVNGLVASKG---IVYSASADGK  189 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~  189 (353)
                      +.+|.+.|.+++|+|   ++|++|+.|+.|++||+.++.        ++..+.+|...|.+++|++.   .+++++.|++
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence            348999999999998   689999999999999997532        34467889999999999553   5678999999


Q ss_pred             EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE--E--
Q 018591          190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--C--  265 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~--  265 (353)
                      |++||+++++     ....+. +.. .|.+++|+|+|.+|++++.|+.|++||++++    .....+.+|...+.  .  
T Consensus       150 IrIWDl~tg~-----~~~~i~-~~~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i~tl~gH~g~~~s~~v~  218 (568)
T PTZ00420        150 VNIWDIENEK-----RAFQIN-MPK-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIASSFHIHDGGKNTKNIW  218 (568)
T ss_pred             EEEEECCCCc-----EEEEEe-cCC-cEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEEEEEecccCCceeEEEE
Confidence            9999999886     333343 333 3599999999999999999999999999987    44455666765432  1  


Q ss_pred             ---EEEcCcEEEEecCCC----eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          266 ---VCLVGEFLCSGSADK----SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       266 ---~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                         +.+++.+|++++.|+    .|+|||+++...+.....+..+.+.+......++    +.++++|+.|+.|++|++..
T Consensus       219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t----g~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST----GLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC----CCEEEEEECCCeEEEEEccC
Confidence               224677888877664    7999999965443333334444454444444455    88999999999999999976


Q ss_pred             CC
Q 018591          339 QS  340 (353)
Q Consensus       339 ~~  340 (353)
                      +.
T Consensus       295 ~~  296 (568)
T PTZ00420        295 GS  296 (568)
T ss_pred             Cc
Confidence            53

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.6e-28  Score=182.26  Aligned_cols=255  Identities=16%  Similarity=0.168  Sum_probs=196.4

Q ss_pred             ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      .+..+.+..-.+.|.++.|+  |..+++++.|.++++||...+.     .+.++.                         
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-----~~~ti~-------------------------   53 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-----QVKTIN-------------------------   53 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-----eeeEee-------------------------
Confidence            34445555567899999998  8999999999999999998876     222221                         


Q ss_pred             eeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCC
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~  197 (353)
                        .+.-.+..+.|..  +.++.++.  |.+|+..++.+.+.++.+.+|...|++++.+  ++.+++++.|++|++||++.
T Consensus        54 --skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~  131 (311)
T KOG1446|consen   54 --SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV  131 (311)
T ss_pred             --cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence              3334555566654  66666666  8899999999999999999999999999994  35999999999999999997


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc-cc--ceeEEEEEEcCcEEE
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK-AH--EMAVLCVCLVGEFLC  274 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~--~~~v~~~~~~~~~l~  274 (353)
                      .+     +...+.....   ..++|+|+|-++|++...+.|++||++.-.........+. ..  +-.-..++++|++|+
T Consensus       132 ~~-----cqg~l~~~~~---pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL  203 (311)
T KOG1446|consen  132 KK-----CQGLLNLSGR---PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL  203 (311)
T ss_pred             CC-----CceEEecCCC---cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence            76     5555544443   5689999999999999888999999987532211111222 22  334456666799999


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCCCcC---eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGHEGP---VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      .+...+.+++.|.-+|.   .+..+.++...   -....|+||    ++++++|+.||+|.+|+++++..+.....
T Consensus       204 lsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPd----s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  204 LSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPD----SKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             EEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeEEECCC----CcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence            99999999999999988   44444444332   267789999    99999999999999999999988876654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-30  Score=185.63  Aligned_cols=249  Identities=19%  Similarity=0.270  Sum_probs=198.8

Q ss_pred             ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc
Q 018591           53 GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS  130 (353)
Q Consensus        53 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (353)
                      ..|...|..+..+  |.+|++++.|++|+|+..+.+..  ..++                           ..+.+|.++
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--s~ll---------------------------~~L~Gh~GP   58 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--SKLL---------------------------AELTGHSGP   58 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--ceee---------------------------eEecCCCCC
Confidence            4577777776555  99999999999999999987653  1122                           233489999


Q ss_pred             eEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCc
Q 018591          131 ISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       131 i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      |..++|..    ..|++++.||.|.||.-.+++  .......|...|++++|.+.    .|++++.||.|.+.+.+... 
T Consensus        59 Vwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-  137 (299)
T KOG1332|consen   59 VWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-  137 (299)
T ss_pred             eeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-
Confidence            99999965    899999999999999987764  34455789999999999433    89999999999999987662 


Q ss_pred             ccccceeeeeccCCceeeEEEEcCC---C-----------CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDD---G-----------KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV  266 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  266 (353)
                       ..........|.-.+ ++++|.|-   |           +.|++|+.|..|+||+....  .+.....+.+|...+..+
T Consensus       138 -~w~t~ki~~aH~~Gv-nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDV  213 (299)
T KOG1332|consen  138 -GWTTSKIVFAHEIGV-NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDV  213 (299)
T ss_pred             -Cccchhhhhcccccc-ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhh
Confidence             112344556677666 99999985   4           56999999999999999887  566667789999999888


Q ss_pred             EEc------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          267 CLV------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       267 ~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      ++.      ..+||+++.||+|.||..+..........++.....+..+.||+.    |++|+.++.|+.|.+|.-...
T Consensus       214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s----Gn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS----GNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc----ccEEEEecCCcEEEEEEeCCC
Confidence            775      348999999999999988754333344445556788999999999    999999999999999975544

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=2.5e-29  Score=210.62  Aligned_cols=249  Identities=14%  Similarity=0.159  Sum_probs=181.7

Q ss_pred             EEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--
Q 018591           61 AVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--  138 (353)
Q Consensus        61 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  138 (353)
                      ..+|++..+++++.+.....|+...+.     .+..+....              ........+.+|.+.|.+++|+|  
T Consensus        27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~-----~v~~~~~~G--------------~~~~~~~~l~GH~~~V~~v~fsP~d   87 (493)
T PTZ00421         27 TALWDCSNTIACNDRFIAVPWQQLGST-----AVLKHTDYG--------------KLASNPPILLGQEGPIIDVAFNPFD   87 (493)
T ss_pred             cccCCCCCcEeECCceEEEEEecCCce-----EEeeccccc--------------cCCCCCceEeCCCCCEEEEEEcCCC
Confidence            344556778888888888888865542     110000000              00011234558999999999998  


Q ss_pred             -CeEEEecCCCcEEEEEcCCc-------eeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          139 -GLIYSGSWDKTLKVWRVADL-------KCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       139 -~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                       ++|++|+.|+.|++||+.++       +++..+.+|...|.+++|++   +.|++++.|++|++||+++++     ...
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-----~~~  162 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-----AVE  162 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-----EEE
Confidence             68999999999999999764       35677889999999999943   489999999999999999886     566


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE---EEEEEcCcEEEEec----CCC
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV---LCVCLVGEFLCSGS----ADK  280 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~----~dg  280 (353)
                      .+..|...+ .+++|+|++.+|++++.|+.|++||++++    .....+..|....   ..+.+++..+++++    .|+
T Consensus       163 ~l~~h~~~V-~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr  237 (493)
T PTZ00421        163 VIKCHSDQI-TSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR  237 (493)
T ss_pred             EEcCCCCce-EEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence            777787765 99999999999999999999999999987    3444555565432   22333455665543    479


Q ss_pred             eEEEEecCCCcceEEeccccC-CCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcCCCCCccc
Q 018591          281 SIGIWKREAFGKLCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       281 ~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~  344 (353)
                      .|++||+++...+  +..... +...+....|+++    +.+|++++ .|+.|++||+.+++....
T Consensus       238 ~VklWDlr~~~~p--~~~~~~d~~~~~~~~~~d~d----~~~L~lggkgDg~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        238 QIMLWDTRKMASP--YSTVDLDQSSALFIPFFDED----TNLLYIGSKGEGNIRCFELMNERLTFC  297 (493)
T ss_pred             eEEEEeCCCCCCc--eeEeccCCCCceEEEEEcCC----CCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence            9999999876542  222222 3345666778998    88888887 599999999998876543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-29  Score=187.43  Aligned_cols=295  Identities=17%  Similarity=0.211  Sum_probs=208.5

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee------EEeccCceeeEEEEEe---CCEEEEecCCCc
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF------TKFGHGDGSVKAVVTV---GNKVFTAHQDSR   77 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~------~~~~~~~~~v~~~~~~---~~~l~s~~~dg~   77 (353)
                      +.+|+||.+.|++++|+  |++|+|++.|++|++|++.+.+..      ..++  -+--+.+.|.   ...++++-...+
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCE
Confidence            46789999999999995  999999999999999998764321      1111  1233455665   456777777779


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      +++|.+...+........ .+.                   .+...-..|+..+..+-...  .++++++.|..|.+|++
T Consensus       157 l~vyk~~K~~dG~~~~~~-v~~-------------------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l  216 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHF-VHI-------------------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL  216 (420)
T ss_pred             EEEEEeeecccCCCCccc-ccc-------------------cccccchhcccceEEEeecCCceEEEEecCCCcEEEEec
Confidence            999988765432111100 000                   00111124666676666655  89999999999999999


Q ss_pred             CCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCC---CCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          156 ADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKE---LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      + |+.+..+......-+..+.+|+  ++++++..-.+++|.+-   ++..+.......+.+|...+ ..++|+++...++
T Consensus       217 k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV-~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  217 K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAV-LAAAFSNSSTRAV  294 (420)
T ss_pred             C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhe-eeeeeCCCcceeE
Confidence            7 8888888766666666666443  88888888899999863   33323333455788999887 9999999999999


Q ss_pred             eecCCCcEEEeeccccccc---eeeeeec------cccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          231 GGGSDGFVMGWEGNVEIVR---WKLACET------KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~~~~---~~~~~~~------~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      +.+.||++++||..-.-..   .+.....      .+...--..++|+|+.|+.+.. ..+++|..++++....+  -..
T Consensus       295 tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~--e~~  371 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPEL--EDI  371 (420)
T ss_pred             EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhH--HHh
Confidence            9999999999998653111   1111111      1122234677888988887654 56999999988754333  246


Q ss_pred             CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      |...|.+++|+++    |+++++++ |..+++..
T Consensus       372 h~~~Is~is~~~~----g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  372 HSTTISSISYSSD----GKYIATCG-DRYVRVIR  400 (420)
T ss_pred             hcCceeeEEecCC----CcEEeeec-ceeeeeec
Confidence            8999999999999    99999997 66788876

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.8e-29  Score=204.31  Aligned_cols=244  Identities=20%  Similarity=0.238  Sum_probs=207.7

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEeCCEEEEecCCCcEEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTVGNKVFTAHQDSRIRVW   81 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~~w   81 (353)
                      +++.......+.+.|+++.|+  |++|+.|..+|.|.|||..+.+.+..+.+ |...|.+++|.+..+.+|+.|+.|..+
T Consensus       206 s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~  285 (484)
T KOG0305|consen  206 SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNH  285 (484)
T ss_pred             CCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEE
Confidence            344444444558999999996  99999999999999999999999999988 999999999999999999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      |++..+....                               .+.+|...|..+.|++  .++++|+.|+.+.|||....+
T Consensus       286 dvR~~~~~~~-------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  286 DVRISQHVVS-------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             EEecchhhhh-------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence            9987762111                               1338999999999999  899999999999999998889


Q ss_pred             eeeeccccCcceEEEEE---eCCeEEEEc--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe--e
Q 018591          160 CLESIKAHDDAVNGLVA---SKGIVYSAS--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG--G  232 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~---~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~  232 (353)
                      +...+..|...|.+++|   ..+.||+|+  .|+.|++||..++.     .+...  ..+..|.++.|++..+.|++  |
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----~i~~v--dtgsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-----RIDSV--DTGSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-----Eeccc--ccCCceeeEEEcCCCCEEEEecC
Confidence            99999999999999999   456888875  49999999999887     33333  23344699999999877766  4


Q ss_pred             cCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591          233 GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       233 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      ..++.|.||+..+.    +....+.+|...|..++.  +|..+++|+.|.++++|++-..
T Consensus       408 ~s~n~i~lw~~ps~----~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  408 YSENQITLWKYPSM----KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCcEEEEecccc----ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            56778999999886    778888999999988766  5899999999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=196.81  Aligned_cols=262  Identities=26%  Similarity=0.359  Sum_probs=209.2

Q ss_pred             eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      +..+..|.-++.+++++  +.+.++++.+|+|.-|++.++....+..-..     ....     ..+...  ...+  .+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k-----~~~~~~--k~~r--~~  200 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLK-----SHGNPL--KESR--KG  200 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-----hhhh-----hccCCC--Cccc--cc
Confidence            56677888999999988  7799999999999999998886321111110     0000     000000  0011  37


Q ss_pred             cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591          127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      |...+.+++.++  .+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|  ..+.+++++.|+++++|+++...   
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s---  277 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS---  277 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---
Confidence            999999999999  89999999999999999999999999999999999999  45599999999999999999887   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-cCcEEEEecCCCe
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGSADKS  281 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~  281 (353)
                        ...++.+|++.+ ..+....-++.+.+|+.|+++++|++...     ....+.++...+-|+++ +...+++|+.||.
T Consensus       278 --~vetlyGHqd~v-~~IdaL~reR~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In~~HfvsGSdnG~  349 (479)
T KOG0299|consen  278 --YVETLYGHQDGV-LGIDALSRERCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFINDEHFVSGSDNGS  349 (479)
T ss_pred             --HHHHHhCCccce-eeechhcccceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEecccceeeccCCce
Confidence              788899999887 88888888888888999999999999554     34455677888888887 6889999999999


Q ss_pred             EEEEecCCCcceEEecccc---------CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          282 IGIWKREAFGKLCRVGAIT---------GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      |.+|++...+.+.....-.         .+..+|++++..|.    .+++++|+.+|.|++|.++++
T Consensus       350 IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~----sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  350 IALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG----SDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EEEeeecccCceeEeeccccccCCccccccccceeeeEeccc----CceEEecCCCCceEEEEecCC
Confidence            9999998866432221111         12238999999999    899999999999999999987

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.2e-29  Score=184.62  Aligned_cols=256  Identities=16%  Similarity=0.185  Sum_probs=191.1

Q ss_pred             ccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC
Q 018591           53 GHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD  129 (353)
Q Consensus        53 ~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (353)
                      ......|.+|+|+   ...+++++.||+||+|+++....    ...                          +....|.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----~~~--------------------------ka~~~~~~   73 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----LVP--------------------------KAQQSHDG   73 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCc----ccc--------------------------hhhhccCC
Confidence            3457789999998   46677999999999999987421    100                          11127999


Q ss_pred             ceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--C--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591          130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--G--IVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~--~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      +|.+++|+.  ..+++|+.|+.+++||+.++ .+..+..|..+|.++.|-+  +  .|++|+.|.+|++||.+...    
T Consensus        74 PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----  148 (347)
T KOG0647|consen   74 PVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----  148 (347)
T ss_pred             CeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC----
Confidence            999999998  89999999999999999998 5566778999999999922  2  78999999999999999876    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEE
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIG  283 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~  283 (353)
                       +...+.-..    .+.+.+-...+++++..++.|.+|+++.+..+.+.....-.......++..+....+.|+-+|.+.
T Consensus       149 -pv~t~~LPe----RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  149 -PVATLQLPE----RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             -eeeeeeccc----eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence             444444433    233333335578889999999999998875544444333333444455555666679999999999


Q ss_pred             EEecCCCcceEEeccccCCCc---------CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc-CCCcccC
Q 018591          284 IWKREAFGKLCRVGAITGHEG---------PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE-EKSIISC  353 (353)
Q Consensus       284 iw~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~c  353 (353)
                      |..++.+.+ ..-..++-|..         +|++|+|+|.    ...|+|+|.||+..+||-.....+.+.+ ....+.|
T Consensus       224 iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~----hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc  298 (347)
T KOG0647|consen  224 IQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV----HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC  298 (347)
T ss_pred             EEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecc----cceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence            999987532 12233444442         5888999998    8899999999999999999888887755 3444443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.1e-29  Score=205.15  Aligned_cols=288  Identities=16%  Similarity=0.164  Sum_probs=217.9

Q ss_pred             eeeeCccCceEEEEE---C----------CcEEEEEeCCCcEEEEeCCCceeeEEe------------------------
Q 018591           10 AVLSGHVGSVSSLAL---C----------GEFILSASQGKDIIVWQQPDLRMFTKF------------------------   52 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~---~----------~~~l~s~~~dg~v~vwd~~~~~~~~~~------------------------   52 (353)
                      ..+-.|...|+.+.-   +          ..-++|++.|++||+||+..+..-..+                        
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD  442 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence            455568888888864   1          346899999999999998753110000                        


Q ss_pred             -------------ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591           53 -------------GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR  117 (353)
Q Consensus        53 -------------~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (353)
                                   -.....+.+++.+  +++|++|..-|.+++|++...+.                             
T Consensus       443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----------------------------  493 (1080)
T KOG1408|consen  443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-----------------------------  493 (1080)
T ss_pred             ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-----------------------------
Confidence                         0123467888887  89999999999999999977652                             


Q ss_pred             ccceeeeeecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE--eC--CeEEEEcCC
Q 018591          118 RHHKRLWIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA--SK--GIVYSASAD  187 (353)
Q Consensus       118 ~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~--~~--~~l~~~~~d  187 (353)
                         ......|..+|.|+.|+.     .+|++++.|..|++||... ..+++++.+|...|+++.|  ++  -.+++++.|
T Consensus       494 ---~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD  570 (1080)
T KOG1408|consen  494 ---TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD  570 (1080)
T ss_pred             ---hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence               111227999999999986     7899999999999999864 5677889999999999999  33  288999999


Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE--E
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--C  265 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~  265 (353)
                      ..|.+--.+...... ...+....-....+..++..|+.+++++++.|..|+||+++.++....+ ..-..|.+...  .
T Consensus       571 ksimFr~~qk~~~g~-~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F-Kgs~~~eG~lIKv~  648 (1080)
T KOG1408|consen  571 KSIMFRVNQKASSGR-LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF-KGSRDHEGDLIKVI  648 (1080)
T ss_pred             hhhheehhccccCce-eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee-cccccCCCceEEEE
Confidence            877653332111000 0111111112233588999999999999999999999999998433222 22234444444  4


Q ss_pred             EEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          266 VCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       266 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      +.|+|.|+++...|.++.++|..+++   ++..+.||...|+.+.|.+|    -+.|++.+.||.|.||.+..
T Consensus       649 lDPSgiY~atScsdktl~~~Df~sgE---cvA~m~GHsE~VTG~kF~nD----CkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  649 LDPSGIYLATSCSDKTLCFVDFVSGE---CVAQMTGHSEAVTGVKFLND----CKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ECCCccEEEEeecCCceEEEEeccch---hhhhhcCcchheeeeeeccc----chhheeecCCceEEEEECch
Confidence            45679999999999999999999998   89999999999999999999    99999999999999999875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=3.1e-29  Score=193.32  Aligned_cols=248  Identities=19%  Similarity=0.229  Sum_probs=206.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRI   78 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i   78 (353)
                      .++.+.+.+|+||+..|+.+.|+  ...+++++.|-.|+||.............|..+|+.+...  ++||++++.||+.
T Consensus       248 ~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w  327 (506)
T KOG0289|consen  248 KPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTW  327 (506)
T ss_pred             cchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceE
Confidence            46788899999999999999997  6789999999999999998888888889999999999887  9999999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~  156 (353)
                      .+.|++++..-......                              ...-.+++..|+|  ..+.+|..||.|++||+.
T Consensus       328 ~Fsd~~~g~~lt~vs~~------------------------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  328 AFSDISSGSQLTVVSDE------------------------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             EEEEccCCcEEEEEeec------------------------------cccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            99999887621111000                              1223589999999  677889999999999999


Q ss_pred             CceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591          157 DLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS  234 (353)
Q Consensus       157 ~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  234 (353)
                      ++..+..|.+|.++|..+.|++|  +|++++.|+.|++||++..+     ....+.......+.++.|.+.|.+|+.++.
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEEEcCCCCeEEeecc
Confidence            99999999999999999999444  89999999999999999887     555555555545699999999999999977


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~  287 (353)
                      |=.|++++  .....|.....+..|.+...++.+.  .+++++++.|..++++.+
T Consensus       453 ~l~Vy~~~--k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  453 DLQVYICK--KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeEEEEEe--cccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            75555554  4444677888888888888888885  789999999999888764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=188.67  Aligned_cols=251  Identities=22%  Similarity=0.321  Sum_probs=209.4

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe------CCCc---------------------------
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ------QPDL---------------------------   46 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd------~~~~---------------------------   46 (353)
                      .+++++++.++.||.+.|++++|+  +.++++++.|++-.||.      +...                           
T Consensus       176 s~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~  255 (481)
T KOG0300|consen  176 SLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK  255 (481)
T ss_pred             eeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc
Confidence            357899999999999999999996  88999999999999997      2110                           


Q ss_pred             -------eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591           47 -------RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR  117 (353)
Q Consensus        47 -------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (353)
                             .++..+.+|.+.|.+..|-  ++.+++++.|.+..+||+++++     .+                       
T Consensus       256 sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-----~v-----------------------  307 (481)
T KOG0300|consen  256 SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-----VV-----------------------  307 (481)
T ss_pred             cCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-----ee-----------------------
Confidence                   1455677888889888886  8899999999999999999987     33                       


Q ss_pred             ccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEE
Q 018591          118 RHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAW  193 (353)
Q Consensus       118 ~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iw  193 (353)
                          ..+.+|..+.+.++-+|  .++++++.|.+.++||.+. -..+..|++|...|++..| .++.+++|+.|.+|++|
T Consensus       308 ----~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvW  383 (481)
T KOG0300|consen  308 ----NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVW  383 (481)
T ss_pred             ----ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEe
Confidence                33348999999999999  7889999999999999974 3456788999999999999 67799999999999999


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC---
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG---  270 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---  270 (353)
                      |+++.+    .++..+...  .+++.++.+..+..++.-..+..|++||++.......+.....+|..-++|.+|..   
T Consensus       384 dLrNMR----splATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  384 DLRNMR----SPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             eecccc----CcceeeecC--CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence            999876    344444433  33589999999999999999999999999987554445556678999999999963   


Q ss_pred             -cEEEEecCCCeEEEEecCCC
Q 018591          271 -EFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       271 -~~l~~~~~dg~i~iw~~~~~  290 (353)
                       .-|++++.|..+.-|++...
T Consensus       458 ~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  458 ACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccccccceeeeeEeccc
Confidence             35788999999999998754

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.1e-28  Score=197.76  Aligned_cols=311  Identities=17%  Similarity=0.211  Sum_probs=229.4

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w   81 (353)
                      .+-..++||++.|.+|..+  |.+|++|+.||+|+||.+.+|.++.++.. .+.|.+++|+   ...++++.....+.+-
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence            3456789999999999996  99999999999999999999999998876 5689999998   2334444444456666


Q ss_pred             EcccCccc----eeEEeeccccccc---eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC---CCc
Q 018591           82 KVSRSSEN----VFRLVDTLPTTKD---YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW---DKT  149 (353)
Q Consensus        82 ~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~---dg~  149 (353)
                      +..-+...    ...++...+....   ..........  .......++...|...|..+.|+.  ++|++...   ...
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~--~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASL--DELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhh--hhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            54433110    1111111111111   0111111100  011122566778999999999998  88887654   357


Q ss_pred             EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          150 LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      |.|.++.......-|+...+.|.++.|++.  +|++++. ..|++||+....     +...+...... +..++++|.|.
T Consensus       548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqe-----lvKkL~tg~kw-iS~msihp~GD  620 (733)
T KOG0650|consen  548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQE-----LVKKLLTGSKW-ISSMSIHPNGD  620 (733)
T ss_pred             EEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHH-----HHHHHhcCCee-eeeeeecCCCC
Confidence            899999877777777677889999999555  5655554 689999998765     44444444444 49999999999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc--EEEEecCCCeEEEEe------cCCCcceEEeccc
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE--FLCSGSADKSIGIWK------REAFGKLCRVGAI  299 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~iw~------~~~~~~~~~~~~~  299 (353)
                      .|+.|+.|+.+..||+.-..   ++...+..|...+++++++++  ++++|+.||++.||-      +.....+.++..+
T Consensus       621 nli~gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L  697 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL  697 (733)
T ss_pred             eEEEecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence            99999999999999998764   566778889999999999854  799999999999984      3223345677888


Q ss_pred             cCCCcC----eEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          300 TGHEGP----VKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       300 ~~h~~~----v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      .+|...    |....|+|.    ..+|++++.||+|++|
T Consensus       698 ~gH~~~~~~gVLd~~wHP~----qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  698 RGHEKTNDLGVLDTIWHPR----QPWLFSAGADGTIRLF  732 (733)
T ss_pred             cCceeecccceEeecccCC----CceEEecCCCceEEee
Confidence            999876    999999999    8899999999999998

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=6.4e-30  Score=195.79  Aligned_cols=238  Identities=20%  Similarity=0.335  Sum_probs=193.7

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-C-CEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-G-NKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~-~~l~s~~~dg~i~~w   81 (353)
                      ...+.+|.|-.++|+++.|+  +..+++++.|+.+++|++.+.+...++.+|+..|+++.|. + ..+++|+.|.+|+.|
T Consensus       209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW  288 (459)
T ss_pred             hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence            34667888888999999996  8899999999999999999999999999999999999997 3 349999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  161 (353)
                      |+....     +..+.                            -....+..|...+..+++|-.|+.|++||.++..+.
T Consensus       289 Dl~k~~-----C~kt~----------------------------l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~  335 (459)
T KOG0288|consen  289 DLQKAY-----CSKTV----------------------------LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKT  335 (459)
T ss_pred             hhhhhh-----eeccc----------------------------cccccccceEecceeeeecccccceEEEeccCCcee
Confidence            998754     32222                            122345566666778899999999999999999999


Q ss_pred             eeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---CceeeEEEEcCCCCeEEeecCCC
Q 018591          162 ESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---DVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       162 ~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      .....+. .|+++..  ....+++++.|.++.+.|+++.+     +...+....   ..-.+.+.|||++.|+++|+.||
T Consensus       336 ~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e-----I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg  409 (459)
T KOG0288|consen  336 RSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE-----IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG  409 (459)
T ss_pred             eEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc-----EEEEeeccccccccccceeEECCCCceeeeccCCC
Confidence            9987754 9999998  33388888999999999999887     444443321   12248899999999999999999


Q ss_pred             cEEEeeccccccceeeeeecccc--ceeEEEEEEc--CcEEEEecCCCeEEEEe
Q 018591          237 FVMGWEGNVEIVRWKLACETKAH--EMAVLCVCLV--GEFLCSGSADKSIGIWK  286 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~~~~~dg~i~iw~  286 (353)
                      .|+||++.+++    +...+...  ...|++++|+  |..|++++.++.+.+|.
T Consensus       410 sv~iW~v~tgK----lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  410 SVYIWSVFTGK----LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cEEEEEccCce----EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999984    33333332  2358888886  89999999999999993

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2e-29  Score=198.56  Aligned_cols=265  Identities=20%  Similarity=0.249  Sum_probs=196.1

Q ss_pred             eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      ....+.+|+..|.+++++  |..|++|+.|-+|++||+......... ...+                          ..
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l--------------------------~P  211 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQL--------------------------QP  211 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hhcc--------------------------Cc
Confidence            345678899999999998  899999999999999999865421111 1111                          11


Q ss_pred             ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee------------ccccCcceEEEEEeC---CeEEEEcCCC
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES------------IKAHDDAVNGLVASK---GIVYSASADG  188 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~~v~~i~~~~---~~l~~~~~dg  188 (353)
                      .....|+++.|++  +.|++.+.....+++|-.-.+....            -++|...++|.+|+|   +.+++++.||
T Consensus       212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence            4556789999998  8888888888999999543332222            257889999999944   3899999999


Q ss_pred             cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce--eEEEE
Q 018591          189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM--AVLCV  266 (353)
Q Consensus       189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~  266 (353)
                      ++|+||+...+.....+.....+....++++++|+|++++||+|+.||.|.+|+....... ........|..  .++|+
T Consensus       292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi  370 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSI  370 (641)
T ss_pred             cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEE
Confidence            9999999887744433444444444555699999999999999999999999998554221 12223344554  66666


Q ss_pred             EE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCC--CcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEc
Q 018591          267 CL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWV  336 (353)
Q Consensus       267 ~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~  336 (353)
                      .|  +|++|++-+.|+++++||++..+++  +....+-  .-+-+.++|||+    .+++++|+.      .|.+.+||.
T Consensus       371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkp--L~~~tgL~t~~~~tdc~FSPd----~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKP--LNVRTGLPTPFPGTDCCFSPD----DKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             EeccccchhhhccCCCceeeeeccccccc--hhhhcCCCccCCCCccccCCC----ceEEEecccccCCCCCceEEEEec
Confidence            66  5999999999999999999987763  3333332  335688999999    899999864      578999998


Q ss_pred             CCCCCccccc
Q 018591          337 SKQSSTSDSE  346 (353)
Q Consensus       337 ~~~~~~~~~~  346 (353)
                      .+.+.++.+.
T Consensus       445 ~t~d~v~ki~  454 (641)
T KOG0772|consen  445 MTLDTVYKID  454 (641)
T ss_pred             cceeeEEEec
Confidence            8877666543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6e-29  Score=190.72  Aligned_cols=255  Identities=18%  Similarity=0.229  Sum_probs=204.3

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      +..+.+..|...|+.+.|+  |++||+++.|.+..+|++.....  +++..                           .+
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~---------------------------tl  265 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKK---------------------------TL  265 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeee---------------------------ee
Confidence            3445678899999999998  99999999999999999876653  33333                           33


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc-cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCC
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA-HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~  199 (353)
                      .+|..+|.-+.|+|  +++++++.|..+.+||..++.+...+.. +...+.+.+| +++ .+++|+.|+++..||+....
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~  345 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI  345 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence            48999999999999  8999999999999999999998887743 4678999999 444 89999999999999998663


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEE--EEEcCcEEEEec
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLC--VCLVGEFLCSGS  277 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~  277 (353)
                            ...+++-....|.+++.++||+++++.+.|..|++|+.+......     ......++++  ++-+++++++--
T Consensus       346 ------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  346 ------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             ------hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----cccccCceeEEEEcCCCcEEEEEc
Confidence                  556666666667999999999999999999999999988752211     1222334444  455688999999


Q ss_pred             CCCeEEEEecCCCcceEEeccccCCCcC--eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITGHEGP--VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      .+..+++||++...   .+..+.||...  |-.-+|.-.   +..++++||+|+.|+||+..+++.+.....
T Consensus       415 ~~qei~LWDl~e~~---lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  415 QDQEIHLWDLEENK---LVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             ccCeeEEeecchhh---HHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEEccCCceeEeecC
Confidence            99999999999665   67778888764  333345433   158999999999999999999999887653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=7.3e-29  Score=201.86  Aligned_cols=245  Identities=21%  Similarity=0.308  Sum_probs=205.7

Q ss_pred             ceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      -++.+.+.+|...|..++.. +..++++|+||++++|+-..++     .+.                         ...+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~-----~l~-------------------------~~~~   53 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQ-----YLE-------------------------THAF   53 (745)
T ss_pred             ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcc-----ccc-------------------------ceec
Confidence            35667889999999998887 6779999999999999986654     111                         1112


Q ss_pred             eecCCceEE-EEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCC
Q 018591          125 IEHADSISC-LTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       125 ~~~~~~i~~-~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~  199 (353)
                      .+|.+-|.. +++.+   ..+++|+.|..+.+|...+..+...+++|...|.+++. .+..+++||.|.++++|....  
T Consensus        54 ~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--  131 (745)
T KOG0301|consen   54 EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--  131 (745)
T ss_pred             ccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--
Confidence            256666666 77765   67999999999999999999999999999999999997 666799999999999998765  


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecC
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSA  278 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~  278 (353)
                           +...+.+|+..+ .+++.-|++ .+++|+.|.+|++|.-.      +....+.+|...|..+..- +..+++++.
T Consensus       132 -----l~~~l~gH~asV-WAv~~l~e~-~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~~~flScsN  198 (745)
T KOG0301|consen  132 -----LVYSLQGHTASV-WAVASLPEN-TYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDDSHFLSCSN  198 (745)
T ss_pred             -----hhcccCCcchhe-eeeeecCCC-cEEeccCcceeeeccCC------chhhhhccchhheeeeEEecCCCeEeecC
Confidence                 445689999887 899988887 78999999999999873      5677889999999999884 669999999


Q ss_pred             CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ||.|++|++ +++   .+.++.+|+.-|.++...++    +..++++++|++++||+..  .+.+.+
T Consensus       199 Dg~Ir~w~~-~ge---~l~~~~ghtn~vYsis~~~~----~~~Ivs~gEDrtlriW~~~--e~~q~I  255 (745)
T KOG0301|consen  199 DGSIRLWDL-DGE---VLLEMHGHTNFVYSISMALS----DGLIVSTGEDRTLRIWKKD--ECVQVI  255 (745)
T ss_pred             CceEEEEec-cCc---eeeeeeccceEEEEEEecCC----CCeEEEecCCceEEEeecC--ceEEEE
Confidence            999999999 445   78888999999999997777    7899999999999999987  444433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-28  Score=192.86  Aligned_cols=239  Identities=17%  Similarity=0.286  Sum_probs=191.1

Q ss_pred             eeeeeCccCceEEEEE--CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEc
Q 018591            9 LAVLSGHVGSVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~   83 (353)
                      .+++.--.+.|+++.|  +|++||+|...|.|+|+|..+...+..+..|+.+|..+.|+   +..+++|+.|+.+++||+
T Consensus        61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~  140 (487)
T KOG0310|consen   61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL  140 (487)
T ss_pred             hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence            3344445678999999  49999999999999999988877888999999999999987   678899999999999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc-e
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL-K  159 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~-~  159 (353)
                      .+...     ..                           .+.+|++.|.|.+++|   ..+++|+.||.|++||++.. .
T Consensus       141 s~a~v-----~~---------------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~  188 (487)
T KOG0310|consen  141 STAYV-----QA---------------------------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS  188 (487)
T ss_pred             CCcEE-----EE---------------------------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence            87651     11                           1228999999999999   58999999999999999987 5


Q ss_pred             eeeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          160 CLESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      .+.++ .|..+|..+.+ +++ .+++++ ...+++||+.++.    ........|...+ +|+.+..++..|++++-|+.
T Consensus       189 ~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~----qll~~~~~H~KtV-TcL~l~s~~~rLlS~sLD~~  261 (487)
T KOG0310|consen  189 RVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGG----QLLTSMFNHNKTV-TCLRLASDSTRLLSGSLDRH  261 (487)
T ss_pred             eeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCc----eehhhhhcccceE-EEEEeecCCceEeecccccc
Confidence            66666 58999999999 554 555555 5689999999766    2444555577765 99999999999999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCc
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      +++||+.+-    +...... .++++.+++  ++++.++.|..||.+.+=+....+
T Consensus       262 VKVfd~t~~----Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  262 VKVFDTTNY----KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             eEEEEccce----EEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence            999997654    4444333 355666554  457999999999988877554433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.7e-29  Score=202.93  Aligned_cols=304  Identities=22%  Similarity=0.294  Sum_probs=228.5

Q ss_pred             eeeeeeCccCceEEEEE--CCcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEE
Q 018591            8 SLAVLSGHVGSVSSLAL--CGEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRV   80 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~   80 (353)
                      .+..++.|.+.|+.++.  +++.|+++|.|-+|++|+...+  -+..++..|...|.|+++.   ...+++||-|+.|.+
T Consensus        65 ~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl  144 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL  144 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence            47788999999999988  3889999999999999998876  5778889999999999993   678999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||++++...   .+..+.....                  ...-.++..+|.+++.++  ..+++|+..+.+++||.++.
T Consensus       145 WDin~~~~~---l~~s~n~~t~------------------~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~  203 (735)
T KOG0308|consen  145 WDINTGTAT---LVASFNNVTV------------------NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC  203 (735)
T ss_pred             EEccCcchh---hhhhcccccc------------------ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence            999987531   1111111000                  000117889999999999  58999999999999999999


Q ss_pred             eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +.+..+++|...|.++..++  ..+++++.||+|++||+...+     ++..+..|...+ .++..+|+-..+++|+.||
T Consensus       204 ~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr-----Cl~T~~vH~e~V-WaL~~~~sf~~vYsG~rd~  277 (735)
T KOG0308|consen  204 KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR-----CLATYIVHKEGV-WALQSSPSFTHVYSGGRDG  277 (735)
T ss_pred             cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc-----eeeeEEeccCce-EEEeeCCCcceEEecCCCC
Confidence            99999999999999999933  399999999999999999887     888899999985 9999999999999999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCC------------
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGH------------  302 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h------------  302 (353)
                      .|..=|+++.. ....++.   ...++..+..+  .+-+-+++.|+.|+-|...-.-.+..-..+..+            
T Consensus       278 ~i~~Tdl~n~~-~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~  353 (735)
T KOG0308|consen  278 NIYRTDLRNPA-KSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLT  353 (735)
T ss_pred             cEEecccCCch-hheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcccccc
Confidence            99999998852 1122222   12233333332  334467778888888875432111000000000            


Q ss_pred             ---------CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          303 ---------EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       303 ---------~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                               ..+|..-+...|    .+.++|=...|.+.+||+-....+.++.
T Consensus       354 ~tp~~vi~Gg~ai~k~~mL~d----kRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  354 NTPDSVIPGGAAIKKHAMLND----KRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             CCCceeccCchhhhhhhhhcC----cceEeeecCCCCEEEEEeeeeeehhhcc
Confidence                     112333344444    7899999999999999998776665554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-27  Score=175.33  Aligned_cols=262  Identities=17%  Similarity=0.223  Sum_probs=194.9

Q ss_pred             eCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC----ceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEEE
Q 018591           13 SGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD----LRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus        13 ~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w~   82 (353)
                      .+|.+-|.++.|+  |+.+|+++.|++|+|||..+    ..+....+.|.+.|..+.|.    |+.+++++.|++++||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            4799999999997  99999999999999999643    34667788999999999996    89999999999999998


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCc
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~  158 (353)
                      -.........                       ..-.....+......|+.+.|.|    -.+++++.||.++||+....
T Consensus        90 E~~~~~~~~~-----------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp  146 (361)
T KOG2445|consen   90 EQEKSEEAHG-----------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP  146 (361)
T ss_pred             eccccccccc-----------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence            6322210000                       00011223336778999999999    57899999999999987542


Q ss_pred             ------eeeeecc-------ccCcceEEEEEeCC-----eEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCc
Q 018591          159 ------KCLESIK-------AHDDAVNGLVASKG-----IVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDV  215 (353)
Q Consensus       159 ------~~~~~~~-------~~~~~v~~i~~~~~-----~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~  215 (353)
                            ....+++       .+..+..|+.|++.     +|+.|+.+     +.++||....... .......+.+|...
T Consensus       147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-Kw~kva~L~d~~dp  225 (361)
T KOG2445|consen  147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-KWLKVAELPDHTDP  225 (361)
T ss_pred             cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-eeeeehhcCCCCCc
Confidence                  2233333       45677888998443     67777765     4788997765542 22234556677776


Q ss_pred             eeeEEEEcCC----CCeEEeecCCCcEEEeecccc----------------ccceeeeeeccccceeEEEEEEc--CcEE
Q 018591          216 SLNSVVVSDD----GKWVYGGGSDGFVMGWEGNVE----------------IVRWKLACETKAHEMAVLCVCLV--GEFL  273 (353)
Q Consensus       216 ~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~~~~~~v~~~~~~--~~~l  273 (353)
                      + +.++|.|+    -..|++++.|| |+||.+...                ....+.+..+..|...+..+.|+  |..|
T Consensus       226 I-~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL  303 (361)
T KOG2445|consen  226 I-RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL  303 (361)
T ss_pred             c-eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence            6 99999996    35799999999 999998741                12335566778899999999997  9999


Q ss_pred             EEecCCCeEEEEecCCCcceEEecccc
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAIT  300 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~  300 (353)
                      ++.+.||.||+|...-..+..++..++
T Consensus       304 sStGdDG~VRLWkany~n~~kC~sv~~  330 (361)
T KOG2445|consen  304 SSTGDDGCVRLWKANYNNLWKCTSVLK  330 (361)
T ss_pred             eecCCCceeeehhhhhhhhheeeeEEe
Confidence            999999999999876555544554444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.1e-28  Score=187.81  Aligned_cols=276  Identities=17%  Similarity=0.269  Sum_probs=206.1

Q ss_pred             EEeCC-CcEEEEeCCCceeeEEeccC-ceeeEEEE-EeCCEEEEecC-CCcEEEEEcccCccceeEEeeccccccceeee
Q 018591           31 SASQG-KDIIVWQQPDLRMFTKFGHG-DGSVKAVV-TVGNKVFTAHQ-DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK  106 (353)
Q Consensus        31 s~~~d-g~v~vwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  106 (353)
                      +++.| .++.+||+.+|.....+++. ...-.++. ..+.+++++.. ...+.+|.+.........              
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~--------------   77 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY--------------   77 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh--------------
Confidence            33444 45999999999999888765 22222222 23567776653 347899998765421100              


Q ss_pred             ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEE
Q 018591          107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVY  182 (353)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~  182 (353)
                                        .--.++|.++.-+|  .+++.|+..|.|++|.+.+|..+..+.+|-..|+++.|.  +.+++
T Consensus        78 ------------------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii  139 (476)
T KOG0646|consen   78 ------------------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII  139 (476)
T ss_pred             ------------------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE
Confidence                              13456899999988  555555599999999999999999999999999999993  33999


Q ss_pred             EEcCCCcEEEEeCCCC----CcccccceeeeeccCCceeeEEEEcCC--CCeEEeecCCCcEEEeeccccccceeeeeec
Q 018591          183 SASADGKIKAWGKELG----KSHCHSLKGILEGHKDVSLNSVVVSDD--GKWVYGGGSDGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       183 ~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                      +|+.||.|.+|.+.+.    ......+...+..|.-++ +.+...+.  ..++++++.|.++++||+..+.......   
T Consensus       140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI-TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~---  215 (476)
T KOG0646|consen  140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI-TDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT---  215 (476)
T ss_pred             ecCCCccEEEEEEEeecccccCCCccceeeeccCccee-EEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe---
Confidence            9999999999986421    111334677888888776 88888764  4689999999999999999984322221   


Q ss_pred             cccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc-------------eEEeccccCCCc--CeEEEEeecCCCCCCeE
Q 018591          257 KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK-------------LCRVGAITGHEG--PVKCLQASPNAVGGGFL  321 (353)
Q Consensus       257 ~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~  321 (353)
                      .........++|.+..+++|+.+|.|.+.++.....             ...+..+.||.+  +|+|++.+-|    |.+
T Consensus       216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D----gtl  291 (476)
T KOG0646|consen  216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD----GTL  291 (476)
T ss_pred             cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC----ccE
Confidence            122233344555589999999999999988764331             123455778988  9999999999    999


Q ss_pred             EEEccCCCeEEEEEcCCCCCccccc
Q 018591          322 LYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       322 l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      |++|+.||+|+|||+.+.+++.+..
T Consensus       292 LlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  292 LLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             EEeeCCCCCEEEEecchHHHHHHHh
Confidence            9999999999999999999888766

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=183.59  Aligned_cols=250  Identities=22%  Similarity=0.318  Sum_probs=199.4

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      ..-+.|..|+  +++|++|+.||.|.+|+..+++..     ..+..                   .....+.-+..+|.|
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr-----KDLkY-------------------QAqd~fMMmd~aVlc  268 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-----KDLKY-------------------QAQDNFMMMDDAVLC  268 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhh-----hhhhh-------------------hhhcceeecccceEE
Confidence            3445666676  899999999999999999887621     11110                   011122357889999


Q ss_pred             EEEeC--CeEEEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591          134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  208 (353)
                      +.|+.  .++++|+.||.|++|.+++|.|++.|. +|...|+|+.|  .+..+++++.|.++++.-++.++     +...
T Consensus       269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-----~LKE  343 (508)
T KOG0275|consen  269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-----CLKE  343 (508)
T ss_pred             EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-----hHHH
Confidence            99998  899999999999999999999999996 89999999999  34499999999999999999998     8999


Q ss_pred             eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE---cCcEEEEecCCCeEEEE
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL---VGEFLCSGSADKSIGIW  285 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iw  285 (353)
                      +++|...+ +...|.++|..+++++.||+|++|+.++..+...+..  .+...++..+.+   +...++++...++|+|.
T Consensus       344 frGHsSyv-n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~--~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  344 FRGHSSYV-NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP--LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             hcCccccc-cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC--CCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence            99999987 9999999999999999999999999998843322211  123444555443   57789999999999999


Q ss_pred             ecCCCcceEEeccc---cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          286 KREAFGKLCRVGAI---TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       286 ~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ++.. +   .++.+   +...+...+...+|.    |.++.+.++|+.++.+.+.+++...+.
T Consensus       421 n~qG-Q---vVrsfsSGkREgGdFi~~~lSpk----GewiYcigED~vlYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  421 NMQG-Q---VVRSFSSGKREGGDFINAILSPK----GEWIYCIGEDGVLYCFSVLSGKLERTL  475 (508)
T ss_pred             eccc-e---EEeeeccCCccCCceEEEEecCC----CcEEEEEccCcEEEEEEeecCceeeee
Confidence            9874 3   33333   233455677789999    999999999999999999988765543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.8e-27  Score=173.69  Aligned_cols=251  Identities=18%  Similarity=0.267  Sum_probs=193.9

Q ss_pred             ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc
Q 018591           53 GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS  130 (353)
Q Consensus        53 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (353)
                      .+|..-|.++.|+  |+++++|+.|++++|||.+... ..+.+                           ...|..|.+.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-~~W~~---------------------------Ts~Wrah~~S   61 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-GTWSC---------------------------TSSWRAHDGS   61 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-CceEE---------------------------eeeEEecCCc
Confidence            4678889999998  9999999999999999985443 12222                           2345589999


Q ss_pred             eEEEEEeC----CeEEEecCCCcEEEEEcC---------CceeeeeccccCcceEEEEEeCC----eEEEEcCCCcEEEE
Q 018591          131 ISCLTVYN----GLIYSGSWDKTLKVWRVA---------DLKCLESIKAHDDAVNGLVASKG----IVYSASADGKIKAW  193 (353)
Q Consensus       131 i~~~~~~~----~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iw  193 (353)
                      |..+.|.+    +.+++++.|+++.||.-.         ......++......|+.+.|.+.    .+++++.||.+|||
T Consensus        62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY  141 (361)
T KOG2445|consen   62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY  141 (361)
T ss_pred             EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence            99999976    889999999999999752         11234455666889999999444    89999999999999


Q ss_pred             eCCCCCc-ccccceeeee-------ccCCceeeEEEEcCC---CCeEEeecCC-----CcEEEeeccccccceeeeeecc
Q 018591          194 GKELGKS-HCHSLKGILE-------GHKDVSLNSVVVSDD---GKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       194 d~~~~~~-~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      +.-+... ....+...+.       .+... ..|+.|+|.   ..+|++|+.+     +.++||....+...+....++.
T Consensus       142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~-~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~  220 (361)
T KOG2445|consen  142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQP-CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP  220 (361)
T ss_pred             ecCCccccccchhhhhhhhccCCcccccCc-ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence            8754431 1122222222       22233 378889874   4678888766     5899999888877788888889


Q ss_pred             ccceeEEEEEEc---C---cEEEEecCCCeEEEEecCCCc-----------------ceEEeccccCCCcCeEEEEeecC
Q 018591          258 AHEMAVLCVCLV---G---EFLCSGSADKSIGIWKREAFG-----------------KLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       258 ~~~~~v~~~~~~---~---~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      +|..+|..++|.   |   .+||+++.|| |+||.+....                 +...+..+.+|.+.|..+.|.-.
T Consensus       221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            999999988875   2   4799999999 9999987311                 24566678899999999999999


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcC
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                          |..|++.|.||+||+|...
T Consensus       300 ----GtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  300 ----GTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ----eeEEeecCCCceeeehhhh
Confidence                9999999999999999754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=6.7e-26  Score=178.40  Aligned_cols=307  Identities=17%  Similarity=0.218  Sum_probs=220.1

Q ss_pred             eeeeCc-cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccC
Q 018591           10 AVLSGH-VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        10 ~~l~~h-~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      ..++++ +.-|.|++|. +.-++||.++|.|.||+..+.+..+....|.+.|.+++.- ...|++|+.|..|..||-+-.
T Consensus       239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~  318 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYR  318 (626)
T ss_pred             eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccc
Confidence            344444 3579999996 7789999999999999998888887777999999999987 677888999999999994333


Q ss_pred             ccceeEEeeccccccceeeeecccce------------eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSN------------YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV  152 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i  152 (353)
                      .....    .+|.....+........            .-........+..+|......++.+|  +++++++.|+.+++
T Consensus       319 k~r~~----elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l  394 (626)
T KOG2106|consen  319 KLRET----ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL  394 (626)
T ss_pred             ccccc----cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence            21111    11222222222211111            11222233344558999999999999  89999999999999


Q ss_pred             EEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591          153 WRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       153 wd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  231 (353)
                      |+  ..+++.+.. -..+..|+.| +.+.++.|...|...+.|.++..     +...-..  ..++++++|+|+|.+||.
T Consensus       395 W~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~-----lv~~~~d--~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  395 WN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQD-----LVTIHTD--NEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             cc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccce-----eEEEEec--CCceEEEEEcCCCCEEEE
Confidence            99  445544432 3678889999 45599999999999999999865     4433333  444599999999999999


Q ss_pred             ecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCC--------------------
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREA--------------------  289 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~--------------------  289 (353)
                      |+.|+.|++|-+..+...........+  .+++.+.|  |++++.+-+.|-.|..|....                    
T Consensus       465 gs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG  542 (626)
T KOG2106|consen  465 GSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG  542 (626)
T ss_pred             ecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence            999999999998876555444444444  55655555  366666666666666663221                    


Q ss_pred             ----------------------------------------CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591          290 ----------------------------------------FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       290 ----------------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg  329 (353)
                                                              .+......++.+|.+-|++++|.-+    ...|++.+.|.
T Consensus       543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~----d~~li~tg~D~  618 (626)
T KOG2106|consen  543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK----DSHLISTGKDT  618 (626)
T ss_pred             EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC----CceEEecCCCc
Confidence                                                    1111233456789999999999988    67888888999


Q ss_pred             eEEEEEc
Q 018591          330 SLRVWWV  336 (353)
Q Consensus       330 ~i~iw~~  336 (353)
                      +|..|++
T Consensus       619 Si~qW~l  625 (626)
T KOG2106|consen  619 SIMQWRL  625 (626)
T ss_pred             eEEEEEe
Confidence            9999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7e-27  Score=196.19  Aligned_cols=278  Identities=18%  Similarity=0.208  Sum_probs=215.0

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc-eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccce
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL-RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENV   90 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~   90 (353)
                      +|+..-+.|+|+  |++|++++.||.|++|+..+- +....+..+...|.+++..+++|++++.+++|.+|.+..++...
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence            688999999995  999999999999999996655 44455555788999999998899999999999999998876321


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHD  168 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  168 (353)
                                                      ++...+-++.+++++.  .+++.|+.|-.|++.+..+......+++|.
T Consensus        91 --------------------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~  138 (933)
T KOG1274|consen   91 --------------------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD  138 (933)
T ss_pred             --------------------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence                                            2224556788899988  799999999999999999999999999999


Q ss_pred             cceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccc--ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          169 DAVNGLVASK--GIVYSASADGKIKAWGKELGKSHC--HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       169 ~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      ++|.++.+++  ++|++.+.||.|++||+.++....  ..+..........++..++|+|++..++....|+.|++|+..
T Consensus       139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~  218 (933)
T KOG1274|consen  139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK  218 (933)
T ss_pred             CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence            9999999933  489999999999999999876210  001111122224456889999998889999999999999999


Q ss_pred             ccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591          245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s  324 (353)
                      .....+.+..........++.++|+|.|||+++.||.|.|||.++-+    .   ......|.+++|-|+    ...+-.
T Consensus       219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~---~~~~~~Vc~~aw~p~----~n~it~  287 (933)
T KOG1274|consen  219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE----R---HEFKRAVCCEAWKPN----ANAITL  287 (933)
T ss_pred             CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch----h---ccccceeEEEecCCC----CCeeEE
Confidence            88655555444443344556667779999999999999999998732    1   223467999999998    544444


Q ss_pred             ccCCCeEEEE
Q 018591          325 GSLDKSLRVW  334 (353)
Q Consensus       325 ~~~dg~i~iw  334 (353)
                      -...|...+|
T Consensus       288 ~~~~g~~~~~  297 (933)
T KOG1274|consen  288 ITALGTLGVS  297 (933)
T ss_pred             EeeccccccC
Confidence            3334443333

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=185.87  Aligned_cols=248  Identities=25%  Similarity=0.366  Sum_probs=196.6

Q ss_pred             CCcEEEEEeCC-CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591           25 CGEFILSASQG-KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        25 ~~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      ++.+++++... ..|.+|.+..........--.++|.++.-+  |.+|+.|+..|.|++|.+.++.     ++..+    
T Consensus        49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----LL~v~----  119 (476)
T KOG0646|consen   49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----LLNVL----  119 (476)
T ss_pred             chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecccc-----HHHHH----
Confidence            35577777543 478999987665555333446789999876  7788888899999999999987     33332    


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC---------CceeeeeccccCcc
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA---------DLKCLESIKAHDDA  170 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~---------~~~~~~~~~~~~~~  170 (353)
                                             .+|-..|+|+.|+.  .++++|+.||.|.+|++.         +-++...+..|.-+
T Consensus       120 -----------------------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls  176 (476)
T KOG0646|consen  120 -----------------------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS  176 (476)
T ss_pred             -----------------------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence                                   37999999999998  899999999999999873         34677888999999


Q ss_pred             eEEEEEe-C---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          171 VNGLVAS-K---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       171 v~~i~~~-~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      |+++... +   ..+++++.|.++++||+..+.     ++......  ..+.+++.+|-+..+++|+.+|.|.+.++...
T Consensus       177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-----LLlti~fp--~si~av~lDpae~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-----LLLTITFP--SSIKAVALDPAERVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             eEEEEecCCCccceEEEecCCceEEEEEeccce-----eeEEEecC--CcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence            9999992 2   399999999999999999987     44444433  33599999999999999999999999887654


Q ss_pred             c------------cceeeeeeccccce--eEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591          247 I------------VRWKLACETKAHEM--AVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       247 ~------------~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~  310 (353)
                      .            ........+.+|..  .|+|++.  ||.+|++|+.||.|+|||+.+.+   .++++....++|+.+.
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q---~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ---CIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH---HHHHHhhhccccceeE
Confidence            3            12233445667777  7877766  59999999999999999999876   6776666778999999


Q ss_pred             eecC
Q 018591          311 ASPN  314 (353)
Q Consensus       311 ~~~~  314 (353)
                      +.|-
T Consensus       327 i~~~  330 (476)
T KOG0646|consen  327 INPL  330 (476)
T ss_pred             eecc
Confidence            9664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=191.68  Aligned_cols=280  Identities=19%  Similarity=0.249  Sum_probs=206.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCcee------eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeecc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRM------FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTL   97 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~   97 (353)
                      ...|+.+..||.|.++|......      +.....|.+.|..+.|.  ...|++++.|.++++||+++...     .   
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-----~---  135 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-----V---  135 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-----e---
Confidence            45899999999999999765433      35567899999999998  56799999999999999998761     1   


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce---------------
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK---------------  159 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~---------------  159 (353)
                                            ..+++.+|...|.+++|.+   ..+++|+.||.|.|||++-..               
T Consensus       136 ----------------------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~  193 (720)
T KOG0321|consen  136 ----------------------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH  193 (720)
T ss_pred             ----------------------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence                                  1224559999999999988   899999999999999986321               


Q ss_pred             -----e-------eeeccccC----cceEEEEE-eCCeEEEEcC-CCcEEEEeCCCCCccc-cccee--eeecc--CCce
Q 018591          160 -----C-------LESIKAHD----DAVNGLVA-SKGIVYSASA-DGKIKAWGKELGKSHC-HSLKG--ILEGH--KDVS  216 (353)
Q Consensus       160 -----~-------~~~~~~~~----~~v~~i~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~--~~~~~--~~~~  216 (353)
                           +       +....++.    +.|+.+.| .+..|++++. |+.|++||++...... .....  .+..+  ...-
T Consensus       194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG  273 (720)
T ss_pred             cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence                 0       00111232    34566777 5668998888 9999999998765210 01111  11112  1122


Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc----eeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE----MAVLCVCLVGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      +.++.....|.+|++.+.|+.|+.|++.....  .+...+.++.    ..-.+++|++.++++|+.|...++|.+.+.+.
T Consensus       274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~  351 (720)
T KOG0321|consen  274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSI--SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA  351 (720)
T ss_pred             eEEEEecCCCCeEEEEecCCcEEEEeccccCc--CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence            36777788889999999999999999987532  2222223322    22356678999999999999999999998765


Q ss_pred             eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                        ....+.+|.-.|++++|.|..   -.-++++++|..+++|++..+-+.
T Consensus       352 --~~~~l~Ght~eVt~V~w~pS~---~t~v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  352 --PPALLLGHTREVTTVRWLPSA---TTPVATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             --ChhhhhCcceEEEEEeecccc---CCCceeeccCcceEEEeccCchhh
Confidence              556688999999999999973   345677799999999999766443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=5e-27  Score=191.28  Aligned_cols=326  Identities=17%  Similarity=0.202  Sum_probs=234.6

Q ss_pred             CCceeeeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCCce---------------------ee---------
Q 018591            5 SHRSLAVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPDLR---------------------MF---------   49 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~~~---------------------~~---------   49 (353)
                      +.+.+..+.||++.|.+++|.     .-+|||+|.|..||||.+.-+.                     ..         
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            346788999999999999995     3489999999999999853221                     11         


Q ss_pred             -EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee--EEeecccc-ccceeeeecccce-eEe-------
Q 018591           50 -TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF--RLVDTLPT-TKDYLGKFMKQSN-YVQ-------  115 (353)
Q Consensus        50 -~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~-------  115 (353)
                       ..+.+|...|+++.|.  +..|++++.|.++.+|..++...--.  ..+..... ...+......+.. .+.       
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence             1124899999999998  55799999999999999877632111  11222221 1223332222221 111       


Q ss_pred             ---eccc------ceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC----CceeeeeccccCcceEEEEE-e-C
Q 018591          116 ---TRRH------HKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA----DLKCLESIKAHDDAVNGLVA-S-K  178 (353)
Q Consensus       116 ---~~~~------~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~i~~-~-~  178 (353)
                         ....      ......||.+.|+.++|+|  .+|++.+.|-+-+++-.-    +...+.+-+-|...++|+++ + +
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~  419 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED  419 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence               1111      1123348999999999998  999999999999998643    12334455678889999999 5 4


Q ss_pred             CeEEEEcCCCcEEEEeCCCCC-------------------------------------------c---------------
Q 018591          179 GIVYSASADGKIKAWGKELGK-------------------------------------------S---------------  200 (353)
Q Consensus       179 ~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~---------------  200 (353)
                      -.+++|..+..+|+|+....-                                           .               
T Consensus       420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~  499 (764)
T KOG1063|consen  420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE  499 (764)
T ss_pred             ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence            589999999999999731100                                           0               


Q ss_pred             -------------ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeeecccccee
Q 018591          201 -------------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACETKAHEMA  262 (353)
Q Consensus       201 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~  262 (353)
                                   ...+....+.+|.-. |.+++.+|+++++++++...     .|++|+..+-    .....+.+|...
T Consensus       500 L~ePP~EdqLq~~tLwPEv~KLYGHGyE-v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----~~~~~L~~HsLT  574 (764)
T KOG1063|consen  500 LTEPPTEDQLQQNTLWPEVHKLYGHGYE-VYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----LQVQELEGHSLT  574 (764)
T ss_pred             ccCCChHHHHHHhccchhhHHhccCcee-EEEEEecCCCCEEeehhhhCCccceEEEEEeccch----hhhheecccceE
Confidence                         000111123345444 59999999999999998653     6899998876    556678899999


Q ss_pred             EEEEEE--cCcEEEEecCCCeEEEEecCCCcce-EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          263 VLCVCL--VGEFLCSGSADKSIGIWKREAFGKL-CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       263 v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      |+.+.|  ++++|++.+.|+++.+|........ ......+.|+.-|.+..|+|+    +.+++|+|.|.+|++|...+.
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd----e~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD----EKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc----cceeEEecCCceEEEEeccCc
Confidence            988877  4999999999999999998654321 123347789999999999999    999999999999999999887

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-27  Score=171.53  Aligned_cols=217  Identities=18%  Similarity=0.190  Sum_probs=179.5

Q ss_pred             eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCC
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~  199 (353)
                      +.+|..+++.+.++.  ++|++++.|....+|-..+|+.+.++.+|.+.|+++..  ....+++|+.|.++++||..+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            348999999999998  99999999999999999899999999999999999998  45599999999999999999998


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecC-----CCcEEEeecccccc---ceeeeeeccccceeEEEEEEc--
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-----DGFVMGWEGNVEIV---RWKLACETKAHEMAVLCVCLV--  269 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~~--  269 (353)
                           .+..++  .+.+|..+.|+++|++++....     .+.|.++|++....   ...+......+...++..-|.  
T Consensus        86 -----~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   86 -----QLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             -----EEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence                 444444  3445799999999998877654     46799999984321   113344444455666666554  


Q ss_pred             CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591          270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKS  349 (353)
Q Consensus       270 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  349 (353)
                      +++|++|..||.|.+||+++++.  .+...+.|+..|+.+.++|+    ..++++++.|.+-++||+.+-+.+++.....
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d----~T~FiT~s~Dttakl~D~~tl~v~Kty~te~  232 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRD----RTYFITGSKDTTAKLVDVRTLEVLKTYTTER  232 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCC----cceEEecccCccceeeeccceeeEEEeeecc
Confidence            99999999999999999999865  45566779999999999999    9999999999999999999998888777555


Q ss_pred             cccC
Q 018591          350 IISC  353 (353)
Q Consensus       350 ~~~c  353 (353)
                      +++|
T Consensus       233 PvN~  236 (327)
T KOG0643|consen  233 PVNT  236 (327)
T ss_pred             cccc
Confidence            5543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7e-27  Score=172.82  Aligned_cols=243  Identities=17%  Similarity=0.212  Sum_probs=182.2

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      ...|.++.|+  ++.|+.++.||.+++||+....     +...                            ..|..++.+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~~~----------------------------~~~~~plL~   59 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LKLK----------------------------FKHGAPLLD   59 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-----hhhh----------------------------eecCCceee
Confidence            6789999998  6778888899999999998764     1111                            168999999


Q ss_pred             EEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591          134 LTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILE  210 (353)
Q Consensus       134 ~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  210 (353)
                      .+|.+ ..+++|+.||.|+.+|++++.. ..+..|..+|.|+...  .+.+++|+.|++|++||.+...     ....+.
T Consensus        60 c~F~d~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-----~~~~~d  133 (323)
T KOG1036|consen   60 CAFADESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-----VVGTFD  133 (323)
T ss_pred             eeccCCceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-----cccccc
Confidence            99999 8999999999999999987654 4455799999999994  6799999999999999999743     222222


Q ss_pred             ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE--EEEEcCcEEEEecCCCeEEEEecC
Q 018591          211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--CVCLVGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       211 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~i~iw~~~  288 (353)
                      ...  .|.++...  ++.|++|+.+..+.+||++........  ....-...+.  ++-|++.=.++++-||.|.+=.++
T Consensus       134 ~~k--kVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d  207 (323)
T KOG1036|consen  134 QGK--KVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD  207 (323)
T ss_pred             cCc--eEEEEecc--CCEEEEeecCceEEEEEcccccchhhh--ccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence            222  24666555  778999999999999999986433211  1112222333  334467778899999999886665


Q ss_pred             CCc-ceEEeccccCCCc---------CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          289 AFG-KLCRVGAITGHEG---------PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       289 ~~~-~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      ..+ ....-..++.|..         +|++|+|+|-    ...|+||+.||.|.+||+.+.+.+.++..
T Consensus       208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~----~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI----HGTFATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             CchHHhhhceeEEeeecccCCceEEEEeceeEeccc----cceEEecCCCceEEEccCcchhhhhhccC
Confidence            441 1112223444532         7999999999    88999999999999999999988876553

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=1.1e-25  Score=177.27  Aligned_cols=293  Identities=18%  Similarity=0.275  Sum_probs=219.4

Q ss_pred             CCceeeeeeCccCceEEEEEC----CcEEEEE--eCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCC
Q 018591            5 SHRSLAVLSGHVGSVSSLALC----GEFILSA--SQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQD   75 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~----~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~d   75 (353)
                      +.+.++.+..-...|.|++|+    |.+|+.-  +.+..+.|||.+.+......+.....|....|.   .+.+++.+. 
T Consensus       143 ~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-  221 (626)
T KOG2106|consen  143 TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-  221 (626)
T ss_pred             cceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-
Confidence            344566666677899999995    6666654  446689999999988888777777888888887   566777665 


Q ss_pred             CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEE
Q 018591           76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd  154 (353)
                      |.+..|+++.+...  +....++.                          ....-|.|++|.+ +.+++|..+|.|.+|+
T Consensus       222 ~H~~Fw~~~~~~l~--k~~~~fek--------------------------~ekk~Vl~v~F~engdviTgDS~G~i~Iw~  273 (626)
T KOG2106|consen  222 GHLYFWTLRGGSLV--KRQGIFEK--------------------------REKKFVLCVTFLENGDVITGDSGGNILIWS  273 (626)
T ss_pred             ceEEEEEccCCceE--EEeecccc--------------------------ccceEEEEEEEcCCCCEEeecCCceEEEEe
Confidence            79999998877621  11111111                          2236799999999 8999999999999999


Q ss_pred             cCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcc--------------------------------
Q 018591          155 VADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSH--------------------------------  201 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~--------------------------------  201 (353)
                      ..+.+..+....|.+.|.+++. .++.|++|+.|..|..||-.-.+..                                
T Consensus       274 ~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~  353 (626)
T KOG2106|consen  274 KGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ  353 (626)
T ss_pred             CCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence            9888888777799999999999 7889999999999999983221110                                


Q ss_pred             ---cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC
Q 018591          202 ---CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA  278 (353)
Q Consensus       202 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~  278 (353)
                         .........+|.... ..++.+|+...+++++.|+.+++|+  ..+..+....   ..+.....+.|.| .+|.|..
T Consensus       354 Gt~~~~f~~~v~gh~del-wgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~  426 (626)
T KOG2106|consen  354 GTLENGFTLTVQGHGDEL-WGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTA  426 (626)
T ss_pred             eeecCCceEEEEecccce-eeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeec
Confidence               001111233455544 7889999999999999999999999  3333333322   2233444555567 9999999


Q ss_pred             CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      .|...+.|.++..   .+. +.....++++++|+|+    |.+||.|+.|+.|.+|.+.....
T Consensus       427 ~G~w~V~d~e~~~---lv~-~~~d~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  427 TGRWFVLDTETQD---LVT-IHTDNEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             cceEEEEecccce---eEE-EEecCCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCc
Confidence            9999999999844   232 2333789999999999    99999999999999999986654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=202.89  Aligned_cols=233  Identities=16%  Similarity=0.176  Sum_probs=192.5

Q ss_pred             eEEEEEC---CcEEEEEeCCCcEEEEeCCC---ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccc
Q 018591           19 VSSLALC---GEFILSASQGKDIIVWQQPD---LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSEN   89 (353)
Q Consensus        19 v~~~~~~---~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~   89 (353)
                      +..|.|+   .++|||++..|.|.+||+..   .+.+..|..|+..+.++.|+   .++|++|++||+|++||++.... 
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-  168 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-  168 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence            3445553   78999999999999999986   66777889999999999998   78999999999999999987651 


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc-eeeeecc
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL-KCLESIK  165 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~-~~~~~~~  165 (353)
                                                     ...+.+....|..+.|+|   +.++++...|.+++||++.. ++...+.
T Consensus       169 -------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~  217 (839)
T KOG0269|consen  169 -------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT  217 (839)
T ss_pred             -------------------------------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence                                           222236778899999999   89999999999999999874 5678889


Q ss_pred             ccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe-EEeec--CCCcEEE
Q 018591          166 AHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW-VYGGG--SDGFVMG  240 (353)
Q Consensus       166 ~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~i  240 (353)
                      +|.++|.|+.|+|+  +|++|+.|++|+|||+.+.+     .......+...++..+.|-|...+ |++++  .|-.|++
T Consensus       218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~-----~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V  292 (839)
T KOG0269|consen  218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR-----AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHV  292 (839)
T ss_pred             cccCceEEEeecCCCceeeecCCCccEEEEeccCCC-----ccceeEEeecceeeeeeeccCccchhhhhhccccceEEE
Confidence            99999999999555  99999999999999999876     455555666777899999997654 55544  4778999


Q ss_pred             eeccccccceeeeeeccccceeEEEEEEcC---cEEEEecCCCeEEEEecCCCc
Q 018591          241 WEGNVEIVRWKLACETKAHEMAVLCVCLVG---EFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      ||++..   +.+...+..|...++.++|.+   ..+.+++.||+|..-.+++..
T Consensus       293 WDvrRP---YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  293 WDVRRP---YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             Eeeccc---cccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            999876   356677888999999999973   578899999988776665544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.6e-28  Score=199.13  Aligned_cols=280  Identities=18%  Similarity=0.215  Sum_probs=209.1

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCce----eeEEeccCc---eeeEEEEEe---CCEEEEecCCCcEEEEEccc
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLR----MFTKFGHGD---GSVKAVVTV---GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~---~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~   85 (353)
                      ...+|+.+  -..++.++. ..++|+.+....    +...++...   -.+..+.|.   .++|++++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            34455553  445666655 367777655322    222222211   233445565   78999999999999999976


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeee
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      ....                             .....|..|...++++.|++   .+|++|++||.|++||++..+...
T Consensus       120 ~~rn-----------------------------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~  170 (839)
T KOG0269|consen  120 SIRN-----------------------------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS  170 (839)
T ss_pred             cccc-----------------------------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence            3210                             01223448999999999998   899999999999999999999999


Q ss_pred             eccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          163 SIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      ++.+....|..+.|.   ++.++++...|.+.+||++...    .+...+.+|.+.+ .++.|+|++.+||+|+.|+.|+
T Consensus       171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~k~~AH~GpV-~c~nwhPnr~~lATGGRDK~vk  245 (839)
T KOG0269|consen  171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEKKLTAHNGPV-LCLNWHPNREWLATGGRDKMVK  245 (839)
T ss_pred             cccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----hHHHHhhcccCce-EEEeecCCCceeeecCCCccEE
Confidence            999989999999993   4499999999999999999876    4677788898876 9999999999999999999999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEEc---CcEEEEec--CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGS--ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      |||.........  .. -....++.++.|-   ..+|++++  .|-.|+|||++..-.  +...+..|...++.++|...
T Consensus       246 iWd~t~~~~~~~--~t-InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P~~t~~eH~~~vt~i~W~~~  320 (839)
T KOG0269|consen  246 IWDMTDSRAKPK--HT-INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--PYATFLEHTDSVTGIAWDSG  320 (839)
T ss_pred             EEeccCCCccce--eE-EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--cceeeeccCccccceeccCC
Confidence            999987532211  11 1123456666663   45788776  488999999996543  56678899999999999874


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                         +...|.+++.||+|..-.+++..
T Consensus       321 ---d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  321 ---DRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             ---CceeeEeecCccHHHHhhhhccc
Confidence               26799999999988766555543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=3e-27  Score=186.00  Aligned_cols=276  Identities=16%  Similarity=0.296  Sum_probs=214.4

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---eeeEEecc--CceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---RMFTKFGH--GDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~--~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      +++| .|..-|.++.++  .++++||+. |.|+|||+...   ..+..+..  ....|.++...  ++.|++|+.-.++.
T Consensus       413 ~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls  490 (705)
T KOG0639|consen  413 INTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS  490 (705)
T ss_pred             hhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence            3344 477788888886  789999987 78999998643   23333322  24566666554  88999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      |||+........   ..++                           .......+++.+|  +..+++..||.|.|||+.+
T Consensus       491 iWDLAapTprik---aelt---------------------------ssapaCyALa~spDakvcFsccsdGnI~vwDLhn  540 (705)
T KOG0639|consen  491 IWDLAAPTPRIK---AELT---------------------------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN  540 (705)
T ss_pred             eeeccCCCcchh---hhcC---------------------------CcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence            999987652111   1111                           2223456677787  8889999999999999999


Q ss_pred             ceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591          158 LKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ...++.|++|...+.||.++  +..|.+|+.|.+||-||+++++     .  ..+......|.++.++|++.++++|-.+
T Consensus       541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr-----q--lqqhdF~SQIfSLg~cP~~dWlavGMen  613 (705)
T KOG0639|consen  541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR-----Q--LQQHDFSSQIFSLGYCPTGDWLAVGMEN  613 (705)
T ss_pred             ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh-----h--hhhhhhhhhheecccCCCccceeeeccc
Confidence            99999999999999999994  3399999999999999999886     1  1122223335899999999999999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      +.+.+......     ....+..|..-|.++.|.  |+++++.+.|+.+..|...-+..+...   + ..++|.+...+.
T Consensus       614 s~vevlh~skp-----~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs---k-E~SsVlsCDIS~  684 (705)
T KOG0639|consen  614 SNVEVLHTSKP-----EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---K-ESSSVLSCDISF  684 (705)
T ss_pred             CcEEEEecCCc-----cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec---c-ccCcceeeeecc
Confidence            99998877654     344566788888888775  999999999999999999887743333   2 356899999999


Q ss_pred             CCCCCCeEEEEccCCCeEEEEEc
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      |    .++++||+.|....||.+
T Consensus       685 d----dkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  685 D----DKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             C----ceEEEecCCCcceEEEEE
Confidence            9    899999999999999876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=6.9e-26  Score=188.36  Aligned_cols=314  Identities=19%  Similarity=0.267  Sum_probs=233.3

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--C-cEEEEEeCCCcEEEEeCCCceeeEEec-cCceeeEEEEEe--CCEEEEecCCC
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--G-EFILSASQGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~-~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      ++.++.+.+|+.-.++|++++|.  | ..|++|+..|.+.+||++..+.+.... .|.+.|....|-  ...+++++.|+
T Consensus       231 lK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn  310 (910)
T KOG1539|consen  231 LKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN  310 (910)
T ss_pred             cccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCC
Confidence            56778889999667999999994  4 478888888999999999988887665 788888888876  56788999999


Q ss_pred             cEEEEEcccCccc--e----------eEEeeccccccceee-----------------------e---------------
Q 018591           77 RIRVWKVSRSSEN--V----------FRLVDTLPTTKDYLG-----------------------K---------------  106 (353)
Q Consensus        77 ~i~~w~~~~~~~~--~----------~~~~~~~~~~~~~~~-----------------------~---------------  106 (353)
                      .+++|-.+++...  .          ..++........++.                       .               
T Consensus       311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~  390 (910)
T KOG1539|consen  311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST  390 (910)
T ss_pred             ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence            9999977743321  0          000110000000000                       0               


Q ss_pred             ----------eccc-------cee--Eeecccceeee-----------eecC------CceEEEEEeC--CeEEEecCCC
Q 018591          107 ----------FMKQ-------SNY--VQTRRHHKRLW-----------IEHA------DSISCLTVYN--GLIYSGSWDK  148 (353)
Q Consensus       107 ----------~~~~-------~~~--~~~~~~~~~~~-----------~~~~------~~i~~~~~~~--~~l~~~~~dg  148 (353)
                                +...       .+.  ..........|           ..+.      ..+++++.++  +..+.|+..|
T Consensus       391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G  470 (910)
T KOG1539|consen  391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG  470 (910)
T ss_pred             hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence                      0000       000  00000000111           1222      5677777777  8889999999


Q ss_pred             cEEEEEcCCceeeeec---cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591          149 TLKVWRVADLKCLESI---KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       149 ~v~iwd~~~~~~~~~~---~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                      .|-+|++.+|-....+   ..|.++|++++.  -+..+++++.+|.+++||.....     +...+.-...  +..+..+
T Consensus       471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-----l~~~l~l~~~--~~~iv~h  543 (910)
T KOG1539|consen  471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-----LKKSLRLGSS--ITGIVYH  543 (910)
T ss_pred             eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-----eeeeeccCCC--cceeeee
Confidence            9999999999888888   589999999999  34489999999999999998876     5554444333  4788888


Q ss_pred             CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      .....++.+..|-.|+++|..+.    +....+.+|...++++++  +|+.|++++.|++|++||+.++.....+    .
T Consensus       544 r~s~l~a~~~ddf~I~vvD~~t~----kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~----~  615 (910)
T KOG1539|consen  544 RVSDLLAIALDDFSIRVVDVVTR----KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL----L  615 (910)
T ss_pred             ehhhhhhhhcCceeEEEEEchhh----hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE----e
Confidence            88889999999999999999987    788889999999988777  4999999999999999999998743322    2


Q ss_pred             CCcCeEEEEeecCCCCCCeEEEEccCC-CeEEEEE
Q 018591          302 HEGPVKCLQASPNAVGGGFLLYSGSLD-KSLRVWW  335 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~~l~s~~~d-g~i~iw~  335 (353)
                      -..+.+++.|+|+    |++|||...| .-|++|.
T Consensus       616 vd~~~~sls~SPn----gD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  616 VDSPCTSLSFSPN----GDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             cCCcceeeEECCC----CCEEEEEEecCceEEEEE
Confidence            4678999999999    9999999999 5699995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=9.2e-28  Score=181.23  Aligned_cols=242  Identities=16%  Similarity=0.210  Sum_probs=192.2

Q ss_pred             CCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      .-+++.+|+.|.+.|..|+++...+++++.|.+|+.|.++. .+..++.+ ...+..+.-.  ++.++|+|.  .|.|||
T Consensus        98 qR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD  173 (433)
T KOG0268|consen   98 QRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWD  173 (433)
T ss_pred             hhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecc
Confidence            44567899999999999999989999999999999999755 46666654 4556666655  677888887  499999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      .....     .+.                           .+.--...|.++.|+|   ..|++++.|+.|.+||+++..
T Consensus       174 ~~R~~-----Pv~---------------------------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~  221 (433)
T KOG0268|consen  174 EQRDN-----PVS---------------------------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS  221 (433)
T ss_pred             cccCC-----ccc---------------------------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC
Confidence            87654     111                           2223456899999999   889999999999999999999


Q ss_pred             eeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          160 CLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      +++.+.. ...-+.|+|+|.  .+++|+.|..++.||++...    .+.....+|.+.+ .++.|+|.|+.+++|+.|.+
T Consensus       222 Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----~p~~v~~dhvsAV-~dVdfsptG~EfvsgsyDks  295 (433)
T KOG0268|consen  222 PLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----RPLNVHKDHVSAV-MDVDFSPTGQEFVSGSYDKS  295 (433)
T ss_pred             ccceeee-eccccceecCccccceeeccccccceehhhhhhc----ccchhhcccceeE-EEeccCCCcchhccccccce
Confidence            8877643 556688999666  78899999999999999876    4778888888877 99999999999999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      |+||..+.+... ....+  .-...|.|+.|  |.+++++|+.|+.|++|.....+
T Consensus       296 IRIf~~~~~~SR-diYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  296 IRIFPVNHGHSR-DIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             EEEeecCCCcch-hhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            999999876321 11111  11245667666  58999999999999999987655

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.96  E-value=2.8e-27  Score=171.28  Aligned_cols=287  Identities=16%  Similarity=0.207  Sum_probs=207.4

Q ss_pred             ceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec-cCceeeEEEEEe-CCEEEEecCCCcEEEEEc
Q 018591            7 RSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV-GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~   83 (353)
                      .|..+|++|.+.|+++.|. +.+|.+|..-|.|++|++++.+....+. .|...|+.+..- ++.+.+-+.|+.+.+|++
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI   84 (323)
T ss_pred             CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence            4678899999999999997 7789999999999999999999888888 678888888776 789999999999999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCC-cEEEE---------
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDK-TLKVW---------  153 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-~v~iw---------  153 (353)
                      ....   +..                                .|+-.++++.|.+.-+...+... ....+         
T Consensus        85 a~s~---~i~--------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h  129 (323)
T KOG0322|consen   85 AYSA---FIS--------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH  129 (323)
T ss_pred             cCcc---eEE--------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence            8754   111                                23334444555442222222221 12222         


Q ss_pred             --EcCCceeeeec----cccCcceEEEEE--eCC---eEEEEcCCCcEEEEeCCCCCcc-----cccceeeeeccCCcee
Q 018591          154 --RVADLKCLESI----KAHDDAVNGLVA--SKG---IVYSASADGKIKAWGKELGKSH-----CHSLKGILEGHKDVSL  217 (353)
Q Consensus       154 --d~~~~~~~~~~----~~~~~~v~~i~~--~~~---~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~v  217 (353)
                        |......+...    .+..+.+.+..+  ...   .+++|-.+|.+.+||+.++...     ..+.......|...+ 
T Consensus       130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv-  208 (323)
T KOG0322|consen  130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV-  208 (323)
T ss_pred             hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc-
Confidence              22111111111    123466777775  112   7788889999999999986311     111222334455544 


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccce--eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEE
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW--KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  295 (353)
                      .++.+.+.-..=++|+.+..+..|++.......  .....++.....-..+.+|++.+|+++.|+.||+|+.++..   +
T Consensus       209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---p  285 (323)
T KOG0322|consen  209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---P  285 (323)
T ss_pred             eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---c
Confidence            899998876677888888899999887653222  22223333334456788999999999999999999999888   7


Q ss_pred             eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      +..++-|.+.|++++|+|+    ..++|.+|.|++|.+|++
T Consensus       286 LAVLkyHsagvn~vAfspd----~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 LAVLKYHSAGVNAVAFSPD----CELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhhcceeEEEeCCC----CchhhhccCCceEEeeec
Confidence            8889999999999999999    899999999999999986

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.7e-27  Score=183.71  Aligned_cols=213  Identities=25%  Similarity=0.352  Sum_probs=179.2

Q ss_pred             eeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce----------eeeeccccCcceEEEEE---eCCeEEEEcCC
Q 018591          124 WIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK----------CLESIKAHDDAVNGLVA---SKGIVYSASAD  187 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~i~~---~~~~l~~~~~d  187 (353)
                      ...|.+.|+.+.+.|   ..+++.+..+.|.|||..+..          +-.++.+|...-++++|   ..+.+++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            347999999999988   788888999999999986421          22367789887788999   34599999999


Q ss_pred             CcEEEEeCCCCCc--ccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE
Q 018591          188 GKIKAWGKELGKS--HCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL  264 (353)
Q Consensus       188 g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  264 (353)
                      ++|++||+.....  ....+...+.+|...+ ..++|++- ...|++.+.|+.+.|||++++  ..+......+|...+.
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~V-eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVV-EDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVN  276 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcce-ehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCcee
Confidence            9999999986653  2345667788888876 99999994 568889999999999999973  3467777889999999


Q ss_pred             EEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          265 CVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       265 ~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      |++++   +..||+|+.|++|++||+++...  ++..+.+|...|.++.|+|..   ...||+++.|+.+.|||+..-..
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~---etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHN---ETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCC---CceeEecccCCcEEEEecccccc
Confidence            99996   77999999999999999998776  788899999999999999984   67999999999999999987655


Q ss_pred             ccc
Q 018591          342 TSD  344 (353)
Q Consensus       342 ~~~  344 (353)
                      .+.
T Consensus       352 eq~  354 (422)
T KOG0264|consen  352 EQS  354 (422)
T ss_pred             ccC
Confidence            543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.5e-26  Score=188.34  Aligned_cols=316  Identities=17%  Similarity=0.167  Sum_probs=223.3

Q ss_pred             EEEEEC--CcEEEEEeCCCcEEEEeCCCceee---EEeccCceeeEEEEEe-------------CCEEEEecCCCcEEEE
Q 018591           20 SSLALC--GEFILSASQGKDIIVWQQPDLRMF---TKFGHGDGSVKAVVTV-------------GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~---~~~~~~~~~v~~~~~~-------------~~~l~s~~~dg~i~~w   81 (353)
                      -++.|+  .+.|...-.|..++|||+.+-..+   ..+-.|...|+.+.--             ...+++++.|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            356676  668888889999999998875433   3344577777776531             3568999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEe-------ecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQ-------TRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV  152 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i  152 (353)
                      +++.......-.-..+.  ...............       ...+......+....+.+++.+|  ++|++|..-|.+++
T Consensus       408 ~l~~ctnn~vyrRNils--~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV  485 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILS--ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV  485 (1080)
T ss_pred             ecccccccceeecccch--hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence            99874322110000000  000000000000000       00011111124456799999999  89999999999999


Q ss_pred             EEcCCceeeeeccccCcceEEEEEe-C----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-
Q 018591          153 WRVADLKCLESIKAHDDAVNGLVAS-K----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-  226 (353)
Q Consensus       153 wd~~~~~~~~~~~~~~~~v~~i~~~-~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  226 (353)
                      |++.+.+....+++|...|.|+.++ +    .+|++++.|.-|.+||....-    .+...+.+|...+ +++.|--+| 
T Consensus       486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny----~l~qtld~HSssI-TsvKFa~~gl  560 (1080)
T KOG1408|consen  486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY----DLVQTLDGHSSSI-TSVKFACNGL  560 (1080)
T ss_pred             EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc----chhhhhcccccce-eEEEEeecCC
Confidence            9999999999999999999999993 3    289999999999999997654    4778888998887 999998877 


Q ss_pred             -CeEEeecCCCcEEEeecccc-ccceeeeeeccccceeEE--EEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCC
Q 018591          227 -KWVYGGGSDGFVMGWEGNVE-IVRWKLACETKAHEMAVL--CVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       227 -~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                       ..+++++.|..|.+--.+.. ........+-......+.  .+.++.+++++++.|..|+||+++++++.+...--++|
T Consensus       561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~  640 (1080)
T KOG1408|consen  561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH  640 (1080)
T ss_pred             ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence             67888888986654333211 001111111111223344  44455789999999999999999999966555555678


Q ss_pred             CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ++....+...|.    |.||++.+.|.++.++|+.+++++++..
T Consensus       641 eG~lIKv~lDPS----giY~atScsdktl~~~Df~sgEcvA~m~  680 (1080)
T KOG1408|consen  641 EGDLIKVILDPS----GIYLATSCSDKTLCFVDFVSGECVAQMT  680 (1080)
T ss_pred             CCceEEEEECCC----ccEEEEeecCCceEEEEeccchhhhhhc
Confidence            888999999999    9999999999999999999999998754

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.4e-26  Score=177.39  Aligned_cols=283  Identities=13%  Similarity=0.195  Sum_probs=217.4

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe--CC-EEEEecCCCcEEEEEcccCcc
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      .++|++|.|+  ...|++|+.||++++|.+.  ....++.+.-...+|.+..|.  |. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4689999998  6799999999999999864  345666666667888888887  66 899999999999999988764


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                      ..+......                             ....+..+..++  ++|+..+..|.|.+....+++.+..++.
T Consensus       293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki  343 (514)
T KOG2055|consen  293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI  343 (514)
T ss_pred             ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence            333332221                             123445556666  8999999999999999999999988864


Q ss_pred             cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          167 HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       167 ~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                       .+.|..++| +++ .|++++.+|.|.+||++...     +...+.....---++++.++++.+||+|+..|.|-|||.+
T Consensus       344 -eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-----~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  344 -EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS-----CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             -ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc-----eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence             788999999 333 88888889999999999886     6666665554434789999999999999999999999976


Q ss_pred             ccc--cceeeeeeccccceeEEEEEEc--CcEEEEec--CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591          245 VEI--VRWKLACETKAHEMAVLCVCLV--GEFLCSGS--ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG  318 (353)
Q Consensus       245 ~~~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  318 (353)
                      +..  ...+++..+..-...|..+.|+  .++||.++  ....+++-.+.+...+...-.....-+.|+|++|+|.    
T Consensus       418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~----  493 (514)
T KOG2055|consen  418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN----  493 (514)
T ss_pred             hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC----
Confidence            531  1224555556666778888775  67777766  4678888887765522222222233456999999999    


Q ss_pred             CeEEEEccCCCeEEEEEcC
Q 018591          319 GFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       319 ~~~l~s~~~dg~i~iw~~~  337 (353)
                      +-+||.|..+|.+.+|.+.
T Consensus       494 sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  494 SGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CceEEeecCCCceeeEeec
Confidence            9999999999999999874

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1e-26  Score=171.14  Aligned_cols=230  Identities=22%  Similarity=0.302  Sum_probs=180.6

Q ss_pred             eccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCcc--ceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           52 FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSE--NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        52 ~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      ...|.+.|+++..+   ++++++|+.||.|.+||++....  ...-......               + .   ...--.+
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c---------------~-v---~~~h~~~   99 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKC---------------I-V---AKQHENG   99 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheee---------------e-c---cccCCcc
Confidence            35688999999997   89999999999999999986541  1111110000               0 0   0001127


Q ss_pred             cCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe-----CCeEEEEcCCCcEEEEeCCCC
Q 018591          127 HADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-----KGIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       127 ~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-----~~~l~~~~~dg~i~iwd~~~~  198 (353)
                      |.-.|.++.|.|   .++.+++.|.++++||.++.+....|+. ++.|++-+++     .-++++|..+-.|++.|+..+
T Consensus       100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG  178 (397)
T KOG4283|consen  100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG  178 (397)
T ss_pred             ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence            888999999999   8999999999999999999888777754 5667766663     337888999999999999999


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCe-EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKW-VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  277 (353)
                      .     ....+.+|.+.+ .++.|+|...+ |++|+.||.|++||++..                               
T Consensus       179 s-----~sH~LsGHr~~v-laV~Wsp~~e~vLatgsaDg~irlWDiRra-------------------------------  221 (397)
T KOG4283|consen  179 S-----FSHTLSGHRDGV-LAVEWSPSSEWVLATGSADGAIRLWDIRRA-------------------------------  221 (397)
T ss_pred             c-----ceeeeccccCce-EEEEeccCceeEEEecCCCceEEEEEeecc-------------------------------
Confidence            8     899999999987 99999997664 688999999999999764                               


Q ss_pred             CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                       .|..++.|..+.+.+..+..-..|.+.|..++|+.+    +.++++.+.|..+++|+..+++...
T Consensus       222 -sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd----~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  222 -SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD----ARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             -cceeEEeecccCccCccccccccccceeeeeeeccc----chhhhhccCccceEEeecccCcccc
Confidence             244555666655544455556789999999999999    9999999999999999999886543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=166.79  Aligned_cols=276  Identities=14%  Similarity=0.207  Sum_probs=203.1

Q ss_pred             eEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           19 VSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        19 v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      -.|+.|+  |.+||+|..||.|.|||+.+...-+.+.+|..+|.+++|+  |..|++++.|..|.+||+..+.     ++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-----~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-----PL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-----ce
Confidence            7889997  9999999999999999999999999999999999999998  8999999999999999998886     22


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCc--
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDD--  169 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--  169 (353)
                      ..+                            ...++|....|+|   +..++.-.+..-.+.++..++....-....+  
T Consensus       101 ~ri----------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl  152 (405)
T KOG1273|consen  101 KRI----------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL  152 (405)
T ss_pred             eEE----------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence            222                            4567889999998   5555555555555555544221111011111  


Q ss_pred             -c-eEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591          170 -A-VNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       170 -~-v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                       . -.+..|  .++++++|...|.+.++|..+.+     +...++......|..+.++..|+.|+.-+.|..|+.|+++.
T Consensus       153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e-----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE-----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             ccccccccccCCCCEEEEecCcceEEEEecchhe-----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence             1 111234  56699999999999999999887     66666655534458999999999999999999999999873


Q ss_pred             ccc-----ceeeeeec----cccceeEEEEEEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCCC-cCeEEEEeecC
Q 018591          246 EIV-----RWKLACET----KAHEMAVLCVCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGHE-GPVKCLQASPN  314 (353)
Q Consensus       246 ~~~-----~~~~~~~~----~~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~  314 (353)
                      -..     ..++...+    ....-...|++-+|.|+++|+ ....++||....|.   .++.+.|.. .....+.|.|-
T Consensus       228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc---eeeeecCCchhheeecccccc
Confidence            110     11111111    111223355555688888776 45689999999888   666677766 56889999998


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                          ...+++- ..|.+++|......
T Consensus       305 ----rp~i~si-~sg~v~iw~~~~~e  325 (405)
T KOG1273|consen  305 ----RPIIASI-ASGVVYIWAVVQVE  325 (405)
T ss_pred             ----eeeeeec-cCCceEEEEeeccc
Confidence                7778877 78899999876543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.7e-24  Score=175.09  Aligned_cols=280  Identities=18%  Similarity=0.217  Sum_probs=219.7

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee-EEecc-CceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccce
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF-TKFGH-GDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENV   90 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~   90 (353)
                      ..+|++|||+  .+.||.+-.||.|.+|++...-.. ..+.+ ....|.+++|. +..|++.+.+|.|.-||+.+.+.  
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~--  102 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ--  102 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce--
Confidence            4789999996  678999999999999999875443 33443 46789999999 99999999999999999988762  


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee--eccc
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE--SIKA  166 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~--~~~~  166 (353)
                                                    ...+....+.|.+++.+|  ..++.|+.||.+..++...++...  .+..
T Consensus       103 ------------------------------~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r  152 (691)
T KOG2048|consen  103 ------------------------------KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR  152 (691)
T ss_pred             ------------------------------eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence                                          122225667999999999  889999999988888877665543  3444


Q ss_pred             cCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccc--eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          167 HDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSL--KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       167 ~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      ..+.|.++.|++.  .+++|+.||.|++||...+.......  ...+.......|.++.|-.++ .+++|...|+|.+||
T Consensus       153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWD  231 (691)
T ss_pred             ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEc
Confidence            5789999999444  59999999999999999887321000  111222234456778877554 799999999999999


Q ss_pred             ccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEeecCCCCCC
Q 018591          243 GNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQASPNAVGGG  319 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~  319 (353)
                      ...+    .+......|...|.+++.+  ++++++++.|+.|.-|...+.+. .........|...|.+++..++     
T Consensus       232 ~~~g----TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----  302 (691)
T KOG2048|consen  232 SIFG----TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----  302 (691)
T ss_pred             ccCc----chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----
Confidence            9998    7788888899999998875  68999999999999998877654 3333445678889999999965     


Q ss_pred             eEEEEccCCCeEEEEEcCC
Q 018591          320 FLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       320 ~~l~s~~~dg~i~iw~~~~  338 (353)
                       .+++|+.|..+.+-....
T Consensus       303 -~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  303 -ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             -eEEecceeeEEEEccccc
Confidence             999999999998876665

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.4e-27  Score=195.45  Aligned_cols=246  Identities=23%  Similarity=0.412  Sum_probs=205.6

Q ss_pred             EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeee
Q 018591           29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK  106 (353)
Q Consensus        29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  106 (353)
                      ++....+-.+++||.+      .+..|...+.++..-  +..+++|+.|..+-+|.+.....                  
T Consensus         7 ~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~------------------   62 (825)
T KOG0267|consen    7 LMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA------------------   62 (825)
T ss_pred             cceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch------------------
Confidence            3444455567778754      345567777776654  78899999999999999865441                  


Q ss_pred             ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE
Q 018591          107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY  182 (353)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~  182 (353)
                                    ..-+.+|..+|.++.|+.  .+|++|+.+|+|++||++..+.++++.+|...+..+.|+|-  +.+
T Consensus        63 --------------i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a  128 (825)
T KOG0267|consen   63 --------------ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFA  128 (825)
T ss_pred             --------------hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEec
Confidence                          111348999999999998  88999999999999999999999999999999999999654  778


Q ss_pred             EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccccee
Q 018591          183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA  262 (353)
Q Consensus       183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .++.|..+++||++...     +...+.+|...+ ..+.|+|+|++++.++.|..+++||...+    ++..++..|...
T Consensus       129 ~gStdtd~~iwD~Rk~G-----c~~~~~s~~~vv-~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~  198 (825)
T KOG0267|consen  129 SGSTDTDLKIWDIRKKG-----CSHTYKSHTRVV-DVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGK  198 (825)
T ss_pred             cccccccceehhhhccC-----ceeeecCCccee-EEEeecCCCceeeccCCcceeeeeccccc----cccccccccccc
Confidence            89999999999999766     788888876655 99999999999999999999999999988    788888999999


Q ss_pred             EEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591          263 VLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       263 v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg  329 (353)
                      +.++.++  .-+++.|+.|+++++||+++.+   .+.........|.+++|+|+    ++.+++|..+.
T Consensus       199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe---~I~s~~~~~~~v~~~~fn~~----~~~~~~G~q~s  260 (825)
T KOG0267|consen  199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFE---VISSGKPETDGVRSLAFNPD----GKIVLSGEQIS  260 (825)
T ss_pred             ccccccCchhhhhccCCCCceeeeeccceeE---EeeccCCccCCceeeeecCC----ceeeecCchhh
Confidence            8888776  5688999999999999998766   56666667889999999999    99999987664

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=3.4e-25  Score=172.28  Aligned_cols=296  Identities=14%  Similarity=0.120  Sum_probs=209.9

Q ss_pred             CCCceeeeeeCccCceEEEEEC---C-cEEEEEeCCCcEEEEeCC----CceeeEEeccCceeeEEEEEe---CCEEEEe
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC---G-EFILSASQGKDIIVWQQP----DLRMFTKFGHGDGSVKAVVTV---GNKVFTA   72 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~---~-~~l~s~~~dg~v~vwd~~----~~~~~~~~~~~~~~v~~~~~~---~~~l~s~   72 (353)
                      .+.....+.+-|.++|++++|+   . +++|+|+.-|+|-+||+.    ...-+..+..|.++|.+|.|+   ...+++.
T Consensus       174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence            3455667888899999999996   3 789999999999999994    234566778899999999998   5789999


Q ss_pred             cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcE
Q 018591           73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTL  150 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v  150 (353)
                      +.||+|++-|++......+....                              .....+.++.|+.  ..++.+..=|..
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f  303 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNF  303 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccce
Confidence            99999999999876521111110                              1233455666665  666777766799


Q ss_pred             EEEEcCCcee-eeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC
Q 018591          151 KVWRVADLKC-LESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG  226 (353)
Q Consensus       151 ~iwd~~~~~~-~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (353)
                      .+||+++... ...+..|...|.+++++|   -++++++.|++.+|||++.......+ ......|...+ .+..|||.+
T Consensus       304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV-~sAyFSPs~  381 (498)
T KOG4328|consen  304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSV-NSAYFSPSG  381 (498)
T ss_pred             EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceeccccccee-eeeEEcCCC
Confidence            9999998654 666778889999999944   49999999999999999977633322 23334455554 999999998


Q ss_pred             CeEEeecCCCcEEEeecc---ccccceeeeeeccccceeE----EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc
Q 018591          227 KWVYGGGSDGFVMGWEGN---VEIVRWKLACETKAHEMAV----LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI  299 (353)
Q Consensus       227 ~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~v----~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  299 (353)
                      -.|++.+.|..|+|||..   ........+..-..+....    ..+.|+..++++|-.-..|-|||-..++   .+.++
T Consensus       382 gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---~v~el  458 (498)
T KOG4328|consen  382 GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---MVCEL  458 (498)
T ss_pred             CceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE---Eeeec
Confidence            889999999999999984   2111111111111111111    2334567899999999999999988766   34443


Q ss_pred             cCC-CcCeEE-EEeecCCCCCCe-EEEEccCCCeEEEEEcCC
Q 018591          300 TGH-EGPVKC-LQASPNAVGGGF-LLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       300 ~~h-~~~v~~-~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~~  338 (353)
                      ... ...|.+ ..|+|.    +. +++-++..|.|.||--+.
T Consensus       459 ~~P~~~tI~~vn~~HP~----~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  459 HDPESSTIPSVNEFHPM----RDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             cCccccccccceeeccc----ccceeccCCccceEEEEecCC
Confidence            222 224444 478998    66 444455678898886443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-24  Score=174.15  Aligned_cols=295  Identities=18%  Similarity=0.301  Sum_probs=231.5

Q ss_pred             CCCceeeeeeCcc-CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            4 KSHRSLAVLSGHV-GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         4 ~~~~~~~~l~~h~-~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      ..+-+..++.||. ..|.+++|. +..|++.+.+|.|.-||+.+++....+....+.|++++.+  +..++.|+.||.+.
T Consensus        56 ~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~  135 (691)
T KOG2048|consen   56 NNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLY  135 (691)
T ss_pred             CCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEE
Confidence            3455567788775 589999997 9999999999999999999999999999999999999998  78899999999777


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      ..+...+.-.                              ..+.+...++.|.+++|++  ..++.|+.||.|++||..+
T Consensus       136 ~~s~~p~~I~------------------------------~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  136 DFSIGPDKIT------------------------------YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             EEecCCceEE------------------------------EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence            7776655411                              1222234568999999999  5599999999999999998


Q ss_pred             ceeeeec-------c-ccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          158 LKCLESI-------K-AHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       158 ~~~~~~~-------~-~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      +..+...       . ....-|+++.+ .++.+++|...|+|.+||...+.     +.+....|...+ .+++..+++.+
T Consensus       186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-----LiqS~~~h~adV-l~Lav~~~~d~  259 (691)
T KOG2048|consen  186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-----LIQSHSCHDADV-LALAVADNEDR  259 (691)
T ss_pred             CceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-----hhhhhhhhhcce-eEEEEcCCCCe
Confidence            8766522       1 13345778888 89999999999999999999998     788888888877 99999999999


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce---------------
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL---------------  293 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------------  293 (353)
                      +++++.|+.|..|...++...|........|...+.+++.-+..+++|+.|..+.+-.....+..               
T Consensus       260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~  339 (691)
T KOG2048|consen  260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVS  339 (691)
T ss_pred             EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceee
Confidence            99999999999999988766677777777888888888888888999998888776544321100               


Q ss_pred             ------------------EE---------------eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          294 ------------------CR---------------VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       294 ------------------~~---------------~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                                        ..               ++........|.+.+.||+    |++++.+.-. ..++|.++..
T Consensus       340 ~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPd----g~~Ia~st~~-~~~iy~L~~~  413 (691)
T KOG2048|consen  340 VAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPD----GNLIAISTVS-RTKIYRLQPD  413 (691)
T ss_pred             cCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCC----CCEEEEeecc-ceEEEEeccC
Confidence                              00               0000112235889999999    9998888643 5777877763

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.9e-26  Score=176.26  Aligned_cols=254  Identities=22%  Similarity=0.259  Sum_probs=186.8

Q ss_pred             CCEEEEecCCCcEEEEEcccCcccee-EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeE
Q 018591           66 GNKVFTAHQDSRIRVWKVSRSSENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLI  141 (353)
Q Consensus        66 ~~~l~s~~~dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l  141 (353)
                      |+++|.|+.|..|.|||++-...... ..+.....            +...........-.+|+..|.+++|+.   +.|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~s------------k~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVL  259 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKAS------------KKKKKKGKRSNSASGHTDAVLALSWNRNFRNVL  259 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhh------------hhhhhhcccccccccchHHHHHHHhccccceeE
Confidence            78999999999999999875431110 01110000            000000001111237999999999987   899


Q ss_pred             EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591          142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       142 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                      ++|+.|.+|++||+.++++...+..|...|.++.|.   +..|++|+.|+++.+.|.+....    .-..++.  ..-|.
T Consensus       260 aSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~----s~~~wk~--~g~VE  333 (463)
T KOG0270|consen  260 ASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN----SGKEWKF--DGEVE  333 (463)
T ss_pred             EecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc----cCceEEe--ccceE
Confidence            999999999999999999999999999999999993   44999999999999999996431    1122222  22258


Q ss_pred             EEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceE
Q 018591          219 SVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       219 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                      .++|.|.. ..++++..||+++-+|++...   ++..++..|...|.+++.+   ..++++++.|+.|.+|++..... .
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~  409 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-K  409 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-c
Confidence            89999864 567888999999999999874   6777888999999999987   67999999999999999876431 1


Q ss_pred             EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      .+....-.-+...|.++.|+.   --.|+.|+..+.++|||+.+...+..
T Consensus       410 ~v~~~~~~~~rl~c~~~~~~~---a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  410 SVKEHSFKLGRLHCFALDPDV---AFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             ccccccccccceeecccCCCc---ceEEEecCccceEEEeecccChhHHH
Confidence            222211122346778888874   45888999999999999988765543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.6e-24  Score=151.60  Aligned_cols=240  Identities=19%  Similarity=0.223  Sum_probs=186.2

Q ss_pred             eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--ce---eeEEeccCceeeEEEEEe------CCEEEEecCCCcE
Q 018591           12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--LR---MFTKFGHGDGSVKAVVTV------GNKVFTAHQDSRI   78 (353)
Q Consensus        12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--~~---~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~i   78 (353)
                      -+.|.+.|+|.+|+  |+++++|+.|.+|++..+..  ..   .-.++.-|.+.|..++|-      +..|++++. |..
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc  163 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA-GDC  163 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC-Ccc
Confidence            45799999999997  99999999999999976543  22   224577789999999994      445666553 455


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE-EEeCCeEEEecCCCcEEEEEcCC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL-TVYNGLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~dg~v~iwd~~~  157 (353)
                      ++|-.+-+...                              ....+.+|++.|.++ .|+.-++++|+.|.+|++||++-
T Consensus       164 ~iy~tdc~~g~------------------------------~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv  213 (350)
T KOG0641|consen  164 KIYITDCGRGQ------------------------------GFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV  213 (350)
T ss_pred             eEEEeecCCCC------------------------------cceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeec
Confidence            55544333211                              223334899999887 46669999999999999999999


Q ss_pred             ceeeeeccc--c-----CcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          158 LKCLESIKA--H-----DDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       158 ~~~~~~~~~--~-----~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      ..++..+..  |     ...|.+++..  +.+|++|-.|....+||++.++     ..+.+..|...+ .++.|+|...+
T Consensus       214 ~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-----~iq~f~phsadi-r~vrfsp~a~y  287 (350)
T KOG0641|consen  214 NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-----MIQRFHPHSADI-RCVRFSPGAHY  287 (350)
T ss_pred             cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-----eeeeeCCCccce-eEEEeCCCceE
Confidence            888887742  2     3578888883  3488999999999999999998     888888898877 99999999999


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecC
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~  288 (353)
                      +++++.|..|++-|+...............|...+..+.|.  .--+++.+.|.++.+|-+.
T Consensus       288 llt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  288 LLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999999987543333444556677777777775  4467888999999999764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=5.8e-24  Score=172.36  Aligned_cols=271  Identities=15%  Similarity=0.151  Sum_probs=184.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      ++.+++++.|+.|++||+.+++.+..+..+.. +..+.|+  ++.+ ++++.++.|++||..+++     ....++    
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~----   70 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE-----VIGTLP----   70 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc-----EEEecc----
Confidence            46789999999999999999999888876543 5678887  5555 567788999999998765     221111    


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-  178 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-  178 (353)
                                             .+ ..+..+.+++  +.++ +++.++.+++||+.+.+.+..+.. ...+.++++++ 
T Consensus        71 -----------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d  125 (300)
T TIGR03866        71 -----------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD  125 (300)
T ss_pred             -----------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence                                   11 1235677877  4454 456689999999998887777653 33467888833 


Q ss_pred             C-eEEEEcCCC-cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeeeee
Q 018591          179 G-IVYSASADG-KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLACE  255 (353)
Q Consensus       179 ~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~  255 (353)
                      + .+++++.++ .+.+||.++.+     ........ ..+ ..++|+|++++++++ ..++.|++||+++++........
T Consensus       126 g~~l~~~~~~~~~~~~~d~~~~~-----~~~~~~~~-~~~-~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~  198 (300)
T TIGR03866       126 GKIVVNTSETTNMAHFIDTKTYE-----IVDNVLVD-QRP-RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE  198 (300)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCe-----EEEEEEcC-CCc-cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence            3 676776654 46778987765     22222222 223 779999999988654 46899999999887432221111


Q ss_pred             ccc-c--c--eeEEEEEEcCcEEEE-ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc-cCC
Q 018591          256 TKA-H--E--MAVLCVCLVGEFLCS-GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG-SLD  328 (353)
Q Consensus       256 ~~~-~--~--~~v~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~-~~d  328 (353)
                      ... +  .  ..-.+++++++++++ .+.++.+.+||.++++.   +..+ .+...+.+++|+|+    +++|+++ +.+
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~---~~~~-~~~~~~~~~~~~~~----g~~l~~~~~~~  270 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV---LDYL-LVGQRVWQLAFTPD----EKYLLTTNGVS  270 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE---EEEE-EeCCCcceEEECCC----CCEEEEEcCCC
Confidence            100 0  1  112345667777544 45577899999987763   2222 23457999999999    8888876 569


Q ss_pred             CeEEEEEcCCCCCccccc
Q 018591          329 KSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       329 g~i~iw~~~~~~~~~~~~  346 (353)
                      |.|++||+.+++.+...+
T Consensus       271 ~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       271 NDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             CeEEEEECCCCcEEEEEE
Confidence            999999999988766554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=6.8e-26  Score=168.06  Aligned_cols=214  Identities=19%  Similarity=0.252  Sum_probs=172.7

Q ss_pred             eeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------------------eeeeeccccCcceEEEEEeCC-
Q 018591          121 KRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------------------KCLESIKAHDDAVNGLVASKG-  179 (353)
Q Consensus       121 ~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------------------~~~~~~~~~~~~v~~i~~~~~-  179 (353)
                      ...+..|++++.+.+|++  .++++|+.|..|++.|++..                  -.++++-.|..+|+++.|+|. 
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            445568999999999999  89999999999999998621                  245667789999999999554 


Q ss_pred             -eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccc
Q 018591          180 -IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA  258 (353)
Q Consensus       180 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  258 (353)
                       .|++++.|++|++||+.....  ......+.  ...++.++.|+|.|.++++|..-..+++||+++-+.-.. ......
T Consensus       185 ~ILiS~srD~tvKlFDfsK~sa--KrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-anPd~q  259 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSA--KRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-ANPDDQ  259 (430)
T ss_pred             heEEeccCCCeEEEEecccHHH--HHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-cCcccc
Confidence             899999999999999976541  01111222  233469999999999999999999999999998743222 224567


Q ss_pred             cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEecccc-CCC-cCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          259 HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT-GHE-GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       259 ~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~h~-~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      |...|+++.++  +++.++|+.||.|++||--+++   ++.++. +|. ..|.+..|..+    ++++++.+.|..+++|
T Consensus       260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---Cv~t~~~AH~gsevcSa~Ftkn----~kyiLsSG~DS~vkLW  332 (430)
T KOG0640|consen  260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---CVRTIGNAHGGSEVCSAVFTKN----GKYILSSGKDSTVKLW  332 (430)
T ss_pred             cccceeEEEecCCccEEEEeccCCcEEeeccccHH---HHHHHHhhcCCceeeeEEEccC----CeEEeecCCcceeeee
Confidence            88999999886  8899999999999999987766   666553 454 46999999999    9999999999999999


Q ss_pred             EcCCCCCccccc
Q 018591          335 WVSKQSSTSDSE  346 (353)
Q Consensus       335 ~~~~~~~~~~~~  346 (353)
                      ++.++..+....
T Consensus       333 Ei~t~R~l~~Yt  344 (430)
T KOG0640|consen  333 EISTGRMLKEYT  344 (430)
T ss_pred             eecCCceEEEEe
Confidence            999998887654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.7e-26  Score=174.88  Aligned_cols=227  Identities=16%  Similarity=0.208  Sum_probs=176.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCce---eeEE------------------eccCceeeEEEEEe---CCEEEEecCCCcEEEE
Q 018591           26 GEFILSASQGKDIIVWQQPDLR---MFTK------------------FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~---~~~~------------------~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w   81 (353)
                      |+++|.|+.|-.|.|||+.-..   +...                  -.+|+..|.++.|+   .+.|++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            7899999999999999975211   1111                  13688899999998   7889999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~  158 (353)
                      |+++++     +                           ...+..|.+.|.++.|+|   ..|++|+.|++|.+.|.+..
T Consensus       272 D~~~g~-----p---------------------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  272 DVDTGK-----P---------------------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             EcCCCC-----c---------------------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            999987     2                           223336999999999998   89999999999999999853


Q ss_pred             eeeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecC
Q 018591          159 KCLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGS  234 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  234 (353)
                      ......-.-.+.|-.++|   ++..++++..||+++-+|+|...    .+...+..|.+.+ .++++++. ..++++++.
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd~~I-Sgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHDDEI-SGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEeccCCc-ceEEecCCCCcceeeccc
Confidence            332222223678889999   45589999999999999999875    3888999999976 99999885 457889999


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCc
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      |+.|++|++............+.-..  ..|++++   ...++.|+..+.+++||+.+..
T Consensus       395 d~~Vklw~~~~~~~~~v~~~~~~~~r--l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPKSVKEHSFKLGR--LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cceEEEEeecCCCCcccccccccccc--eeecccCCCcceEEEecCccceEEEeecccCh
Confidence            99999999987644333333333222  4455554   5688899999999999998765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=5.6e-24  Score=173.69  Aligned_cols=326  Identities=21%  Similarity=0.236  Sum_probs=231.0

Q ss_pred             ceeeeeeCccCceEEEEE--C---CcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591            7 RSLAVLSGHVGSVSSLAL--C---GEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR   79 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~--~---~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~   79 (353)
                      ..+..++||.++|+|+.+  +   ..++++|+.||.|++|.++..  ..+..+.+|...+.++.-......+...|+++.
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~  124 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVS  124 (764)
T ss_pred             eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEE
Confidence            456789999999999999  2   338999999999999998743  345566776666655543333333347899999


Q ss_pred             EEEcccCcccee------------EEeeccccccceeeeecccceeEee------cccceeeeeecCCceEEEEEeC---
Q 018591           80 VWKVSRSSENVF------------RLVDTLPTTKDYLGKFMKQSNYVQT------RRHHKRLWIEHADSISCLTVYN---  138 (353)
Q Consensus        80 ~w~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~---  138 (353)
                      +||.+..+....            .++..++....++...-.....+..      .-.....+.||.+.|.+++|..   
T Consensus       125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~  204 (764)
T KOG1063|consen  125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG  204 (764)
T ss_pred             EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence            999954431000            1122222222222222222221111      1134556779999999999986   


Q ss_pred             --CeEEEecCCCcEEEEEcCCce---------------------eee----------eccccCcceEEEEEe-CC-eEEE
Q 018591          139 --GLIYSGSWDKTLKVWRVADLK---------------------CLE----------SIKAHDDAVNGLVAS-KG-IVYS  183 (353)
Q Consensus       139 --~~l~~~~~dg~v~iwd~~~~~---------------------~~~----------~~~~~~~~v~~i~~~-~~-~l~~  183 (353)
                        -+|+++++|..|++|.+.-+.                     ...          .+.+|...|+++.|. +. .|++
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS  284 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS  284 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence              478999999999999874221                     111          123899999999994 44 8999


Q ss_pred             EcCCCcEEEEeCCCCCcccccc--eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591          184 ASADGKIKAWGKELGKSHCHSL--KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       184 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                      ++.|.++.+|...+..-.....  +....+.... .....|+|+++.+++-+..|-.++|..+ ....+.......+|..
T Consensus       285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G-F~g~lw~~n~~~ii~~g~~Gg~hlWkt~-d~~~w~~~~~iSGH~~  362 (764)
T KOG1063|consen  285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG-FWGGLWSPNSNVIIAHGRTGGFHLWKTK-DKTFWTQEPVISGHVD  362 (764)
T ss_pred             cccCcceEEEecCCccceEEEEEEeecccccccc-eeeEEEcCCCCEEEEecccCcEEEEecc-Cccceeeccccccccc
Confidence            9999999999877653211111  1122222333 3789999999999999999999999833 3345666777889999


Q ss_pred             eEEEEEEc--CcEEEEecCCCeEEEEecC-CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          262 AVLCVCLV--GEFLCSGSADKSIGIWKRE-AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       262 ~v~~~~~~--~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .|..+.|+  |.+|++.+.|.+-|+|-.- .......+...+-|.-.++|++|-+.    ...+++|.+...+|+|+...
T Consensus       363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~----~~~FVSgAdEKVlRvF~aPk  438 (764)
T KOG1063|consen  363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE----DLQFVSGADEKVLRVFEAPK  438 (764)
T ss_pred             cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC----CceeeecccceeeeeecCcH
Confidence            99999997  9999999999999998765 22335567777888889999999995    57889999999999998764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=6.4e-25  Score=163.94  Aligned_cols=285  Identities=15%  Similarity=0.204  Sum_probs=203.1

Q ss_pred             eeCccCceEEEEEC-------CcEEEEEeCCCcEEEEeCCC-c--eeeEEe--ccCceeeEEEEEe------CCEEEEec
Q 018591           12 LSGHVGSVSSLALC-------GEFILSASQGKDIIVWQQPD-L--RMFTKF--GHGDGSVKAVVTV------GNKVFTAH   73 (353)
Q Consensus        12 l~~h~~~v~~~~~~-------~~~l~s~~~dg~v~vwd~~~-~--~~~~~~--~~~~~~v~~~~~~------~~~l~s~~   73 (353)
                      ...|..+|..++|+       .+.+++++. ..+.+|.... +  ..++.+  +.|......++|.      .-+++.++
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            34688999999995       456777766 5788998653 2  334443  2356677777775      34788999


Q ss_pred             CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591           74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL  150 (353)
Q Consensus        74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v  150 (353)
                      .-|.|++.|+.+++     +                           ...+.+|...|+.+.+.|   +++++++.|..|
T Consensus       113 ~~GvIrVid~~~~~-----~---------------------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv  160 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQ-----C---------------------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV  160 (385)
T ss_pred             ceeEEEEEecchhh-----h---------------------------ccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence            99999999998876     1                           223348999999999999   699999999999


Q ss_pred             EEEEcCCceeeeec---cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccc-ccc-------------------
Q 018591          151 KVWRVADLKCLESI---KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHC-HSL-------------------  205 (353)
Q Consensus       151 ~iwd~~~~~~~~~~---~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~-------------------  205 (353)
                      ++||+++..++..+   .+|...|.++.|  .++++++++.|.+|++|++...+... ...                   
T Consensus       161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~  240 (385)
T KOG1034|consen  161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH  240 (385)
T ss_pred             EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence            99999999999887   679999999999  45599999999999999998443100 000                   


Q ss_pred             ---eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc-ccc---------ceeeeeeccccce--eEEEEEEc-
Q 018591          206 ---KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV-EIV---------RWKLACETKAHEM--AVLCVCLV-  269 (353)
Q Consensus       206 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~---------~~~~~~~~~~~~~--~v~~~~~~-  269 (353)
                         ......|...+ .|+.|-  |+++++-+-++.|..|.... ++.         ......++.....  .-..++++ 
T Consensus       241 fp~fst~diHrnyV-DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~  317 (385)
T KOG1034|consen  241 FPDFSTTDIHRNYV-DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP  317 (385)
T ss_pred             cccccccccccchH-HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH
Confidence               00111222322 444444  56889988899999998722 111         1112222222222  23444445 


Q ss_pred             -CcEEEEecCCCeEEEEecCCCcceEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          270 -GEFLCSGSADKSIGIWKREAFGKLCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       270 -~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                       ++.||.|...|.|++||+++.+... ..++.  .-...|...+|+.|    +.+|+...+|++|.-||.-
T Consensus       318 ~~~~la~gnq~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS~d----gs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  318 WQKMLALGNQSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFSRD----GSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HHHHHhhccCCCcEEEEECCCCCCcc-CceEEeccccceeeeeeeccc----CcEEEEEeCCCcEEEEEee
Confidence             7899999999999999999876431 11221  22457999999999    9999999999999999854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6e-25  Score=164.90  Aligned_cols=276  Identities=15%  Similarity=0.230  Sum_probs=197.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      ..+|++-+.|.|++||..+++.+..+++++..++.+.|.    +..+.+++.||+|++||++...+..            
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a------------  108 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA------------  108 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh------------
Confidence            568899999999999999999999999999999999886    5789999999999999998765321            


Q ss_pred             eeeeecccceeEeecccceeeeeecC-CceEEEEEeC--CeEEEec----CCCcEEEEEcCCcee-eeec-cccCcceEE
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN--GLIYSGS----WDKTLKVWRVADLKC-LESI-KAHDDAVNG  173 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~~~~----~dg~v~iwd~~~~~~-~~~~-~~~~~~v~~  173 (353)
                                        ...+.+++ .+..|++.+-  +.+++|+    .+-.|.+||++..+. +..+ +.|...|++
T Consensus       109 ------------------~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~  170 (376)
T KOG1188|consen  109 ------------------RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ  170 (376)
T ss_pred             ------------------heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence                              11222344 5677777763  6666664    467899999998766 5544 679999999


Q ss_pred             EEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccc
Q 018591          174 LVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       174 i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~  249 (353)
                      +.|   .+++|++|+.||-+.+||++.... ...+..++ .+... |..+.|..++ +.+.+-+..+...+|+++.+...
T Consensus       171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~vi-N~~sS-I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-EDALLHVI-NHGSS-IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE  247 (376)
T ss_pred             EEecCCCCCeEEeecccceEEeeecCCCcc-hhhHHHhh-cccce-eeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence            999   456999999999999999986641 11222222 23333 5899998876 56888889999999999887533


Q ss_pred             eeeeeecc---------ccceeEEEEEEc-CcEEEEecC-CCeEEEEecC---CCcceEEeccccC-CCcCeEEEEeecC
Q 018591          250 WKLACETK---------AHEMAVLCVCLV-GEFLCSGSA-DKSIGIWKRE---AFGKLCRVGAITG-HEGPVKCLQASPN  314 (353)
Q Consensus       250 ~~~~~~~~---------~~~~~v~~~~~~-~~~l~~~~~-dg~i~iw~~~---~~~~~~~~~~~~~-h~~~v~~~~~~~~  314 (353)
                      ........         .-..-|-+..+. ....+.++. -|...++-+.   ++.....+..+++ |..-|+++.|...
T Consensus       248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~  327 (376)
T KOG1188|consen  248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK  327 (376)
T ss_pred             hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence            22221100         111223344343 344444443 5666666543   3333445566666 7778899999877


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                          +.++.||++||.+.+|..+..
T Consensus       328 ----~~~l~TGGEDG~l~~Wk~~da  348 (376)
T KOG1188|consen  328 ----NDVLYTGGEDGLLQAWKVEDA  348 (376)
T ss_pred             ----cceeeccCCCceEEEEecCCc
Confidence                899999999999999996443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.9e-24  Score=181.80  Aligned_cols=244  Identities=19%  Similarity=0.245  Sum_probs=193.3

Q ss_pred             ccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc
Q 018591           53 GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS  130 (353)
Q Consensus        53 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (353)
                      ..|....+.++|+  |++|++++.||.|++|+.....+.+-                               .+..+...
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-------------------------------ti~~~g~~   58 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-------------------------------TIDISGEL   58 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-------------------------------hhhccCce
Confidence            3577778889997  88999999999999999766531110                               01127778


Q ss_pred             eEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591          131 ISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       131 i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  208 (353)
                      |.+++...++|++|+.+++|.+|...+++.-..+....-++.+++++  +.+++.|+.|-.|++-+..+..     ....
T Consensus        59 v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-----~~~~  133 (933)
T KOG1274|consen   59 VSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-----QEKV  133 (933)
T ss_pred             eEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----hhee
Confidence            88999888999999999999999998887665555567889999994  4499999999999999999887     6788


Q ss_pred             eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc----ceeE--EEEEEcCcEEEEecCCCeE
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH----EMAV--LCVCLVGEFLCSGSADKSI  282 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~v--~~~~~~~~~l~~~~~dg~i  282 (353)
                      +++|...+ .++.|+|++++||+.+.||.|++||+..+.....+....+..    ...+  .++.|++..++....|+.|
T Consensus       134 lrgh~apV-l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V  212 (933)
T KOG1274|consen  134 LRGHDAPV-LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV  212 (933)
T ss_pred             ecccCCce-eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence            89998877 999999999999999999999999999874333222221111    2223  3444557788888999999


Q ss_pred             EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .+|+..+++....+.. ..+...+..+.|+|.    |+|||+++.||.|.|||+++
T Consensus       213 kvy~r~~we~~f~Lr~-~~~ss~~~~~~wsPn----G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  213 KVYSRKGWELQFKLRD-KLSSSKFSDLQWSPN----GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEccCCceeheeecc-cccccceEEEEEcCC----CcEEeeeccCCcEEEEeccc
Confidence            9999998875444432 234445999999999    99999999999999999996

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=2.6e-25  Score=175.19  Aligned_cols=253  Identities=22%  Similarity=0.348  Sum_probs=194.3

Q ss_pred             cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCce
Q 018591           54 HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI  131 (353)
Q Consensus        54 ~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  131 (353)
                      .|...|.++.++  .+++++|+. |.|+|||+.......  .+..++..                         .....|
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~--PvsqLdcl-------------------------~rdnyi  468 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS--PVSQLDCL-------------------------NRDNYI  468 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC--cccccccc-------------------------Ccccce
Confidence            467778888887  678899887 799999997653111  11111110                         234567


Q ss_pred             EEEEEeC--CeEEEecCCCcEEEEEcCCceee--eeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccc
Q 018591          132 SCLTVYN--GLIYSGSWDKTLKVWRVADLKCL--ESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSL  205 (353)
Q Consensus       132 ~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~  205 (353)
                      .++...+  +.|++|+.-.++.|||+....+.  .++.......++++.+++  ..+++..||.|.|||+.+..     +
T Consensus       469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-----~  543 (705)
T KOG0639|consen  469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-----L  543 (705)
T ss_pred             eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----e
Confidence            7777777  89999999999999999765443  333333345666777544  88899999999999999987     8


Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEE
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIG  283 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~  283 (353)
                      .+.+++|.+.. .|+.++++|..|.+|+-|.+|+.||++.+....+     ......|.++  +|.+..|++|..++.+.
T Consensus       544 VrqfqGhtDGa-scIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~dWlavGMens~ve  617 (705)
T KOG0639|consen  544 VRQFQGHTDGA-SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTGDWLAVGMENSNVE  617 (705)
T ss_pred             eecccCCCCCc-eeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCccceeeecccCcEE
Confidence            99999999998 9999999999999999999999999998742211     1123344444  55699999999999999


Q ss_pred             EEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCC-CcccC
Q 018591          284 IWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK-SIISC  353 (353)
Q Consensus       284 iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~c  353 (353)
                      +-.....+    ...+.-|++.|.++.|.+.    |+++++.+.|+-+..|...-+..+.+.++. +.++|
T Consensus       618 vlh~skp~----kyqlhlheScVLSlKFa~c----GkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsC  680 (705)
T KOG0639|consen  618 VLHTSKPE----KYQLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC  680 (705)
T ss_pred             EEecCCcc----ceeecccccEEEEEEeccc----CceeeecCchhhhhhccCccccceeeccccCcceee
Confidence            98876554    2335669999999999999    999999999999999999999988877654 45554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.3e-24  Score=165.11  Aligned_cols=203  Identities=21%  Similarity=0.314  Sum_probs=163.3

Q ss_pred             eeeCccCceEEEEEC----CcEEEEEeCCCcEEEEeCCC----------------ceeeEEeccCceeeEEEEEe---CC
Q 018591           11 VLSGHVGSVSSLALC----GEFILSASQGKDIIVWQQPD----------------LRMFTKFGHGDGSVKAVVTV---GN   67 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~---~~   67 (353)
                      ..-+|.+.++-+..+    ..+.++=+..|.|.||++..                .+++.++.+|.+.=++++|+   ..
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            344677777777664    34666677889999999642                35677888999888999998   46


Q ss_pred             EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEe
Q 018591           68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSG  144 (353)
Q Consensus        68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~  144 (353)
                      .|++|.--+.|++|...++.-   . +                         ..+-+.+|+..|-.+.|+|   +.|++|
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W---~-v-------------------------d~~Pf~gH~~SVEDLqWSptE~~vfaSc  276 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSW---K-V-------------------------DQRPFTGHTKSVEDLQWSPTEDGVFASC  276 (440)
T ss_pred             ccccCccccceEeeeeccCce---e-e-------------------------cCccccccccchhhhccCCccCceEEee
Confidence            689998889999999988641   1 1                         1122338999999999999   899999


Q ss_pred             cCCCcEEEEEcCCc---eeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          145 SWDKTLKVWRVADL---KCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       145 ~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                      +.||+|+|||++.+   .++.+ +.|.+.|+.|.|+..  +|++|+.||+++|||+++-+..  .+...++.|...+ ++
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~fk~Hk~pI-ts  352 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVATFKYHKAPI-TS  352 (440)
T ss_pred             ecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--CcceeEEeccCCe-eE
Confidence            99999999999987   34444 789999999999443  8999999999999999977632  5777888898876 99


Q ss_pred             EEEcCC-CCeEEeecCCCcEEEeecccc
Q 018591          220 VVVSDD-GKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       220 ~~~~~~-~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      +.|+|. ...|++++.|..|.+||+...
T Consensus       353 ieW~p~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  353 IEWHPHEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             EEeccccCceEEeccCCCcEEEEEeecc
Confidence            999995 567889999999999998764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.5e-24  Score=185.57  Aligned_cols=263  Identities=21%  Similarity=0.294  Sum_probs=196.4

Q ss_pred             ccCceeeEEEEEe--CCEEEEec--CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591           53 GHGDGSVKAVVTV--GNKVFTAH--QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA  128 (353)
Q Consensus        53 ~~~~~~v~~~~~~--~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (353)
                      .|+...|.++..+  +..+++|+  .||.+++|+.+.--......-..                    ..........|.
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~--------------------l~k~l~~m~~h~   69 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN--------------------LPKHLCTMDDHD   69 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcc--------------------cchhheeecccc
Confidence            4556778888876  78899999  99999999975421000000000                    112233444899


Q ss_pred             CceEEEEEeC--CeEEEecCCCcEEEEEcCC------------------ceeeeeccccCcceEEEEEeCC--eEEEEcC
Q 018591          129 DSISCLTVYN--GLIYSGSWDKTLKVWRVAD------------------LKCLESIKAHDDAVNGLVASKG--IVYSASA  186 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~  186 (353)
                      +.|+|+.|++  .+||+|+.|+.|.+|+...                  .+++..+.+|...|..++|+++  ++++++.
T Consensus        70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~  149 (942)
T KOG0973|consen   70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL  149 (942)
T ss_pred             CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence            9999999999  8999999999999998762                  2366778899999999999543  9999999


Q ss_pred             CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc--ccceeE-
Q 018591          187 DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK--AHEMAV-  263 (353)
Q Consensus       187 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~v-  263 (353)
                      |++|.+||.++.+     ....+.+|...+ ..+.|.|-|++|++-+.|++|++|.+..-.........+.  ...... 
T Consensus       150 DnsViiwn~~tF~-----~~~vl~~H~s~V-KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~  223 (942)
T KOG0973|consen  150 DNSVIIWNAKTFE-----LLKVLRGHQSLV-KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL  223 (942)
T ss_pred             cceEEEEccccce-----eeeeeecccccc-cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence            9999999999987     889999999987 9999999999999999999999999665321111111111  111222 


Q ss_pred             -EEEEEcCcEEEEecC----CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC---CC-C-----CC----eEEEEc
Q 018591          264 -LCVCLVGEFLCSGSA----DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN---AV-G-----GG----FLLYSG  325 (353)
Q Consensus       264 -~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~-~-----~~----~~l~s~  325 (353)
                       .+++|+|.+|++.-.    -.++.|.+..+.+   .-..+-||.+++.++.|+|.   .+ +     ..    ..+|+|
T Consensus       224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg  300 (942)
T KOG0973|consen  224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG  300 (942)
T ss_pred             ecccCCCcCeecchhhccCCcceeEEEecCCce---eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence             455667999998643    3468888876665   55668899999999999984   11 0     01    278999


Q ss_pred             cCCCeEEEEEcCCCCCccc
Q 018591          326 SLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       326 ~~dg~i~iw~~~~~~~~~~  344 (353)
                      |.|++|-||.....+++..
T Consensus       301 SqDrSlSVW~T~~~RPl~v  319 (942)
T KOG0973|consen  301 SQDRSLSVWNTALPRPLFV  319 (942)
T ss_pred             cCCccEEEEecCCCCchhh
Confidence            9999999999987776653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.1e-26  Score=190.19  Aligned_cols=204  Identities=25%  Similarity=0.433  Sum_probs=179.4

Q ss_pred             ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcc
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSH  201 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~  201 (353)
                      .|...+.++..-.  ..+++|+.|..+-+|.+.....+..+.+|..+|.++.|  ...++++|+.+|+|++||+...+  
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk--  103 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK--  103 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh--
Confidence            6888888888644  88999999999999999888888889999999999999  44589999999999999999887  


Q ss_pred             cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEE--EEEcCcEEEEecCC
Q 018591          202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLC--VCLVGEFLCSGSAD  279 (353)
Q Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d  279 (353)
                         ..+.+.+|...+ .++.|+|-+.+++.|+.|..+.+||.+..    .+...+.+|...+.+  +.|+|++++.|+.|
T Consensus       104 ---~vrtLtgh~~~~-~sv~f~P~~~~~a~gStdtd~~iwD~Rk~----Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed  175 (825)
T KOG0267|consen  104 ---IVRTLTGHLLNI-TSVDFHPYGEFFASGSTDTDLKIWDIRKK----GCSHTYKSHTRVVDVLRLSPDGRWVASGGED  175 (825)
T ss_pred             ---hhhhhhccccCc-ceeeeccceEEeccccccccceehhhhcc----CceeeecCCcceeEEEeecCCCceeeccCCc
Confidence               788999999887 99999999999999999999999999965    466666777766554  56679999999999


Q ss_pred             CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ..++|||...++   .+.++..|++.+.++.|+|.    .-++++||.|+++++||+++.+.+.+.+
T Consensus       176 ~tvki~d~~agk---~~~ef~~~e~~v~sle~hp~----e~Lla~Gs~d~tv~f~dletfe~I~s~~  235 (825)
T KOG0267|consen  176 NTVKIWDLTAGK---LSKEFKSHEGKVQSLEFHPL----EVLLAPGSSDRTVRFWDLETFEVISSGK  235 (825)
T ss_pred             ceeeeecccccc---cccccccccccccccccCch----hhhhccCCCCceeeeeccceeEEeeccC
Confidence            999999999888   78889999999999999999    8899999999999999999776665444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=1.2e-24  Score=165.28  Aligned_cols=208  Identities=21%  Similarity=0.300  Sum_probs=166.9

Q ss_pred             ecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC----------------ceeeeeccccCcceEEEEEeC---CeEE
Q 018591          126 EHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD----------------LKCLESIKAHDDAVNGLVASK---GIVY  182 (353)
Q Consensus       126 ~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~i~~~~---~~l~  182 (353)
                      .|.+.++-+...+    .+.++=+..|.|++||+..                .+++.++.+|...=++++|++   +.++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            5666666666555    4666668899999999853                346777888999999999965   4788


Q ss_pred             EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591          183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                      +|.--+.|++|...++.  ...-...+.+|...+ ..++|||. ...|++++.||.|+|||++.+......  ..+.|..
T Consensus       229 sGDc~~~I~lw~~~~g~--W~vd~~Pf~gH~~SV-EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~--~~kAh~s  303 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGS--WKVDQRPFTGHTKSV-EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV--STKAHNS  303 (440)
T ss_pred             cCccccceEeeeeccCc--eeecCccccccccch-hhhccCCccCceEEeeecCceEEEEEecCCCcccee--EeeccCC
Confidence            88888999999988865  222334566687776 99999996 468899999999999999987433222  3378888


Q ss_pred             eEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          262 AVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       262 ~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      .|..++|+  -.+||+|+.||+++|||++..+.-.++..++-|..+|+++.|+|..   ...++++|.|..|.+||+.-.
T Consensus       304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e---~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE---DSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc---CceEEeccCCCcEEEEEeecc
Confidence            99999998  3389999999999999999877667888999999999999999973   568888999999999998755


Q ss_pred             CC
Q 018591          340 SS  341 (353)
Q Consensus       340 ~~  341 (353)
                      ..
T Consensus       381 ~D  382 (440)
T KOG0302|consen  381 AD  382 (440)
T ss_pred             CC
Confidence            43

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=3.8e-24  Score=173.55  Aligned_cols=120  Identities=16%  Similarity=0.190  Sum_probs=103.1

Q ss_pred             eeEEEEcC-CCCeEEeecCCCcEEEeeccccc---cceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCC
Q 018591          217 LNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEI---VRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       217 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~  289 (353)
                      |+.+.|.| |...|++++.||.|++|.+..+.   ........+..|...|+++.|.   .+.|++++.|-+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            57788888 56789999999999999987753   2334556678899999999987   67999999999999999999


Q ss_pred             CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      .+   ....+.+|++.|..++|+|+    |+.+++.+.||+|++|+-.+++..-
T Consensus       710 ~~---~~~~l~gHtdqIf~~AWSpd----Gr~~AtVcKDg~~rVy~Prs~e~pv  756 (1012)
T KOG1445|consen  710 AK---LYSRLVGHTDQIFGIAWSPD----GRRIATVCKDGTLRVYEPRSREQPV  756 (1012)
T ss_pred             hh---hhheeccCcCceeEEEECCC----CcceeeeecCceEEEeCCCCCCCcc
Confidence            87   56678999999999999999    9999999999999999988766543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=6e-24  Score=172.00  Aligned_cols=271  Identities=18%  Similarity=0.203  Sum_probs=187.5

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEE--eccCceeeEEEEEe---CCEEEEecCCCcEEEE
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTV---GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w   81 (353)
                      +.....|..+|..+.|-  ...|++++.|.++++||+++.++...  +.+|.+.|.+++|.   ...+++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            45667899999999995  56899999999999999999998877  89999999999997   6789999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc----eEEEEEeC-CeEEEecC-CCcEEEEEc
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS----ISCLTVYN-GLIYSGSW-DKTLKVWRV  155 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~-~~l~~~~~-dg~v~iwd~  155 (353)
                      |++-..........     .......-.............+.+..+...    |+.+.|-. ..|++++. |+.|++||+
T Consensus       173 D~R~n~~d~~e~~~-----~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  173 DCRCNGVDALEEFD-----NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             EEeccchhhHHHHh-----hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence            99765411100000     000000000000111111222333344444    44556655 88888887 999999999


Q ss_pred             CCceeeeec--------ccc---CcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce-eeEEE
Q 018591          156 ADLKCLESI--------KAH---DDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS-LNSVV  221 (353)
Q Consensus       156 ~~~~~~~~~--------~~~---~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~  221 (353)
                      +........        .-|   .-.+.++..  .+.+|++.+.|+.|+.||+.....   .+...+.++.... ...-.
T Consensus       248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~---sP~~~~sg~~~~sf~vks~  324 (720)
T KOG0321|consen  248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI---SPVAEFSGKLNSSFYVKSE  324 (720)
T ss_pred             cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc---CchhhccCcccceeeeeee
Confidence            875543322        122   234566666  345777777799999999987652   2333444443222 13345


Q ss_pred             EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCC
Q 018591          222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .+|++.++++|+.|....+|.+....   .....+.+|...|+++.|.   -.-+++++.|..+++|++.++
T Consensus       325 lSpd~~~l~SgSsd~~ayiw~vs~~e---~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  325 LSPDDCSLLSGSSDEQAYIWVVSSPE---APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cCCCCceEeccCCCcceeeeeecCcc---CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            68999999999999999999998863   4455677899999999885   335677799999999999654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=9.3e-24  Score=166.28  Aligned_cols=263  Identities=16%  Similarity=0.157  Sum_probs=194.7

Q ss_pred             CCCcEEEEeCCCceeeEEeccC--ceeeEEEEEe-CCEEEEe--cCCCcEEEEEcccCccceeEEeeccccccceeeeec
Q 018591           34 QGKDIIVWQQPDLRMFTKFGHG--DGSVKAVVTV-GNKVFTA--HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM  108 (353)
Q Consensus        34 ~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~-~~~l~s~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (353)
                      ....+++||+...+....+.+|  ...+.+++|. .+.|+++  +.|..+++|.-.... ..+..+....          
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-~~Vp~~~k~~----------   78 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-PEVPRVRKLT----------   78 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC-Cccceeeccc----------
Confidence            3347999999887777666555  3358888888 5545554  466778888765442 1222222211          


Q ss_pred             ccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEE
Q 018591          109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSA  184 (353)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~  184 (353)
                                       +.  .-.|++...  .++++|+..+.|+|||++...+.+.++.|...|+++.+  .+.+++++
T Consensus        79 -----------------gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsv  139 (673)
T KOG4378|consen   79 -----------------GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASV  139 (673)
T ss_pred             -----------------cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEe
Confidence                             11  222333322  78999999999999999987788889999999999999  45599999


Q ss_pred             cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591          185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV  263 (353)
Q Consensus       185 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  263 (353)
                      +..|.|.+..+.++.     ....+....+..+.-+.|+|..+ +|.+++.+|.|.+||+....+   .......|..+.
T Consensus       140 s~gGdiiih~~~t~~-----~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~  211 (673)
T KOG4378|consen  140 SDGGDIIIHGTKTKQ-----KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPC  211 (673)
T ss_pred             ccCCcEEEEecccCc-----cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCc
Confidence            999999999999886     45566666566668899999765 466789999999999988642   223345566665


Q ss_pred             EEE--EEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          264 LCV--CLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       264 ~~~--~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      ..+  +|. ..+|++.+.|..|.+||........++    ....+.++++|+++    |.+|+.|...|.|..||++..+
T Consensus       212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l----~y~~Plstvaf~~~----G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL----TYSHPLSTVAFSEC----GTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             CcceecCCccceEEEecccceEEEeeccccccccee----eecCCcceeeecCC----ceEEEeecCCceEEEEecccCC
Confidence            444  443 678999999999999999876532222    34678999999999    9999999999999999998765


Q ss_pred             Cc
Q 018591          341 ST  342 (353)
Q Consensus       341 ~~  342 (353)
                      ..
T Consensus       284 ~P  285 (673)
T KOG4378|consen  284 AP  285 (673)
T ss_pred             CC
Confidence            43

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=160.22  Aligned_cols=292  Identities=10%  Similarity=0.105  Sum_probs=207.6

Q ss_pred             eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC------ceeeEEec-cCceeeEEEEEe--CCEEEEecCCCcE
Q 018591           10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD------LRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDSRI   78 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~------~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i   78 (353)
                      +-+.+|.+.|+++.|+  +++|++|+.|..+++|+++.      .+++.... +|...|.+++|+  +.++++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            4567999999999996  89999999999999999753      35555554 456899999999  6789999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~  156 (353)
                      ..-|+++.+     .+..+..                         ....+.|..+..+|  +.+++.+.++.|.+||.+
T Consensus       130 I~HDiEt~q-----si~V~~~-------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  130 IKHDIETKQ-----SIYVANE-------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             Eeeecccce-----eeeeecc-------------------------cCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            999999876     2221110                         02345899999999  899999999999999998


Q ss_pred             Cce-eeee--ccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccce--eeeeccCCceeeEEEEcCCCCe
Q 018591          157 DLK-CLES--IKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLK--GILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       157 ~~~-~~~~--~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      ... ....  +.........+.|   .|.+|++.+..+.+.+||.+.........-  ..+..... ....+.|+|+|..
T Consensus       180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~-~~M~~~~~~~G~Q  258 (609)
T KOG4227|consen  180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT-EWMGSLWSPSGNQ  258 (609)
T ss_pred             CCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch-hhhheeeCCCCCe
Confidence            654 2221  1223455667777   345899999999999999987652111110  01111111 1257889999999


Q ss_pred             EEeecCCCcEEEeeccccccc-eeeeeeccc--cceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcc------------
Q 018591          229 VYGGGSDGFVMGWEGNVEIVR-WKLACETKA--HEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGK------------  292 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~--~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~------------  292 (353)
                      +++--....-.+||+.+..+. ++.-....+  ....+.++.+- ...+++|+.+-.|++|.+.....            
T Consensus       259 ~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~  338 (609)
T KOG4227|consen  259 FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE  338 (609)
T ss_pred             ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchh
Confidence            998877777788888774211 111100001  12234455553 45699999999999998753210            


Q ss_pred             --------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          293 --------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       293 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                              -..+..++||.+-++.+.|+|.    ..+|++.+-...+++|.-
T Consensus       339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H----~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQH----NNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             hCchhheecceeEEEecccccccceeecCC----cceEeccchhhheecccc
Confidence                    1234568899999999999999    889999999999999963

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=3.9e-23  Score=162.82  Aligned_cols=253  Identities=15%  Similarity=0.198  Sum_probs=188.6

Q ss_pred             ceEEEEEC-CcEEEEEe--CCCcEEEEeCCC--ce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcc
Q 018591           18 SVSSLALC-GEFILSAS--QGKDIIVWQQPD--LR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        18 ~v~~~~~~-~~~l~s~~--~dg~v~vwd~~~--~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      .+.++.|+ .++|++++  .|..+++|.-..  ++  .+....+.  .-.|++..  ..++++|+..+.|+|||+.... 
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKL-  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHH-
Confidence            48889996 55466554  577899997322  22  22223332  22233222  5789999999999999998543 


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                          +.                           +.+.+|+..|+++.++.  .+|++++..|.|.+..+.++.....|..
T Consensus       113 ----~h---------------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~  161 (673)
T KOG4378|consen  113 ----IH---------------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI  161 (673)
T ss_pred             ----Hh---------------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence                21                           22238999999999998  8999999999999999999888777765


Q ss_pred             c-CcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEe
Q 018591          167 H-DDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGW  241 (353)
Q Consensus       167 ~-~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~  241 (353)
                      . ...|.-+.+++.   +|.+++.+|.|.+||+....    +.....+.|..+. ..++|+|. ..+|++.+.|..|.+|
T Consensus       162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s----p~~~~~~~HsAP~-~gicfspsne~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS----PIFHASEAHSAPC-RGICFSPSNEALLVSVGYDKKINIY  236 (673)
T ss_pred             CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC----cccchhhhccCCc-CcceecCCccceEEEecccceEEEe
Confidence            4 345557777443   88899999999999998776    2334445565554 89999995 5678899999999999


Q ss_pred             eccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          242 EGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      |.........+   ...|+....++..+|.+|++|...|.|..||++..+.  ++..+..|...|++++|-|.
T Consensus       237 D~~s~~s~~~l---~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  237 DIRSQASTDRL---TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             eccccccccee---eecCCcceeeecCCceEEEeecCCceEEEEecccCCC--CceEeeecccceeEEEeeec
Confidence            99876322222   2345566677777899999999999999999998665  67778899999999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.9e-22  Score=150.44  Aligned_cols=269  Identities=19%  Similarity=0.205  Sum_probs=186.6

Q ss_pred             EEEEeCCCcee-----eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           38 IIVWQQPDLRM-----FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        38 v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      .+-|+.+....     +..+++|.+.|++++|+  |.+|++++.|+.|++|+++.-....-++++.-             
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-------------  129 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-------------  129 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-------------
Confidence            44565544333     34568999999999998  89999999999999999986432211111110             


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce---eee---------eccccCcceEEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK---CLE---------SIKAHDDAVNGLV  175 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~---~~~---------~~~~~~~~v~~i~  175 (353)
                                     -.-+.-+.+.|.|   ..+++.-....+++|-+...+   ...         .-+.|.-.+..+-
T Consensus       130 ---------------ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG  194 (420)
T KOG2096|consen  130 ---------------VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG  194 (420)
T ss_pred             ---------------ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEe
Confidence                           0112345678888   566666677789999764321   110         1123555666666


Q ss_pred             EeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc----cc
Q 018591          176 ASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI----VR  249 (353)
Q Consensus       176 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~  249 (353)
                      ..++  ++++++.|..|.+|+++ ++     .+.......... ...+.||+|+++++++....|++|.+--.+    ..
T Consensus       195 iA~~~k~imsas~dt~i~lw~lk-Gq-----~L~~idtnq~~n-~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqe  267 (420)
T KOG2096|consen  195 IAGNAKYIMSASLDTKICLWDLK-GQ-----LLQSIDTNQSSN-YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQE  267 (420)
T ss_pred             ecCCceEEEEecCCCcEEEEecC-Cc-----eeeeeccccccc-cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhh
Confidence            6333  89999999999999999 55     566666665555 788999999999999999999999863221    22


Q ss_pred             eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC----cceEEeccc----cCCCcCeEEEEeecCCCCCC
Q 018591          250 WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF----GKLCRVGAI----TGHEGPVKCLQASPNAVGGG  319 (353)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~  319 (353)
                      ......+++|...|..++|+  ...+++.+.||++++||.+-.    +.+..+.+.    ....+.-..++.+|.    |
T Consensus       268 v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~----g  343 (420)
T KOG2096|consen  268 VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS----G  343 (420)
T ss_pred             hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCC----C
Confidence            34566789999999988886  679999999999999997531    222222222    222334458999999    8


Q ss_pred             eEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          320 FLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       320 ~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +.|+.+.. ..++++..++++...+.+
T Consensus       344 ~~lA~s~g-s~l~~~~se~g~~~~~~e  369 (420)
T KOG2096|consen  344 DSLAVSFG-SDLKVFASEDGKDYPELE  369 (420)
T ss_pred             cEEEeecC-CceEEEEcccCccchhHH
Confidence            88887654 479999999887666554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.91  E-value=8e-22  Score=151.52  Aligned_cols=302  Identities=16%  Similarity=0.190  Sum_probs=203.2

Q ss_pred             cCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc---------eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591           16 VGSVSSLALC---GEFILSASQGKDIIVWQQPDL---------RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        16 ~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      ..+|.++.|.   .+.++||+.|..|++|.+..+         +.+..+..|...|+++.|+  |+.|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            4689999994   448999999999999986532         2445678899999999998  7799999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      ....-..     .   +...        ............+.+.+|...|..++|++  ..+++++.|+.+++||+..++
T Consensus        93 k~~~~~~-----~---~~d~--------e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   93 KQGDVRI-----F---DADT--------EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             EecCcCC-----c---cccc--------hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence            9764110     0   0000        00000011122345568999999999999  899999999999999999999


Q ss_pred             eeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCccc----------------ccceeeeeccC-CceeeEE
Q 018591          160 CLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHC----------------HSLKGILEGHK-DVSLNSV  220 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~-~~~v~~~  220 (353)
                      ....+..|...+..++|.  +.++++-+.|...+.+.+...+...                ....+.+.... ..-...+
T Consensus       157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence            999999999999999993  3478888888766666654433100                00011111111 0112568


Q ss_pred             EEcCCCCeEEeecC----CC-----cEEEeeccccccceeeeeeccccceeEEEEEEc-------------------CcE
Q 018591          221 VVSDDGKWVYGGGS----DG-----FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-------------------GEF  272 (353)
Q Consensus       221 ~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------------~~~  272 (353)
                      +|+|+|.++++...    .+     ..++|+-...   ..+...++....+...+.+.                   -++
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l---~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl  313 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL---KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL  313 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeeccccc---cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence            89999998887542    12     2344443321   12223333322222222211                   123


Q ss_pred             EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       273 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      +++....+.|++||.++...+..+..  -|-.+|++++|+++    |..|+..|.||...+-.++..+.-
T Consensus       314 vfaiAt~~svyvydtq~~~P~~~v~n--ihy~~iTDiaws~d----g~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  314 VFAIATKNSVYVYDTQTLEPLAVVDN--IHYSAITDIAWSDD----GSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             EEEEeecceEEEeccccccceEEEee--eeeeeecceeecCC----CcEEEEeccCCceEEEEEcchhcc
Confidence            33333456799999998776555544  37789999999999    999999999999888877776554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-23  Score=181.43  Aligned_cols=237  Identities=19%  Similarity=0.284  Sum_probs=191.6

Q ss_pred             cCceEEEEEC--Cc----EEEEEeCCCcEEEEeCCC------ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEE
Q 018591           16 VGSVSSLALC--GE----FILSASQGKDIIVWQQPD------LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRV   80 (353)
Q Consensus        16 ~~~v~~~~~~--~~----~l~s~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~   80 (353)
                      ...-+.++|.  +.    +||.|..||.|.+||...      ...+.....|.+.|..+.|+   ++.|++|+.||.|.|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI  143 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence            3467788884  33    589999999999999654      23556678899999999998   779999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~  157 (353)
                      ||++..+.. +...    .                         ....+.|.+++|+.   ..|++++.+|.+.|||++.
T Consensus       144 WDlnn~~tP-~~~~----~-------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~  193 (1049)
T KOG0307|consen  144 WDLNKPETP-FTPG----S-------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK  193 (1049)
T ss_pred             eccCCcCCC-CCCC----C-------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccC
Confidence            999875411 1000    0                         03567899999998   7899999999999999999


Q ss_pred             ceeeeeccccCc--ceEEEEEeCC---eEEEEcCCC---cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-Ce
Q 018591          158 LKCLESIKAHDD--AVNGLVASKG---IVYSASADG---KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KW  228 (353)
Q Consensus       158 ~~~~~~~~~~~~--~v~~i~~~~~---~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  228 (353)
                      .+++..+..+..  .+..+.|+++   .+++++.|.   .|.+||+|...    .+.+++++|...+ .++.|++.+ ++
T Consensus       194 ~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----sP~k~~~~H~~Gi-lslsWc~~D~~l  268 (1049)
T KOG0307|consen  194 KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----SPLKILEGHQRGI-LSLSWCPQDPRL  268 (1049)
T ss_pred             CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC----Cchhhhcccccce-eeeccCCCCchh
Confidence            888877765544  4778899655   677776654   48999999776    4778889999887 999999966 89


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCc
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      +++++.|+.|.+|+.+++    +....+.....++..+.|.   ...+++++-||.|.||.+....
T Consensus       269 llSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  269 LLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999999999999998    6777777777888888886   5589999999999999998754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.5e-21  Score=138.39  Aligned_cols=281  Identities=13%  Similarity=0.159  Sum_probs=190.7

Q ss_pred             eEEEEEC--CcEEEEEeCCCcEEEEeCCC---------c-eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccC
Q 018591           19 VSSLALC--GEFILSASQGKDIIVWQQPD---------L-RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        19 v~~~~~~--~~~l~s~~~dg~v~vwd~~~---------~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      |.+-+++  +++|++|..+|.|-+..+.+         + ..+-...+|.++|+.+.|...+|++|+. |.|+-|..+..
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~   91 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE   91 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Confidence            4444554  88999999999999998753         1 2344558899999999999999999886 99999998765


Q ss_pred             cccee-EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee
Q 018591           87 SENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES  163 (353)
Q Consensus        87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~  163 (353)
                      .+... +.+-...                    .+.+.-...-..|+++...|  +-++.++.|+.++-||+++++..++
T Consensus        92 ~es~~~K~lwe~~--------------------~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~  151 (325)
T KOG0649|consen   92 EESLATKRLWEVK--------------------IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE  151 (325)
T ss_pred             hhhccchhhhhhc--------------------CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence            43100 0000000                    00000012335788898887  7777777999999999999999999


Q ss_pred             ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcc----cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSH----CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      +++|+..|.++.-  ..+.+++|+.||++|+||.++.+..    .......++.+.+.-|.+++.+  ..++++|+ ...
T Consensus       152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~  228 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPK  228 (325)
T ss_pred             EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCc
Confidence            9999999999998  4559999999999999999998721    0011112222333333455544  55777765 456


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (353)
                      +.+|.++....    ...++ .+..+..+.|..+.+++++..+.|.-|.+..-  +  -..........++..|+...  
T Consensus       229 lslwhLrsse~----t~vfp-ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv--l--~a~ip~~s~~c~s~s~~~~p--  297 (325)
T KOG0649|consen  229 LSLWHLRSSES----TCVFP-IPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV--L--QANIPVESTACYSASWQTSP--  297 (325)
T ss_pred             eeEEeccCCCc----eEEEe-cccceeEeeeecceEEEeccccceeeeeeccE--E--EEeccCCccceeeecccCCc--
Confidence            99999998733    22222 24566777888889999998899999987642  1  11122223334555554331  


Q ss_pred             CCeEEEEccCCCeEEEEE
Q 018591          318 GGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       318 ~~~~l~s~~~dg~i~iw~  335 (353)
                       -+++-.++...++.|+.
T Consensus       298 -~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  298 -IKFISIAGFSNKLHILK  314 (325)
T ss_pred             -eEEEEecccceeeeeee
Confidence             46777777888887763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.2e-23  Score=179.57  Aligned_cols=267  Identities=13%  Similarity=0.171  Sum_probs=198.4

Q ss_pred             eCCCcEEEEeCC--Cce----eeEEeccCceeeEEEEEe--CC----EEEEecCCCcEEEEEcccC-ccceeEEeecccc
Q 018591           33 SQGKDIIVWQQP--DLR----MFTKFGHGDGSVKAVVTV--GN----KVFTAHQDSRIRVWKVSRS-SENVFRLVDTLPT   99 (353)
Q Consensus        33 ~~dg~v~vwd~~--~~~----~~~~~~~~~~~v~~~~~~--~~----~l~s~~~dg~i~~w~~~~~-~~~~~~~~~~~~~   99 (353)
                      +.+.++-+|.+.  +.+    .+..+.. ....+.++|.  +.    .|+.|..||.|-+||...- .......+.    
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~s-~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la----  110 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQS-SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA----  110 (1049)
T ss_pred             ccccccceeeecccCccccccccccccc-cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh----
Confidence            445566666543  222    2333322 4567888886  33    5889999999999998763 111111111    


Q ss_pred             ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec--cccCcceEEE
Q 018591          100 TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI--KAHDDAVNGL  174 (353)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~i  174 (353)
                                             ....|.+.|..+.|++   +.|++|+.||.|.|||+.+.+.-...  ......|.++
T Consensus       111 -----------------------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen  111 -----------------------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             -----------------------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence                                   1227999999999999   69999999999999999875443333  2246789999


Q ss_pred             EEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC-ceeeEEEEcCCC-CeEEeecCC---CcEEEeecccc
Q 018591          175 VASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD-VSLNSVVVSDDG-KWVYGGGSD---GFVMGWEGNVE  246 (353)
Q Consensus       175 ~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~~l~~~~~d---g~i~i~d~~~~  246 (353)
                      +|+..   .|++++.+|.+.|||++..+     ....+..+.. .-+..++|+|+. ..+++++.|   -.|.+||++..
T Consensus       168 sWNrkvqhILAS~s~sg~~~iWDlr~~~-----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a  242 (1049)
T KOG0307|consen  168 SWNRKVSHILASGSPSGRAVIWDLRKKK-----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA  242 (1049)
T ss_pred             ccchhhhHHhhccCCCCCceeccccCCC-----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence            99544   89999999999999999886     3333333332 334789999985 455555554   37999999875


Q ss_pred             ccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591          247 IVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY  323 (353)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~  323 (353)
                      .   .....+.+|...+.+++|.   ..+|++++.|+.|.+|+.++++   .+..+.....++..+.|+|..   -..++
T Consensus       243 s---sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---vl~~~p~~~nW~fdv~w~pr~---P~~~A  313 (1049)
T KOG0307|consen  243 S---SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---VLGELPAQGNWCFDVQWCPRN---PSVMA  313 (1049)
T ss_pred             C---CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---EeeecCCCCcceeeeeecCCC---cchhh
Confidence            3   4556678999999999996   5799999999999999999988   677777778899999999983   34899


Q ss_pred             EccCCCeEEEEEcCCCCC
Q 018591          324 SGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       324 s~~~dg~i~iw~~~~~~~  341 (353)
                      .++-||.|-|+.+.....
T Consensus       314 ~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  314 AASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             hheeccceeeeeeecCCc
Confidence            999999999999987653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=1.5e-20  Score=152.35  Aligned_cols=263  Identities=11%  Similarity=0.099  Sum_probs=173.4

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEE-ecCCC
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFT-AHQDS   76 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s-~~~dg   76 (353)
                      ..+++++..+.+|.. +.+++|+  ++.+ ++++.++.|++||..+++....+..+.. +..+.++  ++.+++ ++.++
T Consensus        18 ~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~   95 (300)
T TIGR03866        18 TATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDN   95 (300)
T ss_pred             CCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCC
Confidence            457788888887654 6789996  6655 6777899999999999988877765443 3556666  666654 45689


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC-cEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK-TLKVW  153 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg-~v~iw  153 (353)
                      .+++||+.+..     .+..+                            .+...+.++.++|  ..+++++.++ .+.+|
T Consensus        96 ~l~~~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~  142 (300)
T TIGR03866        96 LVTVIDIETRK-----VLAEI----------------------------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFI  142 (300)
T ss_pred             eEEEEECCCCe-----EEeEe----------------------------eCCCCcceEEECCCCCEEEEEecCCCeEEEE
Confidence            99999997654     22211                            1223356788888  6777777664 56778


Q ss_pred             EcCCceeeeeccccCcceEEEEEe-CC-eEE-EEcCCCcEEEEeCCCCCcccccceeeeeccC------CceeeEEEEcC
Q 018591          154 RVADLKCLESIKAHDDAVNGLVAS-KG-IVY-SASADGKIKAWGKELGKSHCHSLKGILEGHK------DVSLNSVVVSD  224 (353)
Q Consensus       154 d~~~~~~~~~~~~~~~~v~~i~~~-~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~  224 (353)
                      |.++++....+.. .....++.|+ ++ .++ ++..++.|++||+++++     ....+..+.      ......++|+|
T Consensus       143 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~s~  216 (300)
T TIGR03866       143 DTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-----VIKKITFEIPGVHPEAVQPVGIKLTK  216 (300)
T ss_pred             eCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-----eeeeeeecccccccccCCccceEECC
Confidence            9988777655432 3345677883 33 554 44569999999999876     322222110      11125688999


Q ss_pred             CCCeEEe-ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe-cCCCeEEEEecCCCcceEEeccccCC
Q 018591          225 DGKWVYG-GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG-SADKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       225 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                      +++++++ .+.++.+.+||.++.+.....   ..++.....++++++++|+++ +.+|.|.+||+++++   .+..+...
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~---~~~~~~~~  290 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYL---LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK---VIKSIKVG  290 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEE---EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEEEcc
Confidence            9998654 455678999999876322111   122333334455578888876 569999999999987   44444433


Q ss_pred             CcCeEEEEeec
Q 018591          303 EGPVKCLQASP  313 (353)
Q Consensus       303 ~~~v~~~~~~~  313 (353)
                       ...+.++++|
T Consensus       291 -~~~~~~~~~~  300 (300)
T TIGR03866       291 -RLPWGVVVRP  300 (300)
T ss_pred             -cccceeEeCC
Confidence             4558888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.8e-21  Score=166.62  Aligned_cols=294  Identities=21%  Similarity=0.299  Sum_probs=202.5

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccC---ceeeEEEEEe----CCEEEEecCCCcEEEEEcccCcc
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHG---DGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      +-..+.|+  ...++++...-.|+|||.+.++.+..|..+   ...|+.+.+-    ...+++|+.||.|+||+--....
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            34556665  667888877779999999999998888654   4578888874    56799999999999998544332


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                      ...+++.....-....                    .+..+.-.-+.|..  ++|++++.-..|+|||......+..+..
T Consensus      1146 ~~~eLVTaw~~Ls~~~--------------------~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQL--------------------PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred             CCceeEEeeccccccC--------------------ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc
Confidence            2233333221110000                    01111113456665  7788888789999999988887777643


Q ss_pred             -cCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-eeeEEEEcCCCC-eEEeecCCCcEEE
Q 018591          167 -HDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-SLNSVVVSDDGK-WVYGGGSDGFVMG  240 (353)
Q Consensus       167 -~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-~l~~~~~dg~i~i  240 (353)
                       ....|+++.-   .++.+++|..||.|++||.+.....  ......+.|... .|..+.+.++|- .|++|+.+|.|++
T Consensus      1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred             CCCccceeecccccCCceEEEeecCCceEEeecccCCcc--ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence             3556777766   5569999999999999999877632  355666666654 247888888664 4999999999999


Q ss_pred             eeccccccceeeeeeccccc--e-eEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccc----cCCCcCeEEEEe
Q 018591          241 WEGNVEIVRWKLACETKAHE--M-AVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAI----TGHEGPVKCLQA  311 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~--~-~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~~~~  311 (353)
                      ||++... ..... ....|.  + ..+++..  +...+|+|+. +.|.||++...+ ...+...    ....+.+.+++|
T Consensus      1284 ~DlR~~~-~e~~~-~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1284 LDLRMSS-KETFL-TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred             EecccCc-ccccc-eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeee
Confidence            9999851 11111 111111  2 3455544  5789999988 999999987532 2122111    112456899999


Q ss_pred             ecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      +|.    .-+||.|+.|.+|.||...++..
T Consensus      1360 HP~----~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1360 HPH----RLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             cch----hHhhhhccCCceEEEeecCCcCC
Confidence            999    88999999999999999877653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=1.1e-21  Score=153.01  Aligned_cols=266  Identities=16%  Similarity=0.154  Sum_probs=190.9

Q ss_pred             EeCCCceeeEEeccCceeeEEEEEe---C-CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591           41 WQQPDLRMFTKFGHGDGSVKAVVTV---G-NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT  116 (353)
Q Consensus        41 wd~~~~~~~~~~~~~~~~v~~~~~~---~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (353)
                      .|+.+-.....+..+.+.|++++|.   . +.+++|+.-|+|-+||+.+.+...                          
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--------------------------  224 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--------------------------  224 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------------------------
Confidence            3444555566677789999999998   3 688999999999999996443111                          


Q ss_pred             cccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccc--cCcceEEEEE--eCCeEEEEcCCCc
Q 018591          117 RRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKA--HDDAVNGLVA--SKGIVYSASADGK  189 (353)
Q Consensus       117 ~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~--~~~~l~~~~~dg~  189 (353)
                        ....++..|..+|.++.|+|   ..+++.+.||+|++-|++.......+..  ....+..+.+  .+..++.+..=|.
T Consensus       225 --d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~  302 (498)
T KOG4328|consen  225 --DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGN  302 (498)
T ss_pred             --CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccc
Confidence              12334458999999999999   8999999999999999987544333322  3455666666  3346666666679


Q ss_pred             EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE
Q 018591          190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL  268 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  268 (353)
                      +.+||++++..    ....+..|... |.+++++|. ..++++++.|++.+|||++.-.....+......|...|.+..|
T Consensus       303 f~~iD~R~~~s----~~~~~~lh~kK-I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF  377 (498)
T KOG4328|consen  303 FNVIDLRTDGS----EYENLRLHKKK-ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF  377 (498)
T ss_pred             eEEEEeecCCc----cchhhhhhhcc-cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence            99999998872    34455556665 499999995 4678999999999999999864444333445567777766555


Q ss_pred             --cCcEEEEecCCCeEEEEecCCC-cceEEeccccCCCc------CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          269 --VGEFLCSGSADKSIGIWKREAF-GKLCRVGAITGHEG------PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       269 --~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                        ++..|++-+.|..|+|||..-- ....++..+. |..      ......|.|+    ..++++|-.-..|-|+|-..+
T Consensus       378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~----~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPD----YNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             cCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCC----ccEEEEeccCcceeEEcCCCC
Confidence              4556999999999999998411 1111222221 221      2344679999    889999999999999998888


Q ss_pred             CCccc
Q 018591          340 SSTSD  344 (353)
Q Consensus       340 ~~~~~  344 (353)
                      +.+.+
T Consensus       453 q~v~e  457 (498)
T KOG4328|consen  453 QMVCE  457 (498)
T ss_pred             EEeee
Confidence            85554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.90  E-value=1.4e-23  Score=175.07  Aligned_cols=282  Identities=18%  Similarity=0.229  Sum_probs=210.9

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      +.+..|.||..+|+|+.|+  |.++++|+.|..|+||..+++.++....+|.+.|+.++.+  ...+++++.|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            4456788999999999997  9999999999999999999999999999999999999988  56788999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      +..+.                                +..++.+|++.|++++|+|..  +.+.||++++||.+ ..+..
T Consensus       261 l~~~~--------------------------------pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~  305 (1113)
T KOG0644|consen  261 LPDGA--------------------------------PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRI  305 (1113)
T ss_pred             cCCCc--------------------------------hHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccc
Confidence            98876                                234445999999999999933  78899999999987 22221


Q ss_pred             ec----cc-cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecC
Q 018591          163 SI----KA-HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGS  234 (353)
Q Consensus       163 ~~----~~-~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  234 (353)
                      ..    .. ....+.++.+  ....+++++.|+.-..|.+....           .+.... .-+.++.+ ..+.+++-.
T Consensus       306 y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----------~~~~~l-if~t~ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  306 YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA-----------WRSNLL-IFVTRSSDLSSIVVTARN  373 (1113)
T ss_pred             cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh-----------hhccce-EEEeccccccccceeeee
Confidence            11    11 1344556666  33488999999998888765432           111111 11111111 245666777


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEE---cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL---VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~  311 (353)
                      +-.+++|++.++    ...+...+|...+..+.+   +.+...+++.||...|||+-.+...+..  ..+| +.+..-+|
T Consensus       374 ~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y--~~gh-~kl~d~kF  446 (1113)
T KOG0644|consen  374 DHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY--FIGH-GKLVDGKF  446 (1113)
T ss_pred             eeEeeeeecccc----hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee--eccc-ceeecccc
Confidence            888999999988    556666677766666655   4667788999999999999887643332  2454 45777889


Q ss_pred             ecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      |++    |..++....-|.+.|.....++......
T Consensus       447 Sqd----gts~~lsd~hgql~i~g~gqs~s~k~ak  477 (1113)
T KOG0644|consen  447 SQD----GTSIALSDDHGQLYILGTGQSKSQKKAK  477 (1113)
T ss_pred             CCC----CceEecCCCCCceEEeccCCCccccccc
Confidence            999    9999999888999999877766555443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.2e-22  Score=159.64  Aligned_cols=298  Identities=17%  Similarity=0.199  Sum_probs=219.9

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe----CCEEEEecCCCcE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV----GNKVFTAHQDSRI   78 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~s~~~dg~i   78 (353)
                      .++...|.+|.+.|..|.|+  |..|++||.|..|.+||+..+.....+ .+|...|..-.|-    ...+++++.||.+
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            34567889999999999997  999999999999999999988877666 5677777665553    5679999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~  155 (353)
                      ++=.+......                             .....+..|.++|..++..|   ..|.+++.|+.+.-+|+
T Consensus       212 r~s~i~~t~~~-----------------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl  262 (559)
T KOG1334|consen  212 RVSEILETGYV-----------------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL  262 (559)
T ss_pred             eeeeeccccce-----------------------------ecceecccccCccceeeecCCCCCcccccccccceeeeee
Confidence            98776543210                             01122236889999999877   88999999999999999


Q ss_pred             CCceeeeec---cccCc---ceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcc------cccceeeeeccCCceeeEE
Q 018591          156 ADLKCLESI---KAHDD---AVNGLVA---SKGIVYSASADGKIKAWGKELGKSH------CHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       156 ~~~~~~~~~---~~~~~---~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~~  220 (353)
                      +...+...+   +.+..   ...+++.   +.+.+++++.|..+++||.+.-...      ...+...+......-|+++
T Consensus       263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl  342 (559)
T KOG1334|consen  263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL  342 (559)
T ss_pred             ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence            876654433   22333   4567777   3448999999999999998754421      1111122222333446999


Q ss_pred             EEcCCCCeEEeecCCCcEEEeecccccc---------ceeeeeeccccce--eEEEEEE---cCcEEEEecCCCeEEEEe
Q 018591          221 VVSDDGKWVYGGGSDGFVMGWEGNVEIV---------RWKLACETKAHEM--AVLCVCL---VGEFLCSGSADKSIGIWK  286 (353)
Q Consensus       221 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~~~--~v~~~~~---~~~~l~~~~~dg~i~iw~  286 (353)
                      +|+.++.-+.++..|-.|+++.-..+..         ........++|..  .|..+.|   ...|+++|+.-|.|.||+
T Consensus       343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence            9998888888888888899995444321         0112222566653  3555554   357999999999999999


Q ss_pred             cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      -.+++   .+..+.+...-|+||.-+|-    -..||+.|-|..|+||--.+.
T Consensus       423 K~t~e---ii~~MegDr~VVNCLEpHP~----~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  423 KKTGE---IIRFMEGDRHVVNCLEPHPH----LPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cchhH---HHHHhhcccceEeccCCCCC----CchhhccCCccceeeecCCcc
Confidence            99887   66667777779999999999    789999999999999976443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=160.48  Aligned_cols=266  Identities=15%  Similarity=0.249  Sum_probs=199.7

Q ss_pred             ceEEEEE--CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           18 SVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        18 ~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .|..++|  +|..|+.+.. ..+.+||..+|..++++++|...|++++|+  |..+++|+.|..|.+|+..-..     .
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----I   87 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-----e
Confidence            7999999  4776666554 489999999999999999999999999998  9999999999999999865432     1


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV  171 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  171 (353)
                      +.                             ..|...|.|+.|+|  ..|++++- ...-+|....... ...+ ....+
T Consensus        88 Lk-----------------------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k-ss~R~  135 (1081)
T KOG1538|consen   88 LK-----------------------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK-SSSRI  135 (1081)
T ss_pred             ee-----------------------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh-hheeE
Confidence            11                             17999999999999  67777765 4577898654332 2222 25678


Q ss_pred             EEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-----CeEEeecCCCcEEEeecc
Q 018591          172 NGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-----KWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       172 ~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~  244 (353)
                      .+.+| +++ +++.|-.+|+|.+-+-...+    ...-...+....+|.+++|+|+.     ..+++.....++..|.+.
T Consensus       136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls  211 (1081)
T KOG1538|consen  136 ICCSWTNDGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS  211 (1081)
T ss_pred             EEeeecCCCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence            88889 333 89999999999998654333    12222334455566999999963     467788888888888876


Q ss_pred             ccccceeeeeecccccee--EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591          245 VEIVRWKLACETKAHEMA--VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL  322 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l  322 (353)
                      ..     .+...+.-...  ..+..++|.++..|+.|+.+.+|-.+. -   .+.++.....+|+.++..|+    ++++
T Consensus       212 G~-----~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-v---rLGTvg~~D~WIWtV~~~PN----sQ~v  278 (1081)
T KOG1538|consen  212 GK-----QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-V---RLGTVGEQDSWIWTVQAKPN----SQYV  278 (1081)
T ss_pred             ce-----eecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-e---EEeeccccceeEEEEEEccC----CceE
Confidence            54     22211212222  334445799999999999999998543 3   56666667889999999999    9999


Q ss_pred             EEccCCCeEEEEEcCC
Q 018591          323 YSGSLDKSLRVWWVSK  338 (353)
Q Consensus       323 ~s~~~dg~i~iw~~~~  338 (353)
                      +.|+.||+|..|++..
T Consensus       279 ~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  279 VVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEEEccCeeehhhhHH
Confidence            9999999999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=3.9e-21  Score=147.38  Aligned_cols=231  Identities=15%  Similarity=0.189  Sum_probs=170.8

Q ss_pred             EeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           51 KFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        51 ~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      .+.+|+++|..+.|+   .+.+++||.|.+|.+|++..+.     +...+                    ..+...+.+|
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-----l~~~l--------------------tepvv~L~gH  130 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-----LTRDL--------------------TEPVVELYGH  130 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcc-----cccCc--------------------ccceEEEeec
Confidence            346899999999997   7789999999999999997765     11111                    2346667799


Q ss_pred             CCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591          128 ADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       128 ~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      ...|.-+.|+|   +.|++++.|..|.+||+.+++.+.++. |...|+++.|  +++++++.+.|..||+||.++++   
T Consensus       131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---  206 (472)
T KOG0303|consen  131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---  206 (472)
T ss_pred             ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---
Confidence            99999999999   899999999999999999999998887 9999999999  55599999999999999999998   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeec---CCCcEEEeeccccccceeeeeeccccceeEEEE-EEcCcE-EEEec
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV-CLVGEF-LCSGS  277 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~-l~~~~  277 (353)
                        +...-.+|.+..-..+.|-.++..+.+|.   .+..+-+||...-... -...++....+...-+ .++..+ .++|-
T Consensus       207 --~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtSnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  207 --VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-IALQELDTSNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             --EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-ceeEEeccCCceEEeeecCCCCEEEEEec
Confidence              66666777776557788888988555553   4678999998765322 2222333333332222 233444 45666


Q ss_pred             CCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEeecC
Q 018591          278 ADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .|+.||.|.+.+... +..+.+++ ...+-..+.|.|.
T Consensus       284 GD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPK  320 (472)
T KOG0303|consen  284 GDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPK  320 (472)
T ss_pred             CCcceEEEEecCCCceeEEecccc-cCCcccccccccc
Confidence            899999999987543 22233332 2345566777765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.7e-22  Score=161.42  Aligned_cols=265  Identities=19%  Similarity=0.249  Sum_probs=189.4

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--------ceeeEEeccCceeeEEEEEe--CCEEEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--------LRMFTKFGHGDGSVKAVVTV--GNKVFT   71 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--------~~~~~~~~~~~~~v~~~~~~--~~~l~s   71 (353)
                      +++.+-.++..|.+.|+.++|.  ...|++++.||.+.+|+++.        .+++.+|.+|.++|.|++..  +..+++
T Consensus       282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys  361 (577)
T KOG0642|consen  282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS  361 (577)
T ss_pred             eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe
Confidence            3466667899999999999996  77999999999999999832        35788999999999999997  889999


Q ss_pred             ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc
Q 018591           72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT  149 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~  149 (353)
                      |+.||+|+.|++.... .....-                     ....-...+.||.+.|..+++++  +.|++++.||+
T Consensus       362 gg~Dg~I~~w~~p~n~-dp~ds~---------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT  419 (577)
T KOG0642|consen  362 GGIDGTIRCWNLPPNQ-DPDDSY---------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT  419 (577)
T ss_pred             eccCceeeeeccCCCC-Cccccc---------------------CcchhccceeccccceeeeeecccccceeeecCCce
Confidence            9999999999886322 111000                     00011234559999999999998  88999999999


Q ss_pred             EEEEEcCCceeeeeccc--cCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeecc------CCceee
Q 018591          150 LKVWRVADLKCLESIKA--HDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGH------KDVSLN  218 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~  218 (353)
                      +++|+.....+ .++..  ..+.-.++.+...   ..++...-+.-.+++.....     -...+...      ....+.
T Consensus       420 vr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s-----~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  420 VRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS-----DLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             EEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh-----heeeccccCCCcccccCccc
Confidence            99999876655 33322  1233456666332   33333333333333333332     11111111      112246


Q ss_pred             EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      .+..+|+..+.+++..|+.|+++|..++    .+......|...+++++.  +|.+|++|+.|+.+++|.+....   ++
T Consensus       494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~---~~  566 (577)
T KOG0642|consen  494 KVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT---CV  566 (577)
T ss_pred             eEEecCCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCCCceEEeecCCceeehhhccchh---ee
Confidence            7888999999999999999999999998    677777788888877766  48899999999999999987644   44


Q ss_pred             ccccCCC
Q 018591          297 GAITGHE  303 (353)
Q Consensus       297 ~~~~~h~  303 (353)
                      .....|.
T Consensus       567 ~es~~~r  573 (577)
T KOG0642|consen  567 LESTAHR  573 (577)
T ss_pred             ecccccc
Confidence            4444443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=1.5e-22  Score=151.48  Aligned_cols=245  Identities=16%  Similarity=0.180  Sum_probs=181.6

Q ss_pred             ccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEccc
Q 018591           15 HVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        15 h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~   85 (353)
                      |...-..++|.      ..++|.|+.-|.|+|.|+.++++...+.+|...|+.+.+.   .+++++++.|..|++|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            66777788873      4589999999999999999999999999999999999997   67999999999999999988


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-  162 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-  162 (353)
                      ..     ++..+.+                        +.+|...|.++.|+.  +++++++.|.++++|++...+... 
T Consensus       168 ~~-----Cv~VfGG------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~  218 (385)
T KOG1034|consen  168 DV-----CVAVFGG------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK  218 (385)
T ss_pred             Ce-----EEEEecc------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence            76     3333222                        128999999999999  999999999999999997321100 


Q ss_pred             ---------------------------eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc---------cccce
Q 018591          163 ---------------------------SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH---------CHSLK  206 (353)
Q Consensus       163 ---------------------------~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~  206 (353)
                                                 +-..|...|.|+.|-.+++++-+-++.|..|....-+..         .....
T Consensus       219 lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~  298 (385)
T KOG1034|consen  219 LELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL  298 (385)
T ss_pred             hhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeee
Confidence                                       112477778888887789999999999999987322111         11122


Q ss_pred             eeeeccCCce-eeEEEEcCCCCeEEeecCCCcEEEeeccccccce--eeeeeccccceeEEEEEEcCcEEEEecCCCeEE
Q 018591          207 GILEGHKDVS-LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW--KLACETKAHEMAVLCVCLVGEFLCSGSADKSIG  283 (353)
Q Consensus       207 ~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~  283 (353)
                      ..+.-....+ ....+|.|-++.|+.|...|.|.+||++...+..  ++.....+....-.+++-++.+|+....|++|.
T Consensus       299 ~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vw  378 (385)
T KOG1034|consen  299 GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVW  378 (385)
T ss_pred             eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEE
Confidence            2222222222 1234566778999999999999999999875432  122222222333355566799999999999999


Q ss_pred             EEecC
Q 018591          284 IWKRE  288 (353)
Q Consensus       284 iw~~~  288 (353)
                      -||..
T Consensus       379 rwdrv  383 (385)
T KOG1034|consen  379 RWDRV  383 (385)
T ss_pred             EEEee
Confidence            99853

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.89  E-value=7.7e-21  Score=165.04  Aligned_cols=299  Identities=16%  Similarity=0.215  Sum_probs=199.4

Q ss_pred             CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-------eeeEEeccCceeeEEEEE--eCCEEEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-------RMFTKFGHGDGSVKAVVT--VGNKVFT   71 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~--~~~~l~s   71 (353)
                      ++|..+++|..|...|..++.+   +.+++|||.||+|++||....       +...++......+.++..  .++.+|.
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            4688899999999999999995   589999999999999997532       222333333455665554  4899999


Q ss_pred             ecCCCcEEEEEcccCccceeEEeec-cccccceeeeecccceeEeecccceeeeeecCCceEEE-EEeC---C-eEEEec
Q 018591           72 AHQDSRIRVWKVSRSSENVFRLVDT-LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL-TVYN---G-LIYSGS  145 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~---~-~l~~~~  145 (353)
                      ++.||.|++.+++............ .+..                         ...+.+..+ ++..   . .++.+.
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-------------------------~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNL-------------------------KKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccc-------------------------cCCCceEEeecccccccceeEEEEE
Confidence            9999999999998742211111110 0000                         112223222 3332   3 788888


Q ss_pred             CCCcEEEEEcCCceeeeeccc--cCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591          146 WDKTLKVWRVADLKCLESIKA--HDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (353)
                      ..+.|..||++......+++.  ..+.|++++.++  +.++.|+..|.+.+||++-+.     +...+.......+..+.
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~-----~i~sw~~P~~~~i~~v~ 1245 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV-----PILSWEHPARAPIRHVW 1245 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc-----eeecccCcccCCcceEE
Confidence            999999999988776665543  367899999944  499999999999999999876     55555544445557777


Q ss_pred             EcCCC---CeEEe-ec-CCCcEEEeeccccccceeeeee---------cc------ccc-eeEEEEEEc-CcEEEEecCC
Q 018591          222 VSDDG---KWVYG-GG-SDGFVMGWEGNVEIVRWKLACE---------TK------AHE-MAVLCVCLV-GEFLCSGSAD  279 (353)
Q Consensus       222 ~~~~~---~~l~~-~~-~dg~i~i~d~~~~~~~~~~~~~---------~~------~~~-~~v~~~~~~-~~~l~~~~~d  279 (353)
                      .+|-.   ...++ ++ ..+.|.+|++.++.....+...         ..      .+. ..+.+.-.+ +.++.+|+.|
T Consensus      1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred             eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence            77632   34444 44 5789999999987543332222         00      011 111222222 6789999999


Q ss_pred             CeEEEEecCCCcce-----------------------------------------E----Eecc--------ccCCCcCe
Q 018591          280 KSIGIWKREAFGKL-----------------------------------------C----RVGA--------ITGHEGPV  306 (353)
Q Consensus       280 g~i~iw~~~~~~~~-----------------------------------------~----~~~~--------~~~h~~~v  306 (353)
                      ..|+.||....+..                                         .    ....        -..|..+|
T Consensus      1326 ~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~I 1405 (1431)
T KOG1240|consen 1326 MKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPI 1405 (1431)
T ss_pred             cceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchh
Confidence            99999997643211                                         0    0000        12367789


Q ss_pred             EEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          307 KCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      +++++....   ..+|++++.||.|+||.
T Consensus      1406 tdma~~~~~---q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1406 TDMATLKSE---QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhhhhhccC---ccEEEEecCCCeeeecC
Confidence            999888762   46999999999999994

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=1e-20  Score=158.21  Aligned_cols=268  Identities=14%  Similarity=0.121  Sum_probs=194.5

Q ss_pred             CCcEEEEeCCCc-eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           35 GKDIIVWQQPDL-RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        35 dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      ++.+.+|++... .+...+. ....|.++.|+   +++++.|..+|.|.+||+..+.......+....            
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~------------  287 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE------------  287 (555)
T ss_pred             CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc------------
Confidence            357999999876 3333443 36789999887   889999999999999999987743322222221            


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCcee-eee-----cc------ccCcceEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKC-LES-----IK------AHDDAVNGL  174 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~-~~~-----~~------~~~~~v~~i  174 (353)
                                    ..|..+++.+.|..    .-+++++.||.|..|+++.... ...     ..      .....++++
T Consensus       288 --------------~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~  353 (555)
T KOG1587|consen  288 --------------VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSL  353 (555)
T ss_pred             --------------ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeE
Confidence                          16999999999976    4599999999999998865322 111     11      123467888


Q ss_pred             EE---eCCeEEEEcCCCcEEEEeCCCCCcc---cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc-ccc
Q 018591          175 VA---SKGIVYSASADGKIKAWGKELGKSH---CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN-VEI  247 (353)
Q Consensus       175 ~~---~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~  247 (353)
                      .|   .++.++.|+.+|.|.--+....+..   .......+..|.+.+ .++.++|-+..++..+.|.+++||... .. 
T Consensus       354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v-~~v~~nPF~~k~fls~gDW~vriWs~~~~~-  431 (555)
T KOG1587|consen  354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV-YAVSRNPFYPKNFLSVGDWTVRIWSEDVIA-  431 (555)
T ss_pred             eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce-EeeecCCCccceeeeeccceeEeccccCCC-
Confidence            88   5569999999999987444333211   112233445555555 999999977666555559999999987 33 


Q ss_pred             cceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591          248 VRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s  324 (353)
                         .+...+..+...+++++|+   ...++++..||.+.+||+.... ..++.+...+....+.+.|++.    |+.|+.
T Consensus       432 ---~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~----g~~lav  503 (555)
T KOG1587|consen  432 ---SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPN----GKLLAV  503 (555)
T ss_pred             ---CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCC----CcEEEE
Confidence               4555666677779999997   5689999999999999997643 2244444445667788999998    999999


Q ss_pred             ccCCCeEEEEEcCCC
Q 018591          325 GSLDKSLRVWWVSKQ  339 (353)
Q Consensus       325 ~~~dg~i~iw~~~~~  339 (353)
                      |...|++++|++...
T Consensus       504 Gd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  504 GDANGTTHILKLSES  518 (555)
T ss_pred             ecCCCcEEEEEcCch
Confidence            999999999999754

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=9.5e-22  Score=157.23  Aligned_cols=260  Identities=18%  Similarity=0.244  Sum_probs=178.8

Q ss_pred             EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591           51 KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA  128 (353)
Q Consensus        51 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (353)
                      ++..|...|.++.|.  ...|++++.||++++|++........                        ....+.-.|.+|.
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~------------------------~~~epi~tfraH~  344 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAE------------------------KDVEPILTFRAHE  344 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccc------------------------cceeeeEEEeccc
Confidence            456677888888887  77899999999999999933110000                        0112344566999


Q ss_pred             CceEEEEEeC--CeEEEecCCCcEEEEEcCCc----------eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEe
Q 018591          129 DSISCLTVYN--GLIYSGSWDKTLKVWRVADL----------KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWG  194 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd  194 (353)
                      ++|.|+++.+  ..+++|+.||+|+.|++...          .....+.+|...|+.+++  .++.|++++.||+++.|+
T Consensus       345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~  424 (577)
T KOG0642|consen  345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE  424 (577)
T ss_pred             CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence            9999999988  89999999999999965411          234567899999999999  445899999999999999


Q ss_pred             CCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeec-ccc--ceeEEE--EEE
Q 018591          195 KELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACET-KAH--EMAVLC--VCL  268 (353)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~--~~~v~~--~~~  268 (353)
                      .....+    +........+.+ .++.+-... ...++...-+.-.+++.........+.... .+.  ...+..  -.+
T Consensus       425 ~~~~~~----~~f~~~~e~g~P-lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~  499 (577)
T KOG0642|consen  425 PTEESP----CTFGEPKEHGYP-LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP  499 (577)
T ss_pred             cCCcCc----cccCCccccCCc-ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence            887762    111111122333 556654433 223333333333344443332111110000 000  011122  233


Q ss_pred             cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          269 VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .+.+.+++..|+.|+++|..+++   .+.....|...++++++.|+    |-+|++++.||.+++|++....+.....
T Consensus       500 ~~~~~~~~hed~~Ir~~dn~~~~---~l~s~~a~~~svtslai~~n----g~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  500 TADITFTAHEDRSIRFFDNKTGK---ILHSMVAHKDSVTSLAIDPN----GPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             CCCeeEecccCCceecccccccc---cchheeeccceecceeecCC----CceEEeecCCceeehhhccchheeeccc
Confidence            47789999999999999999988   78888899999999999999    9999999999999999998887776554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=140.52  Aligned_cols=245  Identities=16%  Similarity=0.179  Sum_probs=173.4

Q ss_pred             eEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591           59 VKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV  136 (353)
Q Consensus        59 v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  136 (353)
                      ..++.|+  |.+|++|+.||.|.+||+.+..                                ..+++.+|..+|++++|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--------------------------------iar~lsaH~~pi~sl~W   73 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--------------------------------IARMLSAHVRPITSLCW   73 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc--------------------------------hhhhhhccccceeEEEe
Confidence            6788888  9999999999999999998865                                12334489999999999


Q ss_pred             eC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeec
Q 018591          137 YN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEG  211 (353)
Q Consensus       137 ~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  211 (353)
                      ++  ..|++++.|..|.+||+..+.++++++. ..+|+...|.|   +.+++.-.+..-.+-++..+...  .+...-.+
T Consensus        74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d~d~  150 (405)
T KOG1273|consen   74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKDDDG  150 (405)
T ss_pred             cCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCCCcc
Confidence            99  8999999999999999999999999864 78999999933   35555544555555555543210  01111111


Q ss_pred             cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEE--EEcCcEEEEecCCCeEEEEecC
Q 018591          212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCV--CLVGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~~dg~i~iw~~~  288 (353)
                      ..+....+..|.+.|+++++|...|.+.++|..+.    ++...++... ..|..+  +..|++|+.-+.|+.||.|+++
T Consensus       151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             ccccccccccccCCCCEEEEecCcceEEEEecchh----eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            11222234568899999999999999999999987    4444444333 344444  4469999999999999999987


Q ss_pred             CCc------ceEEeccccC--CCcCeEEEEeecCCCCCCeEEEEccCC-CeEEEEEcCCCCCccccc
Q 018591          289 AFG------KLCRVGAITG--HEGPVKCLQASPNAVGGGFLLYSGSLD-KSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       289 ~~~------~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~  346 (353)
                      .-.      .+.+.++++.  ....=.+++|+.+    |.|++.++.- ..++||.-..|..+..+.
T Consensus       227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d----geYv~a~s~~aHaLYIWE~~~GsLVKILh  289 (405)
T KOG1273|consen  227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD----GEYVCAGSARAHALYIWEKSIGSLVKILH  289 (405)
T ss_pred             hhcccCccCCcChhHHHHHHHhhhhhhheeecCC----ccEEEeccccceeEEEEecCCcceeeeec
Confidence            311      1111222211  1223467889988    8888887753 579999999888776544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.88  E-value=4.5e-20  Score=136.11  Aligned_cols=290  Identities=14%  Similarity=0.149  Sum_probs=200.5

Q ss_pred             CceeeeeeCccCceEEEEEC-----CcEEEEEeC----CCcEEEEeC--CCceeeEEe-ccCceeeEEEEEe-------C
Q 018591            6 HRSLAVLSGHVGSVSSLALC-----GEFILSASQ----GKDIIVWQQ--PDLRMFTKF-GHGDGSVKAVVTV-------G   66 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~----dg~v~vwd~--~~~~~~~~~-~~~~~~v~~~~~~-------~   66 (353)
                      .+.+..+..| -+++++.|+     ..+||.|+.    .+.|.|-.+  ++++.+..- -.|.-+++.+.|.       .
T Consensus        35 ~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   35 RKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             cceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence            3445555544 368889986     558888875    456666554  345544322 3567788888886       2


Q ss_pred             CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEE
Q 018591           67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYS  143 (353)
Q Consensus        67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~  143 (353)
                      +.|++.+.  .+|+|.+...+ ....+...+...                      .-..+..+++++.|+.   +++.+
T Consensus       114 dlLATs~D--~LRlWri~~ee-~~~~~~~~L~~~----------------------kns~~~aPlTSFDWne~dp~~igt  168 (364)
T KOG0290|consen  114 DLLATSSD--FLRLWRIGDEE-SRVELQSVLNNN----------------------KNSEFCAPLTSFDWNEVDPNLIGT  168 (364)
T ss_pred             chhhcccC--eEEEEeccCcC-CceehhhhhccC----------------------cccccCCcccccccccCCcceeEe
Confidence            34555543  79999997532 111111111110                      0115778999999987   89999


Q ss_pred             ecCCCcEEEEEcCCce---eeeeccccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-Cce
Q 018591          144 GSWDKTLKVWRVADLK---CLESIKAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-DVS  216 (353)
Q Consensus       144 ~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~  216 (353)
                      ++-|-+..+||++++.   ...++-+|..+|..++|.   -+.+++.+.||.+|+||++..+-    ..-.++... ..+
T Consensus       169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----STIIYE~p~~~~p  244 (364)
T KOG0290|consen  169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----STIIYEDPSPSTP  244 (364)
T ss_pred             ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc----ceEEecCCCCCCc
Confidence            9999999999999863   355667899999999993   34999999999999999998761    222333333 444


Q ss_pred             eeEEEEcCC-CCeEEeecC-CCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCc
Q 018591          217 LNSVVVSDD-GKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       217 v~~~~~~~~-~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      ...++|+++ -+++++-.. ...|.+.|++...   .....+.+|...|..++|.   ...|++++.|..+.+||+...-
T Consensus       245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             ceeeccCcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            578888875 456666444 4579999998763   6778899999999999884   7799999999999999997643


Q ss_pred             c---eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591          292 K---LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV  333 (353)
Q Consensus       292 ~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i  333 (353)
                      .   ..++..+. ..+.|+.+.|+|..   ...++.+... ++.+
T Consensus       322 ~~~~~dPilay~-a~~EVNqi~Ws~~~---~Dwiai~~~k-klei  361 (364)
T KOG0290|consen  322 RENGEDPILAYT-AGGEVNQIQWSSSQ---PDWIAICFGK-KLEI  361 (364)
T ss_pred             ccCCCCchhhhh-ccceeeeeeecccC---CCEEEEEecC-eeeE
Confidence            2   11222222 46689999999763   5677776543 4433

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=9.8e-21  Score=139.45  Aligned_cols=276  Identities=21%  Similarity=0.263  Sum_probs=191.4

Q ss_pred             eeeeCccCceEEEEEC---CcEEEEEeCC-------CcEEEEeCCCc---------eeeEEec-cCceeeEEEEEe--CC
Q 018591           10 AVLSGHVGSVSSLALC---GEFILSASQG-------KDIIVWQQPDL---------RMFTKFG-HGDGSVKAVVTV--GN   67 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~---~~~l~s~~~d-------g~v~vwd~~~~---------~~~~~~~-~~~~~v~~~~~~--~~   67 (353)
                      .+|..|.+.|+.++-+   .+.|+|+-.+       -.+-||.++..         +++..+. .+-+.|.|+.|.  +.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~  136 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD  136 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence            4567788999999875   5677776543       24789987642         3344443 345689999997  56


Q ss_pred             EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEe
Q 018591           68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSG  144 (353)
Q Consensus        68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~  144 (353)
                      .+++-. |..|.+|+++...............                          ++....++-+|+|   ..-+..
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~--------------------------e~~~~ftsg~WspHHdgnqv~t  189 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESA--------------------------EMRHSFTSGAWSPHHDGNQVAT  189 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccc--------------------------cccceecccccCCCCccceEEE
Confidence            677665 7799999998876322222221111                          4666778888988   334444


Q ss_pred             cCCCcEEEEEcCCceeeeec-cccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591          145 SWDKTLKVWRVADLKCLESI-KAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       145 ~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      ..|+++..||+++.++...+ .+|...|..+.|+++   .|++++.||.|++||.+..+    .+...+.+|...+ .++
T Consensus       190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk----~pv~el~~HsHWv-W~V  264 (370)
T KOG1007|consen  190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK----FPVQELPGHSHWV-WAV  264 (370)
T ss_pred             eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----ccccccCCCceEE-EEE
Confidence            56799999999998877666 468889999999776   89999999999999999876    4788899999887 999


Q ss_pred             EEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc
Q 018591          221 VVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI  299 (353)
Q Consensus       221 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  299 (353)
                      .|+|. .+++++|+.|..|.+|....-................              ..|..=+.=-+.++    .+.++
T Consensus       265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e--------------~~dseer~kpL~dg----~l~ty  326 (370)
T KOG1007|consen  265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE--------------DEDSEERVKPLQDG----QLETY  326 (370)
T ss_pred             EecCccceEEEecCCCceeEEEeccccccccccccccccccCc--------------chhhHHhccccccc----ccccc
Confidence            99995 5678899999999999765532111111110000000              00000000011221    45667


Q ss_pred             cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       300 ~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      ..|+..|++++|+..+   --++|+-+.||.+.|=++..
T Consensus       327 dehEDSVY~~aWSsad---PWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSAD---PWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccceEEEeeccCC---CeeEEEeccCceEEeecCCh
Confidence            7899999999999873   56889999999998877654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.3e-20  Score=151.91  Aligned_cols=237  Identities=14%  Similarity=0.133  Sum_probs=172.9

Q ss_pred             eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      +-..+.+|++.|.+|..+  |.+|++|+.||+|++|.+.++.     ++...                            
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-----cvr~~----------------------------  438 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-----CVRTV----------------------------  438 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-----EEEEE----------------------------
Confidence            334568999999999887  9999999999999999999987     44443                            


Q ss_pred             ecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce-------------------------------------eeeec
Q 018591          126 EHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK-------------------------------------CLESI  164 (353)
Q Consensus       126 ~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~-------------------------------------~~~~~  164 (353)
                      ...+.|.|++|+|    ..|+++.. ..+.+.+..-|.                                     -+...
T Consensus       439 ~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~  517 (733)
T KOG0650|consen  439 QFDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIV  517 (733)
T ss_pred             eecceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEE
Confidence            2445788888887    23333333 334444432110                                     01112


Q ss_pred             cccCcceEEEEE--eCCeEEEEcCC---CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          165 KAHDDAVNGLVA--SKGIVYSASAD---GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       165 ~~~~~~v~~i~~--~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      -.|...|..+.|  .+++|++...+   ..|.|.++....     .+..+....+. +.++.|+|...+|++++.. .|+
T Consensus       518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-----sQ~PF~kskG~-vq~v~FHPs~p~lfVaTq~-~vR  590 (733)
T KOG0650|consen  518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-----SQSPFRKSKGL-VQRVKFHPSKPYLFVATQR-SVR  590 (733)
T ss_pred             EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-----ccCchhhcCCc-eeEEEecCCCceEEEEecc-ceE
Confidence            246778899999  45588877654   468889887665     33333333444 4999999999988888754 599


Q ss_pred             EeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (353)
                      +||+...    .+...+......+..+  .+.|..|+.|+.|+.+..||+.-..+  +.+.+.-|...+++++|++.   
T Consensus       591 iYdL~kq----elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk--Pyk~lr~H~~avr~Va~H~r---  661 (733)
T KOG0650|consen  591 IYDLSKQ----ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK--PYKTLRLHEKAVRSVAFHKR---  661 (733)
T ss_pred             EEehhHH----HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc--hhHHhhhhhhhhhhhhhccc---
Confidence            9999886    4444444445555444  45689999999999999999986654  56778889999999999999   


Q ss_pred             CCeEEEEccCCCeEEEEE
Q 018591          318 GGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       318 ~~~~l~s~~~dg~i~iw~  335 (353)
                       -.++++|+.||++.|+-
T Consensus       662 -yPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  662 -YPLFASGSDDGTVIVFH  678 (733)
T ss_pred             -cceeeeecCCCcEEEEe
Confidence             78999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=1.1e-20  Score=144.96  Aligned_cols=201  Identities=20%  Similarity=0.303  Sum_probs=157.2

Q ss_pred             eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-------eeeEEeccCceeeEEEEEe---CCEEEEecCCC
Q 018591           10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-------RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDS   76 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg   76 (353)
                      -.+.||+++|..++|+   .+.+||||.|.+|.||++..+       +.+..+.+|...|.-+.|.   .+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            3567999999999995   789999999999999998754       4577889999999999998   78899999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      +|.+|++.+++.     +-++                            .|...|.++.|+.  .++++.+.|..|++||
T Consensus       155 ~v~iWnv~tgea-----li~l----------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~d  201 (472)
T KOG0303|consen  155 TVSIWNVGTGEA-----LITL----------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVID  201 (472)
T ss_pred             eEEEEeccCCce-----eeec----------------------------CCCCeEEEEEeccCCceeeeecccceeEEEc
Confidence            999999999872     1111                            5999999999998  8999999999999999


Q ss_pred             cCCceeeeeccccCcc--eEEEEEeCCeEEEEc----CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          155 VADLKCLESIKAHDDA--VNGLVASKGIVYSAS----ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~--v~~i~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      .++++.+..-.+|.+.  ...+-..++.+++.+    .+..+-+||..+.+.    +.....-..+.-|.---|.++.+.
T Consensus       202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e----P~~~~elDtSnGvl~PFyD~dt~i  277 (472)
T KOG0303|consen  202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE----PIALQELDTSNGVLLPFYDPDTSI  277 (472)
T ss_pred             CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccC----cceeEEeccCCceEEeeecCCCCE
Confidence            9999999888788653  333433444455554    367899999887652    333333333333355567788777


Q ss_pred             EEe-ecCCCcEEEeeccccc
Q 018591          229 VYG-GGSDGFVMGWEGNVEI  247 (353)
Q Consensus       229 l~~-~~~dg~i~i~d~~~~~  247 (353)
                      ++. |-.|+.|+.|.+....
T Consensus       278 vYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  278 VYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EEEEecCCcceEEEEecCCC
Confidence            654 5579999999998764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=8.7e-20  Score=136.59  Aligned_cols=262  Identities=16%  Similarity=0.256  Sum_probs=188.1

Q ss_pred             EEEEC--CcEEEEEeCCCcEEEEeCCCce------------eeEEec-cCceeeEEEEEe---------CCEEEEecCCC
Q 018591           21 SLALC--GEFILSASQGKDIIVWQQPDLR------------MFTKFG-HGDGSVKAVVTV---------GNKVFTAHQDS   76 (353)
Q Consensus        21 ~~~~~--~~~l~s~~~dg~v~vwd~~~~~------------~~~~~~-~~~~~v~~~~~~---------~~~l~s~~~dg   76 (353)
                      ...|+  |.-|++-+.|..+++|++..-.            ...++. .....|...+|-         .+++++.+.+.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            34564  8899999999999999975311            011111 123456666663         46788999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC---ceEEEEEeC--CeEEEecCCCcEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD---SISCLTVYN--GLIYSGSWDKTLK  151 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~--~~l~~~~~dg~v~  151 (353)
                      -|++||.-+++..     .....                         ..|..   ...++.|+|  ..|++| ....|+
T Consensus       134 PIh~wdaftG~lr-----aSy~~-------------------------ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir  182 (406)
T KOG2919|consen  134 PIHLWDAFTGKLR-----ASYRA-------------------------YDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR  182 (406)
T ss_pred             ceeeeeccccccc-----cchhh-------------------------hhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence            9999999888621     11100                         02333   345799999  555555 568999


Q ss_pred             EEEc-CCceeee--e-c----cccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591          152 VWRV-ADLKCLE--S-I----KAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       152 iwd~-~~~~~~~--~-~----~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      ++|+ +.+..-.  . +    .+..+-+.+++++|   ..++.++...++-||.-....     +...+.+|.+.+ +.+
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-----pl~llggh~gGv-ThL  256 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-----PLQLLGGHGGGV-THL  256 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC-----ceeeecccCCCe-eeE
Confidence            9999 4443211  1 1    23366788888844   389999999999999887777     788888999887 999


Q ss_pred             EEcCCCCeEEeecC-CCcEEEeeccccccceeeeeeccccce-----eEEEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591          221 VVSDDGKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHEM-----AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       221 ~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                      .|.++|+.|++|.. |..|..||++...   .+...+..|..     ....+.+.+++|++|+.||.|++||++....  
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--  331 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--  331 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--
Confidence            99999999999875 6789999998753   33334444433     2344555699999999999999999998443  


Q ss_pred             EeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                      .+..+..|...++.++++|.    -.++++++..
T Consensus       332 ~~sv~~~~sd~vNgvslnP~----mpilatssGq  361 (406)
T KOG2919|consen  332 EVSVTGNYSDTVNGVSLNPI----MPILATSSGQ  361 (406)
T ss_pred             cccccccccccccceecCcc----cceeeeccCc
Confidence            46667789999999999998    7788888765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=6.1e-18  Score=144.42  Aligned_cols=283  Identities=33%  Similarity=0.538  Sum_probs=211.8

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-eeEEeccCce-eeEEEEE-e--CC-EEEEecC-CCcEEEE
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-MFTKFGHGDG-SVKAVVT-V--GN-KVFTAHQ-DSRIRVW   81 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-~~~~~~~~~~-~v~~~~~-~--~~-~l~s~~~-dg~i~~w   81 (353)
                      .+..|...+.++.++  +..++.++.|+.+.+|+...+. ....+..+.. .+..+.. .  +. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            467899999999996  7888889999999999998876 6666665332 5666655 3  44 4454444 9999999


Q ss_pred             Eccc-CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC-CCcEEEEEcCC
Q 018591           82 KVSR-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW-DKTLKVWRVAD  157 (353)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~-dg~v~iwd~~~  157 (353)
                      +... ..                                ....+..|...|..+.|++  ..+++++. |+.+++|+...
T Consensus       140 ~~~~~~~--------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         140 DLSTPGK--------------------------------LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             EecCCCe--------------------------------EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence            9986 22                                1223347999999999999  56777775 99999999998


Q ss_pred             ceeeeeccccCcceEEEEEe-CC--eEEEEcCCCcEEEEeCCCCCccccccee-eeeccCCceeeEEEEcCCCCeEEeec
Q 018591          158 LKCLESIKAHDDAVNGLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKG-ILEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                      +..+..+..|...+.++++. .+  .+++++.|+.+++||...+.     ... .+..|.... .. .|+|++..+++++
T Consensus       188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  260 (466)
T COG2319         188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-----LLRSTLSGHSDSV-VS-SFSPDGSLLASGS  260 (466)
T ss_pred             CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc-----EEeeecCCCCcce-eE-eECCCCCEEEEec
Confidence            88888888899999999994 33  44444899999999888554     444 566666542 22 8999998999999


Q ss_pred             CCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591          234 SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~  311 (353)
                      .|+.+++|+......   .......|...+.++.++  +..+++++.|+.+.+|+........... ...|...+..+.|
T Consensus       261 ~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  336 (466)
T COG2319         261 SDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSF  336 (466)
T ss_pred             CCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEE
Confidence            999999999987643   111225566777776665  5778888889999999988766433332 3478778999999


Q ss_pred             ecCCCCCCeEEEEc-cCCCeEEEEEcCCCC
Q 018591          312 SPNAVGGGFLLYSG-SLDKSLRVWWVSKQS  340 (353)
Q Consensus       312 ~~~~~~~~~~l~s~-~~dg~i~iw~~~~~~  340 (353)
                       +..   +..++.+ ..|+.+.+|++....
T Consensus       337 -~~~---~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         337 -SPD---GSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             -CCC---CCEEEEeecCCCcEEeeecCCCc
Confidence             531   2455555 788999999998876

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=2e-19  Score=132.74  Aligned_cols=254  Identities=13%  Similarity=0.188  Sum_probs=182.6

Q ss_pred             ceeeEEeccCceeeEEEEEe-----CCEEEEecC----CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQ----DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT  116 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (353)
                      ++.+..+.. .-.+.++.|+     ..+|+.|+.    .+.|.+-.++.....   .+....                  
T Consensus        35 ~~eiy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e---~~~~a~------------------   92 (364)
T KOG0290|consen   35 RKEIYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE---LVEDAN------------------   92 (364)
T ss_pred             cceEEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc---eeccCC------------------
Confidence            344555554 3567888887     456777763    356666655532211   111000                  


Q ss_pred             cccceeeeeecCCceEEEEEeC-------CeEEEecCCCcEEEEEcCCcee----eeec-----cccCcceEEEEE---e
Q 018591          117 RRHHKRLWIEHADSISCLTVYN-------GLIYSGSWDKTLKVWRVADLKC----LESI-----KAHDDAVNGLVA---S  177 (353)
Q Consensus       117 ~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~~~dg~v~iwd~~~~~~----~~~~-----~~~~~~v~~i~~---~  177 (353)
                              ..|.-+++.+.|.|       ++|++.+  ..+++|.+...+.    ...+     ..+..++++..|   .
T Consensus        93 --------fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d  162 (364)
T KOG0290|consen   93 --------FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD  162 (364)
T ss_pred             --------CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC
Confidence                    16888999999988       3455544  5799999863221    1111     235679999999   6


Q ss_pred             CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeec
Q 018591          178 KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       178 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                      ++++.+++-|-+..+||++.+.  .......+-.|...+ ..++|...+ +.+++.+.||.+++||++.... ...+.+-
T Consensus       163 p~~igtSSiDTTCTiWdie~~~--~~~vkTQLIAHDKEV-~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~  238 (364)
T KOG0290|consen  163 PNLIGTSSIDTTCTIWDIETGV--SGTVKTQLIAHDKEV-YDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYED  238 (364)
T ss_pred             cceeEeecccCeEEEEEEeecc--ccceeeEEEecCcce-eEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecC
Confidence            7799999999999999999873  122456777888776 999999864 5789999999999999998632 2444444


Q ss_pred             cccceeEEEEEEc---CcEEEEecC-CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591          257 KAHEMAVLCVCLV---GEFLCSGSA-DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       257 ~~~~~~v~~~~~~---~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~  332 (353)
                      .....+...++|+   .+++|+-.. ...|.|.|++....  .+..+++|.+.|+.++|.|..   ...++|+++|..+.
T Consensus       239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS---~~hictaGDD~qal  313 (364)
T KOG0290|consen  239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHS---SSHICTAGDDCQAL  313 (364)
T ss_pred             CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCC---CceeeecCCcceEE
Confidence            4446677888886   678887655 45799999997655  678899999999999999983   67999999999999


Q ss_pred             EEEcCCCC
Q 018591          333 VWWVSKQS  340 (353)
Q Consensus       333 iw~~~~~~  340 (353)
                      +||+...-
T Consensus       314 iWDl~q~~  321 (364)
T KOG0290|consen  314 IWDLQQMP  321 (364)
T ss_pred             EEeccccc
Confidence            99998643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.4e-18  Score=125.20  Aligned_cols=233  Identities=18%  Similarity=0.234  Sum_probs=166.7

Q ss_pred             CceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCcee------eEE--eccC-----ceeeEEEEEe--CCEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRM------FTK--FGHG-----DGSVKAVVTV--GNKVF   70 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~------~~~--~~~~-----~~~v~~~~~~--~~~l~   70 (353)
                      ..++-..++|.++|+.++|..++|++|+. |.|+-|.......      +..  .+.|     -..|+++..+  .+.++
T Consensus        52 k~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   52 KLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             CcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            34455668999999999999999999876 9999998654322      111  1112     2467787776  56677


Q ss_pred             EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591           71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK  148 (353)
Q Consensus        71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg  148 (353)
                      .++.|+.++-||++++.                                -.+.+.+|++.|.++.--.  ..+++|++||
T Consensus       131 ~AgGD~~~y~~dlE~G~--------------------------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG  178 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGR--------------------------------IQREYRGHTDYVHSVVGRNANGQILSGAEDG  178 (325)
T ss_pred             EecCCeEEEEEEecCCE--------------------------------EEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence            77789999999999987                                2455669999999999854  8999999999


Q ss_pred             cEEEEEcCCceeeeeccc---------c-CcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591          149 TLKVWRVADLKCLESIKA---------H-DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       149 ~v~iwd~~~~~~~~~~~~---------~-~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                      ++++||.++++++..+..         | ...|.+++.+.+.++.|+. ..+.+|.++..+     +...+.....  +.
T Consensus       179 tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse-----~t~vfpipa~--v~  250 (325)
T KOG0649|consen  179 TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSE-----STCVFPIPAR--VH  250 (325)
T ss_pred             cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCC-----ceEEEecccc--ee
Confidence            999999999998887642         2 3457788888888887764 679999999887     5555544332  36


Q ss_pred             EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEe
Q 018591          219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWK  286 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~  286 (353)
                      .+.|..+  .+++++..+.|.-|.+...     +....+.......+.+++   -++|-.++..+.+.|+.
T Consensus       251 ~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  251 LVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             Eeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence            6777644  6788888888999987653     222333333344444444   34566667777777764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.1e-19  Score=140.59  Aligned_cols=245  Identities=15%  Similarity=0.212  Sum_probs=184.8

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      .+.|+++.|.  ...+++++.||++++|.++.........+.                              -...+|.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~------------------------------l~~fPi~~  262 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH------------------------------LEKFPIQK  262 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee------------------------------eccCccce
Confidence            5689999998  678999999999999999876533222221                              24457888


Q ss_pred             EEEeC---CeEEEecCCCcEEEEEcCCceee--eeccccC-cceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591          134 LTVYN---GLIYSGSWDKTLKVWRVADLKCL--ESIKAHD-DAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSL  205 (353)
Q Consensus       134 ~~~~~---~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~-~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  205 (353)
                      ..|.|   ..+++++....++.||+.+.+..  ..+.++. ..+.....  .+++++..+..|.|.+.-..+++     .
T Consensus       263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-----l  337 (514)
T KOG2055|consen  263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-----L  337 (514)
T ss_pred             eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-----h
Confidence            99988   48999999999999999886643  3333433 23344444  44599999999999999988887     5


Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEE
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIW  285 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw  285 (353)
                      +..++..  ..+..++|+.+++.|++.+.+|.|.+||++........... .+-.+...|.+.++.+||+|+..|.|.||
T Consensus       338 i~s~Kie--G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIY  414 (514)
T KOG2055|consen  338 ITSFKIE--GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIY  414 (514)
T ss_pred             hheeeec--cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEe
Confidence            5555543  33699999999999999999999999999988433222221 22345567777889999999999999999


Q ss_pred             ecCC---CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC--CCeEEEEEcCCCCCc
Q 018591          286 KREA---FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL--DKSLRVWWVSKQSST  342 (353)
Q Consensus       286 ~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~  342 (353)
                      |.++   ...+.++..+..-...|+++.|+|+    .++||.+|.  +..+|+-.+.+....
T Consensus       415 d~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d----~qiLAiaS~~~knalrLVHvPS~TVF  472 (514)
T KOG2055|consen  415 DGNSCFASTNPKPIKTVDNLTTAITSLQFNHD----AQILAIASRVKKNALRLVHVPSCTVF  472 (514)
T ss_pred             ccchhhccCCCCchhhhhhhheeeeeeeeCcc----hhhhhhhhhccccceEEEeccceeee
Confidence            9654   2345577777777889999999999    999988875  567888777665443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.84  E-value=5.5e-17  Score=123.85  Aligned_cols=231  Identities=11%  Similarity=0.153  Sum_probs=169.4

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCc--EEEEEcccCcccee
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSR--IRVWKVSRSSENVF   91 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~--i~~w~~~~~~~~~~   91 (353)
                      ...+..+.|+  ...|..|+.|| -++++.+..............|..+-|+..+++..+.+..  +++.+.....    
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~----   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT----   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc----
Confidence            3467777786  55777788776 6888877665544444445677788888888887766543  7888876554    


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccc---cC
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA---HD  168 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~  168 (353)
                       .+-.+                            -...+|.++.++.++|+++=.+. |+|||+++.+.+.++..   +.
T Consensus        80 -~ICe~----------------------------~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~  129 (391)
T KOG2110|consen   80 -TICEI----------------------------FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP  129 (391)
T ss_pred             -eEEEE----------------------------ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCc
Confidence             11110                            35568999999997777777654 99999999999888753   45


Q ss_pred             cceEEEEEeCC--eEEE--EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc-EEEeec
Q 018591          169 DAVNGLVASKG--IVYS--ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF-VMGWEG  243 (353)
Q Consensus       169 ~~v~~i~~~~~--~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~  243 (353)
                      ..+.++.++..  +++.  ....|.|.+||..+-+     ....+..|.+.. .+++|+++|.+||+++..|+ ||+|.+
T Consensus       130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-----~v~~I~aH~~~l-Aalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-----PVNTINAHKGPL-AALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             cceEeeccCCCCceEEecCCCCCceEEEEEcccce-----eeeEEEecCCce-eEEEECCCCCEEEEeccCceEEEEEEc
Confidence            55667776333  5553  2346899999999887     778888999887 99999999999999999995 789999


Q ss_pred             cccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCC
Q 018591          244 NVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      ..++...++..-..  ...+.+++  +++++|++.+..++|++|.++.
T Consensus       204 ~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  204 PEGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCccEeeeeeCCce--eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            99854444443333  23444444  4689999999999999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=7.7e-21  Score=158.97  Aligned_cols=251  Identities=19%  Similarity=0.284  Sum_probs=193.4

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      +.++.+.+|...|+|..|+  |.++++|+.|..++||..++..     ++...+                          
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----~lAs~r--------------------------  229 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----CLASCR--------------------------  229 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----hhccCC--------------------------
Confidence            3445567899999999998  8999999999999999988776     444444                          


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                       ||.+.|+.++.+.  -++++++.|..|++|.+..+.++..+.+|++.|++|+|+|..  +.+.||++++||.+-.. ..
T Consensus       230 -Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~-~~  305 (1113)
T KOG0644|consen  230 -GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEP-RI  305 (1113)
T ss_pred             -CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccc-cc
Confidence             8999999999987  688899999999999999999999999999999999997754  78899999999998221 00


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeE
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSI  282 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i  282 (353)
                       ...+.........+.++.|..++..+++++.|+.-..|...........       ...++..+-...+.+++-.+-.+
T Consensus       306 -y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~-------lif~t~ssd~~~~~~~ar~~~~~  377 (1113)
T KOG0644|consen  306 -YVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL-------LIFVTRSSDLSSIVVTARNDHRL  377 (1113)
T ss_pred             -cCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc-------eEEEeccccccccceeeeeeeEe
Confidence             0111122223334577888888999999999999888876543111000       00111111113566777788889


Q ss_pred             EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .+|++.++.   .++.+.+|...+..+.++|-+   .....+++.||+..|||+..+..++...
T Consensus       378 ~vwnl~~g~---l~H~l~ghsd~~yvLd~Hpfn---~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  378 CVWNLYTGQ---LLHNLMGHSDEVYVLDVHPFN---PRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             eeeecccch---hhhhhcccccceeeeeecCCC---cHhhhhccCCCceEeeecccCCcceeee
Confidence            999999987   677888999999999999973   5678899999999999999887776443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=2.7e-18  Score=128.74  Aligned_cols=254  Identities=19%  Similarity=0.211  Sum_probs=174.4

Q ss_pred             eeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591           58 SVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT  135 (353)
Q Consensus        58 ~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  135 (353)
                      ......|+  |..|++-+.|..+++|++....-..-. -.....                  .....+-......|...+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~------------------~~~~~~r~~eg~tvydy~  111 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNF------------------SKHLSYRYQEGETVYDYC  111 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCcccc------------------ccceeEEeccCCEEEEEE
Confidence            34456676  889999999999999998643200000 000000                  000001112334555666


Q ss_pred             EeC---------CeEEEecCCCcEEEEEcCCceeeeeccc--cCc---ceEEEEE-eCCeEEEEcCCCcEEEEeC-CCCC
Q 018591          136 VYN---------GLIYSGSWDKTLKVWRVADLKCLESIKA--HDD---AVNGLVA-SKGIVYSASADGKIKAWGK-ELGK  199 (353)
Q Consensus       136 ~~~---------~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~i~~-~~~~l~~~~~dg~i~iwd~-~~~~  199 (353)
                      |.+         .++++.+.+.-|++||.-+++....+.+  |..   .-.+++| +++.-+.++....|++||+ +.++
T Consensus       112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr  191 (406)
T KOG2919|consen  112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR  191 (406)
T ss_pred             eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence            542         7899999999999999999988877754  333   3457888 5555566677899999999 5544


Q ss_pred             cccccceeee--eccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEE
Q 018591          200 SHCHSLKGIL--EGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLC  274 (353)
Q Consensus       200 ~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  274 (353)
                      . ........  +.....++.+++|+|- .+.++.|+....+-||.-...    .+...+.+|.+.|+.+.+  +|+.|+
T Consensus       192 ~-c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lf  266 (406)
T KOG2919|consen  192 D-CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLF  266 (406)
T ss_pred             C-CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeec
Confidence            1 11111111  2233456699999995 458999999988888887766    566667799999988877  588999


Q ss_pred             EecC-CCeEEEEecCCCcceEEeccccCCCc-CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          275 SGSA-DKSIGIWKREAFGKLCRVGAITGHEG-PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       275 ~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +|.. |-.|..||++..+.  .+..+..|.+ .=..|.|.-+..  +++|++|+.||.|++||+++.
T Consensus       267 sGaRk~dkIl~WDiR~~~~--pv~~L~rhv~~TNQRI~FDld~~--~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  267 SGARKDDKILCWDIRYSRD--PVYALERHVGDTNQRILFDLDPK--GEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             ccccCCCeEEEEeehhccc--hhhhhhhhccCccceEEEecCCC--CceeeccCCCccEEEEecCCC
Confidence            8884 78899999997654  6777888876 445555654322  999999999999999999983

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=1.3e-18  Score=145.79  Aligned_cols=255  Identities=16%  Similarity=0.134  Sum_probs=173.0

Q ss_pred             ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCcee--eEE----eccCceeeEEEEEe----CCEEEEec
Q 018591            7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRM--FTK----FGHGDGSVKAVVTV----GNKVFTAH   73 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~--~~~----~~~~~~~v~~~~~~----~~~l~s~~   73 (353)
                      ++-..+.. ..+|+|++|+   ..+++.|..+|.|.+||+..+..  ...    ...|..++.++.|.    +.-+++++
T Consensus       234 ~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  234 TPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            34444443 5689999995   88999999999999999987655  222    24678899999996    45699999


Q ss_pred             CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591           74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL  150 (353)
Q Consensus        74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v  150 (353)
                      .||.|..|+++.-....-.........                    ...-..-...+++++|.+   ..+++|+.+|.|
T Consensus       313 sDG~i~~W~~~~l~~P~e~~~~~~~~~--------------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v  372 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSLPVEGLLLESKKH--------------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV  372 (555)
T ss_pred             cCCcEeeeeccccccchhhcccccccc--------------------cccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence            999999998765432111110000000                    000002334678888877   899999999999


Q ss_pred             EEEEcCC---c-----eeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCC-CCCcccccceeeeeccCCceee
Q 018591          151 KVWRVAD---L-----KCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKE-LGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       151 ~iwd~~~---~-----~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                      .-=+-..   .     +....+..|.++|+++.++|   ..+++++ |.++++|... ...     ++..+..+...+ +
T Consensus       373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-----Pl~~~~~~~~~v-~  445 (555)
T KOG1587|consen  373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-----PLLSLDSSPDYV-T  445 (555)
T ss_pred             EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-----cchhhhhcccee-e
Confidence            8733221   1     22334566889999999844   3555555 9999999887 443     555555555554 9


Q ss_pred             EEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591          219 SVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       219 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      +++|||.. ..|+++..||.+.+||+.......................+.+|+.|++|...|++.+|++..
T Consensus       446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            99999964 578888999999999998764333222222211222233334589999999999999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=1.6e-19  Score=147.13  Aligned_cols=231  Identities=15%  Similarity=0.149  Sum_probs=165.9

Q ss_pred             ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCC
Q 018591           72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDK  148 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg  148 (353)
                      .+..|.|-|++++......-..+..+                            -....|+.+.|+|   ..|++++.||
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~WdPFD~~rLAVa~ddg  650 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWDPFDDERLAVATDDG  650 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccCCCChHHeeecccCc
Confidence            45568999999987652221122111                            2456799999999   8999999999


Q ss_pred             cEEEEEcCC-------ceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591          149 TLKVWRVAD-------LKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       149 ~v~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                      .|++|.+..       ..+...+..|...|+++.|++   +.|+++++|-+|++||+++..     ....+.+|.+.+ .
T Consensus       651 ~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtdqI-f  724 (1012)
T KOG1445|consen  651 QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTDQI-F  724 (1012)
T ss_pred             eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcCce-e
Confidence            999999864       345567788999999999944   699999999999999999998     778899999987 9


Q ss_pred             EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC----CeEEEEecCCCcc-e
Q 018591          219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD----KSIGIWKREAFGK-L  293 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~-~  293 (353)
                      .++|+|+|+.+++.+.||++++|+.+........-....+..+.-.-++.+|+++++.+.|    ..|.+||.++... +
T Consensus       725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p  804 (1012)
T KOG1445|consen  725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP  804 (1012)
T ss_pred             EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc
Confidence            9999999999999999999999999886433222222233445556667789988887765    4688888765331 0


Q ss_pred             EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      .....+.-... +.--.+.+|   .+-++++|-.|..|.+|++-...
T Consensus       805 l~t~~lDvaps-~LvP~YD~D---s~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  805 LYTQVLDVAPS-PLVPHYDYD---SNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ceeeeecccCc-cccccccCC---CceEEEecCCCceEEEEEecCCC
Confidence            01111110000 111123333   26788999999999999986554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=5.2e-17  Score=132.83  Aligned_cols=272  Identities=10%  Similarity=0.132  Sum_probs=164.1

Q ss_pred             EEEEeCCCcEEEEeCCC-ce--eeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           29 ILSASQGKDIIVWQQPD-LR--MFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        29 l~s~~~dg~v~vwd~~~-~~--~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      +++...|+.|++||+.+ ++  .+..+.. .+....+.++  +++|+++ ..++.|.+|+++...  ........     
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~-----   76 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAES-----   76 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeee-----
Confidence            34447789999999964 33  4455543 3445566776  7777665 457899999997321  11111111     


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC-c---eeeeeccccCcceEEEE
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD-L---KCLESIKAHDDAVNGLV  175 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~-~---~~~~~~~~~~~~v~~i~  175 (353)
                                             ........+.++|  +.+++++ .++.|.+|++++ +   +.+..+.+ .....+++
T Consensus        77 -----------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~  132 (330)
T PRK11028         77 -----------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSAN  132 (330)
T ss_pred             -----------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeE
Confidence                                   1122345788888  5566554 488999999964 2   22233322 23456677


Q ss_pred             EeCC--eE-EEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccccccce
Q 018591          176 ASKG--IV-YSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRW  250 (353)
Q Consensus       176 ~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  250 (353)
                      ++++  ++ ++...++.|.+||+.+.............. ....+ ..++|+|+++++++... ++.|.+|++.......
T Consensus       133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p-~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        133 IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP-RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC-ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            7433  55 455567999999997633110000011111 12233 78999999999988876 8999999997421112


Q ss_pred             eeeeecccc------cee--EEEEEEcCcEEEEec-CCCeEEEEecCCCc-ceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591          251 KLACETKAH------EMA--VLCVCLVGEFLCSGS-ADKSIGIWKREAFG-KLCRVGAITGHEGPVKCLQASPNAVGGGF  320 (353)
Q Consensus       251 ~~~~~~~~~------~~~--v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  320 (353)
                      +........      ...  -..+++++++++++. .++.|.+|+++... ....+..... ......+.++|+    |+
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d----g~  286 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS----GK  286 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC----CC
Confidence            222222111      111  245667899888875 47899999996543 2222222221 124567899999    88


Q ss_pred             EEEEccC-CCeEEEEEcCC
Q 018591          321 LLYSGSL-DKSLRVWWVSK  338 (353)
Q Consensus       321 ~l~s~~~-dg~i~iw~~~~  338 (353)
                      +|+++.. +++|.+|++..
T Consensus       287 ~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        287 YLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEEEEEccCCcEEEEEEcC
Confidence            8887765 89999998853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=5.2e-16  Score=132.49  Aligned_cols=283  Identities=28%  Similarity=0.477  Sum_probs=204.9

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeC-CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CC-EEEEecCCCcEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQ-GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIR   79 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~   79 (353)
                      ......+.+|...|.+++|+  ++.+++++. |+.+++|+...+..+..+..|...|.++.+.  +. .+++++.|+.++
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            46778899999999999996  668888885 9999999999989999999999999999998  44 455559999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      +||...+.     ....                          .+.+|.... ...|++  ..+++++.|+.+++|+...
T Consensus       225 ~wd~~~~~-----~~~~--------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~  272 (466)
T COG2319         225 LWDLSTGK-----LLRS--------------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS  272 (466)
T ss_pred             EEECCCCc-----EEee--------------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence            99776333     1110                          122566554 336777  5888999999999999986


Q ss_pred             cee-eeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeee--ccCCceeeEEEEcCCCCeEEee
Q 018591          158 LKC-LESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILE--GHKDVSLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       158 ~~~-~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~  232 (353)
                      ... ...+..|...+.++.+.+  ..+++++.|+.+.+||.....     ......  .|.. .+..+.+.+++..++.+
T Consensus       273 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-----LLSSLTLKGHEG-PVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             CCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-----eEEEeeecccCC-ceEEEEECCCCCEEEEe
Confidence            554 444467889999999954  577778888889999888776     333332  5555 34888884332455555


Q ss_pred             -cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEE-EecCCCeEEEEecCCCcceEEeccccCCCcCeEEE
Q 018591          233 -GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLC-SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL  309 (353)
Q Consensus       233 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~  309 (353)
                       ..|+.+.+|+.....    .......... +..+.+. ...+. .+..++.+.+|+......   ......+...+...
T Consensus       347 ~~~d~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  418 (466)
T COG2319         347 GSDDGTIRLWDLRTGK----PLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL---LRNLDGHTSRVTSL  418 (466)
T ss_pred             ecCCCcEEeeecCCCc----eeEEecCCce-EEEEEECCCCCEEEEecCCCceEEEecccCee---eeeccCCCCcEEEE
Confidence             678999999998874    1111111111 3333332 23333 378899999999987663   32233222789999


Q ss_pred             EeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          310 QASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       310 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .++++    +..+++++.++.+++|+...
T Consensus       419 ~~~~~----~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         419 DFSPD----GKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EECCC----CcEEEEecCCCcEEEEeccC
Confidence            99999    88999999999999999887

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.9e-19  Score=132.36  Aligned_cols=200  Identities=15%  Similarity=0.135  Sum_probs=155.8

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE----eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA----SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      ..++++-..|.|++||..+++.+..+++++..++.+.|    .+..+.+++.||+|++||++....   .....+..+.+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e---~a~~~~~~~~~  117 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE---SARISWTQQSG  117 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh---hhheeccCCCC
Confidence            56888999999999999999999999999999999998    344899999999999999998762   23334455554


Q ss_pred             ceeeEEEEcCCCCeEEeecC----CCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEec
Q 018591          215 VSLNSVVVSDDGKWVYGGGS----DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~  287 (353)
                      .+..+++..-+++.+++|..    +-.+.+||++..+..  +..-...|...|+++.|.   +++|++|+.||.|.+||+
T Consensus       118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             CcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            45567777667788888753    668999999987532  233446688888888774   789999999999999999


Q ss_pred             CCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          288 EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       288 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ........+...-.|...|..+.|..+   .-+.+.+-+..++..+|+++.+.+....+
T Consensus       196 ~~d~EeDaL~~viN~~sSI~~igw~~~---~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  196 KKDNEEDALLHVINHGSSIHLIGWLSK---KYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             CCCcchhhHHHhhcccceeeeeeeecC---CcceEEEEEccCceeEEEccCCChhhccc
Confidence            865443344444557788999999987   13568888999999999999988654433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.7e-17  Score=136.07  Aligned_cols=289  Identities=15%  Similarity=0.194  Sum_probs=199.8

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC----ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPD----LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~   85 (353)
                      .|+..++|.+++  ++++|+|..||.|.+|.--.    ......+.=|...|.+++|+  |.+|++|+..|.+.+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            477778999997  89999999999999997322    23345566788899999998  99999999999999999998


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES  163 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~  163 (353)
                      ++..                                 .+..-.++|..+.++|  ++.+....|+.|.+....+.+....
T Consensus       283 ~~kq---------------------------------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  283 GKKQ---------------------------------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             CCcc---------------------------------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence            8621                                 1114567899999999  7788888899999998866555444


Q ss_pred             cccc-----------CcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-----eeeEEEEcCC
Q 018591          164 IKAH-----------DDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-----SLNSVVVSDD  225 (353)
Q Consensus       164 ~~~~-----------~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~  225 (353)
                      +.+-           .+-.+.++++  .+.++-.+..|.|.+||+-+..............+.+.     .+++++.+..
T Consensus       330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~  409 (792)
T KOG1963|consen  330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF  409 (792)
T ss_pred             ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc
Confidence            4321           2334556663  45888889999999999987763211111111111111     2467777778


Q ss_pred             CCeEEeec--------CC--CcEEEeeccccccceeeeeec-cccceeEE--EEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591          226 GKWVYGGG--------SD--GFVMGWEGNVEIVRWKLACET-KAHEMAVL--CVCLV--GEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       226 ~~~l~~~~--------~d--g~i~i~d~~~~~~~~~~~~~~-~~~~~~v~--~~~~~--~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      |.++++.-        .|  -.+++|-.......+.+.... ..|.....  ++...  ....++++.||.+++|-+...
T Consensus       410 gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~  489 (792)
T KOG1963|consen  410 GSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD  489 (792)
T ss_pred             ceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence            88888763        23  357788777665555544433 23444333  33322  338899999999999998443


Q ss_pred             cc-------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          291 GK-------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       291 ~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +.       ..+...-.-|..++++++|+.|    |..|+. +.|++|.+||..+..
T Consensus       490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d----Gslla~-s~~~~Itiwd~~~~~  541 (792)
T KOG1963|consen  490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQD----GSLLAV-SFDDTITIWDYDTKN  541 (792)
T ss_pred             cccCcCccceEEeeeeccccCcccchhhcCC----CcEEEE-ecCCEEEEecCCChh
Confidence            32       1222222237889999999999    865554 567799999998853

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=4e-17  Score=122.33  Aligned_cols=207  Identities=14%  Similarity=0.123  Sum_probs=155.8

Q ss_pred             eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc---eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591           10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL---RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      ..+.--..+|+|.+|+  ...+|.+-....|.||.....   +...++..|...|+.+.|.  .+.|++++.|..-++|.
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            4444456899999996  778999999899999987654   4678889999999999998  78999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      ...+..                             -.+..++..+....+++.|+|  +.+++|+....|.+|-++...-
T Consensus        84 ~~~~~~-----------------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd  134 (361)
T KOG1523|consen   84 QPSGGT-----------------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND  134 (361)
T ss_pred             cCCCCe-----------------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence            843331                             112233447889999999999  9999999999999998765332


Q ss_pred             ----eeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCC-----CCCc-------cc-ccceeeeeccCCceeeEEE
Q 018591          161 ----LESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKE-----LGKS-------HC-HSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       161 ----~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~-----~~~~-------~~-~~~~~~~~~~~~~~v~~~~  221 (353)
                          ...-+.+...|+++.|.++  ++++|+.|+..|+|..-     ....       .+ ..+...+....+. +..+.
T Consensus       135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-vh~v~  213 (361)
T KOG1523|consen  135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-VHGVL  213 (361)
T ss_pred             eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-eeeeE
Confidence                1122456788999999444  88899999999999632     1110       00 1112222223333 59999


Q ss_pred             EcCCCCeEEeecCCCcEEEeecccc
Q 018591          222 VSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       222 ~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      |+|+|..|+-.+.|+.+.+-|....
T Consensus       214 fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  214 FSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eCCCCCEeeEecCCCceEEeecCCC
Confidence            9999999999999999999988765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.4e-16  Score=133.11  Aligned_cols=236  Identities=16%  Similarity=0.214  Sum_probs=149.5

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC---C--cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-----CCEEE-
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC---G--EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVF-   70 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~---~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~-   70 (353)
                      +..+++++..|++|+.+++++.+.   .  .++++++.||.|++||...+++++++..+- ++.++.+.     ....+ 
T Consensus        43 S~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~  121 (792)
T KOG1963|consen   43 STATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVY  121 (792)
T ss_pred             ecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeE
Confidence            456888999999999999999995   2  688899999999999999999999886642 33333331     11111 


Q ss_pred             EecCC------------CcEEEEEcccCccceeEEeecc--------ccccceeeeecccceeEeeccc------ceeee
Q 018591           71 TAHQD------------SRIRVWKVSRSSENVFRLVDTL--------PTTKDYLGKFMKQSNYVQTRRH------HKRLW  124 (353)
Q Consensus        71 s~~~d------------g~i~~w~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~  124 (353)
                      ....|            ++++-..+.+............        .....+................      ....-
T Consensus       122 ~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~  201 (792)
T KOG1963|consen  122 VSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT  201 (792)
T ss_pred             eecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh
Confidence            11111            1122222211110000000000        0000111111111111111111      00111


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC----ceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCC
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD----LKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~  196 (353)
                      ..|...+++.+++|  +++++|..||.|.+|.--.    ......+.-|..+|++++|  .+.+|++|+.++.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            25777789999999  8999999999999996322    1233455678899999999  34499999999999999999


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                      +++       +.+-..-+.+|..+.++||+.+.+....|..|.+....+
T Consensus       282 T~~-------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  282 TGK-------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             CCC-------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            886       233333445569999999999999999999999987644

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.81  E-value=3.6e-18  Score=126.11  Aligned_cols=207  Identities=18%  Similarity=0.219  Sum_probs=148.8

Q ss_pred             eeeecCCceEEEEEeC---CeEEEecCC-------CcEEEEEcCCc---------eeeeecc-ccCcceEEEEEeCC--e
Q 018591          123 LWIEHADSISCLTVYN---GLIYSGSWD-------KTLKVWRVADL---------KCLESIK-AHDDAVNGLVASKG--I  180 (353)
Q Consensus       123 ~~~~~~~~i~~~~~~~---~~l~~~~~d-------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~i~~~~~--~  180 (353)
                      ++..|.+.|..++-+|   ..|+++..+       -.+.+|.+...         +++..+. .+-+.|.|+.|.|+  .
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            3447889999999988   566666542       24679988542         2333443 45568999999444  4


Q ss_pred             EEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591          181 VYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      +++ -.|..|.+|++.........+..... .+... .++-+|+|  +++.+++. .|+++..||+++...   ......
T Consensus       138 las-m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~-ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~---~~sI~d  211 (370)
T KOG1007|consen  138 LAS-MDDNNIVLWSLDESSKIVAEVLSSESAEMRHS-FTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK---NNSIED  211 (370)
T ss_pred             eEE-eccCceEEEEcccCcchheeecccccccccce-ecccccCCCCccceEEEe-CCCcEEEEEccchhh---hcchhh
Confidence            444 44899999999887632111111111 12222 37788998  67777665 588999999998742   233345


Q ss_pred             ccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          258 AHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       258 ~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      .|...+..+.++   ..+|++|+.||.|+|||.+..+.  ++.++.+|...|.++.|.|..   .+++++||.|..|.+|
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~h---dqLiLs~~SDs~V~Ls  286 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEH---DQLILSGGSDSAVNLS  286 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCcc---ceEEEecCCCceeEEE
Confidence            677788888887   34899999999999999987654  788899999999999999973   6899999999999999


Q ss_pred             EcCCCC
Q 018591          335 WVSKQS  340 (353)
Q Consensus       335 ~~~~~~  340 (353)
                      ....-.
T Consensus       287 ca~svS  292 (370)
T KOG1007|consen  287 CASSVS  292 (370)
T ss_pred             eccccc
Confidence            866543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=6.1e-18  Score=135.21  Aligned_cols=255  Identities=17%  Similarity=0.144  Sum_probs=179.9

Q ss_pred             CccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEE------e----CCEEEEecCCCcEEEEE
Q 018591           14 GHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT------V----GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus        14 ~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~------~----~~~l~s~~~dg~i~~w~   82 (353)
                      -|...|.|+.|. ..-+..++.|..+.+|.-.+.+....+.-....+....+      .    .+.++.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            477788888886 556666667777777764444333333222222221111      1    35688899999999877


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      -...-+                                 +....|.+.+.+-.|++  .-|++++.||.|++|. ++|-.
T Consensus        92 k~~rVE---------------------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML  137 (737)
T KOG1524|consen   92 KSARVE---------------------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML  137 (737)
T ss_pred             ccchhh---------------------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence            543321                                 11127999999999999  7899999999999998 56766


Q ss_pred             eeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          161 LESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      ..++.....+|.|++|.++   .+++.+  +.+.+=.+....     ..-.++.|.+-+ .++.|++..+.+++|+.|-.
T Consensus       138 RStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~-----k~i~WkAHDGii-L~~~W~~~s~lI~sgGED~k  209 (737)
T KOG1524|consen  138 RSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS-----KIIRWRAHDGLV-LSLSWSTQSNIIASGGEDFR  209 (737)
T ss_pred             HHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc-----ceeEEeccCcEE-EEeecCccccceeecCCcee
Confidence            6666667889999999332   444443  566666665544     456778888765 99999999999999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEEcCcE-EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      .++||-...     .......|..++++++|+... ++.++. +++|+              -+...+.|..++||+|  
T Consensus       210 fKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R~--------------~~p~~GSifnlsWS~D--  267 (737)
T KOG1524|consen  210 FKIWDAQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NTARF--------------SSPRVGSIFNLSWSAD--  267 (737)
T ss_pred             EEeecccCc-----ccccCChhccceeeeeeccccceeeeee-eeeee--------------cCCCccceEEEEEcCC--
Confidence            999998764     445556788899999998544 343433 34441              1234678999999999  


Q ss_pred             CCCeEEEEccCCCeEEEE
Q 018591          317 GGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       317 ~~~~~l~s~~~dg~i~iw  334 (353)
                        |..++.|+..|.+.+=
T Consensus       268 --GTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  268 --GTQATCGTSTGQLIVA  283 (737)
T ss_pred             --CceeeccccCceEEEe
Confidence              9999999999987653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=3.3e-18  Score=140.40  Aligned_cols=237  Identities=14%  Similarity=0.181  Sum_probs=177.3

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      ....|.++++|+||.+.|+|++|+  |+++|+|+.|..|.+|+.+- +-+..+ .|...|.|+.|+  ...|++++-. .
T Consensus        39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-d  115 (1081)
T KOG1538|consen   39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLASCSLS-D  115 (1081)
T ss_pred             eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhhcchh-h
Confidence            346788999999999999999995  99999999999999998532 222222 478899999999  7788888874 6


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      .-+|..+.......                                  .....+.+.+|..  .+++.|-.||+|.+-+-
T Consensus       116 FglWS~~qK~V~K~----------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen  116 FGLWSPEQKSVSKH----------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             ccccChhhhhHHhh----------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence            78999876542111                                  2345788889988  89999999999999874


Q ss_pred             CCceeeeec---cccCcceEEEEEeCC-------eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC
Q 018591          156 ADLKCLESI---KAHDDAVNGLVASKG-------IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD  225 (353)
Q Consensus       156 ~~~~~~~~~---~~~~~~v~~i~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (353)
                       +++....+   .+...+|.+++|+++       .+++.....++.++.+....      +..-+.-.-.+ .++.+.++
T Consensus       162 -~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~------Igk~r~L~FdP-~CisYf~N  233 (1081)
T KOG1538|consen  162 -NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ------IGKDRALNFDP-CCISYFTN  233 (1081)
T ss_pred             -CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee------ecccccCCCCc-hhheeccC
Confidence             44443333   346789999999332       78888888999999876543      21112222233 78999999


Q ss_pred             CCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEecC
Q 018591          226 GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       226 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~  288 (353)
                      |.++..|+.|+.+++|..+.     ....+......++  ..+.|++++++.|+.||+|.-|++-
T Consensus       234 GEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  234 GEYILLGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CcEEEEccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            99999999999999997554     2333333334444  4556789999999999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1.3e-17  Score=129.29  Aligned_cols=200  Identities=24%  Similarity=0.234  Sum_probs=148.6

Q ss_pred             EEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          132 SCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       132 ~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      .+++|+.  ..+++|+.||.+|+|+..+...+.....|...|.++.|++ + .|++.+.| ..++|+.+++.     ...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-----~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-----ALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-----hhh
Confidence            5677776  8999999999999999888888888889999999999944 3 88888888 99999999985     333


Q ss_pred             eee-ccCCceeeEEEEcCCC-----CeEEeecCCCcEEEeeccccccc--eeeeeecccc-ceeEEEEEEcCcEEEEecC
Q 018591          208 ILE-GHKDVSLNSVVVSDDG-----KWVYGGGSDGFVMGWEGNVEIVR--WKLACETKAH-EMAVLCVCLVGEFLCSGSA  278 (353)
Q Consensus       208 ~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~  278 (353)
                      ... ...+.....+.|+.++     ..++....-+.|+.|++......  .........+ ....+.++.+|++++.|+.
T Consensus       222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence            322 3334445778888776     33444455667777776554221  0111112222 3444555667999999999


Q ss_pred             CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      ||.|.|++..+.+...  ...+.|...|+.+.|+|+    .+++++.+.|..+++..+.-....+
T Consensus       302 dGsVai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pd----sr~~~svSs~~~~~v~~l~vd~~~~  360 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPD----SRYLASVSSDNEAAVTKLAVDKTMQ  360 (398)
T ss_pred             CCcEEEEEeceeeeeE--eehhhheeeeeeEEEcCC----cCcccccccCCceeEEEEeeccccc
Confidence            9999999998776432  235679999999999999    9999999999999999887654444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=7.2e-19  Score=140.84  Aligned_cols=219  Identities=17%  Similarity=0.235  Sum_probs=156.0

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe----CCEEEEecCCCcEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV----GNKVFTAHQDSRIR   79 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~----~~~l~s~~~dg~i~   79 (353)
                      .+.+.|.||++.|+|++|+  |.+|++||.|-.+.|||.-..+++..+ .+|...|.++.|-    ...+++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            3457899999999999996  999999999999999998888877776 6899999999996    66889999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~  156 (353)
                      ++|+...++.-..-                      ......+.|..|...|.-++..|   +.+.+++.||+++-+|++
T Consensus       121 lfdl~~~~~~~~d~----------------------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDH----------------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             EEeccccccccccc----------------------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeeccc
Confidence            99998643110000                      00112345557899999998877   789999999999999998


Q ss_pred             Ccee-------eeec---cccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcc---------ccc----ceee-e
Q 018591          157 DLKC-------LESI---KAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSH---------CHS----LKGI-L  209 (353)
Q Consensus       157 ~~~~-------~~~~---~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~----~~~~-~  209 (353)
                      ....       ...+   ...--...++.+   .+.+|++|+.|-..++||.+...+.         +.+    +.+. .
T Consensus       179 Eph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~  258 (758)
T KOG1310|consen  179 EPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS  258 (758)
T ss_pred             CCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec
Confidence            6321       1111   111234456666   3449999999999999995422110         000    0111 1


Q ss_pred             eccC----------CceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591          210 EGHK----------DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       210 ~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  247 (353)
                      .+|.          ...++-++|+|+|..|++.-....|+++|+...+
T Consensus       259 p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  259 PGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             CccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            1111          1114668899999888887777789999987654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=3e-17  Score=126.12  Aligned_cols=260  Identities=13%  Similarity=0.161  Sum_probs=177.5

Q ss_pred             ccCceEEEEEC----CcEEEEEeCCCcEEEEeCCCceeeEEe------ccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591           15 HVGSVSSLALC----GEFILSASQGKDIIVWQQPDLRMFTKF------GHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        15 h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~   84 (353)
                      -...|++++|.    .+.+...+.|..+....++...+...+      ...+++|..+...+..|++|-.+|.+.+|..+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence            34678888883    445666657777888887766655443      34467888888888899999999999999998


Q ss_pred             cCccc--eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCC--CcEEEEEcCC
Q 018591           85 RSSEN--VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWD--KTLKVWRVAD  157 (353)
Q Consensus        85 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d--g~v~iwd~~~  157 (353)
                      .+...  ....+                               .-...+..+.-.+   ..+++|+..  ..+.+||+++
T Consensus       134 ~~d~hss~l~~l-------------------------------a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~  182 (412)
T KOG3881|consen  134 SGDLHSSKLIKL-------------------------------ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ  182 (412)
T ss_pred             CCccccccceee-------------------------------ecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence            66411  01111                               1112233333333   566668877  7788888876


Q ss_pred             ceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC--CCeEEeecCC
Q 018591          158 LKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD--GKWVYGGGSD  235 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d  235 (353)
                      .+.+.+-+.-         +++.|     +=.+.+|+                       +.+.|-+.  ...|++++.-
T Consensus       183 ~~qiw~aKNv---------pnD~L-----~LrVPvW~-----------------------tdi~Fl~g~~~~~fat~T~~  225 (412)
T KOG3881|consen  183 SKQIWSAKNV---------PNDRL-----GLRVPVWI-----------------------TDIRFLEGSPNYKFATITRY  225 (412)
T ss_pred             ceeeeeccCC---------CCccc-----cceeeeee-----------------------ccceecCCCCCceEEEEecc
Confidence            6443332211         22222     22355554                       34445444  6678999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA  315 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  315 (353)
                      +.+++||.+.+..+ .....+..+....+.+.++++++++|..-|.+..||++.++.  ....+++-.+.|+++..+|. 
T Consensus       226 hqvR~YDt~~qRRP-V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~-  301 (412)
T KOG3881|consen  226 HQVRLYDTRHQRRP-VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPT-  301 (412)
T ss_pred             eeEEEecCcccCcc-eeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--eccccCCccCCcceEEEcCC-
Confidence            99999999866422 222333444555566677899999999999999999998773  22337889999999999999 


Q ss_pred             CCCCeEEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591          316 VGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKS  349 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  349 (353)
                         +++|+++|-|..|||+|+++.+.+....-+.
T Consensus       302 ---~~~las~GLDRyvRIhD~ktrkll~kvYvKs  332 (412)
T KOG3881|consen  302 ---HPVLASCGLDRYVRIHDIKTRKLLHKVYVKS  332 (412)
T ss_pred             ---CceEEeeccceeEEEeecccchhhhhhhhhc
Confidence               8999999999999999999987776554433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=2e-17  Score=120.60  Aligned_cols=258  Identities=14%  Similarity=0.143  Sum_probs=168.6

Q ss_pred             CCCceeeeee-CccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCC-cEEE
Q 018591            4 KSHRSLAVLS-GHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDS-RIRV   80 (353)
Q Consensus         4 ~~~~~~~~l~-~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-~i~~   80 (353)
                      ++.+.+-.++ .|+..|+.+..- ++.|.+-+.|+.+.+|++.-+..+.   .|+-.++++.|....+...+... ..-.
T Consensus        43 qt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~  119 (323)
T KOG0322|consen   43 QTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLE  119 (323)
T ss_pred             ecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhhee
Confidence            3455556666 567788888774 7899999999999999987655443   23455666666544444443332 1111


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEEecCCCcEEEEEc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~  155 (353)
                      ++-+...    . ..........-....++         +   -.+..+.+.|..+..     -++++|.++|.+.+||+
T Consensus       120 yp~rgsd----e-~h~~D~g~~tqv~i~dd---------~---~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~  182 (323)
T KOG0322|consen  120 YPSRGSD----E-THKQDGGDTTQVQIADD---------S---ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL  182 (323)
T ss_pred             cCCcccc----h-hhhhccCccceeEccCc---------h---hccccCceeeeeccccccceEEEEEeccCCeEEEEEc
Confidence            1111110    0 00000000000000000         0   013456677776433     47888999999999999


Q ss_pred             CCceeee----------eccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591          156 ADLKCLE----------SIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       156 ~~~~~~~----------~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                      .++..+.          ....|..+|.++.+.  -+.=++++.+..+..|++....... ............ +..+.+.
T Consensus       183 S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-q~~~e~~lknpG-v~gvrIR  260 (323)
T KOG0322|consen  183 STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-QIRKEITLKNPG-VSGVRIR  260 (323)
T ss_pred             cCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc-cccceEEecCCC-ccceEEc
Confidence            9874333          335689999999993  3366788888889999887552111 112222222233 4889999


Q ss_pred             CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~  287 (353)
                      ||++.+++++.|+.|++|+.++.    .+...+..|...+.+++|+  ..++|+++.|++|.+|++
T Consensus       261 pD~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  261 PDGKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999998    6777788899999999987  479999999999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=1.2e-15  Score=116.58  Aligned_cols=235  Identities=14%  Similarity=0.114  Sum_probs=167.0

Q ss_pred             eeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591           57 GSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL  134 (353)
Q Consensus        57 ~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  134 (353)
                      ..+..+.|+  ...|..|+.|| .++++.+.-..    +....                            .....|.-+
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----~~~~~----------------------------~~~~~IvEm   52 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----CFSKD----------------------------TEGVSIVEM   52 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHH----hhccc----------------------------CCCeEEEEe
Confidence            345666677  44566677775 47887765431    00000                            123356667


Q ss_pred             EEeCCeEEEecCC--CcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeecc
Q 018591          135 TVYNGLIYSGSWD--KTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGH  212 (353)
Q Consensus       135 ~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  212 (353)
                      -|+..+++..+.+  +.+++++......+..+. ...+|.++.++.+.|+++-.+. |+|||+++.+     ++..+..-
T Consensus        53 LFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~  125 (391)
T KOG2110|consen   53 LFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-----LLHTIETT  125 (391)
T ss_pred             ecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccce-----eehhhhcc
Confidence            7777666665554  349999998887777764 3678999999888888776654 9999999987     55555544


Q ss_pred             CCce--eeEEEEcCCCCeEEee--cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe-EEEE
Q 018591          213 KDVS--LNSVVVSDDGKWVYGG--GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS-IGIW  285 (353)
Q Consensus       213 ~~~~--v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~iw  285 (353)
                      ...+  +.++.+++.+.+++.-  ...|.|.+||..+-    +....+..|.+++.+++++  |.+||+++..|+ ||+|
T Consensus       126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf  201 (391)
T KOG2110|consen  126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF  201 (391)
T ss_pred             CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence            2222  2444444455677753  34689999999887    6667778999998888875  999999999886 6999


Q ss_pred             ecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          286 KREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       286 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      .+.++++....+.-. ....|.+++|+|+    +++|++.|..++|++|.+++..
T Consensus       202 ~v~~G~kl~eFRRG~-~~~~IySL~Fs~d----s~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  202 SVPEGQKLYEFRRGT-YPVSIYSLSFSPD----SQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EcCCccEeeeeeCCc-eeeEEEEEEECCC----CCeEEEecCCCeEEEEEecccc
Confidence            999998443332211 1346899999999    9999999999999999998765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.9e-17  Score=125.86  Aligned_cols=253  Identities=11%  Similarity=0.072  Sum_probs=176.0

Q ss_pred             EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee-EEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      +.+.+|.+.|.++.|+  +.+|++|+.|..+++|.++..-.... +.+....                          ..
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~--------------------------~~  103 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME--------------------------HP  103 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc--------------------------Cc
Confidence            3456799999999998  88999999999999999876431111 1111110                          14


Q ss_pred             cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc--cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCc
Q 018591          127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA--HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      |...|.|++|+.  ..+++|..+++|.+.|+++.+.+..+..  ..+.|+.+..  .++.+++.+.++.|.+||.+....
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN  183 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence            678999999987  8899999999999999999888777632  2458999888  456999999999999999987651


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccce---e--EEEEEEcCcEEE
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM---A--VLCVCLVGEFLC  274 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~--v~~~~~~~~~l~  274 (353)
                         .....+....+....++.|+|.. .+|++.+..+-+-+||.+...........+.+-..   .  -.-+.++|..+.
T Consensus       184 ---~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m  260 (609)
T KOG4227|consen  184 ---PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM  260 (609)
T ss_pred             ---CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence               12223344444445788999964 67788888889999999876432222222222222   1  123445577777


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCC-------CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGH-------EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +--....-.+||+.+...  .+..+ .|       ...+.+++|.-+     ..+++|+.+-.|++|.+...
T Consensus       261 siRR~~~P~~~D~~S~R~--~V~k~-D~N~~GY~N~~T~KS~~F~~D-----~~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  261 SIRRGKCPLYFDFISQRC--FVLKS-DHNPNGYCNIKTIKSMTFIDD-----YTVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             hhhccCCCEEeeeecccc--eeEec-cCCCCcceeeeeeeeeeeecc-----eeeeccCcccceEEEecCCC
Confidence            666555566788776432  12111 12       235788888876     55999999999999998753

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=8.9e-18  Score=134.70  Aligned_cols=245  Identities=18%  Similarity=0.248  Sum_probs=160.2

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      .+.+++.+|++.|+++.|+  |.+|++|+.|-.+.|||.-..+     ++..+..                         
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-----llhsI~T-------------------------   90 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-----LLHSIST-------------------------   90 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-----eeeeeec-------------------------
Confidence            3456788999999999998  9999999999999999987544     3333332                         


Q ss_pred             eecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC----------ceeeeeccccCcceEEEEE---eCCeEEEEcCC
Q 018591          125 IEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD----------LKCLESIKAHDDAVNGLVA---SKGIVYSASAD  187 (353)
Q Consensus       125 ~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~i~~---~~~~l~~~~~d  187 (353)
                       +|...|.++.|-|    ..+++|..|..|+++|+..          .+....+..|...|..|+.   .|+.+.+++.|
T Consensus        91 -gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED  169 (758)
T KOG1310|consen   91 -GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED  169 (758)
T ss_pred             -ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC
Confidence             8999999999998    7899999999999999974          2344556778888888888   44599999999


Q ss_pred             CcEEEEeCCCCCcc-----cccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591          188 GKIKAWGKELGKSH-----CHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       188 g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                      |+|+-+|++....-     .......+...--. ..++.++|. ..+|++|+.|...++||.+...+...-..       
T Consensus       170 GtirQyDiREph~c~p~~~~~~~l~ny~~~lie-lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~-------  241 (758)
T KOG1310|consen  170 GTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE-LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG-------  241 (758)
T ss_pred             cceeeecccCCccCCccccccHHHHHhchhhhe-eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc-------
Confidence            99999999975410     00111111111122 378899985 56899999999999999754321111000       


Q ss_pred             eEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          262 AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                       .....+ .      -.++.|+.|.....+...-  .+...-..++-+.|+|+   +.++|++-+.+ .|+++++..++.
T Consensus       242 -~~~~~p-p------~~~~cv~yf~p~hlkn~~g--n~~~~~~~~t~vtfnpN---GtElLvs~~gE-hVYlfdvn~~~~  307 (758)
T KOG1310|consen  242 -TMNTCP-P------KDCRCVRYFSPGHLKNSQG--NLDRYITCCTYVTFNPN---GTELLVSWGGE-HVYLFDVNEDKS  307 (758)
T ss_pred             -cccCCC-C------cccchhheecCccccCccc--ccccceeeeEEEEECCC---CcEEEEeeCCe-EEEEEeecCCCC
Confidence             000000 0      0123333333221110000  00001123677889998   23555555544 799999988776


Q ss_pred             ccc
Q 018591          342 TSD  344 (353)
Q Consensus       342 ~~~  344 (353)
                      ...
T Consensus       308 ~~~  310 (758)
T KOG1310|consen  308 PTP  310 (758)
T ss_pred             cee
Confidence            543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=1.3e-16  Score=137.48  Aligned_cols=235  Identities=18%  Similarity=0.264  Sum_probs=163.7

Q ss_pred             CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeE
Q 018591           66 GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLI  141 (353)
Q Consensus        66 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l  141 (353)
                      ...++++...-.|++||.+.++     .+..+....                        .....|+.+.+-+    .++
T Consensus      1076 ~p~i~~ad~r~~i~vwd~e~~~-----~l~~F~n~~------------------------~~~t~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGR-----LLNGFDNGA------------------------FPDTRVSDLELINEQDDALL 1126 (1387)
T ss_pred             CceeEEcCCcceEEEEecccCc-----eeccccCCC------------------------CCCCccceeeeecccchhhe
Confidence            5678888877799999998877     444333221                        2345688888766    789


Q ss_pred             EEecCCCcEEEEEcC-----Cceeeeeccc-------cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          142 YSGSWDKTLKVWRVA-----DLKCLESIKA-------HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       142 ~~~~~dg~v~iwd~~-----~~~~~~~~~~-------~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      ++|+.||.|++|+--     +.+.+..+.+       ..+.-.-+.|  ..+.|++++.-..|+|||.....     ...
T Consensus      1127 Ltas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~-----~~~ 1201 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ-----VVA 1201 (1387)
T ss_pred             eeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce-----eEe
Confidence            999999999999742     2233332221       1111123455  45678888778999999998776     444


Q ss_pred             eeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeecccccee--EEEEEEc--Cc-EEEEecCCCe
Q 018591          208 ILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA--VLCVCLV--GE-FLCSGSADKS  281 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~~~--~~-~l~~~~~dg~  281 (353)
                      .+....+..++++.-+. .|+.+++|..||.|++||.+..... ..+...+.|...  |..++..  |- .|++|+.||.
T Consensus      1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence            44444554456665543 4799999999999999999886432 345556666666  8777775  33 5999999999


Q ss_pred             EEEEecCCCcceEEeccccCCC--c-CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          282 IGIWKREAFGKLCRVGAITGHE--G-PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~~h~--~-~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      |++||++..... .......|.  + .++++..++.    ...+|+|+. +.|+||++...+.
T Consensus      1281 I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~h----apiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEH----APIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred             EEEEecccCccc-ccceeeeccccCccceeeeeccC----CCeeeecCc-ceEEEEecChhhh
Confidence            999999974211 222223333  3 5999999999    889999999 9999999876543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.7e-17  Score=131.05  Aligned_cols=269  Identities=16%  Similarity=0.180  Sum_probs=191.2

Q ss_pred             eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           48 MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      +...+..|.+.|..+.|+  |..|++++.|..|.+||.....     ....+..                          
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-----~~l~f~S--------------------------  182 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-----PKLSFES--------------------------  182 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccC-----ccccccc--------------------------
Confidence            455678899999999998  9999999999999999998776     2222221                          


Q ss_pred             ecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC-cee--eeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeC
Q 018591          126 EHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD-LKC--LESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGK  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~-~~~--~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~  195 (353)
                      +|...|..-.|-|    ..+++++.||.|++=.+.. +.+  ...+..|.++|.-++.   ++..|.+++.|+.+.-+|+
T Consensus       183 GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl  262 (559)
T KOG1334|consen  183 GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL  262 (559)
T ss_pred             ccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeee
Confidence            7888888777877    7899999999999887643 322  3456679999999998   4458999999999999999


Q ss_pred             CCCCcccccceeeeeccCC--ceeeEEEEcCCC-CeEEeecCCCcEEEeeccccccc--------eeeeeeccccceeEE
Q 018591          196 ELGKSHCHSLKGILEGHKD--VSLNSVVVSDDG-KWVYGGGSDGFVMGWEGNVEIVR--------WKLACETKAHEMAVL  264 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~  264 (353)
                      +...+....  .....+..  .-...++..|.. ..+++++.|..+++||.+.-...        +.+..........|+
T Consensus       263 r~~~pa~~~--~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT  340 (559)
T KOG1334|consen  263 RQDVPAEKF--VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT  340 (559)
T ss_pred             ccCCcccee--eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence            987632111  12222222  123678888865 48999999999999998763211        011111123345678


Q ss_pred             EEEEc--CcEEEEecCCCeEEEEecCCCcc----------eEEeccccCCCc--CeEEEEe-ecCCCCCCeEEEEccCCC
Q 018591          265 CVCLV--GEFLCSGSADKSIGIWKREAFGK----------LCRVGAITGHEG--PVKCLQA-SPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       265 ~~~~~--~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~h~~--~v~~~~~-~~~~~~~~~~l~s~~~dg  329 (353)
                      ++.++  +.-|.++..|-.|++|.-..+..          ......++||..  .|..+-| -|.    ..++++||.-|
T Consensus       341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr----sEyVvSGSDCG  416 (559)
T KOG1334|consen  341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR----SEYVVSGSDCG  416 (559)
T ss_pred             eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc----cceEEecCccc
Confidence            88886  55666677788899996443221          112223778865  4666654 566    78999999999


Q ss_pred             eEEEEEcCCCCCcccccC-CCcccC
Q 018591          330 SLRVWWVSKQSSTSDSEE-KSIISC  353 (353)
Q Consensus       330 ~i~iw~~~~~~~~~~~~~-~~~~~c  353 (353)
                      .|.||+-.+++.+.-.+. +..++|
T Consensus       417 hIFiW~K~t~eii~~MegDr~VVNC  441 (559)
T KOG1334|consen  417 HIFIWDKKTGEIIRFMEGDRHVVNC  441 (559)
T ss_pred             eEEEEecchhHHHHHhhcccceEec
Confidence            999999999888776653 445555

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=9.8e-16  Score=134.01  Aligned_cols=265  Identities=12%  Similarity=0.201  Sum_probs=168.1

Q ss_pred             EeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591           41 WQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR  117 (353)
Q Consensus        41 wd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (353)
                      |+. .|..+..+..|...+..++.+   +.++++||.||+|++|+...-.......                        
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------ 1088 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------ 1088 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee------------------------
Confidence            553 678888888899999888887   5799999999999999987643210000                        


Q ss_pred             ccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-------eeeeecccc-CcceEEE-EE---eCC-eEE
Q 018591          118 RHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL-------KCLESIKAH-DDAVNGL-VA---SKG-IVY  182 (353)
Q Consensus       118 ~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~-~~~v~~i-~~---~~~-~l~  182 (353)
                       .....+......+.++...+  +.+|+++.||.|++.+++..       .+......+ .+.+.++ ++   ... .++
T Consensus      1089 -rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1089 -RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred             -eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEE
Confidence             01112223456677777766  89999999999999998752       112222222 2334444 33   233 778


Q ss_pred             EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccccee
Q 018591          183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA  262 (353)
Q Consensus       183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  262 (353)
                      .+..-+.|..||+++...    ..........+.|++++.+|.+.++++|+..|.+.+||++-+.+.....   .++..+
T Consensus      1168 y~T~~~~iv~~D~r~~~~----~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~---~P~~~~ 1240 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRHD----AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE---HPARAP 1240 (1431)
T ss_pred             EEEeccceEEecchhhhh----HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc---CcccCC
Confidence            888889999999987751    1111112223345999999999999999999999999998763222111   122344


Q ss_pred             EEEEEEc---C--cEEE-Eec-CCCeEEEEecCCCcceEEeccc---------c-------CCCcCeEEEEeecCCCCCC
Q 018591          263 VLCVCLV---G--EFLC-SGS-ADKSIGIWKREAFGKLCRVGAI---------T-------GHEGPVKCLQASPNAVGGG  319 (353)
Q Consensus       263 v~~~~~~---~--~~l~-~~~-~dg~i~iw~~~~~~~~~~~~~~---------~-------~h~~~v~~~~~~~~~~~~~  319 (353)
                      +..+..+   +  ...+ +++ ..+.|.+|++.++.....+..-         .       .+.-......+...    +
T Consensus      1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~----~ 1316 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK----N 1316 (1431)
T ss_pred             cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC----C
Confidence            4433332   2  3444 444 5788999999987432211111         0       01111111222222    6


Q ss_pred             eEEEEccCCCeEEEEEcCCCCCc
Q 018591          320 FLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       320 ~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ..+++|+.|..|+.||...+...
T Consensus      1317 ~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceeeecCCccceeeccCCCcccc
Confidence            79999999999999998877644

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=9e-16  Score=118.67  Aligned_cols=252  Identities=19%  Similarity=0.266  Sum_probs=174.8

Q ss_pred             ceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccce----eEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591           56 DGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENV----FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA  128 (353)
Q Consensus        56 ~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (353)
                      ..++..+.|.   .+.+++|+.|..|++|.++......    +..+                           ..+..|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~---------------------------s~Ls~H~   65 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYL---------------------------SSLSRHT   65 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEe---------------------------ecccCCc
Confidence            4578888886   3489999999999999998765322    2222                           2233799


Q ss_pred             CceEEEEEeC--CeEEEecCCCcEEEEEcC--------C--------ceeeeeccccCcceEEEEEe--CCeEEEEcCCC
Q 018591          129 DSISCLTVYN--GLIYSGSWDKTLKVWRVA--------D--------LKCLESIKAHDDAVNGLVAS--KGIVYSASADG  188 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg  188 (353)
                      ..|+++.|+|  +.|++|+.+|.|.+|-..        +        ......+.+|...|..++|.  +..+++++.|.
T Consensus        66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn  145 (434)
T KOG1009|consen   66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN  145 (434)
T ss_pred             ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc
Confidence            9999999999  799999999999999765        2        22345567899999999993  34899999999


Q ss_pred             cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee------eecccccee
Q 018591          189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA------CETKAHEMA  262 (353)
Q Consensus       189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~  262 (353)
                      .+++||+..+.     +...+..|...+ ..++|.|-++++++-+.|...+.+++..........      .......+.
T Consensus       146 s~~l~Dv~~G~-----l~~~~~dh~~yv-qgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~  219 (434)
T KOG1009|consen  146 SVRLWDVHAGQ-----LLAILDDHEHYV-QGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK  219 (434)
T ss_pred             eEEEEEeccce-----eEeecccccccc-ceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence            99999999998     888888898887 999999999999999999877777765542211111      000111111


Q ss_pred             ---------------EEEEEEcCcEEEEecC---------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC---
Q 018591          263 ---------------VLCVCLVGEFLCSGSA---------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA---  315 (353)
Q Consensus       263 ---------------v~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---  315 (353)
                                     -.++.|+|.+|++...         -+..++|+-...++  +...+..-..+...+.|+|-.   
T Consensus       220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r--P~~~lp~~~k~~lavr~~pVy~el  297 (434)
T KOG1009|consen  220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR--PAARLPSPKKPALAVRFSPVYYEL  297 (434)
T ss_pred             eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC--ceeecCCCCcceEEEEeeeeEEEe
Confidence                           1455667777776432         23446666554443  344455555666666666520   


Q ss_pred             ----C-------CCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          316 ----V-------GGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       316 ----~-------~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                          .       .-+..++.++.| .|.+||.++..++.
T Consensus       298 rp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~  335 (434)
T KOG1009|consen  298 RPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLA  335 (434)
T ss_pred             ccccccccccccccceEEEEeecc-eEEEeccccccceE
Confidence                0       003456666655 79999988765543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=1.9e-17  Score=129.98  Aligned_cols=266  Identities=16%  Similarity=0.176  Sum_probs=194.4

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      .-+.+.+.  |++|+.|+.-|.|-.+|..++++...+.. ...|..+.|- ...+++......+.+||-..-+.   .++
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl---HCl  206 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL---HCL  206 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCcEE---eeh
Confidence            34556663  99999999999999999999999988876 4578888886 44455555667999999665431   111


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceE
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN  172 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  172 (353)
                                                     .....|..+.|.|  -+|++++..|.++--|+.+|+.+..+..-.+.+.
T Consensus       207 -------------------------------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~  255 (545)
T KOG1272|consen  207 -------------------------------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD  255 (545)
T ss_pred             -------------------------------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence                                           2335678899999  6777888899999999999999999987778888


Q ss_pred             EEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce
Q 018591          173 GLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW  250 (353)
Q Consensus       173 ~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  250 (353)
                      .+.-+|  ..+-+|...|+|.+|.....+     ++..+..|.+.+ .++++.++|+++++.+.|..++|||++.-.   
T Consensus       256 vm~qNP~NaVih~GhsnGtVSlWSP~ske-----PLvKiLcH~g~V-~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---  326 (545)
T KOG1272|consen  256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKE-----PLVKILCHRGPV-SSIAVDRGGRYMATTGLDRKVKIWDLRNFY---  326 (545)
T ss_pred             hhhcCCccceEEEcCCCceEEecCCCCcc-----hHHHHHhcCCCc-ceEEECCCCcEEeecccccceeEeeecccc---
Confidence            787743  377789999999999999887     677777888876 999999999999999999999999999863   


Q ss_pred             eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCC--CcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          251 KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                       ....... ......++++.+-+++.+....|.||.-.-......-..+-.|  .++|..+.|+|-    .+.|-.|-..
T Consensus       327 -ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~----EDvLGIGH~~  400 (545)
T KOG1272|consen  327 -QLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY----EDVLGIGHAG  400 (545)
T ss_pred             -ccceeec-CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH----HHeeeccccC
Confidence             2222222 3345566666666666667778999963221100011111112  358999999997    6666666655


Q ss_pred             CeEEE
Q 018591          329 KSLRV  333 (353)
Q Consensus       329 g~i~i  333 (353)
                      |.-.+
T Consensus       401 G~tsi  405 (545)
T KOG1272|consen  401 GITSI  405 (545)
T ss_pred             CceeE
Confidence            54333

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=7.8e-16  Score=123.28  Aligned_cols=197  Identities=18%  Similarity=0.255  Sum_probs=141.1

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeecc----ccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCc-----------
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIK----AHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKS-----------  200 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~-----------  200 (353)
                      --++.|-.-|.|.+.|....+..+.+.    -....|+++.|   .++.++++-.+|.+.+||......           
T Consensus       186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~  265 (636)
T KOG2394|consen  186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD  265 (636)
T ss_pred             cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence            356677777889998876533222221    12478999999   445888888999999997532110           


Q ss_pred             ------------ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE-
Q 018591          201 ------------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC-  267 (353)
Q Consensus       201 ------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-  267 (353)
                                  ....+...+...... |+..+|+|||++||+.+.||.++|||..+.    ++....+..-+..+|++ 
T Consensus       266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~-in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  266 GDQFAILTSKSKKTRNPVARWHIGEGS-INEFAFSPDGKYLATVSQDGFLRIFDFDTQ----ELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             CCeeEEeeeeccccCCccceeEecccc-ccceeEcCCCceEEEEecCceEEEeeccHH----HHHHHHHhhccceEEEEE
Confidence                        000112222222333 489999999999999999999999999987    44444444445555555 


Q ss_pred             -EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC-------------------------------
Q 018591          268 -LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA-------------------------------  315 (353)
Q Consensus       268 -~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------------------------  315 (353)
                       |||++|++|++|--|.||.+...+   .+..-++|.++|+.++|.|-.                               
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~  417 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTG  417 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCC
Confidence             569999999999999999999876   777789999999999999410                               


Q ss_pred             CC-------------CCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          316 VG-------------GGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       316 ~~-------------~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      ..             ...++.+.+.|-.+.+||+.......
T Consensus       418 S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  418 SAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             CcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence            00             12478899999999999998765444

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.73  E-value=1.2e-15  Score=114.55  Aligned_cols=207  Identities=15%  Similarity=0.119  Sum_probs=163.8

Q ss_pred             cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc---eeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCC
Q 018591          127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADL---KCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~  199 (353)
                      -..+|+|.+|++  ..++++..+..|.||.....   +...+++.|...|+.++|  ..+.|++++.|..-++|....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            457899999999  78999999999999987654   467889999999999999  34499999999999999984433


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEec
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGS  277 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  277 (353)
                        ...+...+..+.... +++.|+|.++.|++|+....|.+|-++.+..-+......+.+...|.+++|.  +-+|++|+
T Consensus        89 --~WkptlvLlRiNrAA-t~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   89 --TWKPTLVLLRINRAA-TCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             --eeccceeEEEeccce-eeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence              122333444455555 9999999999999999999999999988765555555566778889999886  56899999


Q ss_pred             CCCeEEEEecCCCc-----c----------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          278 ADKSIGIWKREAFG-----K----------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       278 ~dg~i~iw~~~~~~-----~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      .|+..|+|...-..     .          -..+.++....+.|..+.|+|.    |..|+-.+.|..+.+=|...+.
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s----G~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS----GNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC----CCEeeEecCCCceEEeecCCCc
Confidence            99999999742110     0          0123334455678999999999    9999999999999999887765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.71  E-value=2.2e-15  Score=114.23  Aligned_cols=248  Identities=16%  Similarity=0.229  Sum_probs=175.9

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe-CCCceeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ-QPDLRMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd-~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      ..+++.++||.+.|+....-  .+-+++.+.|.++|||- .+.++.-..+.+ -..+++++.+.  ...|+.|-.+|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            34567889999999988773  67899999999999995 455665555533 35678888887  56788888889988


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      -+.+...-..                            ....+.+..|...+..+-|+.  ..+++.+.|..+.---.+.
T Consensus        94 efs~sedfnk----------------------------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   94 EFALSEDFNK----------------------------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             EEEhhhhhhh----------------------------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence            8876543210                            112334447999999999987  8999999998775544454


Q ss_pred             ceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          158 LKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      +..+..+.. ...-+++.+.-.+.+.|...|.+..-.+....   ..+...+.+|...+ .+++|.|....+++|..|..
T Consensus       146 ~~~lg~Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~---~~~i~~~~~h~~~~-~~l~Wd~~~~~LfSg~~d~~  220 (404)
T KOG1409|consen  146 GNRLGGYNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNG---CQLITTFNGHTGEV-TCLKWDPGQRLLFSGASDHS  220 (404)
T ss_pred             CCcccceEe-eccCCCCceeeEEEEecccccceEEEEEeecC---CceEEEEcCcccce-EEEEEcCCCcEEEeccccCc
Confidence            444332211 11111222211155666667776665554332   23677888898887 99999999999999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~  289 (353)
                      +.+||+....   ....++.+|...+..+..-  -+.+++++.||.|.+|+++.
T Consensus       221 vi~wdigg~~---g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  221 VIMWDIGGRK---GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eEEEeccCCc---ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            9999998763   3455667788777777653  67899999999999999875

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=2.2e-16  Score=126.45  Aligned_cols=184  Identities=20%  Similarity=0.211  Sum_probs=141.0

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRI   78 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i   78 (353)
                      +.++.-+....|.++|.|-.|+  |.-|+|++.||.|++|. .+|.+..++.....+|+|++|.   .+.+++.+.  .+
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~  168 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--HI  168 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC--eE
Confidence            4566777888999999999996  88999999999999998 5777777777778899999997   445555543  45


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~  156 (353)
                      .+=.+....                                ..-.|..|.+-|.++.|++  +.+++|+.|-..++||. 
T Consensus       169 ~IKpL~~n~--------------------------------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-  215 (737)
T KOG1524|consen  169 SIKPLAANS--------------------------------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-  215 (737)
T ss_pred             EEeeccccc--------------------------------ceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-
Confidence            443333222                                2344668999999999999  99999999999999995 


Q ss_pred             CceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          157 DLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       157 ~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      .|..+..-..|..+|++++|+++.++..+.-.++|+=..+                 ...|..++||+||..++.|+..|
T Consensus       216 ~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~-----------------~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  216 QGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPR-----------------VGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             cCcccccCChhccceeeeeeccccceeeeeeeeeeecCCC-----------------ccceEEEEEcCCCceeeccccCc
Confidence            5777777788999999999966644443333455522222                 22358999999999999999999


Q ss_pred             cEEE
Q 018591          237 FVMG  240 (353)
Q Consensus       237 ~i~i  240 (353)
                      .+.+
T Consensus       279 ~v~~  282 (737)
T KOG1524|consen  279 QLIV  282 (737)
T ss_pred             eEEE
Confidence            7765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=5e-15  Score=124.91  Aligned_cols=229  Identities=12%  Similarity=0.071  Sum_probs=149.2

Q ss_pred             CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeecc
Q 018591           35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMK  109 (353)
Q Consensus        35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (353)
                      +..|.+||..... ...+..|...+....|+  ++.|+.++.+   ..|++||+.++...   .+..++           
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---~l~~~~-----------  247 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---VVASFR-----------  247 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---EEecCC-----------
Confidence            4689999986544 55666777889999998  7788877643   36999999876521   111111           


Q ss_pred             cceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEE--EcCCceeeeeccccCcceEEEEEeCC--eEE
Q 018591          110 QSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVW--RVADLKCLESIKAHDDAVNGLVASKG--IVY  182 (353)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~--~l~  182 (353)
                                      +|   .....|+|  +.|+.+ +.+|.+.+|  |+.+++ ...+..+...+....|+++  .++
T Consensus       248 ----------------g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~  307 (429)
T PRK01742        248 ----------------GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSIL  307 (429)
T ss_pred             ----------------Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEE
Confidence                            22   23578988  566655 467766555  665554 3445556667788899443  444


Q ss_pred             -EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591          183 -SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       183 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                       ++..+|...+|++.....    ....+ .+..   ....|+|+|++++..+.++ +.+||+.++....  .  ......
T Consensus       308 f~s~~~g~~~I~~~~~~~~----~~~~l-~~~~---~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~--l--t~~~~~  374 (429)
T PRK01742        308 FTSDRSGSPQVYRMSASGG----GASLV-GGRG---YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV--L--SSTFLD  374 (429)
T ss_pred             EEECCCCCceEEEEECCCC----CeEEe-cCCC---CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE--e--cCCCCC
Confidence             445678888888754321    11122 2222   3467999999998887765 6669988763221  1  111222


Q ss_pred             eEEEEEEcCcEEEEecCCCeEEEEecC--CCcceEEeccccCCCcCeEEEEeecC
Q 018591          262 AVLCVCLVGEFLCSGSADKSIGIWKRE--AFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ....++++|++|+.++.++...+|.+.  +++   ....+.+|.+.+...+|+|-
T Consensus       375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~---~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGR---FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCceECCCCCEEEEEEcCCCceEEEEEECCCC---ceEEccCCCCCCCCcccCCC
Confidence            335678889999999999988888763  344   45556778888999999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=5.6e-14  Score=105.64  Aligned_cols=181  Identities=15%  Similarity=0.219  Sum_probs=132.5

Q ss_pred             CcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--C
Q 018591          148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--D  225 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~  225 (353)
                      +.|.|||-...+++.++. ...+|.++.+..+.+++.- ++.|++|...+.-    .....+.....+. --++..|  +
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~----k~l~~~et~~NPk-GlC~~~~~~~  147 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNP----KLLHVIETRSNPK-GLCSLCPTSN  147 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCCh----hheeeeecccCCC-ceEeecCCCC
Confidence            579999977777888875 4789999999888877765 4789999988443    1333333332221 2233444  3


Q ss_pred             CCeEEe-ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCe-EEEEecCCCcceEEeccccC
Q 018591          226 GKWVYG-GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKS-IGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       226 ~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~  301 (353)
                      ..+|+. |-.-|.|++-|+......  .......|...|.|++.+  |.++|+++..|+ |||||..+++.+.+++.-. 
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-  224 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-  224 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-
Confidence            334443 556799999999876321  345678899999888885  999999999987 7999999999555443322 


Q ss_pred             CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ....|.+++|||+    ..+|+++|+-|+++|+.+......
T Consensus       225 d~A~iy~iaFSp~----~s~LavsSdKgTlHiF~l~~~~~~  261 (346)
T KOG2111|consen  225 DRADIYCIAFSPN----SSWLAVSSDKGTLHIFSLRDTENT  261 (346)
T ss_pred             chheEEEEEeCCC----ccEEEEEcCCCeEEEEEeecCCCC
Confidence            2356999999999    999999999999999999875533

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=1.2e-16  Score=125.51  Aligned_cols=195  Identities=12%  Similarity=0.165  Sum_probs=158.8

Q ss_pred             EEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591          133 CLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       133 ~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  209 (353)
                      .+.+..  .+++.|+.-|.|..+|..+++....+.. ...|.++.| .+..+++......+++||-...+      +..+
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE------lHCl  206 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE------LHCL  206 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCcE------Eeeh
Confidence            455554  7899999999999999999998888754 567889999 55566666778899999976554      4444


Q ss_pred             eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEec
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~  287 (353)
                      ..+..  +..+.|-|..-+|++++..|.++.-|+..+    +++..+....+.+  ++-.|-+..+-+|..+|+|.+|..
T Consensus       207 k~~~~--v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  207 KRHIR--VARLEFLPYHFLLVAASEAGFLKYQDVSTG----KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             hhcCc--hhhhcccchhheeeecccCCceEEEeechh----hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence            44443  588999999989999999999999999998    5555555444444  444455778899999999999999


Q ss_pred             CCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          288 EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       288 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      ...+   ++..+..|.++|.++++.++    |.|++|++.|..++|||+.....+.+...
T Consensus       281 ~ske---PLvKiLcH~g~V~siAv~~~----G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  281 NSKE---PLVKILCHRGPVSSIAVDRG----GRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             CCcc---hHHHHHhcCCCcceEEECCC----CcEEeecccccceeEeeeccccccceeec
Confidence            8877   77788889999999999999    99999999999999999998887766554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.68  E-value=2e-13  Score=113.94  Aligned_cols=281  Identities=14%  Similarity=0.128  Sum_probs=156.5

Q ss_pred             CCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591            5 SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~   84 (353)
                      +|+.+..++-........+.+++.++.++.||.+..+|..+|+.+................++.++.++.+|.+..||.+
T Consensus        84 tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~  163 (377)
T TIGR03300        84 TGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAA  163 (377)
T ss_pred             CCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcC
Confidence            44444433332222223334455666666667777777666666655443222111122235556666666667777766


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      +++...     ..+....                  .......    .+.....+.++.+..++.+..+|.++++.+.+.
T Consensus       164 tG~~~W-----~~~~~~~------------------~~~~~~~----~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       164 TGERLW-----TYSRVTP------------------ALTLRGS----ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CCceee-----EEccCCC------------------ceeecCC----CCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            554110     0000000                  0000000    011122357788888999999999998876554


Q ss_pred             cccCc----c------e-EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591          165 KAHDD----A------V-NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       165 ~~~~~----~------v-~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                      .....    .      + ....+.++.++.++.+|.+..||.++++     ..-....  ... ....  ..+..+++++
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-----~~W~~~~--~~~-~~p~--~~~~~vyv~~  286 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-----VLWKRDA--SSY-QGPA--VDDNRLYVTD  286 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-----EEEeecc--CCc-cCce--EeCCEEEEEC
Confidence            21100    0      1 1122356788888999999999999887     2222221  111 2222  2456788888


Q ss_pred             CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE-EEEee
Q 018591          234 SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK-CLQAS  312 (353)
Q Consensus       234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~~  312 (353)
                      .+|.+..+|..+++..++... +..  .........+..+++++.+|.|+++|..+++   .+..++.+...+. +..+.
T Consensus       287 ~~G~l~~~d~~tG~~~W~~~~-~~~--~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~---~~~~~~~~~~~~~~sp~~~  360 (377)
T TIGR03300       287 ADGVVVALDRRSGSELWKNDE-LKY--RQLTAPAVVGGYLVVGDFEGYLHWLSREDGS---FVARLKTDGSGIASPPVVV  360 (377)
T ss_pred             CCCeEEEEECCCCcEEEcccc-ccC--CccccCEEECCEEEEEeCCCEEEEEECCCCC---EEEEEEcCCCccccCCEEE
Confidence            999999999988855544311 111  1112222357789999999999999999988   4444444443332 22233


Q ss_pred             cCCCCCCeEEEEccCCCeEEEE
Q 018591          313 PNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       313 ~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                            +..|+.++.||.|..+
T Consensus       361 ------~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       361 ------GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             ------CCEEEEEeCCceEEEe
Confidence                  3458888899998776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.67  E-value=2.8e-14  Score=108.38  Aligned_cols=272  Identities=14%  Similarity=0.229  Sum_probs=160.0

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----eeEEeccC------------ceeeEEEEEe----CCEEEEe
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-----MFTKFGHG------------DGSVKAVVTV----GNKVFTA   72 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~----~~~l~s~   72 (353)
                      .+-|.+|.|+  |++||+|..+|.|.++.-+...     ....+..|            ...|..+.|.    ...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4678899996  9999999999999999743221     23334344            3467777775    4567777


Q ss_pred             cCCCcEEEEEcccCcccee--EEeeccccccc--eeeeecccceeEeecccceeee-eecCCceEEEEEeC-CeEEEecC
Q 018591           73 HQDSRIRVWKVSRSSENVF--RLVDTLPTTKD--YLGKFMKQSNYVQTRRHHKRLW-IEHADSISCLTVYN-GLIYSGSW  146 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~~l~~~~~  146 (353)
                      +.|.+|++|.+.......-  ......+....  .......+.... ....+.+++ ..|.--|+++.++. ...+..+.
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~-vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE-VEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce-eeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            8899999999876543220  00000000000  000001111111 111222333 37888999999998 44444556


Q ss_pred             CCcEEEEEcCCce-e--eeecccc-----CcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC--
Q 018591          147 DKTLKVWRVADLK-C--LESIKAH-----DDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK--  213 (353)
Q Consensus       147 dg~v~iwd~~~~~-~--~~~~~~~-----~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--  213 (353)
                      |=.|.+|+++--. .  +-.++.+     ..-|++..|+|   +.++-.+..|+|++-|++.... +......+....  
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL-Cd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL-CDAHSKLFEEPEDP  262 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh-hcchhhhhccccCC
Confidence            7889999986321 1  2222222     34567777744   4888889999999999985431 000011111111  


Q ss_pred             ---------CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc---------cee---EEEEEEc--C
Q 018591          214 ---------DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH---------EMA---VLCVCLV--G  270 (353)
Q Consensus       214 ---------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~---v~~~~~~--~  270 (353)
                               -..|..+.|+++|+++++-+. -+|++||+................         ...   -..++++  +
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                     112478999999999988653 479999997653222211111100         111   1344555  4


Q ss_pred             cEEEEecCCCeEEEEecCCC
Q 018591          271 EFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .++++|+..+..++|+...+
T Consensus       342 ~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             ceEecccccceEEEecCCCC
Confidence            59999999999999996554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.67  E-value=1.3e-14  Score=124.98  Aligned_cols=271  Identities=18%  Similarity=0.270  Sum_probs=187.9

Q ss_pred             ccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEe------ccCceeeEE-EEEeCCEEEEecCCCcEEEEEcccCc
Q 018591           15 HVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKF------GHGDGSVKA-VVTVGNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~------~~~~~~v~~-~~~~~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      |-+++++.++-.++|.+|.. -.|.+||+.++..+..+      +.|  .+.. +...+.+++++..-+.+..=+.....
T Consensus         6 ~~~~l~~~~~~~~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~   82 (967)
T KOG0974|consen    6 SLGPLNLPQLVSDYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQI   82 (967)
T ss_pred             ccccccchhhccceeeecCC-CceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhh
Confidence            34566666664477776654 47999999888765443      333  0000 11114555665554444433322211


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCce--EEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI--SCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK  165 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  165 (353)
                      .      .                              .-...|  ..+.+....++.+..++.+.+||...+.....+.
T Consensus        83 ~------~------------------------------~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~  126 (967)
T KOG0974|consen   83 I------E------------------------------RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ  126 (967)
T ss_pred             h------h------------------------------hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcC
Confidence            0      0                              011111  2233334788888889999999998777766664


Q ss_pred             ccCcc-eEEE-EE--eCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          166 AHDDA-VNGL-VA--SKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       166 ~~~~~-v~~i-~~--~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      ..... ..+. -+  +.+  ++++|+.-+.|.+|+....+     ....+.+|.+.+ .++.++.||+++++.+.|..++
T Consensus       127 ~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-----~p~~l~GHeG~i-F~i~~s~dg~~i~s~SdDRsiR  200 (967)
T KOG0974|consen  127 SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-----KPIRLKGHEGSI-FSIVTSLDGRYIASVSDDRSIR  200 (967)
T ss_pred             CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-----CcceecccCCce-EEEEEccCCcEEEEEecCccee
Confidence            43221 1122 22  233  88999999999999998444     233688999987 9999999999999999999999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCc-CeEEEEeecCCCCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG-PVKCLQASPNAVGG  318 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~  318 (353)
                      +|++.+...   ......+|...+..+.+..+.+++++.|.+.++|+.+. .   .+..+.+|.+ .|..++..++    
T Consensus       201 lW~i~s~~~---~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~---~l~~y~~h~g~~iw~~~~~~~----  269 (967)
T KOG0974|consen  201 LWPIDSREV---LGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-T---QLEVYDEHSGKGIWKIAVPIG----  269 (967)
T ss_pred             eeecccccc---cCcccccccceeEEEEeccceeEEeccceEEEEEeccc-c---eehhhhhhhhcceeEEEEcCC----
Confidence            999998742   22467789999999888877999999999999997654 3   3446777754 6999999998    


Q ss_pred             CeEEEEccCCCeEEEEEcCCCCC
Q 018591          319 GFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       319 ~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ...++|++.||.+++|++.....
T Consensus       270 ~~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  270 VIIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             ceEEEeeccCcchhhhhhhcccc
Confidence            88999999999999999876543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=4.8e-15  Score=115.32  Aligned_cols=190  Identities=14%  Similarity=0.155  Sum_probs=134.2

Q ss_pred             EEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591           20 SSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVD   95 (353)
Q Consensus        20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~   95 (353)
                      .+++|+  |..|++|+.||++|||++++...+.....|.+.|.++.|+  +..|++.+.| ..+||+.+++.     .+.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~-----~~a  221 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA-----ALA  221 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc-----hhh
Confidence            567775  8899999999999999999999888888899999999998  7899999999 99999999884     222


Q ss_pred             ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-C-----eEE-EecCCCcEEEEEcCCcee-----eee
Q 018591           96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-G-----LIY-SGSWDKTLKVWRVADLKC-----LES  163 (353)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-----~l~-~~~~dg~v~iwd~~~~~~-----~~~  163 (353)
                      .....                         +-......+.|.. +     +++ ....-+.|+.||+...+.     ..+
T Consensus       222 ~~t~~-------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~  276 (398)
T KOG0771|consen  222 RKTPF-------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK  276 (398)
T ss_pred             hcCCc-------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence            11100                         1111222333332 1     222 223334566665533211     111


Q ss_pred             ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEe
Q 018591          164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW  241 (353)
Q Consensus       164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  241 (353)
                      .-.-...|.+++.  ++.+++.|+.||.|.+++..+.+    ......+.|.. .|+.+.|+|+.+++++.+.+....+.
T Consensus       277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq----~~~~vk~aH~~-~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ----RLQYVKEAHLG-FVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee----eeEeehhhhee-eeeeEEEcCCcCcccccccCCceeEE
Confidence            1222457899999  34489999999999999998876    23344455666 55999999999999999999988888


Q ss_pred             eccc
Q 018591          242 EGNV  245 (353)
Q Consensus       242 d~~~  245 (353)
                      .+..
T Consensus       352 ~l~v  355 (398)
T KOG0771|consen  352 KLAV  355 (398)
T ss_pred             EEee
Confidence            7765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.66  E-value=4.8e-13  Score=111.63  Aligned_cols=279  Identities=17%  Similarity=0.133  Sum_probs=177.1

Q ss_pred             EEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591           21 SLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT  100 (353)
Q Consensus        21 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  100 (353)
                      .....++.++.++.+|.|..+|..+|+.+..+.............++.++.++.+|.+..+|.++++...     .... 
T Consensus        60 ~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W-----~~~~-  133 (377)
T TIGR03300        60 QPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELW-----RAKL-  133 (377)
T ss_pred             ceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEee-----eecc-
Confidence            3345578899999999999999999999887765443333445568889999999999999998876211     1100 


Q ss_pred             cceeeeecccceeEeecccceeeeeecCCceE-EEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcce-----EEE
Q 018591          101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV-----NGL  174 (353)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~i  174 (353)
                                                 ...+. ......+.++.++.+|.++.||.++++.+.+++......     .+.
T Consensus       134 ---------------------------~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp  186 (377)
T TIGR03300       134 ---------------------------SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASP  186 (377)
T ss_pred             ---------------------------CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCC
Confidence                                       01111 111233677888889999999999999887765432211     112


Q ss_pred             EEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-eeeEEEEcC--CCCeEEeecCCCcEEEeecccccccee
Q 018591          175 VASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-SLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWK  251 (353)
Q Consensus       175 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~  251 (353)
                      ...++.++.+..++.+..+|.++++...........+.... ....+.-+|  .+..+++++.+|.+..||..+++..+.
T Consensus       187 ~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~  266 (377)
T TIGR03300       187 VIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK  266 (377)
T ss_pred             EEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence            23456788888899999999988872211100000000000 000000111  245788888899999999998865554


Q ss_pred             eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                      ..  ..    ........+..+++++.+|.++.+|..+++.......+..  ....+...  .    +..|++++.||.|
T Consensus       267 ~~--~~----~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i--~----g~~l~~~~~~G~l  332 (377)
T TIGR03300       267 RD--AS----SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPAV--V----GGYLVVGDFEGYL  332 (377)
T ss_pred             ec--cC----CccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCEE--E----CCEEEEEeCCCEE
Confidence            32  11    1223334677888889999999999998874332222211  11222222  2    5688899999999


Q ss_pred             EEEEcCCCCCccccc
Q 018591          332 RVWWVSKQSSTSDSE  346 (353)
Q Consensus       332 ~iw~~~~~~~~~~~~  346 (353)
                      .++|..+++.+...+
T Consensus       333 ~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       333 HWLSREDGSFVARLK  347 (377)
T ss_pred             EEEECCCCCEEEEEE
Confidence            999999998876554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1e-12  Score=99.00  Aligned_cols=232  Identities=12%  Similarity=0.175  Sum_probs=151.8

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce--eeEEEEEeCCEEEEec-CC------CcEEEEEcccC
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG--SVKAVVTVGNKVFTAH-QD------SRIRVWKVSRS   86 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~s~~-~d------g~i~~w~~~~~   86 (353)
                      ...+++|+  ..-++.|..+ -.+||+.+..+.......+.+  .+..+-|-.++|+-.+ .+      ..+.|||=...
T Consensus         7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            34558886  4456656554 589999876444333322222  3333444466665443 22      47999992222


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcC-Cceeeeecc
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVA-DLKCLESIK  165 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~  165 (353)
                      .     ++.++                            ....+|.++.+.++.+++.-. +.|++|... +.+.+..+.
T Consensus        86 ~-----~i~el----------------------------~f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e  131 (346)
T KOG2111|consen   86 R-----CIIEL----------------------------SFNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE  131 (346)
T ss_pred             c-----EEEEE----------------------------EeccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee
Confidence            2     22222                            467789999999987777764 779999987 455555553


Q ss_pred             cc--CcceEEEEE-eCC-eEE-EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc-EE
Q 018591          166 AH--DDAVNGLVA-SKG-IVY-SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF-VM  239 (353)
Q Consensus       166 ~~--~~~v~~i~~-~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~  239 (353)
                      ..  ...+.+++- .+. .|+ -|-.-|.|.+-|+...+..   ......+|...+ .+++.+.+|..+|+++..|+ |+
T Consensus       132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~---~p~~I~AH~s~I-acv~Ln~~Gt~vATaStkGTLIR  207 (346)
T KOG2111|consen  132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN---APSIINAHDSDI-ACVALNLQGTLVATASTKGTLIR  207 (346)
T ss_pred             cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC---CceEEEcccCce-eEEEEcCCccEEEEeccCcEEEE
Confidence            22  233444443 222 333 3445689999999877621   246778888876 99999999999999999996 79


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      |||..++....++..-.  ....+.++++  +..+|++++..|+++||.++..
T Consensus       208 IFdt~~g~~l~E~RRG~--d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  208 IFDTEDGTLLQELRRGV--DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEcCCCcEeeeeecCC--chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999995444333222  2344555555  5889999999999999998763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=2e-14  Score=115.36  Aligned_cols=133  Identities=18%  Similarity=0.283  Sum_probs=106.3

Q ss_pred             cCCceEEEEEeC---CeEEEecCCCcEEEEEcCCc--------------e--------------eeeeccccCcceEEEE
Q 018591          127 HADSISCLTVYN---GLIYSGSWDKTLKVWRVADL--------------K--------------CLESIKAHDDAVNGLV  175 (353)
Q Consensus       127 ~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~--------------~--------------~~~~~~~~~~~v~~i~  175 (353)
                      .+..++|+.|-+   ..++++-.+|.+++||..-.              .              ++..+..-.+.|+.++
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            347899999988   78888999999999976310              0              1111112345777888


Q ss_pred             EeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee
Q 018591          176 ASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA  253 (353)
Q Consensus       176 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  253 (353)
                      |+++  +|++.+.||.+||||..+.+     +...++...+.. .|++|||||++|++|++|..|.+|.+...    +.+
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYFGGL-LCvcWSPDGKyIvtGGEDDLVtVwSf~er----RVV  367 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYFGGL-LCVCWSPDGKYIVTGGEDDLVTVWSFEER----RVV  367 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhccce-EEEEEcCCccEEEecCCcceEEEEEeccc----eEE
Confidence            8333  99999999999999999887     666666666666 99999999999999999999999999887    777


Q ss_pred             eeccccceeEEEEEEc
Q 018591          254 CETKAHEMAVLCVCLV  269 (353)
Q Consensus       254 ~~~~~~~~~v~~~~~~  269 (353)
                      ..-.+|..+|..++||
T Consensus       368 ARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  368 ARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EeccccccceeeEeec
Confidence            7888899998888877

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=1.3e-12  Score=106.91  Aligned_cols=276  Identities=12%  Similarity=0.143  Sum_probs=165.4

Q ss_pred             CcEE-EEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           26 GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        26 ~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      ++++ ++-..+|.|.+.|..+.+.+..+......-..+.++  ++++++++.||.|.++|+.+.+     .+..++    
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-----~v~~i~----   75 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-----VVATIK----   75 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-----EEEEEE----
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-----EEEEEe----
Confidence            3445 455678999999999999999998654443445565  7899999999999999999887     443332    


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeecccc-------CcceE
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKAH-------DDAVN  172 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~  172 (353)
                                              -.....++++++  ++++++ ..++.+.++|.++.+.++.+...       ...+.
T Consensus        76 ------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~  131 (369)
T PF02239_consen   76 ------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA  131 (369)
T ss_dssp             -------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred             ------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence                                    223456788877  666655 57899999999999998887532       23556


Q ss_pred             EEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeecccccc
Q 018591          173 GLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIV  248 (353)
Q Consensus       173 ~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~  248 (353)
                      ++..+ .+  ++++.-..+.|.+.|..+.+.    +..........+ ....|+|++++++++ ..+..|-++|.++...
T Consensus       132 aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~----~~~~~i~~g~~~-~D~~~dpdgry~~va~~~sn~i~viD~~~~k~  206 (369)
T PF02239_consen  132 AIVASPGRPEFVVNLKDTGEIWVVDYSDPKN----LKVTTIKVGRFP-HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL  206 (369)
T ss_dssp             EEEE-SSSSEEEEEETTTTEEEEEETTTSSC----EEEEEEE--TTE-EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred             eEEecCCCCEEEEEEccCCeEEEEEeccccc----cceeeecccccc-cccccCcccceeeecccccceeEEEeeccceE
Confidence            66652 22  445555568888888776641    222222222333 789999999987664 4566777777766422


Q ss_pred             ceee---------------------------------------------------eeeccccce-eEEEEEEcCcEEEEe
Q 018591          249 RWKL---------------------------------------------------ACETKAHEM-AVLCVCLVGEFLCSG  276 (353)
Q Consensus       249 ~~~~---------------------------------------------------~~~~~~~~~-~v~~~~~~~~~l~~~  276 (353)
                      ....                                                   ...+..... --...+|+++++.+.
T Consensus       207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd  286 (369)
T PF02239_consen  207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD  286 (369)
T ss_dssp             EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred             EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence            1110                                                   000000000 112334556777776


Q ss_pred             ----cCCCeEEEEecCCCcceEEeccccCC-CcCeEEEEeecCCCCCCeEEEEccC--CCeEEEEEcCCCCCccccc
Q 018591          277 ----SADKSIGIWKREAFGKLCRVGAITGH-EGPVKCLQASPNAVGGGFLLYSGSL--DKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       277 ----~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~  346 (353)
                          ...+.|.++|.++.+   .+..+... ...+..+.|+++    |+.+..+..  ++.|.+||..+.+.+....
T Consensus       287 ~~~~~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~d----G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  287 TFLNPDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPD----GKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -TT-SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TT----SSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCC----CCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence                456889999999876   33333211 234899999999    775555443  3479999999988877655

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1e-12  Score=100.73  Aligned_cols=290  Identities=12%  Similarity=0.108  Sum_probs=173.6

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEe---CCEEEEecCCCcEEEEEcccCcccee
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      .+..++|+  -..+|++..|-.|++||-.+ +....++. ....|++++|.   +..|+.|+.. -|.+|..+.......
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence            56677887  34578888999999999766 44444433 35689999997   6678888774 689998765421000


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCCceeeeeccccC
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVADLKCLESIKAHD  168 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~  168 (353)
                       .+......                 ........+| .+|++|.|++  ..+++++ .|..|.+||..++..+.......
T Consensus       178 -~~~~~s~~-----------------~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl  238 (445)
T KOG2139|consen  178 -NIRMMSTH-----------------HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL  238 (445)
T ss_pred             -cccccccc-----------------chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence             00000000                 0000111145 6899999999  5666665 46789999999988776654456


Q ss_pred             cceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          169 DAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       169 ~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      +.+.-+.|+|+  .++++.-|+..++|+....-     .........+. |...+|+|+|++|..... |.-++|.+.-.
T Consensus       239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-----t~erw~lgsgr-vqtacWspcGsfLLf~~s-gsp~lysl~f~  311 (445)
T KOG2139|consen  239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-----TKERWILGSGR-VQTACWSPCGSFLLFACS-GSPRLYSLTFD  311 (445)
T ss_pred             CceeeEEEcCCCCEEEEecccceeeeehhcccc-----eecceeccCCc-eeeeeecCCCCEEEEEEc-CCceEEEEeec
Confidence            78888999444  89999999999999654432     12222222333 599999999987654432 22344443221


Q ss_pred             c--cce---------eeeeecc------c---cceeEEEEEE--cCcEEEEecCCCe--------EEEEecCCCcceEEe
Q 018591          247 I--VRW---------KLACETK------A---HEMAVLCVCL--VGEFLCSGSADKS--------IGIWKREAFGKLCRV  296 (353)
Q Consensus       247 ~--~~~---------~~~~~~~------~---~~~~v~~~~~--~~~~l~~~~~dg~--------i~iw~~~~~~~~~~~  296 (353)
                      .  ...         .++..+.      +   -.+...++++  +|.+||+....+.        |.+||.+..-.....
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels  391 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS  391 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE
Confidence            1  000         1111111      0   0233445555  5999998766543        667777653322221


Q ss_pred             c-cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          297 G-AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       297 ~-~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      . -+.+- .....+.|+|..+ ++.+|..+=..|.+.-|++.
T Consensus       392 ~cg~i~g-e~P~~IsF~pl~n-~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  392 YCGMIGG-EYPAYISFGPLKN-EGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ecccccC-CCCceEEeeeccc-CCcEEEEEeccCceEeeeeE
Confidence            0 11111 1255677887653 37777777777888887764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=6.4e-14  Score=108.15  Aligned_cols=207  Identities=14%  Similarity=0.216  Sum_probs=151.8

Q ss_pred             eeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCce----eeEEeccCceeeEEEEEe---CCEEEEecCC--CcEEEE
Q 018591           11 VLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLR----MFTKFGHGDGSVKAVVTV---GNKVFTAHQD--SRIRVW   81 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~---~~~l~s~~~d--g~i~~w   81 (353)
                      +..+.+++|..++.....|++|-.+|.+.+|..+.+.    .+..+..+ ..+..+.-.   ...+++|+..  ..+++|
T Consensus       100 ~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW  178 (412)
T ss_pred             ccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence            3445567777777777788889999999999987443    22233332 344444443   5678889998  899999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~  157 (353)
                      |+++.. ..+ .....+....  .                   ..-.-.++++.|.+    ..|++++.-+.+++||.+.
T Consensus       179 dle~~~-qiw-~aKNvpnD~L--~-------------------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~  235 (412)
T KOG3881|consen  179 DLEQSK-QIW-SAKNVPNDRL--G-------------------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH  235 (412)
T ss_pred             ecccce-eee-eccCCCCccc--c-------------------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence            998763 111 1111111100  0                   01222455677765    6899999999999999975


Q ss_pred             -ceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeec
Q 018591          158 -LKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       158 -~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                       .+++..+..-..+++++..  +.+.+++|...|.+..||++.++     .... +.+..+.+ +++..+|...++++++
T Consensus       236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-----l~g~~~kg~tGsi-rsih~hp~~~~las~G  309 (412)
T KOG3881|consen  236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-----LLGCGLKGITGSI-RSIHCHPTHPVLASCG  309 (412)
T ss_pred             cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce-----eeccccCCccCCc-ceEEEcCCCceEEeec
Confidence             4577888777889999988  55599999999999999999987     4444 77777776 9999999999999999


Q ss_pred             CCCcEEEeeccccc
Q 018591          234 SDGFVMGWEGNVEI  247 (353)
Q Consensus       234 ~dg~i~i~d~~~~~  247 (353)
                      -|..++|+|+++..
T Consensus       310 LDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  310 LDRYVRIHDIKTRK  323 (412)
T ss_pred             cceeEEEeecccch
Confidence            99999999999863

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=6.1e-13  Score=107.95  Aligned_cols=275  Identities=12%  Similarity=0.175  Sum_probs=182.6

Q ss_pred             CccCceEEEEEC--CcE-EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeC--CEEEEecCCCcEEEEEcccCcc
Q 018591           14 GHVGSVSSLALC--GEF-ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVG--NKVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      +|...-+.|..+  |+| +|||..--.|++||+....+...-......|.-...+.  ..++.-..|.+|.+-..-... 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h-  127 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH-  127 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee-
Confidence            366777788775  765 56777788999999876544322222233344333332  234444455565443221100 


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                        +..                                .-...-..++++.  --|+.++....|+-++++.|..+..+..
T Consensus       128 --y~~--------------------------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~  173 (703)
T KOG2321|consen  128 --YRT--------------------------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET  173 (703)
T ss_pred             --eee--------------------------------ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence              000                                0111223455554  2344444456799999999999999988


Q ss_pred             cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec----------cCCceeeEEEEcCCCCeEEeecC
Q 018591          167 HDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG----------HKDVSLNSVVVSDDGKWVYGGGS  234 (353)
Q Consensus       167 ~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~  234 (353)
                      ..+.++++..  ..+++++|+.+|.|-.||.++..     ....+..          .....|+++.|+.+|-.+++|..
T Consensus       174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-----rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts  248 (703)
T KOG2321|consen  174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-----RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS  248 (703)
T ss_pred             ccccceeeeecCccceEEecccCceEEEecchhhh-----hheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence            8899999998  34588888889999999999876     2222211          12233699999999999999999


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEEc----CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~  310 (353)
                      +|.+.|||++...+   +...-.+...++..+.|.    ++.+++ .....++|||-.+++.   ...+. .+..++.++
T Consensus       249 ~G~v~iyDLRa~~p---l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~---~asiE-pt~~lND~C  320 (703)
T KOG2321|consen  249 TGSVLIYDLRASKP---LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKP---MASIE-PTSDLNDFC  320 (703)
T ss_pred             CCcEEEEEcccCCc---eeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCc---eeecc-ccCCcCcee
Confidence            99999999998742   223334456678888874    334444 4567899999999884   33333 344599999


Q ss_pred             eecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +-|+    +-+++++-+++.+..|=+..-.
T Consensus       321 ~~p~----sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  321 FVPG----SGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             eecC----CceEEEecCCCcceeEEccccC
Confidence            9999    8899999999988888776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.61  E-value=2.9e-12  Score=105.00  Aligned_cols=233  Identities=12%  Similarity=0.167  Sum_probs=139.1

Q ss_pred             EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cC
Q 018591           70 FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SW  146 (353)
Q Consensus        70 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~  146 (353)
                      ++...++.|.+|++.+..  ....+..+                            .+.+....+.++|  ++|+++ ..
T Consensus         6 ~~~~~~~~I~~~~~~~~g--~l~~~~~~----------------------------~~~~~~~~l~~spd~~~lyv~~~~   55 (330)
T PRK11028          6 IASPESQQIHVWNLNHEG--ALTLLQVV----------------------------DVPGQVQPMVISPDKRHLYVGVRP   55 (330)
T ss_pred             EEcCCCCCEEEEEECCCC--ceeeeeEE----------------------------ecCCCCccEEECCCCCEEEEEECC
Confidence            344778999999996432  11222222                            2234456778887  566555 45


Q ss_pred             CCcEEEEEcCC-cee--eeeccccCcceEEEEEeC-C-eEEEEc-CCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591          147 DKTLKVWRVAD-LKC--LESIKAHDDAVNGLVASK-G-IVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       147 dg~v~iwd~~~-~~~--~~~~~~~~~~v~~i~~~~-~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      ++.|.+|+++. ++.  +.... .......+++++ + .+++++ .++.|.+|++.+... .........+. ..+ ..+
T Consensus        56 ~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~~-~~~-~~~  131 (330)
T PRK11028         56 EFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-PVAPIQIIEGL-EGC-HSA  131 (330)
T ss_pred             CCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-CCCceeeccCC-Ccc-cEe
Confidence            88999999863 332  22222 233456788843 3 555554 488999999974321 00112222222 223 778


Q ss_pred             EEcCCCCeEEe-ecCCCcEEEeeccccccce----eeeeeccccceeEEEEEEcCcEEEEecC-CCeEEEEecCCC-cce
Q 018591          221 VVSDDGKWVYG-GGSDGFVMGWEGNVEIVRW----KLACETKAHEMAVLCVCLVGEFLCSGSA-DKSIGIWKREAF-GKL  293 (353)
Q Consensus       221 ~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~-dg~i~iw~~~~~-~~~  293 (353)
                      +++|+++++++ ...++.|.+||+.......    .......+....-..+.+++++++++.. ++.|.+|+++.. ...
T Consensus       132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            89999988865 4556999999997632110    0001111222233566778888887765 999999999742 122


Q ss_pred             EEeccccCC------CcCeEEEEeecCCCCCCeEEEEccC-CCeEEEEEcCCCC
Q 018591          294 CRVGAITGH------EGPVKCLQASPNAVGGGFLLYSGSL-DKSLRVWWVSKQS  340 (353)
Q Consensus       294 ~~~~~~~~h------~~~v~~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~  340 (353)
                      ..+..+..+      ......+.++|+    +++|+++.. ++.|.+|++.+..
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pd----g~~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPD----GRHLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCC----CCEEEEecCCCCeEEEEEEeCCC
Confidence            233332211      123346889999    888888854 7899999996543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.5e-13  Score=113.77  Aligned_cols=195  Identities=14%  Similarity=0.041  Sum_probs=124.6

Q ss_pred             ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCcee--eeeccccCcceEEEEEeCC--eEEEE-cCCCcEEEE--
Q 018591          126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKC--LESIKAHDDAVNGLVASKG--IVYSA-SADGKIKAW--  193 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~--~l~~~-~~dg~i~iw--  193 (353)
                      .|...+....|+|  +.|+..+.+   ..|++||+.+++.  +..+.++   ....+|+++  .|+.+ +.+|.+.+|  
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEE
Confidence            5677899999999  677766543   4699999987753  3334333   346788433  56554 467876655  


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      |+.++.      ...+..+... +....|+|||+.++.. ..+|...+|++..........    .+......++++|++
T Consensus       278 d~~~~~------~~~lt~~~~~-~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~~~~~~SpDG~~  346 (429)
T PRK01742        278 GANGGT------PSQLTSGAGN-NTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRGYSAQISADGKT  346 (429)
T ss_pred             ECCCCC------eEeeccCCCC-cCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCCCCccCCCCCCE
Confidence            555544      2333444433 3789999999976654 467888888875432211221    111123456778999


Q ss_pred             EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC--CCCCccc
Q 018591          273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS--KQSSTSD  344 (353)
Q Consensus       273 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~--~~~~~~~  344 (353)
                      |+..+.++ +.+||+.+++.. .+.  ..+  ...++.|+|+    |++|+.++.+|.+.+|.+.  +++....
T Consensus       347 ia~~~~~~-i~~~Dl~~g~~~-~lt--~~~--~~~~~~~sPd----G~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        347 LVMINGDN-VVKQDLTSGSTE-VLS--STF--LDESPSISPN----GIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             EEEEcCCC-EEEEECCCCCeE-Eec--CCC--CCCCceECCC----CCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            98887765 556999887532 111  112  2356789999    9999999999988888763  3444433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=8e-12  Score=105.36  Aligned_cols=228  Identities=12%  Similarity=0.038  Sum_probs=139.5

Q ss_pred             cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec---CCCcEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591           37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH---QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS  111 (353)
Q Consensus        37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (353)
                      .|.+||....... .+..+...+....|+  |+.|+..+   .+..+.+|++.+++..   .+..               
T Consensus       180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---~l~~---------------  240 (429)
T PRK03629        180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVAS---------------  240 (429)
T ss_pred             eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---EccC---------------
Confidence            7999998655443 334456678888887  77777543   2357889998776521   1111               


Q ss_pred             eeEeecccceeeeeecCCceEEEEEeC--CeEEE-ecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEE
Q 018591          112 NYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS-GSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSA  184 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~-~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~  184 (353)
                                     ....+....|+|  +.|+. .+.+|  .|++||+.+++..... .+...+....|+++  .++..
T Consensus       241 ---------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~  304 (429)
T PRK03629        241 ---------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYT  304 (429)
T ss_pred             ---------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEE
Confidence                           122234578888  45554 34454  5889999887655443 34456778888433  55555


Q ss_pred             cC-CCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeeccc
Q 018591          185 SA-DGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKA  258 (353)
Q Consensus       185 ~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~  258 (353)
                      +. ++.  |..+|+.+++     . ..+....... ....|+|+|++++..+.+   ..|.+||+.++...  ...  ..
T Consensus       305 s~~~g~~~Iy~~d~~~g~-----~-~~lt~~~~~~-~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt--~~  373 (429)
T PRK03629        305 SDQAGRPQVYKVNINGGA-----P-QRITWEGSQN-QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLT--DT  373 (429)
T ss_pred             eCCCCCceEEEEECCCCC-----e-EEeecCCCCc-cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeC--CC
Confidence            44 444  4445666554     2 2222222222 678899999998775543   35888898776321  111  11


Q ss_pred             cceeEEEEEEcCcEEEEecCCCe---EEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          259 HEMAVLCVCLVGEFLCSGSADKS---IGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       259 ~~~~v~~~~~~~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .......++++|++|+.++.++.   +.++++.. +   ....+.+|.+.+...+|+|-
T Consensus       374 ~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~---~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        374 FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-R---FKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-C---CeEECccCCCCcCCcccCCC
Confidence            22233567789999988887664   67777754 3   23445678888999999983

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.53  E-value=1.2e-12  Score=99.67  Aligned_cols=247  Identities=18%  Similarity=0.264  Sum_probs=177.8

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      .++..+++|...+++...-  ..-+++.+.|.++++|--.+..+.....                              .
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI------------------------------~   64 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI------------------------------Y   64 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh------------------------------h
Confidence            3456678888888776554  6789999999999999755433211111                              1


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcC----CceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCC
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA----DLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~  196 (353)
                      .....+++++.+.+  ..|++|-.+|++.-+.+.    .....+....|...+..+.|  ++..+++.+.|..+.---.+
T Consensus        65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e  144 (404)
T KOG1409|consen   65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE  144 (404)
T ss_pred             hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence            13456788888888  788999999999988653    34556677789999999999  66689999998877655555


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLC  274 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  274 (353)
                      .+.     -+..+.-....  +++.+.-.  +...|...|.|..-.+...  ...++..+.+|...+.++.|+  ...|+
T Consensus       145 ~~~-----~lg~Y~~~~~~--t~~~~d~~--~~fvGd~~gqvt~lr~~~~--~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf  213 (404)
T KOG1409|consen  145 SGN-----RLGGYNFETPA--SALQFDAL--YAFVGDHSGQITMLKLEQN--GCQLITTFNGHTGEVTCLKWDPGQRLLF  213 (404)
T ss_pred             cCC-----cccceEeeccC--CCCceeeE--EEEecccccceEEEEEeec--CCceEEEEcCcccceEEEEEcCCCcEEE
Confidence            444     11111100000  11112111  5667777777777665544  235677889999999999998  67899


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +|..|..+.+||+--.+.  ...++.+|...|..+...+.    -+.|.+++.||.|.+|+.+...
T Consensus       214 Sg~~d~~vi~wdigg~~g--~~~el~gh~~kV~~l~~~~~----t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  214 SGASDHSVIMWDIGGRKG--TAYELQGHNDKVQALSYAQH----TRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             eccccCceEEEeccCCcc--eeeeeccchhhhhhhhhhhh----heeeeeccCCCeEEEEecccee
Confidence            999999999999975443  45568899999999999988    8899999999999999987543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=6.7e-13  Score=114.77  Aligned_cols=182  Identities=15%  Similarity=0.199  Sum_probs=147.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceee-EEEEE-----eCCEEEEecCCCcEEEEEcccCccceeEEeecccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSV-KAVVT-----VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPT   99 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v-~~~~~-----~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~   99 (353)
                      ...++.+..+..+.+||...+.....+.+..... .+...     ..-++++|+.-+.|.+|+........         
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~---------  169 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI---------  169 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc---------
Confidence            5688888999999999988877776665533222 12111     14478899999999999987333111         


Q ss_pred             ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-eccccCcceEEEEE
Q 018591          100 TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-SIKAHDDAVNGLVA  176 (353)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~i~~  176 (353)
                                             .+.+|.+.|..+.++.  .++++.+.|.++++|++++.+... ..-+|+..|..+++
T Consensus       170 -----------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~  226 (967)
T KOG0974|consen  170 -----------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF  226 (967)
T ss_pred             -----------------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence                                   2338999999999966  999999999999999999987766 66689999999999


Q ss_pred             eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591          177 SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       177 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                      .++.+++++.|-+.++|+.....      ...+..|...-+..++..++...+++++.|+.+++|++..
T Consensus       227 ~~n~i~t~gedctcrvW~~~~~~------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  227 LPNRIITVGEDCTCRVWGVNGTQ------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccceeEEeccceEEEEEecccce------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            88899999999999999776554      4478888888889999999999999999999999998765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.52  E-value=4.6e-12  Score=103.24  Aligned_cols=139  Identities=19%  Similarity=0.287  Sum_probs=117.5

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeecc--ccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIK--AHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      ..++-|...|.|.+|+...++....+.  .|.+.|+++.+.++  .|.+++.|+.+..|+.....     ..+.+.....
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~  145 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP  145 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC
Confidence            578889999999999999999888775  68999999998444  89999999999999999887     7777777777


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-------CcEEEE-ecCCCeEEEEe
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-------GEFLCS-GSADKSIGIWK  286 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~~-~~~dg~i~iw~  286 (353)
                      .+ .+++++||+..+++++  +.|++||+++.    +....+.+|.+++.++++-       |.++.+ ...+.-+.+|-
T Consensus       146 ~~-~sl~is~D~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  146 LV-SSLCISPDGKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             cc-ceEEEcCCCCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            66 9999999999999885  56999999998    8889999999999999883       455554 44566688887


Q ss_pred             cCC
Q 018591          287 REA  289 (353)
Q Consensus       287 ~~~  289 (353)
                      +..
T Consensus       219 v~~  221 (541)
T KOG4547|consen  219 VEK  221 (541)
T ss_pred             EEc
Confidence            665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.2e-11  Score=104.81  Aligned_cols=228  Identities=14%  Similarity=0.062  Sum_probs=137.3

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      ..|.+||.... ..+.+..+...+....|+  ++.|+..+.+   ..|.+||+.++...   .+.               
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---~l~---------------  244 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---LVA---------------  244 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---Eec---------------
Confidence            46999998544 444455556778888887  7778876633   46999999776521   111               


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYS  183 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~  183 (353)
                                     ...+...+..|+|  +.+ ++.+.+|  .|++||+.+++.. .+..+.......+|++ + .++.
T Consensus       245 ---------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f  308 (433)
T PRK04922        245 ---------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYF  308 (433)
T ss_pred             ---------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEE
Confidence                           1223344678888  444 4445555  5999999887653 4445555556778843 3 5555


Q ss_pred             Ec-CCCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeecc
Q 018591          184 AS-ADGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       184 ~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      .+ .+|.  |.++|+.+++     ... +....... ...+|+|+|++++..+.++   .|.+||+.++...  ...  .
T Consensus       309 ~sd~~g~~~iy~~dl~~g~-----~~~-lt~~g~~~-~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt--~  377 (433)
T PRK04922        309 TSDRGGRPQIYRVAASGGS-----AER-LTFQGNYN-ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT--P  377 (433)
T ss_pred             EECCCCCceEEEEECCCCC-----eEE-eecCCCCc-cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC--C
Confidence            44 4454  6666776654     222 22222222 5689999999988765433   5899998776322  111  1


Q ss_pred             ccceeEEEEEEcCcEEEEecC---CCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          258 AHEMAVLCVCLVGEFLCSGSA---DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      .....-..++++|++++..+.   .+.|.+++.....    ...+..+.+.+...+|+|
T Consensus       378 ~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~----~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        378 GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV----RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc----eEEcccCCCCCCCCccCC
Confidence            112223467778887776654   3467788875432    233344556677788887

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.51  E-value=4.9e-12  Score=96.46  Aligned_cols=262  Identities=15%  Similarity=0.200  Sum_probs=161.3

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      ..-|.++.|+  |++|++|..+|.|.++.-+......+.....+......       -.|+.        -..-...|..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE-------FDYLk--------SleieEKink   89 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE-------FDYLK--------SLEIEEKINK   89 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcc-------cchhh--------hhhhhhhhhh
Confidence            4568888898  99999999999999997654432122222222110000       00000        0023456788


Q ss_pred             EEEeC----CeEEEecCCCcEEEEEcCCceee-----------------------------------eec-cccCcceEE
Q 018591          134 LTVYN----GLIYSGSWDKTLKVWRVADLKCL-----------------------------------ESI-KAHDDAVNG  173 (353)
Q Consensus       134 ~~~~~----~~l~~~~~dg~v~iwd~~~~~~~-----------------------------------~~~-~~~~~~v~~  173 (353)
                      +.|.+    ..++..+.|.+|++|-+......                                   +.+ .+|.--|++
T Consensus        90 Irw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNS  169 (433)
T KOG1354|consen   90 IRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINS  169 (433)
T ss_pred             ceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeee
Confidence            88876    67888889999999987532110                                   001 257778899


Q ss_pred             EEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec---cCCceeeEEEEcCC-CCeEEeecCCCcEEEeecccccc
Q 018591          174 LVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG---HKDVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIV  248 (353)
Q Consensus       174 i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~  248 (353)
                      |.+ ++...+....|=.|.+|+++-... ...+....+.   .-..+|++..|+|. .+.++-.+..|+|++-|++....
T Consensus       170 IS~NsD~Et~lSADdLRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL  248 (433)
T KOG1354|consen  170 ISVNSDKETFLSADDLRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL  248 (433)
T ss_pred             eeecCccceEeeccceeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence            999 555555566788999999875431 1111111111   11235689999995 57788889999999999985421


Q ss_pred             ceeeeee------------ccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCC-----------
Q 018591          249 RWKLACE------------TKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE-----------  303 (353)
Q Consensus       249 ~~~~~~~------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~-----------  303 (353)
                      .......            +..--..|..+.+  +|+++++-.. -+|.+||+.....  ++.+++-|.           
T Consensus       249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~--pv~t~~vh~~lr~kLc~lYE  325 (433)
T KOG1354|consen  249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK--PVETYPVHEYLRSKLCSLYE  325 (433)
T ss_pred             hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC--cceEEeehHhHHHHHHHHhh
Confidence            1111110            1111233444555  4899988655 5799999965443  233333332           


Q ss_pred             -cCe---EEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          304 -GPV---KCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       304 -~~v---~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                       ..|   ..++|+-+    +.+++||+.....+++++..+.
T Consensus       326 nD~IfdKFec~~sg~----~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  326 NDAIFDKFECSWSGN----DSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ccchhheeEEEEcCC----cceEecccccceEEEecCCCCc
Confidence             222   45678877    8899999999999999966553

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=2.1e-12  Score=96.05  Aligned_cols=126  Identities=15%  Similarity=0.203  Sum_probs=89.2

Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC---CC
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA---DK  280 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg  280 (353)
                      ...+......+|..++|+|+++.+++  |..++.|.+||++.     +....+.........++|+|++|++++.   .|
T Consensus        51 ~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G  125 (194)
T PF08662_consen   51 VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----KKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNG  125 (194)
T ss_pred             cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----cEeEeecCCCceEEEECCCCCEEEEEEccCCCc
Confidence            33444333334699999999998755  44677999999973     3444444444444567778999998874   46


Q ss_pred             eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEcCCCCCccccc
Q 018591          281 SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       281 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~  346 (353)
                      .|.+||.++.+   .+.... | ..++.++|+|+    |++|++++.      |+.++||++. ++.+....
T Consensus       126 ~l~~wd~~~~~---~i~~~~-~-~~~t~~~WsPd----Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  126 DLEFWDVRKKK---KISTFE-H-SDATDVEWSPD----GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEEEECCCCE---Eeeccc-c-CcEEEEEEcCC----CCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            79999999766   454433 3 34789999999    999999874      7889999985 55554433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.51  E-value=4.7e-10  Score=89.93  Aligned_cols=275  Identities=10%  Similarity=0.044  Sum_probs=164.2

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEec----------CCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAH----------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      ++|.+.|..+++.+..+.....+-..++.+++.++.+.          .+..|.+||..+.+     .+..++.....  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-----~~~~i~~p~~p--   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-----PIADIELPEGP--   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-----EEeEEccCCCc--
Confidence            89999999999999888654333332555577766554          47899999999887     33333321100  


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-C-CCcEEEEEcCCceeeeeccccCcceEEEEEeCCeE
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-W-DKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIV  181 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~-dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l  181 (353)
                                      +.  .....-..+.+++  +++++.. . +..|.+.|+.+++.+.++.-. +...-...++...
T Consensus       100 ----------------~~--~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~  160 (352)
T TIGR02658       100 ----------------RF--LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTF  160 (352)
T ss_pred             ----------------hh--hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCcc
Confidence                            00  0011223456666  5666554 3 789999999999999888642 2222222344444


Q ss_pred             EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceee-eeec---
Q 018591          182 YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKL-ACET---  256 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---  256 (353)
                      .+-+.||......+.+...........+..........-.|.+ +++++++... |.|.+.|+......... ...+   
T Consensus       161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~  239 (352)
T TIGR02658       161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEA  239 (352)
T ss_pred             EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccc
Confidence            4556677766655544331111111111111111101113455 8888888777 99999996553221111 1111   


Q ss_pred             ------cccceeEEEEEEcCcEEEEec----------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591          257 ------KAHEMAVLCVCLVGEFLCSGS----------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF  320 (353)
Q Consensus       257 ------~~~~~~v~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  320 (353)
                            ........++.++++.+++..          ..+.|.++|..+.+.   +..+.- ...+..++++||    ++
T Consensus       240 ~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv---i~~i~v-G~~~~~iavS~D----gk  311 (352)
T TIGR02658       240 EKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR---LRKIEL-GHEIDSINVSQD----AK  311 (352)
T ss_pred             ccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE---EEEEeC-CCceeeEEECCC----CC
Confidence                  111112367777777777642          235799999998874   333331 347899999999    77


Q ss_pred             -EEEEcc-CCCeEEEEEcCCCCCcccc
Q 018591          321 -LLYSGS-LDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       321 -~l~s~~-~dg~i~iw~~~~~~~~~~~  345 (353)
                       +|++.. .++.|.+.|..+++.+.+.
T Consensus       312 p~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             777665 6788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=2.3e-13  Score=110.36  Aligned_cols=283  Identities=14%  Similarity=0.192  Sum_probs=181.5

Q ss_pred             eeeeeCccCceEEEEE-C-CcEEEEEeCCCcEEEEeCCC-------ceeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591            9 LAVLSGHVGSVSSLAL-C-GEFILSASQGKDIIVWQQPD-------LRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR   79 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~-~-~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~   79 (353)
                      +..+.||+..|..++- + .+-+++++.|.+|++|.+..       ..+..++..|..+|..+.|-.+.-..++.||.|.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH  807 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH  807 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence            4578899999999976 4 78899999999999999753       3366778899999999999744334445678999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEe-cCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSG-SWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~-~~dg~v~iwd~~~  157 (353)
                      +||.--+.     .+.......                      -.+..+.|.|+.--. ..+++| +...+|+++|.+.
T Consensus       808 lWDPFigr-----~Laq~~dap----------------------k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs  860 (1034)
T KOG4190|consen  808 LWDPFIGR-----LLAQMEDAP----------------------KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS  860 (1034)
T ss_pred             eecccccc-----hhHhhhcCc----------------------ccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence            99975544     111111000                      003334555554322 444444 7889999999998


Q ss_pred             ceeeeecc-----ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          158 LKCLESIK-----AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       158 ~~~~~~~~-----~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      .+-..+++     +....+.+++.  .++.++++-.+|.|.+.|.++++     .+..++.-.-.. ..++ .|..+.++
T Consensus       861 ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~-----vINswrpmecdl-lqla-apsdq~L~  933 (1034)
T KOG4190|consen  861 CEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK-----VINSWRPMECDL-LQLA-APSDQALA  933 (1034)
T ss_pred             ccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc-----eeccCCcccchh-hhhc-CchhHHHH
Confidence            77665553     33456788888  56699999999999999999997     444433322211 1122 24556677


Q ss_pred             eecCCCcEEE-eeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc-ceEEeccc--cCCCcCe
Q 018591          231 GGGSDGFVMG-WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG-KLCRVGAI--TGHEGPV  306 (353)
Q Consensus       231 ~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~--~~h~~~v  306 (353)
                      ....|..+.+ |-...+.    .....+....+..-+..-|.-|++....+.+.+|.-...- ....+.++  ....+..
T Consensus       934 ~saldHslaVnWhaldgi----mh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~l 1009 (1034)
T KOG4190|consen  934 QSALDHSLAVNWHALDGI----MHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTL 1009 (1034)
T ss_pred             hhcccceeEeeehhcCCe----eeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCcc
Confidence            7777888887 7665552    2222222222222222336677777777788888532110 00011112  2345678


Q ss_pred             EEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591          307 KCLQASPNAVGGGFLLYSGSLDKSLRV  333 (353)
Q Consensus       307 ~~~~~~~~~~~~~~~l~s~~~dg~i~i  333 (353)
                      ++++..|-    +.-++.|.+.|.|.+
T Consensus      1010 Tala~LPL----N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1010 TALAPLPL----NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ceeeeccc----cchhhccCCCCceee
Confidence            89999998    778888888888875

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.4e-11  Score=102.02  Aligned_cols=194  Identities=14%  Similarity=0.054  Sum_probs=119.7

Q ss_pred             ecCCceEEEEEeC--CeEEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCC--cEEEEeC
Q 018591          126 EHADSISCLTVYN--GLIYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADG--KIKAWGK  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg--~i~iwd~  195 (353)
                      .+...+.+..|+|  +.|+..+.   +..|++||+.+++... +....+...+..|++ + .+ ++.+.+|  .|++||+
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            4666788899998  66776653   3469999998776543 223344455678843 3 44 4555555  5999999


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCc--EEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGF--VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      .+++     . ..+..+... ....+|+|||+.++..+ .+|.  |.++++..+..  +.. ...+......+++++|++
T Consensus       280 ~~g~-----~-~~lt~~~~~-~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~l-t~~g~~~~~~~~SpDG~~  349 (433)
T PRK04922        280 GSRQ-----L-TRLTNHFGI-DTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERL-TFQGNYNARASVSPDGKK  349 (433)
T ss_pred             CCCC-----e-EECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe-ecCCCCccCEEECCCCCE
Confidence            8775     2 233333332 26789999999887665 3454  55566655421  111 122222223567778988


Q ss_pred             EEEecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC---CeEEEEEcCCC
Q 018591          273 LCSGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD---KSLRVWWVSKQ  339 (353)
Q Consensus       273 l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~  339 (353)
                      |+..+.++   .|.+||+.+++.. .   +. +........|+||    |++++..+.+   +.|.++++...
T Consensus       350 Ia~~~~~~~~~~I~v~d~~~g~~~-~---Lt-~~~~~~~p~~spd----G~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        350 IAMVHGSGGQYRIAVMDLSTGSVR-T---LT-PGSLDESPSFAPN----GSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             EEEEECCCCceeEEEEECCCCCeE-E---CC-CCCCCCCceECCC----CCEEEEEEecCCceEEEEEECCCC
Confidence            87655432   6999999876521 2   22 2223456789999    8877766653   45777877543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.2e-11  Score=102.78  Aligned_cols=229  Identities=13%  Similarity=0.048  Sum_probs=135.0

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      ..|.++|. ++.....+..+...+.+..|+  ++.|+..+.+   ..|.+||+.+++...   +.               
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~---------------  236 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV---VA---------------  236 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---ee---------------
Confidence            46777786 444444555667788888887  7777766532   359999998775211   11               


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCcEEEEEc--CCceeeeeccccCcceEEEEEeC-C-eEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKTLKVWRV--ADLKCLESIKAHDDAVNGLVASK-G-IVYS  183 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~  183 (353)
                                     ...+.+....|+|  +.++ +.+.+|...+|.+  ..+. ...+..+........|++ + .++.
T Consensus       237 ---------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f  300 (427)
T PRK02889        237 ---------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYF  300 (427)
T ss_pred             ---------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEE
Confidence                           1223455788988  4554 5677887666654  4333 445555555566778843 3 5554


Q ss_pred             Ec-CCCcEEEEeCC--CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeecc
Q 018591          184 AS-ADGKIKAWGKE--LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       184 ~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      .+ .+|...+|.+.  .+.     .. .+....... ....|+|+|++++..+.++   .|.+||+.++...  ..  ..
T Consensus       301 ~s~~~g~~~Iy~~~~~~g~-----~~-~lt~~g~~~-~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~l--t~  369 (427)
T PRK02889        301 TSDRGGAPQIYRMPASGGA-----AQ-RVTFTGSYN-TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--AL--TD  369 (427)
T ss_pred             EecCCCCcEEEEEECCCCc-----eE-EEecCCCCc-CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--Ec--cC
Confidence            44 45666666553  333     11 111112222 4678999999998766554   5999999876321  11  11


Q ss_pred             ccceeEEEEEEcCcEEEEecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          258 AHEMAVLCVCLVGEFLCSGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ........++++|+.|+..+.++   .+++.+.. ++.   ...+..+.+.+...+|+|-
T Consensus       370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~---~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRI---KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCc---eEEeecCCCCCCCCccCCC
Confidence            22233456778888877766443   35555663 332   2233446677888888874

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.48  E-value=3.6e-11  Score=89.86  Aligned_cols=267  Identities=13%  Similarity=0.125  Sum_probs=167.9

Q ss_pred             CCcEEEEeCCCceeeE--Ee-ccCceeeEEEEEe-----CC-EEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           35 GKDIIVWQQPDLRMFT--KF-GHGDGSVKAVVTV-----GN-KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        35 dg~v~vwd~~~~~~~~--~~-~~~~~~v~~~~~~-----~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      -|.+.++++.+.+...  ++ ......+..+.|.     +. .++-+..+|.|.++........  ..+..+....    
T Consensus        45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~k----  118 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--VHLRGLSSKK----  118 (339)
T ss_pred             ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee--eeecccchhh----
Confidence            4678899987765543  11 1123456666665     44 4666778889999887654311  0111111000    


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee--eeeccccCcceEEEEE---eC
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVA---SK  178 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~---~~  178 (353)
                                          -......++.|++  ..++++..+|.+.+-+......  ++.++.|..+.+...|   .+
T Consensus       119 --------------------i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p  178 (339)
T KOG0280|consen  119 --------------------ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP  178 (339)
T ss_pred             --------------------hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence                                0011234666776  7788999999999766555444  4478999999999988   67


Q ss_pred             CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591          179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       179 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      +.+++|+.|+.+..||++..+.   -.....+.|...+ .++.-+| .+.++++|+.|..|++||.++..   ++.....
T Consensus       179 nlvytGgDD~~l~~~D~R~p~~---~i~~n~kvH~~GV-~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~---kPl~~~~  251 (339)
T KOG0280|consen  179 NLVYTGGDDGSLSCWDIRIPKT---FIWHNSKVHTSGV-VSIYSSPPKPTYIATGSYDECIRVLDTRNMG---KPLFKAK  251 (339)
T ss_pred             ceEEecCCCceEEEEEecCCcc---eeeecceeeecce-EEEecCCCCCceEEEeccccceeeeehhccc---CccccCc
Confidence            7999999999999999994431   1223345566665 7777765 57899999999999999999642   2222111


Q ss_pred             ccceeEEEEEEc----CcEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCe
Q 018591          258 AHEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKS  330 (353)
Q Consensus       258 ~~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~  330 (353)
                       -.+.|..+...    +..|+++-.+| .+|-+.+.....  ..+...+.|.+-...-.|...    ...|+|++ .|..
T Consensus       252 -v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~----~~~lATCsFYDk~  325 (339)
T KOG0280|consen  252 -VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK----DSFLATCSFYDKK  325 (339)
T ss_pred             -cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc----cceeeeeeccccc
Confidence             22556666554    34455555555 666666543221  133445677777777777544    56788865 4777


Q ss_pred             EE-EEEcCCCC
Q 018591          331 LR-VWWVSKQS  340 (353)
Q Consensus       331 i~-iw~~~~~~  340 (353)
                      ++ +|-.-++.
T Consensus       326 ~~~~Wl~~t~~  336 (339)
T KOG0280|consen  326 IRQLWLHITGE  336 (339)
T ss_pred             eeeeeeeccCC
Confidence            55 88655543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=6.2e-11  Score=100.62  Aligned_cols=228  Identities=7%  Similarity=-0.069  Sum_probs=138.8

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC---CCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      ..|.+||.. +...+.+..|...+....|+  ++.|+..+.   +..|.+||+.++....                    
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------  240 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------  240 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence            378899974 44445566677789999987  777776653   4689999998765211                    


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCc--EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKT--LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYS  183 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~  183 (353)
                                   +..+.+.+....|+|  +.| ++.+.++.  |++||+.+++. ..+..+........|+++  .++.
T Consensus       241 -------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f  306 (435)
T PRK05137        241 -------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVF  306 (435)
T ss_pred             -------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEE
Confidence                         113445566788888  444 45555554  77789877655 445555556667788433  5555


Q ss_pred             Ec-CCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeecc
Q 018591          184 AS-ADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       184 ~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      .+ .+|  .|.++|+..+.     .. .+....... ....|+|+|+.++....+   ..|.+||+..+..  ....  .
T Consensus       307 ~s~~~g~~~Iy~~d~~g~~-----~~-~lt~~~~~~-~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt--~  375 (435)
T PRK05137        307 ESDRSGSPQLYVMNADGSN-----PR-RISFGGGRY-STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT--S  375 (435)
T ss_pred             EECCCCCCeEEEEECCCCC-----eE-EeecCCCcc-cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc--C
Confidence            44 333  58888877664     22 222222222 668899999998876543   3577888755421  1111  1


Q ss_pred             ccceeEEEEEEcCcEEEEecCC------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          258 AHEMAVLCVCLVGEFLCSGSAD------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ........++++|+.|+..+.+      ..++++|+..+.. ..   +. ..+.+...+|+|-
T Consensus       376 ~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~---l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        376 GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-RE---VP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EE---cc-CCCCccCcccCCC
Confidence            2223345677788877654432      3688888866442 22   22 2344667778774

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=4e-09  Score=86.65  Aligned_cols=274  Identities=14%  Similarity=0.202  Sum_probs=160.7

Q ss_pred             EEEEeCC----CcEEEEeC--CCceee--EEeccCceeeEEEEEe--CCEEEEecC----CCcEEEEEcccCccceeEEe
Q 018591           29 ILSASQG----KDIIVWQQ--PDLRMF--TKFGHGDGSVKAVVTV--GNKVFTAHQ----DSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        29 l~s~~~d----g~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~~----dg~i~~w~~~~~~~~~~~~~   94 (353)
                      ++.|+..    +.|.+|++  +++++.  ..... ......++++  +++|+++..    +|.|..|++.... .....+
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~   79 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLL   79 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEe
Confidence            4556665    68999987  455443  22221 2233445564  788888766    5789999987752 111222


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCC-ceeeee---cc--
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVAD-LKCLES---IK--  165 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~-~~~~~~---~~--  165 (353)
                      ...+                           .....-..+++++  ++|+++ ..+|.|.++++.. +.....   +.  
T Consensus        80 ~~~~---------------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~  132 (345)
T PF10282_consen   80 NSVP---------------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE  132 (345)
T ss_dssp             EEEE---------------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE
T ss_pred             eeec---------------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC
Confidence            2111                           1223445677877  555555 4689999999976 333222   11  


Q ss_pred             --------ccCcceEEEEEeCC--eEEE-EcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEee-
Q 018591          166 --------AHDDAVNGLVASKG--IVYS-ASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGG-  232 (353)
Q Consensus       166 --------~~~~~v~~i~~~~~--~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-  232 (353)
                              .......++.+.++  ++++ .-....|.+|++......... ...+. .....+ ..++|+|+++++++. 
T Consensus       133 g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GP-Rh~~f~pdg~~~Yv~~  210 (345)
T PF10282_consen  133 GSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGP-RHLAFSPDGKYAYVVN  210 (345)
T ss_dssp             EEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSE-EEEEE-TTSSEEEEEE
T ss_pred             CCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCC-cEEEEcCCcCEEEEec
Confidence                    12345677888433  4444 444568999999766521111 22222 233444 899999999987655 


Q ss_pred             cCCCcEEEeeccccccceeeeeecc-------cc-ceeEEEEEEcCcEEEEec-CCCeEEEEecC-CCcceEEeccccCC
Q 018591          233 GSDGFVMGWEGNVEIVRWKLACETK-------AH-EMAVLCVCLVGEFLCSGS-ADKSIGIWKRE-AFGKLCRVGAITGH  302 (353)
Q Consensus       233 ~~dg~i~i~d~~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~-~~~~~~~~~~~~~h  302 (353)
                      -.++.|.++++.......+......       +. ...-..++++|++|+++. .++.|.+|+++ ....+..+......
T Consensus       211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~  290 (345)
T PF10282_consen  211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG  290 (345)
T ss_dssp             TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred             CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence            4577899999883222222222111       11 234456777898877655 57789999994 32344455555444


Q ss_pred             CcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcC
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVS  337 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~  337 (353)
                      ....+.++++|+    |++|+++. .++.|.+|++.
T Consensus       291 G~~Pr~~~~s~~----g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  291 GKFPRHFAFSPD----GRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SSSEEEEEE-TT----SSEEEEEETTTTEEEEEEEE
T ss_pred             CCCccEEEEeCC----CCEEEEEecCCCeEEEEEEe
Confidence            455899999999    88888776 56789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=3.7e-11  Score=97.88  Aligned_cols=167  Identities=17%  Similarity=0.179  Sum_probs=120.5

Q ss_pred             EEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591          172 NGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       172 ~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  249 (353)
                      ..+++  ...-|+.++....|+-++++.+.     .+..+....+.. +++..++...+|++|+.+|.|..||.+.....
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGr-----fL~P~~~~~~~l-N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv  210 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-----FLNPFETDSGEL-NVVSINEEHGLLACGTEDGVVEFWDPRDKSRV  210 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccc-----cccccccccccc-eeeeecCccceEEecccCceEEEecchhhhhh
Confidence            34555  22245555555679999999998     666666665555 99999999999999999999999999886433


Q ss_pred             eeeee--eccccc-----eeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591          250 WKLAC--ETKAHE-----MAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF  320 (353)
Q Consensus       250 ~~~~~--~~~~~~-----~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  320 (353)
                      ..+..  ....|.     ..|+++.|+  |-.+++|..+|.+.|||+++.+.  .+..-.+..-+|..+.|.+..  ++.
T Consensus       211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~~~--~q~  286 (703)
T KOG2321|consen  211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQDTD--QQN  286 (703)
T ss_pred             eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccccC--CCc
Confidence            22221  222232     348888885  67899999999999999998764  232334456689999998862  255


Q ss_pred             EEEEccCCCeEEEEEcCCCCCcccccCCC
Q 018591          321 LLYSGSLDKSLRVWWVSKQSSTSDSEEKS  349 (353)
Q Consensus       321 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  349 (353)
                      .++|. ....++|||-.+++.....+...
T Consensus       287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~  314 (703)
T KOG2321|consen  287 KVVSM-DKRILKIWDECTGKPMASIEPTS  314 (703)
T ss_pred             eEEec-chHHhhhcccccCCceeeccccC
Confidence            66665 35589999999999888776543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=5.4e-10  Score=91.65  Aligned_cols=280  Identities=9%  Similarity=0.055  Sum_probs=153.8

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec-CCC
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH-QDS   76 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg   76 (353)
                      ...+.+.+..+..+...-..+.|+  |+++++++.||.|.++|+.+++.+.++..... ...++++  |++++++. .++
T Consensus        22 D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~  100 (369)
T PF02239_consen   22 DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPG  100 (369)
T ss_dssp             ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETT
T ss_pred             ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCC
Confidence            345678888888665544456675  89999999999999999999999999977544 4556665  88887664 688


Q ss_pred             cEEEEEcccCccceeEEeec---------------cccccceeeeecccceeEeec--c--cceeeeeecCCceEEEEEe
Q 018591           77 RIRVWKVSRSSENVFRLVDT---------------LPTTKDYLGKFMKQSNYVQTR--R--HHKRLWIEHADSISCLTVY  137 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~i~~~~~~  137 (353)
                      .+.++|.++.+....-....               .+....++.............  .  .................|+
T Consensus       101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d  180 (369)
T PF02239_consen  101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD  180 (369)
T ss_dssp             EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-
T ss_pred             ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC
Confidence            99999998866221111111               111111111111111111110  0  0111122333445567788


Q ss_pred             C--CeEE-EecCCCcEEEEEcCCceeeeecc----ccCcceEEEE-------E----eCCeEEEEcCCCcEEEEeCCCCC
Q 018591          138 N--GLIY-SGSWDKTLKVWRVADLKCLESIK----AHDDAVNGLV-------A----SKGIVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       138 ~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~i~-------~----~~~~l~~~~~dg~i~iwd~~~~~  199 (353)
                      +  ++++ +...++.|-++|..+++.+..+.    .|..+...+-       |    .....++.-....+.+||....+
T Consensus       181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk  260 (369)
T PF02239_consen  181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK  260 (369)
T ss_dssp             TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred             cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence            7  4544 45667899999999888776542    2333333322       2    11122222233455567776665


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEee----cCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE--cCcE
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG----GSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL--VGEF  272 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~  272 (353)
                           ..+.+......  .-+..+|+++++.+.    ...+.|.++|.++.    +....+.. ....+..+.+  +|+.
T Consensus       261 -----vv~~I~~~G~g--lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl----~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  261 -----VVKTIPTQGGG--LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL----KVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             -----EEEEEE-SSSS----EE--TT-SEEEEE-TT-SSHT-EEEEECCGT----EEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             -----EEEEEECCCCc--ceeecCCCCccEEeeccCCCCCceEEEEECcCc----ceeEEEeccCCCcEeccEECCCCCE
Confidence                 66666654433  678889999999988    45689999999987    33333322 2223555555  4776


Q ss_pred             EEEec--CCCeEEEEecCCCcce
Q 018591          273 LCSGS--ADKSIGIWKREAFGKL  293 (353)
Q Consensus       273 l~~~~--~dg~i~iw~~~~~~~~  293 (353)
                      +..+.  .++.|.+||..+.+..
T Consensus       330 v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  330 VWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEEEEecCCCEEEEEECCCcEEE
Confidence            55444  3447999999998743

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.45  E-value=3.8e-11  Score=91.23  Aligned_cols=276  Identities=14%  Similarity=0.193  Sum_probs=170.2

Q ss_pred             EEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCcEEEEEcccCccceeEEeecc
Q 018591           21 SLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSRIRVWKVSRSSENVFRLVDTL   97 (353)
Q Consensus        21 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~   97 (353)
                      ++.-+|+++|+++.- .+.|-|.++.+..+.+.. -..|.-+.|.  . -.|.....|+.|.+|++...+-     .   
T Consensus        15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----~---   84 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----Y---   84 (447)
T ss_pred             eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----E---
Confidence            333359999999875 888889888776655543 3456667776  2 3455678899999999987651     1   


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEE
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL  174 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i  174 (353)
                                              ..+......+.+++|+|   ..|.+...+-.|.+|.+.+.+.... +-....+..+
T Consensus        85 ------------------------ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~  139 (447)
T KOG4497|consen   85 ------------------------CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGY  139 (447)
T ss_pred             ------------------------EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeE
Confidence                                    11114567889999999   5677888899999999987654432 2223344556


Q ss_pred             EEe-CC-eEEEEcC------------------------------------CCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591          175 VAS-KG-IVYSASA------------------------------------DGKIKAWGKELGKSHCHSLKGILEGHKDVS  216 (353)
Q Consensus       175 ~~~-~~-~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (353)
                      +|+ ++ +.+.++.                                    +..+.+||.--.-       ..+.-+.+-.
T Consensus       140 ~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-------kv~aYe~~lG  212 (447)
T KOG4497|consen  140 AFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-------KVYAYERGLG  212 (447)
T ss_pred             EECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh-------eeeeeeeccc
Confidence            662 22 2222221                                    2234455432111       1222233333


Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEEeecccccc-------------------------------------------c----
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV-------------------------------------------R----  249 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------------------------~----  249 (353)
                      +..++|+|.++++++|+.|+.+++.+--+-+.                                           .    
T Consensus       213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s  292 (447)
T KOG4497|consen  213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES  292 (447)
T ss_pred             eeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence            58899999999999999999988753211000                                           0    


Q ss_pred             ---------------eeeeeecccccee--EEEEEEcCcEEEEecC--CCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591          250 ---------------WKLACETKAHEMA--VLCVCLVGEFLCSGSA--DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       250 ---------------~~~~~~~~~~~~~--v~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~  310 (353)
                                     .++...+......  ..+++.|..++++-..  -+.+-+||++..+    +...-....+|.+..
T Consensus       293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~piraf~  368 (447)
T KOG4497|consen  293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKHPIRAFE  368 (447)
T ss_pred             hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhccceeEEE
Confidence                           0000000111111  2344445667776543  4679999998765    333334567899999


Q ss_pred             eecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      |.|.    ...|+.+.....+++|...-...+....
T Consensus       369 WdP~----~prL~vctg~srLY~W~psg~~~V~vP~  400 (447)
T KOG4497|consen  369 WDPG----RPRLVVCTGKSRLYFWAPSGPRVVGVPK  400 (447)
T ss_pred             eCCC----CceEEEEcCCceEEEEcCCCceEEecCC
Confidence            9998    6677777777789999887665554433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.8e-11  Score=94.03  Aligned_cols=198  Identities=13%  Similarity=0.151  Sum_probs=132.5

Q ss_pred             CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc-cCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcc
Q 018591          128 ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA-HDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSH  201 (353)
Q Consensus       128 ~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~  201 (353)
                      ...+..++|++  ..++++..|-.|++||-.. ++...++. ....|++++|.|   ..++.|+. +.|.+|.....-..
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence            34577889998  7888999999999999765 44444432 357899999943   37777776 45999976432110


Q ss_pred             -------cccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE
Q 018591          202 -------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL  273 (353)
Q Consensus       202 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  273 (353)
                             .......++.....+|+++.|.+||..+++++. |..|.|||..++....  .............++|++.+|
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p--L~~~glgg~slLkwSPdgd~l  253 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP--LIPKGLGGFSLLKWSPDGDVL  253 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc--ccccCCCceeeEEEcCCCCEE
Confidence                   111223344444456799999999999988764 6789999999884322  222333444567888899999


Q ss_pred             EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +++.-|+..++|+......  ... ..--.+.|....|+|+    |.+|+.+... .=++|.+.
T Consensus       254 faAt~davfrlw~e~q~wt--~er-w~lgsgrvqtacWspc----GsfLLf~~sg-sp~lysl~  309 (445)
T KOG2139|consen  254 FAATCDAVFRLWQENQSWT--KER-WILGSGRVQTACWSPC----GSFLLFACSG-SPRLYSLT  309 (445)
T ss_pred             EEecccceeeeehhcccce--ecc-eeccCCceeeeeecCC----CCEEEEEEcC-CceEEEEe
Confidence            9999999999996543221  111 1123458999999999    6665544322 23455544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.7e-10  Score=96.23  Aligned_cols=194  Identities=10%  Similarity=-0.013  Sum_probs=117.7

Q ss_pred             ecCCceEEEEEeC--CeEEEec---CCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCC--cEEEEeC
Q 018591          126 EHADSISCLTVYN--GLIYSGS---WDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADG--KIKAWGK  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg--~i~iwd~  195 (353)
                      .+...+....|+|  +.|+..+   .+..|.+||+.+++..... ...+.+....|+++  .|+ +.+.+|  .|.+||+
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            4556788999999  5666543   3457999999887543322 22333456788443  454 334455  5889999


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEe--eccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGW--EGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      .+++     .... ..+... +....|+|||+.|+..+. ++...+|  |+..+..  ... ...........++++|++
T Consensus       275 ~tg~-----~~~l-t~~~~~-~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~l-t~~~~~~~~~~~SpDG~~  344 (429)
T PRK03629        275 ASGQ-----IRQV-TDGRSN-NTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRI-TWEGSQNQDADVSSDGKF  344 (429)
T ss_pred             CCCC-----EEEc-cCCCCC-cCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEe-ecCCCCccCEEECCCCCE
Confidence            8775     3322 222223 378999999998876654 3444555  5554421  111 122222234567788888


Q ss_pred             EEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCe---EEEEEcCCC
Q 018591          273 LCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKS---LRVWWVSKQ  339 (353)
Q Consensus       273 l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~---i~iw~~~~~  339 (353)
                      |+..+.+   ..|.+||+.+++. ..+..  .  .......|+||    |++|+.++.++.   +.++++...
T Consensus       345 Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~--~--~~~~~p~~SpD----G~~i~~~s~~~~~~~l~~~~~~G~  408 (429)
T PRK03629        345 MVMVSSNGGQQHIAKQDLATGGV-QVLTD--T--FLDETPSIAPN----GTMVIYSSSQGMGSVLNLVSTDGR  408 (429)
T ss_pred             EEEEEccCCCceEEEEECCCCCe-EEeCC--C--CCCCCceECCC----CCEEEEEEcCCCceEEEEEECCCC
Confidence            8765543   3588899987652 22221  1  12346789999    999998888764   677777533

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.2e-10  Score=97.32  Aligned_cols=196  Identities=14%  Similarity=0.034  Sum_probs=122.3

Q ss_pred             ecCCceEEEEEeC--CeEEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCCc--EEEEeC
Q 018591          126 EHADSISCLTVYN--GLIYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADGK--IKAWGK  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg~--i~iwd~  195 (353)
                      .|...+.+..|+|  +.|+..+.   +..|++||+.+++.. .+..+.+.+....|++ + .+ ++.+.++.  |.+||+
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  277 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL  277 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence            5777899999999  56666543   468999999887653 3444566677888843 3 44 45565655  777788


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      .++.     . ..+..+... .....|+|||+.++..+. +|  .|+++|+..+..  ..... .........++++|+.
T Consensus       278 ~~~~-----~-~~Lt~~~~~-~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~--~~lt~-~~~~~~~~~~SpdG~~  347 (435)
T PRK05137        278 RSGT-----T-TRLTDSPAI-DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP--RRISF-GGGRYSTPVWSPRGDL  347 (435)
T ss_pred             CCCc-----e-EEccCCCCc-cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe--EEeec-CCCcccCeEECCCCCE
Confidence            8765     2 233333333 367899999998876653 33  577778766522  11111 1111223457778888


Q ss_pred             EEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC------CeEEEEEcCCCCC
Q 018591          273 LCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD------KSLRVWWVSKQSS  341 (353)
Q Consensus       273 l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~~~~  341 (353)
                      |+....+   ..|.+||+..+.. ..+   . ....+....|+||    |+.|+..+.+      ..+.++++..+..
T Consensus       348 ia~~~~~~~~~~i~~~d~~~~~~-~~l---t-~~~~~~~p~~spD----G~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        348 IAFTKQGGGQFSIGVMKPDGSGE-RIL---T-SGFLVEGPTWAPN----GRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEEEEcCCCceEEEEEECCCCce-Eec---c-CCCCCCCCeECCC----CCEEEEEEccCCCCCcceEEEEECCCCce
Confidence            8776543   3688888765432 122   1 1234678899999    8877665442      2577778765543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=1.9e-12  Score=118.15  Aligned_cols=184  Identities=16%  Similarity=0.273  Sum_probs=141.4

Q ss_pred             eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      ++.|-..|.++.-+  ..+.+||+.||.|++|....++.+..+.. ....|+.+.|+  |+.+..+..||.+.+|.+...
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            33444556666554  67899999999999999988888777632 24788888887  899999999999999998732


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec---CCCcEEEEEcCC---cee
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS---WDKTLKVWRVAD---LKC  160 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~dg~v~iwd~~~---~~~  160 (353)
                      .                                 ...+..|......+.|-...+++++   .++.+.+||..-   ..+
T Consensus      2284 ~---------------------------------~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2284 P---------------------------------YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred             c---------------------------------eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence            2                                 2223368888888888887777764   568899999642   223


Q ss_pred             eeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591          161 LESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV  238 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  238 (353)
                      +.  ..|.+.++++++-|+  .+++|+.+|.|++||++..+     +...++.          +. ...++++|+..|.+
T Consensus      2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq-----l~h~~~~----------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-----LRHTFQA----------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred             ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH-----HHHHhhh----------hh-hhheeeccCcccce
Confidence            34  689999999999443  89999999999999999876     4444433          23 45689999999999


Q ss_pred             EEeecccc
Q 018591          239 MGWEGNVE  246 (353)
Q Consensus       239 ~i~d~~~~  246 (353)
                      +||++...
T Consensus      2393 kIw~~s~~ 2400 (2439)
T KOG1064|consen 2393 KIWRLSEF 2400 (2439)
T ss_pred             EEEEcccc
Confidence            99999875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.42  E-value=7.2e-10  Score=93.01  Aligned_cols=266  Identities=12%  Similarity=0.060  Sum_probs=161.8

Q ss_pred             EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591           22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      +..++..++.++.+|.+..+|.++|+.+...........+....++.++.+..+|.+..+|.++++..-..... .+.  
T Consensus       116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~--  192 (394)
T PRK11138        116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLD-VPS--  192 (394)
T ss_pred             cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCC-CCc--
Confidence            34456677888899999999999999988776543322223344778888888999999999888721111000 000  


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCc----c-------
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDD----A-------  170 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~-------  170 (353)
                                          ....+...++    ...+.++.++.+|.+..+|..+++.+...+....    .       
T Consensus       193 --------------------~~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~  248 (394)
T PRK11138        193 --------------------LTLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV  248 (394)
T ss_pred             --------------------ccccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence                                0000111111    1235677788899999999998887665431100    0       


Q ss_pred             eEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce
Q 018591          171 VNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW  250 (353)
Q Consensus       171 v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  250 (353)
                      ...-...++.++.++.+|.+..+|..+++..     -...  .... ..+.  ..+..++.++.+|.+..+|..++...+
T Consensus       249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~-----W~~~--~~~~-~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W  318 (394)
T PRK11138        249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIV-----WKRE--YGSV-NDFA--VDGGRIYLVDQNDRVYALDTRGGVELW  318 (394)
T ss_pred             CCCcEEECCEEEEEEcCCeEEEEECCCCCEE-----Eeec--CCCc-cCcE--EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            0112235677888888999999999998722     1111  1111 1222  235678888899999999999886555


Q ss_pred             eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE-EEeecCCCCCCeEEEEccCCC
Q 018591          251 KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC-LQASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~l~s~~~dg  329 (353)
                      .......   ....+....+.+|+.++.+|.++..|..+++....   .+-....+.+ ..+.      +..|+.++.||
T Consensus       319 ~~~~~~~---~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~---~~~~~~~~~s~P~~~------~~~l~v~t~~G  386 (394)
T PRK11138        319 SQSDLLH---RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQ---QKVDSSGFLSEPVVA------DDKLLIQARDG  386 (394)
T ss_pred             cccccCC---CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEE---EEcCCCcceeCCEEE------CCEEEEEeCCc
Confidence            4321111   11111222467788899999999999999874332   2222222222 2222      45788889999


Q ss_pred             eEEEEEc
Q 018591          330 SLRVWWV  336 (353)
Q Consensus       330 ~i~iw~~  336 (353)
                      .|..++.
T Consensus       387 ~l~~~~~  393 (394)
T PRK11138        387 TVYAITR  393 (394)
T ss_pred             eEEEEeC
Confidence            9988764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.41  E-value=8.3e-10  Score=92.63  Aligned_cols=276  Identities=12%  Similarity=0.063  Sum_probs=170.3

Q ss_pred             EECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce----------ee-EEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591           23 ALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG----------SV-KAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        23 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      .+.+..++.++.+|.|.-+|.++|+.+........          .+ ..+...++.++.++.+|.+..+|.++++..-.
T Consensus        66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            44577888888899999999999998877643220          11 12344577888899999999999988863211


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceE-EEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcc
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDA  170 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  170 (353)
                      ...                                 ...+. +.....+.++.++.++.+..+|..+++.+..+......
T Consensus       146 ~~~---------------------------------~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        146 TKV---------------------------------AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             ccC---------------------------------CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence            110                                 00111 11222467788888999999999999988776532111


Q ss_pred             e-----EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcC--CCCeEEeecCCCcEEEee
Q 018591          171 V-----NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       171 v-----~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d  242 (353)
                      .     .+-...++.++.++.+|.+..+|..+++...........+ ........+..+|  .+..++.++.+|.+..+|
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence            1     1112245677788889999999998887322111000000 0000000111122  245677777899999999


Q ss_pred             ccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591          243 GNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL  322 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l  322 (353)
                      ..+++..|+...  .    ....+...+..++.++.+|.+..+|..+++.......+. + ....+....      +.+|
T Consensus       273 ~~tG~~~W~~~~--~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~-~~~~sp~v~------~g~l  338 (394)
T PRK11138        273 LRSGQIVWKREY--G----SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-H-RLLTAPVLY------NGYL  338 (394)
T ss_pred             CCCCCEEEeecC--C----CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccC-C-CcccCCEEE------CCEE
Confidence            999866655421  1    111234457788888899999999999887433221111 1 112222222      3477


Q ss_pred             EEccCCCeEEEEEcCCCCCcccc
Q 018591          323 YSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       323 ~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      +.++.||.|.+.|..+++.+.+.
T Consensus       339 ~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        339 VVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             EEEeCCCEEEEEECCCCCEEEEE
Confidence            88899999999999998876554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=7.2e-09  Score=84.59  Aligned_cols=298  Identities=9%  Similarity=0.097  Sum_probs=173.9

Q ss_pred             CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe-----cCC-----CcEEEEEc
Q 018591           17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA-----HQD-----SRIRVWKV   83 (353)
Q Consensus        17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-----~~d-----g~i~~w~~   83 (353)
                      .+++..+++ +..++.-+.+..++|++..++..+.+....  .++++.|+  +++|.+-     ..+     -.+++|++
T Consensus        35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            345566665 444444556679999999888655444432  78888887  6666541     122     34779999


Q ss_pred             ccCccceeEEeecccc--------ccceeeeecccceeEeecc-cceeeeeecCCceEEEEEeC----CeEEE-----ec
Q 018591           84 SRSSENVFRLVDTLPT--------TKDYLGKFMKQSNYVQTRR-HHKRLWIEHADSISCLTVYN----GLIYS-----GS  145 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~----~~l~~-----~~  145 (353)
                      +++.. ..........        ......+.....-...... .....-.-|...|+.+.++|    ..+++     .+
T Consensus       113 et~~~-~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG  191 (566)
T KOG2315|consen  113 ETGVQ-RSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG  191 (566)
T ss_pred             cccee-hhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence            88431 1111111111        1111111111111111111 11111124667888888887    34443     35


Q ss_pred             CCCcEEEEEcCCceeeeecc---ccCcceEEEEEeCC---eEEEEc--CC---------CcEEEEeCCCCCcccccceee
Q 018591          146 WDKTLKVWRVADLKCLESIK---AHDDAVNGLVASKG---IVYSAS--AD---------GKIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~---~l~~~~--~d---------g~i~iwd~~~~~~~~~~~~~~  208 (353)
                      .-+.|++|..........+.   .....=..+.|+..   +|+.++  -|         .++++.+++..       ...
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-------s~~  264 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-------SVS  264 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-------eEE
Confidence            56789999876322211110   01111234555322   333332  22         46788887733       234


Q ss_pred             eeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC---CCeEE
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA---DKSIG  283 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg~i~  283 (353)
                      .......+|.++.|+|+++.+++  |-.-..+.+||++..     .+..+........-+.+.|++++.++.   -|.+.
T Consensus       265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mE  339 (566)
T KOG2315|consen  265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDME  339 (566)
T ss_pred             EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCCCCCccceEECCCCCEEEEeecCCCCCceE
Confidence            44444556799999999977654  556778999999875     555555555555666777998887765   47899


Q ss_pred             EEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEcCC
Q 018591          284 IWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWVSK  338 (353)
Q Consensus       284 iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~  338 (353)
                      +||+.+.+   ++..+..-.  -+-..|+||    |++++|++.      |+.++||+...
T Consensus       340 vwDv~n~K---~i~~~~a~~--tt~~eW~Pd----Ge~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  340 VWDVPNRK---LIAKFKAAN--TTVFEWSPD----GEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEeccchh---hccccccCC--ceEEEEcCC----CcEEEEEeccccEEecCCeEEEEecC
Confidence            99999866   565555433  455789999    999999875      78899999764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.39  E-value=1.1e-09  Score=83.46  Aligned_cols=293  Identities=12%  Similarity=0.126  Sum_probs=165.8

Q ss_pred             CceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCcEEEEEcccCccce
Q 018591           17 GSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSRIRVWKVSRSSENV   90 (353)
Q Consensus        17 ~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~   90 (353)
                      +.|.-+.|.   --.|..+..|+.|.+|++...+-...+......+.+++|+  | ..|.+...|-.|.+|.+.+.....
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            456666674   3356667789999999999999999998889999999998  5 456677788899999998875211


Q ss_pred             eEEe------eccccccceeeee-----------------------------------cccceeEeecc--cceeeeeec
Q 018591           91 FRLV------DTLPTTKDYLGKF-----------------------------------MKQSNYVQTRR--HHKRLWIEH  127 (353)
Q Consensus        91 ~~~~------~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~--~~~~~~~~~  127 (353)
                      ..-.      -.+.....+....                                   .++++.+..-.  .+..++.-|
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe  208 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE  208 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence            1100      0111111111000                                   00011111100  011111122


Q ss_pred             -CCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcce--------------------EEEEEeCCeEEEE
Q 018591          128 -ADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV--------------------NGLVASKGIVYSA  184 (353)
Q Consensus       128 -~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--------------------~~i~~~~~~l~~~  184 (353)
                       .-.+..++|+|  +.+++|+.|+.+++.+--+.+...++- |-..+                    .++.|.+.     
T Consensus       209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~-----  282 (447)
T KOG4497|consen  209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT-----  282 (447)
T ss_pred             eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcccccccCCC-----
Confidence             24566666666  666677777777777666666655541 21111                    12222111     


Q ss_pred             cCCCcEEEEeCCCCCcc---c------ccceeeeeccCCceeeEEEEcCCCCeEEeecCC--CcEEEeeccccccceeee
Q 018591          185 SADGKIKAWGKELGKSH---C------HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD--GFVMGWEGNVEIVRWKLA  253 (353)
Q Consensus       185 ~~dg~i~iwd~~~~~~~---~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~  253 (353)
                        |-...+|.......+   .      .++...+....-. +.-++|++|..++++-...  ..+.+||++..+    . 
T Consensus       283 --~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g-~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l-  354 (447)
T KOG4497|consen  283 --DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG-AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----L-  354 (447)
T ss_pred             --ccccCccccchhhhhhhhcceeeecccCCCCCCCcccc-cceeeecCCceEEeeecCCCCceEEEEechhhh----h-
Confidence              111112211100000   0      0011111122222 3779999999998886543  578999998762    2 


Q ss_pred             eeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          254 CETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       254 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                      ...-....+|.++.|+  ...|+.+.....+++|......   .+... +..-.|..+.|.-+    |..++-.+.|...
T Consensus       355 ~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~---~V~vP-~~GF~i~~l~W~~~----g~~i~l~~kDafc  426 (447)
T KOG4497|consen  355 HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR---VVGVP-KKGFNIQKLQWLQP----GEFIVLCGKDAFC  426 (447)
T ss_pred             hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce---EEecC-CCCceeeeEEecCC----CcEEEEEcCCceE
Confidence            2222335577888887  3466666667779999987533   33322 22357999999998    9999999999643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.38  E-value=5.1e-12  Score=105.87  Aligned_cols=285  Identities=17%  Similarity=0.184  Sum_probs=179.0

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCC-ceeeEEecc-CceeeEEEEEe-----CCEEEEecCCCcEEEEEcccCc
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPD-LRMFTKFGH-GDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~-~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      +++.++..+  |+-+|.++.-| +.+-|+.. +.+..-+.+ ..-.|....|+     ...+++.+.. .-.+|++....
T Consensus        25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss  102 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSS  102 (1081)
T ss_pred             CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcCC
Confidence            456666664  88888888766 45556543 333332322 13345566666     3345555544 55689987655


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce-eeee
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK-CLES  163 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~-~~~~  163 (353)
                      ......                             ++.+|...|+.+.|++   ..+++++.|-.+..||+++.. ++..
T Consensus       103 ~~aIef-----------------------------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys  153 (1081)
T KOG0309|consen  103 SNAIEF-----------------------------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS  153 (1081)
T ss_pred             ccceEE-----------------------------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence            332222                             2348999999999998   899999999999999998743 4444


Q ss_pred             ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEEE
Q 018591          164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVMG  240 (353)
Q Consensus       164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i  240 (353)
                      +..-...-..+.|  .+..+++.+....|++||.+.+.    .+...+++|...+ +.++|..- ...+.+.+.||+|+.
T Consensus       154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~s~K~~vs~v-n~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLCSLKGHVSSV-NSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             eecccccCceeeecccCcchhhhccCCceEEEeccCCC----cceEEecccceee-ehHHHhhhhhhhhcccCCCCceee
Confidence            4444455567777  33455556667889999999887    4667777776655 88888753 456889999999999


Q ss_pred             eeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc-------ceEEeccccCCCcCeEEEEe
Q 018591          241 WEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG-------KLCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~h~~~v~~~~~  311 (353)
                      ||.......++...+... ...--+..|  .|.++.---.+..+.+++.++..       ...++..+.||...|....|
T Consensus       229 w~y~kSt~e~~~~vtt~~-piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW  307 (1081)
T KOG0309|consen  229 WDYSKSTTESKRTVTTNF-PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW  307 (1081)
T ss_pred             ecccccccccceeccccC-cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence            998876433332222111 111111111  12222211112244444433221       23478889999999988777


Q ss_pred             ecCCC------CCCeEEEEccCCCeEEEEEcCC
Q 018591          312 SPNAV------GGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       312 ~~~~~------~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      -....      ...-.|+|-+.|..+++|.+.+
T Consensus       308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            64321      1135799999999999998875

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=2.9e-10  Score=96.14  Aligned_cols=332  Identities=15%  Similarity=0.168  Sum_probs=193.0

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--------------CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--------------GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---   65 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--------------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---   65 (353)
                      ..+.|.++++.-|...|+.+.|.              .-+||++...|.|.+||...+..+..+.+|..++..++|-   
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r  121 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR  121 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence            45678899999999999999993              1267888888999999999999999999999999999995   


Q ss_pred             ---CCEEEEecCCCcEEEEEcccCccc--------eeEEeeccccccceeeeecccceeE----------eecccceeee
Q 018591           66 ---GNKVFTAHQDSRIRVWKVSRSSEN--------VFRLVDTLPTTKDYLGKFMKQSNYV----------QTRRHHKRLW  124 (353)
Q Consensus        66 ---~~~l~s~~~dg~i~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  124 (353)
                         ...|++-....++.+|+.++++..        ...+...-|.....+......+..+          ....+..++-
T Consensus       122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~  201 (1062)
T KOG1912|consen  122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT  201 (1062)
T ss_pred             CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence               256777777789999998887621        1111221121111111000000000          0000011111


Q ss_pred             eecCC----------------c---------eEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-
Q 018591          125 IEHAD----------------S---------ISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-  176 (353)
Q Consensus       125 ~~~~~----------------~---------i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-  176 (353)
                      ..|..                .         ...++|+|  +.++.......+.++|++-..++....-..+.+.-+.+ 
T Consensus       202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl  281 (1062)
T KOG1912|consen  202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL  281 (1062)
T ss_pred             cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence            11111                0         01133444  23333334455666666555544444333333333333 


Q ss_pred             ---eCCeEEEEcCCCcEEEE------------------------------------------------------------
Q 018591          177 ---SKGIVYSASADGKIKAW------------------------------------------------------------  193 (353)
Q Consensus       177 ---~~~~l~~~~~dg~i~iw------------------------------------------------------------  193 (353)
                         ..+.+++...||.+.+|                                                            
T Consensus       282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w  361 (1062)
T KOG1912|consen  282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW  361 (1062)
T ss_pred             cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence               11245555555555555                                                            


Q ss_pred             eCCCCCccccc------c--------------------eeeeeccCCceeeEEEE-----------cCCC-------CeE
Q 018591          194 GKELGKSHCHS------L--------------------KGILEGHKDVSLNSVVV-----------SDDG-------KWV  229 (353)
Q Consensus       194 d~~~~~~~~~~------~--------------------~~~~~~~~~~~v~~~~~-----------~~~~-------~~l  229 (353)
                      .+.+++.....      .                    .....+|.... .+...           .|.+       ..+
T Consensus       362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs-~~~~~~p~p~~t~~~~~p~~n~~~~~~pLv  440 (1062)
T KOG1912|consen  362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGS-TCVRMRPMPELTKVENDPGGNTPAGTVPLV  440 (1062)
T ss_pred             hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCc-eeeecccCcccceeecCCCCCccceeeeeE
Confidence            33322210000      0                    00000111111 12111           1222       257


Q ss_pred             EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEE----------ecCCCeEEEEecCCCcceEEecc
Q 018591          230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCS----------GSADKSIGIWKREAFGKLCRVGA  298 (353)
Q Consensus       230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~----------~~~dg~i~iw~~~~~~~~~~~~~  298 (353)
                      +.|...|+|.++|+.++    .....+..|...|.++.|-|. .|++          |+.-+.+.+-|+++|-....-..
T Consensus       441 AvGT~sGTV~vvdvst~----~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l  516 (1062)
T KOG1912|consen  441 AVGTNSGTVDVVDVSTN----AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL  516 (1062)
T ss_pred             EeecCCceEEEEEecch----hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccC
Confidence            88999999999999998    567778889999999999754 3333          33345678889998753322212


Q ss_pred             ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      -+..+.+|+.+..+..    ++||+..-.|.-+.+||+++...+.
T Consensus       517 ~~~despI~~irvS~~----~~yLai~Fr~~plEiwd~kt~~~lr  557 (1062)
T KOG1912|consen  517 QKPDESPIRAIRVSSS----GRYLAILFRREPLEIWDLKTLRMLR  557 (1062)
T ss_pred             CCCCcCcceeeeeccc----CceEEEEecccchHHHhhccchHHH
Confidence            2345679999999999    9999999999999999997665544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=6e-12  Score=114.95  Aligned_cols=188  Identities=16%  Similarity=0.248  Sum_probs=140.3

Q ss_pred             CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591           55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS  132 (353)
Q Consensus        55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  132 (353)
                      +-..|.++.-.  ..+.++|+.||.+++|....++.  +.+..+.                            +. ..|+
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~--v~~~rt~----------------------------g~-s~vt 2255 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ--VVCFRTA----------------------------GN-SRVT 2255 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCe--EEEeecc----------------------------Cc-chhh
Confidence            34455555444  56889999999999999876651  1111111                            23 6778


Q ss_pred             EEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEc---CCCcEEEEeCCCCCccccccee
Q 018591          133 CLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSAS---ADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       133 ~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      .+.|+.  +.+..+..||.+.+|... .++....+.|......+.|-...+++++   .++.+.+||..-...    ...
T Consensus      2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~----~s~ 2330 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPM----NSL 2330 (2439)
T ss_pred             hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcc----cce
Confidence            888877  888889999999999986 6777788889999999998556666654   478899999764431    122


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~  287 (353)
                      .-..|.+.. +++++-|..+.|++|+.+|.|++||++..+    +.+.+..       +. ...++++|+..|.++||++
T Consensus      2331 v~~~H~~ga-T~l~~~P~~qllisggr~G~v~l~D~rqrq----l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2331 VHTCHDGGA-TVLAYAPKHQLLISGGRKGEVCLFDIRQRQ----LRHTFQA-------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             eeeecCCCc-eEEEEcCcceEEEecCCcCcEEEeehHHHH----HHHHhhh-------hh-hhheeeccCcccceEEEEc
Confidence            226777776 999999999999999999999999999873    3333322       22 3678999999999999999


Q ss_pred             CCCc
Q 018591          288 EAFG  291 (353)
Q Consensus       288 ~~~~  291 (353)
                      ....
T Consensus      2398 s~~~ 2401 (2439)
T KOG1064|consen 2398 SEFG 2401 (2439)
T ss_pred             cccc
Confidence            8765

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=1e-10  Score=87.03  Aligned_cols=128  Identities=15%  Similarity=0.214  Sum_probs=86.3

Q ss_pred             cEEEEEcCC-ceeeeeccc-cCcceEEEEEeCC--eE--EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591          149 TLKVWRVAD-LKCLESIKA-HDDAVNGLVASKG--IV--YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       149 ~v~iwd~~~-~~~~~~~~~-~~~~v~~i~~~~~--~l--~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (353)
                      ...+|.++. ......+.- ..++|.+++|+|+  .+  +.|..++.+.+||++..      ....+.  .... +.+.|
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~------~i~~~~--~~~~-n~i~w  108 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK------KIFSFG--TQPR-NTISW  108 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc------EeEeec--CCCc-eEEEE
Confidence            345555532 233444433 3457999999544  44  34456789999999733      333333  3333 88999


Q ss_pred             cCCCCeEEeecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC------CCeEEEEecCC
Q 018591          223 SDDGKWVYGGGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA------DKSIGIWKREA  289 (353)
Q Consensus       223 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iw~~~~  289 (353)
                      +|+|+++++++.   .|.+.+||.+..    +.+...........+++|+|++++++..      |+.++||+...
T Consensus       109 sP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  109 SPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            999999999864   467999999976    4455554445556667778999998874      78899999863

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=3.7e-12  Score=103.50  Aligned_cols=248  Identities=14%  Similarity=0.186  Sum_probs=156.6

Q ss_pred             eEEeccCceeeEEEEE-e-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           49 FTKFGHGDGSVKAVVT-V-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        49 ~~~~~~~~~~v~~~~~-~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      +..+.+|+..|.++.- + .+.+++++.|.+|++|.++.........                         ...-.+..
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------------------aCQfTY~a  782 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------------------ACQFTYQA  782 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------------------eeeeEhhh
Confidence            4566789988988754 3 7889999999999999997654211100                         01223448


Q ss_pred             cCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccc-----cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCC
Q 018591          127 HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA-----HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       127 ~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~  199 (353)
                      |+.+|.++.|..+.-..++.||-|.+||.--++++..+..     ..+.|.++-- ... .++.++...+++++|.+..+
T Consensus       783 Hkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce  862 (1034)
T KOG4190|consen  783 HKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE  862 (1034)
T ss_pred             ccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence            9999999999884444556689999999877777664421     1233444433 222 34444788999999999877


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEE-EEEcCcEEEEecC
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLC-VCLVGEFLCSGSA  278 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~~  278 (353)
                      ....-....-.+... .+.+++..+.|+.++++-.+|.|.+.|.+++.    .+.....-.-.... .+|+.+.|+....
T Consensus       863 ~~~E~kVcna~~Pna-~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaapsdq~L~~sal  937 (1034)
T KOG4190|consen  863 WTCELKVCNAPGPNA-LTRAIAVADKGNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAAPSDQALAQSAL  937 (1034)
T ss_pred             ceeeEEeccCCCCch-heeEEEeccCcchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcCchhHHHHhhcc
Confidence            221111111122323 34899999999999999999999999999983    33322222222222 2456778888888


Q ss_pred             CCeEEE-EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          279 DKSIGI-WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       279 dg~i~i-w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      |.++.+ |...++..   ....+....+.   .|....   |.-|+++.....+.+|.
T Consensus       938 dHslaVnWhaldgim---h~q~kpppepa---hflqsv---gpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  938 DHSLAVNWHALDGIM---HLQDKPPPEPA---HFLQSV---GPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             cceeEeeehhcCCee---eeccCCCCcch---hhhhcc---CceeEEeccCcEEEEEe
Confidence            899988 87665431   11112111111   111110   56677777777777774

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=1.3e-10  Score=87.01  Aligned_cols=185  Identities=12%  Similarity=0.086  Sum_probs=122.2

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceee--EEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMF--TKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT  100 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  100 (353)
                      +..++++-.+|.+.+-+.....+.  +.++.|.-.++...|+   ++.+++|+.|+.+..||++.+....+..       
T Consensus       133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n-------  205 (339)
T KOG0280|consen  133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN-------  205 (339)
T ss_pred             CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec-------
Confidence            778999999999997765555444  4789999999999997   7899999999999999998443111110       


Q ss_pred             cceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC-ceeeeeccccCcceEEEEE
Q 018591          101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAVNGLVA  176 (353)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~  176 (353)
                                             -.-|...|.+|.-+|   .++++|+.|-.|++||.++ ++++..-. -.+.|+.+..
T Consensus       206 -----------------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~  261 (339)
T KOG0280|consen  206 -----------------------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH  261 (339)
T ss_pred             -----------------------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEe
Confidence                                   015888999999888   6999999999999999985 55555432 3588999988


Q ss_pred             eCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEE-Eee
Q 018591          177 SKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVM-GWE  242 (353)
Q Consensus       177 ~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-i~d  242 (353)
                      .+.   .++.++.-.-.++-+...+.............|.+.. ..-.|.....++++++ .|..++ +|-
T Consensus       262 ~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~-YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  262 HPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLC-YGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             cchhhhHHHHHHHhcCceEEEecccccchheeeecccccccee-eccccccccceeeeeeccccceeeeee
Confidence            554   3344444445777777766532111223333343322 3333332334566643 344433 443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=8.2e-10  Score=93.40  Aligned_cols=193  Identities=11%  Similarity=-0.010  Sum_probs=115.7

Q ss_pred             ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCCcEEEEeC--
Q 018591          126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADGKIKAWGK--  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg~i~iwd~--  195 (353)
                      .+...+.+..|+|  +.|+..+.+   ..|.+||+.+++... +....+.+.+..|+++  .++ +.+.+|...+|.+  
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            4667788999998  566665532   359999998876543 2233455567888443  454 5677887666654  


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                      ..+.      ...+..+... .....|+|||+.++..+ .+|...+|.+.......... ...+.......++++|++|+
T Consensus       272 ~~~~------~~~lt~~~~~-~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        272 DGSG------LRRLTQSSGI-DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             CCCC------cEECCCCCCC-CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEE
Confidence            4333      2233333332 36788999999887654 35666777654221111111 12222222346778899988


Q ss_pred             EecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEc
Q 018591          275 SGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWV  336 (353)
Q Consensus       275 ~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~  336 (353)
                      ..+.++   .|.+||+.+++.. .+   .. ........|+|+    ++.|+.++.++   .+.+-++
T Consensus       344 ~~s~~~g~~~I~v~d~~~g~~~-~l---t~-~~~~~~p~~spd----g~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        344 YISRVGGAFKLYVQDLATGQVT-AL---TD-TTRDESPSFAPN----GRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             EEEccCCcEEEEEEECCCCCeE-Ec---cC-CCCccCceECCC----CCEEEEEEecCCCEEEEEEEC
Confidence            766544   6999999876522 22   21 123467899999    88777766543   3444455

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=5.7e-10  Score=91.32  Aligned_cols=187  Identities=20%  Similarity=0.259  Sum_probs=139.7

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeecccc---CcceEEEEE------e----------------CCeEEEEcCCCcEEEE
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAH---DDAVNGLVA------S----------------KGIVYSASADGKIKAW  193 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~------~----------------~~~l~~~~~dg~i~iw  193 (353)
                      .+++....||.+++||...++....+...   .+..++..|      +                ...++-|...|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            68899999999999999988877766431   233333333      1                1178888999999999


Q ss_pred             eCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEcC
Q 018591          194 GKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVG  270 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~  270 (353)
                      +...++     +...+. +.....|.++.++.+-..|.+++.|+.+..|+....    ...+........+  .++++++
T Consensus        86 s~~~g~-----it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   86 SVAGGE-----ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             EecCCe-----EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCCC
Confidence            999987     555555 333444589999999899999999999999999887    4555555544444  5556677


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC-Ce-EEEEccCCCeEEEEEcCCC
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG-GF-LLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~~-~l~s~~~dg~i~iw~~~~~  339 (353)
                      ..+++++  +.|.+||+++.+   .+..+.||.++|+++.|..+-.+. |. +|.+...+.-+.+|-+...
T Consensus       157 ~~l~~as--~~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  157 KILLTAS--RQIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CEEEecc--ceEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            7888875  579999999988   788899999999999998762211 34 4555556677889987764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=2.8e-09  Score=90.62  Aligned_cols=207  Identities=11%  Similarity=0.015  Sum_probs=122.4

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      ..|.++|..... ...+..+...+....|+  +++|+.+..+   ..|++||+.++....   +                
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~----------------  229 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---V----------------  229 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---e----------------
Confidence            368888875444 34444455567777787  7777766543   479999998764211   1                


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYS  183 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~  183 (353)
                                    ..+...+.++.|+|  +.|+ +.+.++  .|++||+.+++.. .+..+........|.+  ..++.
T Consensus       230 --------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~  294 (417)
T TIGR02800       230 --------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAF  294 (417)
T ss_pred             --------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEE
Confidence                          12334455678888  4454 444444  5888998876543 3334444445567733  35554


Q ss_pred             EcC-CC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeecc
Q 018591          184 ASA-DG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       184 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      .+. ++  .|.++|+.+++     . ..+..+.... ....|+|++++++.++.++   .|.+||+.++..  .....  
T Consensus       295 ~s~~~g~~~iy~~d~~~~~-----~-~~l~~~~~~~-~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~--  363 (417)
T TIGR02800       295 TSDRGGSPQIYMMDADGGE-----V-RRLTFRGGYN-ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTD--  363 (417)
T ss_pred             EECCCCCceEEEEECCCCC-----E-EEeecCCCCc-cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccC--
Confidence            443 33  57777877664     2 2222233333 6789999999998887765   788888876521  11111  


Q ss_pred             ccceeEEEEEEcCcEEEEecCCC---eEEEEecC
Q 018591          258 AHEMAVLCVCLVGEFLCSGSADK---SIGIWKRE  288 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~dg---~i~iw~~~  288 (353)
                      .....-..+++++++|+..+.++   .+++.+..
T Consensus       364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       364 TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence            11112236777888777766543   45555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.28  E-value=2.6e-08  Score=77.80  Aligned_cols=216  Identities=18%  Similarity=0.150  Sum_probs=136.3

Q ss_pred             CCCcEEEEeCCCceeeEEecc---CceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           34 QGKDIIVWQQPDLRMFTKFGH---GDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        34 ~dg~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      .+|+|..||..+|+.+.....   ....+......++.+++++.++.|..||..+++.......   +.           
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~-----------   66 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PG-----------   66 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SS-----------
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---cc-----------
Confidence            368999999999999988754   2222222223688888889999999999988862111111   00           


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec-cccC-----cceEEEEEeCCeEEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI-KAHD-----DAVNGLVASKGIVYSA  184 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~-----~~v~~i~~~~~~l~~~  184 (353)
                                     .....   .....+.+++++.++.++.+|..+++.+... ....     .......+.++.++.+
T Consensus        67 ---------------~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (238)
T PF13360_consen   67 ---------------PISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG  128 (238)
T ss_dssp             ---------------CGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE
T ss_pred             ---------------cccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEE
Confidence                           00011   2334477777878899999999999998874 3221     1223344467788888


Q ss_pred             cCCCcEEEEeCCCCCcccccceeeeeccCCce---------eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeee
Q 018591          185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVS---------LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACE  255 (353)
Q Consensus       185 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  255 (353)
                      ..++.|..+|.++++     ............         +..-....++ .++.+..++.+..+|+.++...+.    
T Consensus       129 ~~~g~l~~~d~~tG~-----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~----  198 (238)
T PF13360_consen  129 TSSGKLVALDPKTGK-----LLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWS----  198 (238)
T ss_dssp             ETCSEEEEEETTTTE-----EEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEE----
T ss_pred             eccCcEEEEecCCCc-----EEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEE----
Confidence            889999999999998     333333322110         0112222234 777777777644449999853331    


Q ss_pred             ccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591          256 TKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       256 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      .. ..........++..|+.++.++.|..||+++++.
T Consensus       199 ~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  199 KP-ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EC-SS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             ec-CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            11 1112222556688888888999999999999874

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=1.2e-10  Score=87.93  Aligned_cols=264  Identities=16%  Similarity=0.299  Sum_probs=154.6

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----eeEEeccC------------ceeeEEEEEe----CCEEEEe
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-----MFTKFGHG------------DGSVKAVVTV----GNKVFTA   72 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~------------~~~v~~~~~~----~~~l~s~   72 (353)
                      .+.|+++.|+  |.||++|...|.|.++.-+...     ....+..|            ...|..+.|-    .+.++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4679999997  8999999999999999754322     22334444            3467778775    3456777


Q ss_pred             cCCCcEEEEEcccCccceeEE---eec--cccc-------cceeeeecccceeEeecccceeee-eecCCceEEEEEeC-
Q 018591           73 HQDSRIRVWKVSRSSENVFRL---VDT--LPTT-------KDYLGKFMKQSNYVQTRRHHKRLW-IEHADSISCLTVYN-  138 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~~~---~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-  138 (353)
                      +.|.+|++|.+.......+..   ...  .+-.       .....+....  .......+.+++ ..|.-.|+++.++. 
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~h--d~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEH--DEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccccc--ceEEEeccceeccccceeEeeeeeecCc
Confidence            788999999987653211110   000  0000       0001111111  112222334444 57888999999998 


Q ss_pred             CeEEEecCCCcEEEEEcCCce---eeeecccc-----CcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          139 GLIYSGSWDKTLKVWRVADLK---CLESIKAH-----DDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~-----~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      ...+..+.|=.|.+|+++-..   .+..++.|     ..-|++..|++   +.+.-.+..|.|++-|++.... +.....
T Consensus       184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al-cdn~~k  262 (460)
T COG5170         184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL-CDNSKK  262 (460)
T ss_pred             hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh-ccCchh
Confidence            444555567889999986422   12223333     24566777743   3677778889999999985431 000001


Q ss_pred             e------------eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc------------ceeE
Q 018591          208 I------------LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH------------EMAV  263 (353)
Q Consensus       208 ~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------~~~v  263 (353)
                      .            +.+-... |..+.|+++|+++++-+. -++++||.+..+...   .+.+.|            ...+
T Consensus       263 lfe~~~D~v~~~ff~eivsS-ISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi---kTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSS-ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI---KTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             hhhhccCcccchhHHHHhhh-hcceEEcCCCcEEEEecc-ceEEEEecccccCCc---eeechHHHHHHHHHhhhhccce
Confidence            1            1111122 478999999999887654 479999998764322   222111            1111


Q ss_pred             ---EEEEE--cCcEEEEecCCCeEEEEec
Q 018591          264 ---LCVCL--VGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       264 ---~~~~~--~~~~l~~~~~dg~i~iw~~  287 (353)
                         ..+.+  +...+.+|+..+..-+|-.
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeecc
Confidence               22333  3567777777777666653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.26  E-value=2.6e-09  Score=79.18  Aligned_cols=197  Identities=12%  Similarity=-0.024  Sum_probs=130.9

Q ss_pred             CeEEEecCCCcEEEEEcCCceee-eeccccCcceEE---EEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCL-ESIKAHDDAVNG---LVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~---i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      .+|+.|+..|...+|...+.+.. .....|...|+-   .+-....+..++.|.++++.++..+.     .........-
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-----~~~~~h~~~~  159 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-----NKFAVHNQNL  159 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-----ccceeecccc
Confidence            68999999999999999865433 222333332221   12233367778888999988887654     2222222211


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc--eeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE--MAVLCVCLVGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                       .+.+++++++++++++.+....|..|.+.....-... .......  +-..+++-....+|++..||++.|||++....
T Consensus       160 -~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  160 -TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             -ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence             2489999999999999999999999998775322111 1122222  33344444577999999999999999997664


Q ss_pred             eEEe--ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          293 LCRV--GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       293 ~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +...  ..-..|.+.++.+.|+|...  -.+|.-.-.=+.+.+-|+++....+.
T Consensus       238 pm~~~sstrp~hnGa~R~c~Fsl~g~--lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  238 PMAEISSTRPHHNGAFRVCRFSLYGL--LDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             chhhhcccCCCCCCceEEEEecCCCc--ceEEEEecCcceEEEEEcccCceeeE
Confidence            3222  12345899999999998522  34666665667899999988765543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=3.9e-08  Score=79.57  Aligned_cols=298  Identities=13%  Similarity=0.124  Sum_probs=179.2

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC--------------
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS--------------   76 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--------------   76 (353)
                      -.-++..++++  |.+|++.... .|.+|..+.+..+..+.+  ..|..+.|+  +.+|.+-+..+              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            34477788887  8888887775 599999888877766665  356666666  78888765433              


Q ss_pred             -cEEEEEcccCccceeEEeeccccccce-----eeeecccceeEeeccc-ceeeee------------ecCCceEEEEEe
Q 018591           77 -RIRVWKVSRSSENVFRLVDTLPTTKDY-----LGKFMKQSNYVQTRRH-HKRLWI------------EHADSISCLTVY  137 (353)
Q Consensus        77 -~i~~w~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~i~~~~~~  137 (353)
                       .+.+||+.++.     ++..++.....     +..+...+.+...-.. ...+..            -....|....++
T Consensus       108 n~~~vwd~~sg~-----iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsis  182 (561)
T COG5354         108 NNVFVWDIASGM-----IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSIS  182 (561)
T ss_pred             CceeEEeccCce-----eEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEec
Confidence             49999998876     44333332221     2222222222211100 001100            012456777777


Q ss_pred             C----CeEEE-----ecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEE-E----------cCCCcEEEEeC
Q 018591          138 N----GLIYS-----GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYS-A----------SADGKIKAWGK  195 (353)
Q Consensus       138 ~----~~l~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~-~----------~~dg~i~iwd~  195 (353)
                      |    ..|+.     ...++.+++|.+..+..+.+-.--...=..+.|+  +++++. .          -.+..+.++++
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~  262 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI  262 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence            7    22332     4567889999987665554432112222334441  221111 0          12356888888


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL  273 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  273 (353)
                      +...     +. ....-.+ +|...+|.|.++.+++  |-.+..+.++|++.+     +...+......-..++++++++
T Consensus       263 ~e~~-----i~-V~~~~~~-pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~rNT~~fsp~~r~i  330 (561)
T COG5354         263 TERS-----IP-VEKDLKD-PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQKRNTIFFSPHERYI  330 (561)
T ss_pred             cccc-----cc-eeccccc-cceeeeecccCCceeEEecccccceeecccccc-----eEEecCCcccccccccCcccEE
Confidence            7544     22 2223333 4599999998877655  457888999999886     3333444444556677788888


Q ss_pred             EEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc------CCCeEEEEEcCCCC
Q 018591          274 CSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS------LDKSLRVWWVSKQS  340 (353)
Q Consensus       274 ~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~------~dg~i~iw~~~~~~  340 (353)
                      +.++-|   |.+.+||.....  ..+..+.+-.  .+-+.|+|+    ++++.+..      .|..|+||++....
T Consensus       331 l~agF~nl~gni~i~~~~~rf--~~~~~~~~~n--~s~~~wspd----~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRF--KVAGAFNGLN--TSYCDWSPD----GQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             EEecCCccccceEEeccCCce--EEEEEeecCC--ceEeeccCC----ceEEEecCCCcccccCcceEEEEecCch
Confidence            886654   789999987643  2343444432  455689999    88888775      37889999987654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1.2e-08  Score=86.80  Aligned_cols=228  Identities=11%  Similarity=0.033  Sum_probs=126.5

Q ss_pred             cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-CC--cEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591           37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DS--RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS  111 (353)
Q Consensus        37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (353)
                      .|.++|...... +.+..+...+....|+  ++.|+..+. ++  .|.+||+.+++..   .+..               
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---~lt~---------------  259 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---KVTS---------------  259 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---EecC---------------
Confidence            677778655433 3444456677778887  777776543 33  5788888766421   1111               


Q ss_pred             eeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCc--EEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-E
Q 018591          112 NYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKT--LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-S  183 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~  183 (353)
                                     .........|+|  +.|+ +.+.+|.  |+++|+.+++.. .+..+........|+++  .++ +
T Consensus       260 ---------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~  323 (448)
T PRK04792        260 ---------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFT  323 (448)
T ss_pred             ---------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEE
Confidence                           111223567888  4454 4566664  778888776543 34444555667788433  444 4


Q ss_pred             EcCCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccc
Q 018591          184 ASADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKA  258 (353)
Q Consensus       184 ~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~  258 (353)
                      ...++  .|.++|+.+++     ... +....... ...+|+|||++++..+. ++  .|.++|+.++..  .....  .
T Consensus       324 s~~~g~~~Iy~~dl~~g~-----~~~-Lt~~g~~~-~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~--~  392 (448)
T PRK04792        324 SERGGKPQIYRVNLASGK-----VSR-LTFEGEQN-LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTS--T  392 (448)
T ss_pred             ECCCCCceEEEEECCCCC-----EEE-EecCCCCC-cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccC--C
Confidence            43344  46666777665     222 21111222 45789999998877654 34  355567766532  11111  1


Q ss_pred             cceeEEEEEEcCcEEEEecC-CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          259 HEMAVLCVCLVGEFLCSGSA-DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       259 ~~~~v~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ....-..++++|+.|+.... ++  .+++++.+ ++.   ...+..+.+.+...+|+|-
T Consensus       393 ~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~---~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        393 RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRF---KARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCc---eEECcCCCCCcCCCccCCC
Confidence            11122367788887765443 33  36777764 332   2334445566778888873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1.8e-08  Score=85.81  Aligned_cols=228  Identities=14%  Similarity=0.051  Sum_probs=131.8

Q ss_pred             cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---CcEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591           37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS  111 (353)
Q Consensus        37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (353)
                      .|.++|...+.. +.+..+...+....|+  ++.|+..+.+   ..|.+|+++++....   +.                
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~----------------  239 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---IT----------------  239 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---cc----------------
Confidence            488888765544 4444556678888887  7777765533   368888987765211   11                


Q ss_pred             eeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEE
Q 018591          112 NYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSA  184 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~  184 (353)
                                    ...+.+....|+|  +.|+ +...+|  .|++||+.+++.. .+..+........|+++  .++..
T Consensus       240 --------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~  304 (430)
T PRK00178        240 --------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFT  304 (430)
T ss_pred             --------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEE
Confidence                          1222334578888  4554 444455  6888899876644 34445555566778433  44443


Q ss_pred             c-CCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-C--cEEEeeccccccceeeeeeccc
Q 018591          185 S-ADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-G--FVMGWEGNVEIVRWKLACETKA  258 (353)
Q Consensus       185 ~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~  258 (353)
                      + .+|  .|.++|+.+++     ..... ...... ....|+|+++.++....+ +  .|.++|+.++..  ......  
T Consensus       305 s~~~g~~~iy~~d~~~g~-----~~~lt-~~~~~~-~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~~--  373 (430)
T PRK00178        305 SDRGGKPQIYKVNVNGGR-----AERVT-FVGNYN-ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTDT--  373 (430)
T ss_pred             ECCCCCceEEEEECCCCC-----EEEee-cCCCCc-cceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccCC--
Confidence            3 343  57777877665     22211 111112 457899999998876543 3  477888877632  121111  


Q ss_pred             cceeEEEEEEcCcEEEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          259 HEMAVLCVCLVGEFLCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       259 ~~~~v~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ....-..++++|+.++..+.+   ..+.+++.....    ...+..+.+.+...+|+|-
T Consensus       374 ~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~----~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        374 SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV----RLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc----eEECcCCCCCcCCCccCCC
Confidence            112223678888877765543   356777775432    1223344566777888874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=4.1e-09  Score=88.78  Aligned_cols=274  Identities=12%  Similarity=0.068  Sum_probs=168.4

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCCce---------------eeEEeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLR---------------MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      ....|++|+  ..++|.|+.||.++|-.+.+..               .-+++++|.+.|.-+.|+  .+.|-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            467899997  7799999999999999865421               235678999999999998  667889999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      |.+|-+-.++     -....-+                         ....+.|.+++|+.  ..+.....||.|.+=.+
T Consensus        95 IiVWmlykgs-----W~EEMiN-------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   95 IIVWMLYKGS-----WCEEMIN-------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             EEEEeeeccc-----HHHHHhh-------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            9999987654     1111100                         03455677888876  67777778887777665


Q ss_pred             CCceee-eeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeec-----cCCceeeEEEE-----
Q 018591          156 ADLKCL-ESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEG-----HKDVSLNSVVV-----  222 (353)
Q Consensus       156 ~~~~~~-~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~-----  222 (353)
                      +..+.- +.++  ......+.|+++  .++.+-..|.+.+||....-...........+     ..+..+..+.|     
T Consensus       145 dGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~  222 (1189)
T KOG2041|consen  145 DGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY  222 (1189)
T ss_pred             ccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence            432211 1222  223346667444  56666778999999976442111111111100     00011233444     


Q ss_pred             ---cCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCC---------CeEEEEecC
Q 018591          223 ---SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSAD---------KSIGIWKRE  288 (353)
Q Consensus       223 ---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---------g~i~iw~~~  288 (353)
                         -|+...++++..+|.+.+-.-.+..   .+....  ....+....|+  |..|++++.+         +.|.+|..-
T Consensus       223 ~~v~pdrP~lavcy~nGr~QiMR~eND~---~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  223 QPVPPDRPRLAVCYANGRMQIMRSENDP---EPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY  297 (1189)
T ss_pred             ccCCCCCCEEEEEEcCceehhhhhcCCC---CCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence               3577889999999988886554432   111111  12445555554  8888888764         356666543


Q ss_pred             CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      . +   .+.+++-....|++++|-..    |-.++.+ .|+.|.+=++
T Consensus       298 G-~---i~gtlkvpg~~It~lsWEg~----gLriA~A-vdsfiyfanI  336 (1189)
T KOG2041|consen  298 G-H---IVGTLKVPGSCITGLSWEGT----GLRIAIA-VDSFIYFANI  336 (1189)
T ss_pred             h-h---heEEEecCCceeeeeEEcCC----ceEEEEE-ecceEEEEee
Confidence            2 2   34555656678999998876    5555544 3455544433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.22  E-value=3.2e-08  Score=77.29  Aligned_cols=213  Identities=19%  Similarity=0.164  Sum_probs=134.5

Q ss_pred             CCCCceeeeeeCc--cCceEEEEE-CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591            3 CKSHRSLAVLSGH--VGSVSSLAL-CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR   79 (353)
Q Consensus         3 ~~~~~~~~~l~~h--~~~v~~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~   79 (353)
                      .++|+.+....--  .....+..+ +++.+++++.++.|..||..+|+.+..+.............++.++.++.++.+.
T Consensus        10 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~   89 (238)
T PF13360_consen   10 PRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLY   89 (238)
T ss_dssp             TTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEE
T ss_pred             CCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeE
Confidence            4577777777531  122222233 6778888899999999999999999887653222222345588888888888999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      .+|..+++..........+.                          ..........+..+.++++..++.|..+|+++|+
T Consensus        90 ~~d~~tG~~~W~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   90 ALDAKTGKVLWSIYLTSSPP--------------------------AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             EEETTTSCEEEEEEE-SSCT--------------------------CSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             ecccCCcceeeeeccccccc--------------------------cccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            99988887321111111000                          0001122333446788888889999999999999


Q ss_pred             eeeeccccCcc-----------eEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          160 CLESIKAHDDA-----------VNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       160 ~~~~~~~~~~~-----------v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      .+.........           ...+.+.++.++.++.++.+.-+|+.+++     ..-  ....... .. ....++..
T Consensus       144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~-----~~w--~~~~~~~-~~-~~~~~~~~  214 (238)
T PF13360_consen  144 LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGE-----KLW--SKPISGI-YS-LPSVDGGT  214 (238)
T ss_dssp             EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTE-----EEE--EECSS-E-CE-CEECCCTE
T ss_pred             EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCC-----EEE--EecCCCc-cC-CceeeCCE
Confidence            98777553322           12333355688888888864444999886     222  2111111 22 13466778


Q ss_pred             EEeecCCCcEEEeeccccccce
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRW  250 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~  250 (353)
                      ++.++.++.+..||+++++..|
T Consensus       215 l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  215 LYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             EEEEETTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCEEEEEECCCCCEEe
Confidence            8888899999999999985444

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.21  E-value=1.1e-08  Score=87.10  Aligned_cols=192  Identities=15%  Similarity=0.078  Sum_probs=115.4

Q ss_pred             ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCC--cEEEEeC
Q 018591          126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADG--KIKAWGK  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg--~i~iwd~  195 (353)
                      .+...+....|+|  +.++.+..+   ..|++||+.+++.... ..+...+.++.|++ + .+ ++.+.++  .|++||+
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            4555677888988  666665543   4799999988754432 23455566788833 3 44 4445444  5888898


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      .++.     . ..+..+.... ....|+|+++.|+..+. ++  .|.++|+..+..  .. ............+++++++
T Consensus       266 ~~~~-----~-~~l~~~~~~~-~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~-l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       266 DGKQ-----L-TRLTNGPGID-TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV--RR-LTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             CCCC-----E-EECCCCCCCC-CCEEECCCCCEEEEEECCCCCceEEEEECCCCCE--EE-eecCCCCccCeEECCCCCE
Confidence            8765     2 2222332222 56789999998876543 33  577777765521  11 1112222233456677888


Q ss_pred             EEEecCCC---eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEcC
Q 018591          273 LCSGSADK---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWVS  337 (353)
Q Consensus       273 l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~  337 (353)
                      ++..+.++   .|.+||+.++.. ..+   ... .......|+|+    ++.|+..+.++   .+.+.+..
T Consensus       336 i~~~~~~~~~~~i~~~d~~~~~~-~~l---~~~-~~~~~p~~spd----g~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       336 IAFVHREGGGFNIAVMDLDGGGE-RVL---TDT-GLDESPSFAPN----GRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             EEEEEccCCceEEEEEeCCCCCe-EEc---cCC-CCCCCceECCC----CCEEEEEEeCCCcEEEEEEECC
Confidence            88877765   789999887432 222   211 22345689999    88777776654   35555544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.21  E-value=4.5e-10  Score=84.97  Aligned_cols=257  Identities=14%  Similarity=0.192  Sum_probs=153.6

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      ...|+++.|+  |.+|++|...|.|.++.-+....-.++....+......+       .|+..        ..-...|..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EF-------DYLkS--------leieEKin~   90 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEF-------DYLKS--------LEIEEKINA   90 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccch-------hhhhh--------ccHHHHhhh
Confidence            4678999998  899999999999999986554322222222221110000       00000        023345777


Q ss_pred             EEEeC----CeEEEecCCCcEEEEEcCCce-------------------ee-----------------------eec-cc
Q 018591          134 LTVYN----GLIYSGSWDKTLKVWRVADLK-------------------CL-----------------------ESI-KA  166 (353)
Q Consensus       134 ~~~~~----~~l~~~~~dg~v~iwd~~~~~-------------------~~-----------------------~~~-~~  166 (353)
                      +.|..    ..++..+.|.+|++|.+....                   ++                       +.+ ..
T Consensus        91 I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa  170 (460)
T COG5170          91 IEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA  170 (460)
T ss_pred             eeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence            77765    678888899999999875320                   00                       001 24


Q ss_pred             cCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC----CceeeEEEEcCC-CCeEEeecCCCcEEE
Q 018591          167 HDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK----DVSLNSVVVSDD-GKWVYGGGSDGFVMG  240 (353)
Q Consensus       167 ~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~-~~~l~~~~~dg~i~i  240 (353)
                      |.-.++++.+ ++...+..+.|-.|.+|++.-... ...+ .-.+.|.    ..+|++..|+|. ...+.-.+..|.|++
T Consensus       171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~-sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDG-SFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             ceeEeeeeeecCchheeeeccceeeeeccccccCC-ceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            6667888888 444555566788899999875431 1111 1122222    234688999995 467777888999999


Q ss_pred             eeccccccceeeee------------eccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCC---
Q 018591          241 WEGNVEIVRWKLAC------------ETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE---  303 (353)
Q Consensus       241 ~d~~~~~~~~~~~~------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~---  303 (353)
                      -|++..........            -+......+..+.+  +|+++++-+. -+|.|||++..+.  ++.++.-|.   
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~--pikTi~~h~~l~  325 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN--PIKTIPMHCDLM  325 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC--CceeechHHHHH
Confidence            99985421111100            01112234444544  4778877655 5799999987665  333333332   


Q ss_pred             ---------cCe---EEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          304 ---------GPV---KCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       304 ---------~~v---~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                               ..|   ..+.|+-|    .+.+++|+..+...++-+
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd----~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGD----DKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCC----cccccccccccceeeecc
Confidence                     233   34677777    778888888877777763

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.21  E-value=1.4e-08  Score=75.42  Aligned_cols=269  Identities=7%  Similarity=-0.043  Sum_probs=162.5

Q ss_pred             eCCCcEEEEeCCCce--eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           33 SQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        33 ~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      +....|-+|+.-+..  .+....+-+-.-.++.-...+|+.|+..|.+.+|...+.+.....+-                
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd----------------  112 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD----------------  112 (344)
T ss_pred             cceeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeec----------------
Confidence            344567788765443  23322221111111222256899999999999999987763222221                


Q ss_pred             ceeEeecccceeeeeecCCceE---EEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEc
Q 018591          111 SNYVQTRRHHKRLWIEHADSIS---CLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSAS  185 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~  185 (353)
                                     .|...|+   -.+-+.-.+..++.|.++++.+++-+..........-.+.++++  .+.++++.+
T Consensus       113 ---------------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg  177 (344)
T KOG4532|consen  113 ---------------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG  177 (344)
T ss_pred             ---------------ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec
Confidence                           1222221   11222245667788888888887543322222111123677777  344888888


Q ss_pred             CCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce-eeeeeccccceeE
Q 018591          186 ADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW-KLACETKAHEMAV  263 (353)
Q Consensus       186 ~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v  263 (353)
                      ....|..|.+......   ....... ..+.. -+..|+.....+|++..||.+.|||++...... ......+.|.+.+
T Consensus       178 ds~~Vf~y~id~~sey---~~~~~~a~t~D~g-F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~  253 (344)
T KOG4532|consen  178 DSRRVFRYAIDDESEY---IENIYEAPTSDHG-FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF  253 (344)
T ss_pred             CCCcceEEEeCCccce---eeeeEecccCCCc-eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence            8999999998766522   2222222 22333 778899999999999999999999998754332 2333344577888


Q ss_pred             EEEEEc----CcEEEEecCCCeEEEEecCCCcceEEecccc----CCC-cCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          264 LCVCLV----GEFLCSGSADKSIGIWKREAFGKLCRVGAIT----GHE-GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       264 ~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~h~-~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      ..+.++    -.+|+..-.-+.+.+-|++++...+.+....    .|. ..|..-.|+.+    +.-..+.+++ .+.=|
T Consensus       254 R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~----n~s~~v~~e~-~~ae~  328 (344)
T KOG4532|consen  254 RVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE----NESNDVKNEL-QGAEY  328 (344)
T ss_pred             EEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC----Ccccccccch-hhhee
Confidence            777776    2356666666789999999987655543322    233 33777788877    6666666655 35566


Q ss_pred             EcCCCCC
Q 018591          335 WVSKQSS  341 (353)
Q Consensus       335 ~~~~~~~  341 (353)
                      ++.+...
T Consensus       329 ni~srsR  335 (344)
T KOG4532|consen  329 NILSRSR  335 (344)
T ss_pred             eccccce
Confidence            6665443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=6.9e-10  Score=93.28  Aligned_cols=241  Identities=12%  Similarity=0.054  Sum_probs=156.1

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      .....++.|+  .+++++|+.||.+++-.+.+........-  +..          .     ....-.+.+.||...|.-
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa----------~-----snLsmNQtLeGH~~sV~v   76 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAA----------A-----SNLSMNQTLEGHNASVMV   76 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--ccc----------c-----cccchhhhhccCcceEEE
Confidence            4567899998  78999999999999999887642111100  000          0     001123455699999999


Q ss_pred             EEEeC--CeEEEecCCCcEEEEEcCCceeeeecc--ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIK--AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      +.|+.  +.|-+...+|.|.+|-+-.+.-...+-  ...+-|.+++|  .+..+...-.||.|.+=.++..+.    .-.
T Consensus        77 vTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI----wgK  152 (1189)
T KOG2041|consen   77 VTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI----WGK  152 (1189)
T ss_pred             EEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee----cch
Confidence            99998  788899999999999987765444332  23556777887  333666666677666655544330    111


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-ee--e----eeeccccceeEEEEE----------EcC
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-WK--L----ACETKAHEMAVLCVC----------LVG  270 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~--~----~~~~~~~~~~v~~~~----------~~~  270 (353)
                      .+++..   ...+.|++|.+.+..+-.+|.+++||.+.+-.. .+  +    ...+......+..+.          |+.
T Consensus       153 eLkg~~---l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr  229 (1189)
T KOG2041|consen  153 ELKGQL---LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR  229 (1189)
T ss_pred             hcchhe---ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence            222222   257889999999999999999999998764110 00  0    001111111122333          345


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                      ..|+++..+|.+.|..-.+...+..+.    -.-.|....|+++    |..|+.++.|
T Consensus       230 P~lavcy~nGr~QiMR~eND~~Pvv~d----tgm~~vgakWnh~----G~vLAvcG~~  279 (1189)
T KOG2041|consen  230 PRLAVCYANGRMQIMRSENDPEPVVVD----TGMKIVGAKWNHN----GAVLAVCGND  279 (1189)
T ss_pred             CEEEEEEcCceehhhhhcCCCCCeEEe----cccEeecceecCC----CcEEEEccCc
Confidence            689999999999998776655433322    1246889999999    9999999875

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.19  E-value=1.3e-07  Score=76.11  Aligned_cols=165  Identities=13%  Similarity=0.109  Sum_probs=117.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC-cEEEEEcccCccceeEEeeccccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS-RIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      |++++..|. |...+.+...+-.++.  +|.+.|.-..+.  ++.++.|..|| .+-++|.++++.              
T Consensus       332 Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--------------  394 (668)
T COG4946         332 GDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--------------  394 (668)
T ss_pred             CcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE--------------
Confidence            888888887 7888887666555543  345556665554  67889999999 899999988762              


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-  179 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-  179 (353)
                                         ..+.+.-+.|.++..++  ..++++.....+.+.|++++.....-+...+-|+.+.|+++ 
T Consensus       395 -------------------kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns  455 (668)
T COG4946         395 -------------------KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS  455 (668)
T ss_pred             -------------------EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc
Confidence                               22225567888999998  67888888889999999998876665666788999999555 


Q ss_pred             -eEEEEcCCC----cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591          180 -IVYSASADG----KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       180 -~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                       +++-+--+|    .|+++|+..++     .... ......- .+-+|.|++++|.--+
T Consensus       456 r~iAYafP~gy~tq~Iklydm~~~K-----iy~v-TT~ta~D-fsPaFD~d~ryLYfLs  507 (668)
T COG4946         456 RWIAYAFPEGYYTQSIKLYDMDGGK-----IYDV-TTPTAYD-FSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eeEEEecCcceeeeeEEEEecCCCe-----EEEe-cCCcccc-cCcccCCCCcEEEEEe
Confidence             666655544    68999999876     2222 2222222 5567888998776443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.4e-08  Score=82.95  Aligned_cols=246  Identities=12%  Similarity=0.138  Sum_probs=153.0

Q ss_pred             EEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-C---CEEE-----EecCCCcEEEEEcccCccc
Q 018591           20 SSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-G---NKVF-----TAHQDSRIRVWKVSRSSEN   89 (353)
Q Consensus        20 ~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~---~~l~-----s~~~dg~i~~w~~~~~~~~   89 (353)
                      ++..|+ .+.|+.=-..+.+.+|++.+.+.+. ..-|...|..+.++ +   ..++     ..+.-+.+++|........
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~  207 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH  207 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence            455665 3344443445789999987643332 22346677777777 2   2343     2456678999987633211


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEe--c---------CCCcEEEEEc
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSG--S---------WDKTLKVWRV  155 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~--~---------~dg~v~iwd~  155 (353)
                      ......++                             ....=..+.|++   .+|+.+  .         ...++++.++
T Consensus       208 ~~~a~ksF-----------------------------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t  258 (566)
T KOG2315|consen  208 QPVANKSF-----------------------------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT  258 (566)
T ss_pred             chhhhccc-----------------------------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence            11111110                             011112344544   222222  2         2347888888


Q ss_pred             CCceeeeeccccCcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591          156 ADLKCLESIKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  231 (353)
                      ....+.-.+. ..++|.++.|+++    -++.|-.-..+.+||++-.-        .+.-..+.. +++.|+|.|++++.
T Consensus       259 ~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------v~df~egpR-N~~~fnp~g~ii~l  328 (566)
T KOG2315|consen  259 QGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------VFDFPEGPR-NTAFFNPHGNIILL  328 (566)
T ss_pred             cCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------eEeCCCCCc-cceEECCCCCEEEE
Confidence            7555555554 3799999999443    34445556789999998553        334444444 89999999999988


Q ss_pred             ecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC------CCeEEEEecCCCcceEEeccccCC
Q 018591          232 GGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA------DKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       232 ~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                      ++-   -|.+.+||..+.    +.+..+......+..++|+|++++++..      |+.++||+... .   .+.... .
T Consensus       329 AGFGNL~G~mEvwDv~n~----K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~---~l~~~~-f  399 (566)
T KOG2315|consen  329 AGFGNLPGDMEVWDVPNR----KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-S---LLHEKM-F  399 (566)
T ss_pred             eecCCCCCceEEEeccch----hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-c---eeehhh-h
Confidence            765   479999999986    6777778888889999999999998875      67899999764 3   222111 1


Q ss_pred             CcCeEEEEeecC
Q 018591          303 EGPVKCLQASPN  314 (353)
Q Consensus       303 ~~~v~~~~~~~~  314 (353)
                      ......+.|-|-
T Consensus       400 ~sEL~qv~W~P~  411 (566)
T KOG2315|consen  400 KSELLQVEWRPF  411 (566)
T ss_pred             hHhHhheeeeec
Confidence            114667777764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.18  E-value=5.5e-07  Score=74.16  Aligned_cols=250  Identities=10%  Similarity=0.126  Sum_probs=139.6

Q ss_pred             eEEEEEC--CcEEEEEeC----CCcEEEEeCCCc--e--eeEEeccCceeeEEEEEe--CCEEEEec-CCCcEEEEEccc
Q 018591           19 VSSLALC--GEFILSASQ----GKDIIVWQQPDL--R--MFTKFGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWKVSR   85 (353)
Q Consensus        19 v~~~~~~--~~~l~s~~~----dg~v~vwd~~~~--~--~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~~~~   85 (353)
                      -..|+++  +++|.+...    +|.|..|++...  +  .+.........-..++++  +++|+++. .+|.+.+++++.
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            3455663  778887766    578999987653  3  333333222333456665  77777765 589999999987


Q ss_pred             Ccc-ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCce--
Q 018591           86 SSE-NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLK--  159 (353)
Q Consensus        86 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~--  159 (353)
                      ... .........+..                ....   -........++.++|  +++++. -....|.+|++....  
T Consensus       119 ~g~l~~~~~~~~~~g~----------------g~~~---~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~  179 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGS----------------GPNP---DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK  179 (345)
T ss_dssp             TSEEEEEEEEEESEEE----------------ESST---TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T
T ss_pred             CcccceeeeecccCCC----------------CCcc---cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce
Confidence            431 111000000000                0000   001234567889998  555554 334579999987644  


Q ss_pred             ee--eecc-ccCcceEEEEEeCC---eEEEEcCCCcEEEEeCC--CCCcccccceeeeec-cC--CceeeEEEEcCCCCe
Q 018591          160 CL--ESIK-AHDDAVNGLVASKG---IVYSASADGKIKAWGKE--LGKSHCHSLKGILEG-HK--DVSLNSVVVSDDGKW  228 (353)
Q Consensus       160 ~~--~~~~-~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~-~~--~~~v~~~~~~~~~~~  228 (353)
                      ..  ..+. ........+.|+++   .+++.-.+++|.++++.  ++..........+.. ..  ... ..++++|||++
T Consensus       180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~i~ispdg~~  258 (345)
T PF10282_consen  180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP-AEIAISPDGRF  258 (345)
T ss_dssp             EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE-EEEEE-TTSSE
T ss_pred             EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc-eeEEEecCCCE
Confidence            21  2221 23456788999444   44566678899999988  332111111111111 11  133 78999999999


Q ss_pred             EEeec-CCCcEEEeeccccccceeeeeecc--ccceeEEEEEEcCcEEEEec-CCCeEEEEecC
Q 018591          229 VYGGG-SDGFVMGWEGNVEIVRWKLACETK--AHEMAVLCVCLVGEFLCSGS-ADKSIGIWKRE  288 (353)
Q Consensus       229 l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~  288 (353)
                      |+++. ..+.|.+|++.......+......  +....-..++++|++|+++. .++.|.+|+++
T Consensus       259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            87765 466899999954322233333332  33334455566898888766 67899999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.17  E-value=6.8e-10  Score=81.81  Aligned_cols=128  Identities=15%  Similarity=0.315  Sum_probs=87.2

Q ss_pred             ceEEEEEeC---CeEEEecCCCcEEEEEcCCce-eeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCccc
Q 018591          130 SISCLTVYN---GLIYSGSWDKTLKVWRVADLK-CLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       130 ~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      .|.+++-+|   +.+++|+.||.+.+||.++.. +...+..|+.+++.+.|   ++..|++++.||.+..||..+.-   
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~---  257 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF---  257 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce---
Confidence            488888888   788999999999999998864 34556889999999999   34499999999999999977532   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc-cceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI-VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKS  281 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  281 (353)
                         +              ..+++.         ..+..|=-.... ...+....+......|.++...|..|++|+.-+.
T Consensus       258 ---l--------------~i~~~~---------s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~ea  311 (319)
T KOG4714|consen  258 ---L--------------SISNQA---------SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEA  311 (319)
T ss_pred             ---E--------------EecCcc---------ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccce
Confidence               1              122211         111222100000 0011222233344567777778999999999999


Q ss_pred             EEEEe
Q 018591          282 IGIWK  286 (353)
Q Consensus       282 i~iw~  286 (353)
                      |++++
T Consensus       312 Iyl~~  316 (319)
T KOG4714|consen  312 IYLTR  316 (319)
T ss_pred             EEEec
Confidence            99876

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=7.3e-08  Score=82.16  Aligned_cols=194  Identities=13%  Similarity=0.029  Sum_probs=115.3

Q ss_pred             ecCCceEEEEEeC--CeEEEecCC---CcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCC--cEEEEeC
Q 018591          126 EHADSISCLTVYN--GLIYSGSWD---KTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADG--KIKAWGK  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg--~i~iwd~  195 (353)
                      .+...+....|+|  +.|+..+.+   ..|.+||+.+++... +....+.+....|+++  .++ +...+|  .|.+||+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            4566788899998  566655433   369999998876543 2223344556788433  444 455555  5888899


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      .+++     . ..+..+... .....|+||++.++..+. +|  .|.++++.++...  .. ...+.......++++|+.
T Consensus       275 ~~~~-----~-~~lt~~~~~-~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~--~l-t~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        275 ASRQ-----L-SRVTNHPAI-DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE--RV-TFVGNYNARPRLSADGKT  344 (430)
T ss_pred             CCCC-----e-EEcccCCCC-cCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE--Ee-ecCCCCccceEECCCCCE
Confidence            8775     2 223333332 367889999987765543 33  5666777665321  11 122222334567788888


Q ss_pred             EEEecCC-C--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC---CeEEEEEcCCC
Q 018591          273 LCSGSAD-K--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD---KSLRVWWVSKQ  339 (353)
Q Consensus       273 l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~  339 (353)
                      |+....+ +  .|.+||+.+++. ..+..    ........|+|+    |+.++..+.+   ..|.++++...
T Consensus       345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spd----g~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        345 LVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPN----GTMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             EEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCC----CCEEEEEEecCCceEEEEEECCCC
Confidence            8766543 3  588899887652 22221    112234589999    8777766543   34666777543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.14  E-value=1.9e-09  Score=92.93  Aligned_cols=183  Identities=11%  Similarity=0.076  Sum_probs=135.3

Q ss_pred             eCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591          137 YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS  216 (353)
Q Consensus       137 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (353)
                      .+..++.|+....+..+|+++.+..+...-..+.|.-|..++..+.+|...|+|.+-|.++.+     ....+..|.+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-----~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-----TIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-----eeeeeeccccce
Confidence            447788888888899999998887776654455677777777899999999999999999988     889999999855


Q ss_pred             eeEEEEcCCCCeEEeecC---------CCcEEEeeccccccceeeeeeccccce-eEEEEEEc-CcEEEEecCCCeEEEE
Q 018591          217 LNSVVVSDDGKWVYGGGS---------DGFVMGWEGNVEIVRWKLACETKAHEM-AVLCVCLV-GEFLCSGSADKSIGIW  285 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~l~~~~~dg~i~iw  285 (353)
                         .+|+-.|+.|++++.         |..|++||++.-.    ......-+.+ ....+.|. ...+++.+..|...+-
T Consensus       221 ---SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr----al~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  221 ---SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR----ALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFV  293 (1118)
T ss_pred             ---eeeeccCCeEEEeecccccccccccchhhhhhhhhhh----ccCCcccccCchhhhhcccccceEEEEecccceeec
Confidence               556666888888874         5678999998863    2222221211 33445554 6678888999999999


Q ss_pred             ecCCCcce-EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          286 KREAFGKL-CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       286 ~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      |..+..++ ..+.....-...+.++.++++    ++.|+.|..+|.|.+|.
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn----~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSN----GDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCC----CceEEEecccCcEeeec
Confidence            94433322 122222333445999999999    99999999999999997

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=6.6e-08  Score=79.20  Aligned_cols=298  Identities=11%  Similarity=0.119  Sum_probs=172.7

Q ss_pred             EEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-----------CCcEEEEEcc
Q 018591           20 SSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-----------DSRIRVWKVS   84 (353)
Q Consensus        20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-----------dg~i~~w~~~   84 (353)
                      +-+.||  |.||+|--.-| |.+|--++...++.+.|.  .|.-+.|+  .++|++=+.           ...+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC--CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            345676  88999887765 899998888888888764  45556665  788887542           2579999999


Q ss_pred             cCccceeEEeeccccc-----cceeeeecccceeEeeccc-ceee--------eee---cCCceEEEEEeC--CeEEEec
Q 018591           85 RSSENVFRLVDTLPTT-----KDYLGKFMKQSNYVQTRRH-HKRL--------WIE---HADSISCLTVYN--GLIYSGS  145 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~--------~~~---~~~~i~~~~~~~--~~l~~~~  145 (353)
                      ++.     ....++..     .-.+.+.+....+...... ...+        +..   .-..|..+.|+|  +.||-=.
T Consensus       291 tG~-----lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt  365 (698)
T KOG2314|consen  291 TGL-----LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT  365 (698)
T ss_pred             ccc-----hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence            987     33333221     1112223333333322111 1111        111   224567778888  3333211


Q ss_pred             -----CCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEE----------EcCCCcEEEEeCCCCCcccccceee
Q 018591          146 -----WDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYS----------ASADGKIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       146 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~----------~~~dg~i~iwd~~~~~~~~~~~~~~  208 (353)
                           .-..+.+-.+.+++.+++-.-+.-.=..+.|  ++++|..          .+.-..+-|+.++...    .+...
T Consensus       366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd----Ipve~  441 (698)
T KOG2314|consen  366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD----IPVEV  441 (698)
T ss_pred             ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC----CCcee
Confidence                 1134555555555555554333322233445  2333332          1222245666666554    12222


Q ss_pred             eeccCCceeeEEEEcCCCCeEEeecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe---cCCCeE
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYGGGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG---SADKSI  282 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~dg~i  282 (353)
                      ...  ...|...+|-|.|+.+++-+.   ..++.+|.+++....+.++..+......-..++|.|++++++   |..|.+
T Consensus       442 vel--ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l  519 (698)
T KOG2314|consen  442 VEL--KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDL  519 (698)
T ss_pred             eec--chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccce
Confidence            222  223588999999988776543   357899998866555666666666555556677779988765   457899


Q ss_pred             EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC------CCeEEEEEcCC
Q 018591          283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL------DKSLRVWWVSK  338 (353)
Q Consensus       283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~------dg~i~iw~~~~  338 (353)
                      .++|..... ...+. ...|. ..+.+.|.|.    |+|+++++.      |.--++|+++.
T Consensus       520 ~F~D~~~a~-~k~~~-~~eh~-~at~veWDPt----GRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  520 EFYDTDYAD-LKDTA-SPEHF-AATEVEWDPT----GRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             EEEecchhh-hhhcc-Ccccc-ccccceECCC----CCEEEEeeehhhhccccceEEEEeec
Confidence            999987422 11121 12233 4688999999    999999986      44456777653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.11  E-value=5.1e-07  Score=82.74  Aligned_cols=310  Identities=11%  Similarity=0.022  Sum_probs=170.4

Q ss_pred             cCceEEEEE--CCcEEEEEeCCCcEEEE----eCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCc
Q 018591           16 VGSVSSLAL--CGEFILSASQGKDIIVW----QQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        16 ~~~v~~~~~--~~~~l~s~~~dg~v~vw----d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      .+.|.++.+  +...++.+..+|.|.+.    +..+.. +.....-...|.+++|+  +..|+.+..++++.+-+-+-..
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            467888888  36778888899999999    543322 22223335689999998  6788888888888776532111


Q ss_pred             cceeEEeeccccccceeeeecccce--------eEe-----ec---ccceeeeeecCCceEEEEEeC--CeEEEecC---
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSN--------YVQ-----TR---RHHKRLWIEHADSISCLTVYN--GLIYSGSW---  146 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~---~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~---  146 (353)
                      .....+.........++..-.+...        ...     ..   ......+. +...-..++|-+  .++++.+.   
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~  232 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE  232 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence            0000111111111111110000000        000     00   00011122 444556788887  67777654   


Q ss_pred             ---CCcEEEEEcCCceeeeeccccCcceEEEEE-eCC-eEEEEcC---CCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591          147 ---DKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG-IVYSASA---DGKIKAWGKELGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       147 ---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                         -..+++|+ ++|.....-+.-.+--.+++| +.+ ++++...   ...|.+|.-+..+...  ..-.+ .+....+.
T Consensus       233 ~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~-~~~~~~v~  308 (928)
T PF04762_consen  233 TGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRF-DPEEEKVI  308 (928)
T ss_pred             CCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCC-CCCCceee
Confidence               25799999 457665555544455567889 334 5555443   3457777654433110  11111 23344569


Q ss_pred             EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEEc---CcEEEEecCCCeEEEEec----CCC
Q 018591          219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCLV---GEFLCSGSADKSIGIWKR----EAF  290 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~---~~~l~~~~~dg~i~iw~~----~~~  290 (353)
                      .+.|++++..|+....|. |.+|-..+-  .|-+.+++.... ..+..+.|+   ...|.....+|.+..++.    ..+
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NY--HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s  385 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNY--HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS  385 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCC--EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence            999999999999987665 999987664  333333333221 122225554   445555555455544332    111


Q ss_pred             ---------------------------cceEEe--ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          291 ---------------------------GKLCRV--GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       291 ---------------------------~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                                                 ..+.++  ..+ ....+|.+++|+++    +..+++-..||.|.+|.....
T Consensus       386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~----~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPS----NSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCC----CCeEEEEECCCCEEEEEecCC
Confidence                                       000011  111 13568999999998    767999999999999986554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=4e-10  Score=86.34  Aligned_cols=157  Identities=13%  Similarity=0.102  Sum_probs=114.7

Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH  259 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  259 (353)
                      +-++.+.+..+-+-|+.++-      ...+..  ..-|.++.|...++++..|+.+|.|..+|++....-.......-.|
T Consensus       226 yhfs~G~sqqv~L~nvetg~------~qsf~s--ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh  297 (425)
T KOG2695|consen  226 YHFSVGLSQQVLLTNVETGH------QQSFQS--KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH  297 (425)
T ss_pred             eeecccccceeEEEEeeccc------cccccc--chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc
Confidence            44667778889999998884      334442  2225888898889999999999999999998763222222333456


Q ss_pred             ceeEEEEE---EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          260 EMAVLCVC---LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       260 ~~~v~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      ...++++.   +++++|.+.+.+|+|.+||.+.-+...-+..+.||...-.-+-+.-+.+  ...+++++.|...|||.+
T Consensus       298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~e--eg~I~s~GdDcytRiWsl  375 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEE--EGSIFSVGDDCYTRIWSL  375 (425)
T ss_pred             CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccc--cceEEEccCeeEEEEEec
Confidence            77777764   4689999999999999999987663334777888865444443333222  668888999999999999


Q ss_pred             CCCCCccccc
Q 018591          337 SKQSSTSDSE  346 (353)
Q Consensus       337 ~~~~~~~~~~  346 (353)
                      ..+..+.+..
T Consensus       376 ~~ghLl~tip  385 (425)
T KOG2695|consen  376 DSGHLLCTIP  385 (425)
T ss_pred             ccCceeeccC
Confidence            9998887665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=1.7e-08  Score=85.79  Aligned_cols=287  Identities=11%  Similarity=-0.004  Sum_probs=182.1

Q ss_pred             cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--------C------CEEEEecCCCcEEE
Q 018591           16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--------G------NKVFTAHQDSRIRV   80 (353)
Q Consensus        16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--------~------~~l~s~~~dg~i~~   80 (353)
                      ...-.++.|+ +.++|-|+. ..|.+-|..+.+.++.++.|...|+.+.|.        .      -.|+++...|.|.+
T Consensus        15 ~sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   15 RSNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             cccccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            3345566776 667777776 589999999999999999999999999995        1      15778888999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC------CeEEEecCCCcEEEEE
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~~dg~v~iwd  154 (353)
                      ||......     +..                           +..|..++..++|-+      +.|++-.....+.+|+
T Consensus        94 ~d~~~~s~-----~~~---------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwn  141 (1062)
T KOG1912|consen   94 VDFVLASV-----INW---------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWN  141 (1062)
T ss_pred             EEehhhhh-----hhh---------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEE
Confidence            99887651     111                           125777888888876      5677777788999999


Q ss_pred             cCCceeeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcc--cccceeeeeccCC---------------
Q 018591          155 VADLKCLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSH--CHSLKGILEGHKD---------------  214 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~---------------  214 (353)
                      ..+|+.............|+.+   +...+..-+..|.+.+-+.-...+.  .....+....|.+               
T Consensus       142 tdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~t  221 (1062)
T KOG1912|consen  142 TDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTT  221 (1062)
T ss_pred             ccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccccc
Confidence            9999999888766667777777   3335555556666666654322110  0001111111111               


Q ss_pred             -ce--------eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEE
Q 018591          215 -VS--------LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIG  283 (353)
Q Consensus       215 -~~--------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~  283 (353)
                       .+        ...++|+|.-+.++.......+.++|++-+......  .+.....+...+-|+  ...|++.-.||.+.
T Consensus       222 s~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv--pier~~akfv~vlP~~~rd~LfclH~nG~lt  299 (1062)
T KOG1912|consen  222 STPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV--PIERGGAKFVDVLPDPRRDALFCLHSNGRLT  299 (1062)
T ss_pred             CCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE--EeccCCcceeEeccCCCcceEEEEecCCeEE
Confidence             00        123567786555555556777999999877432222  222333456666666  45799999999999


Q ss_pred             EEecCCCc----------------ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          284 IWKREAFG----------------KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       284 iw~~~~~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      +|-.+...                +...+..++  +-.+......|..   ...++.--.+|.+.+|.+.+++..
T Consensus       300 irvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~---~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  300 IRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPST---PSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             EEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCC---hhhhhhhhhcchhHHHhhhcCCcC
Confidence            99866521                111111111  1123333444541   234555556888999999976543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.10  E-value=9e-10  Score=81.17  Aligned_cols=194  Identities=16%  Similarity=0.237  Sum_probs=117.9

Q ss_pred             eEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeec------------ccc--CcceEEEEEeCCeEEEEcCCCcEEEEeC
Q 018591          131 ISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESI------------KAH--DDAVNGLVASKGIVYSASADGKIKAWGK  195 (353)
Q Consensus       131 i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~------------~~~--~~~v~~i~~~~~~l~~~~~dg~i~iwd~  195 (353)
                      ++.+.+.. ..|+++..++.+......++.+....            ..|  .++...+...++.++++..||.+.+++.
T Consensus        39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            55555555 66777777777766655444333222            112  2233334445668999999999999998


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-----CCCcEEEeeccccccceeeeeeccccceeEEEEEEc-
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-----SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-  269 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-  269 (353)
                      +...    ............. .+.++...++.+.++.     .-+..+.|+++...........    ...+.+++.+ 
T Consensus       119 ~~~~----~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp  189 (319)
T KOG4714|consen  119 DKDL----ALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA----LDAVTALCSHP  189 (319)
T ss_pred             hHHH----hhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccc----cccchhhhCCc
Confidence            7632    1222222111111 2233333444444432     1234556665543211111111    1125444443 


Q ss_pred             --CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          270 --GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       270 --~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                        ...+++|+.||.+-+||.++...  +...++.|+.+|+.+-|+|..   +..|+++++||.+--||..+
T Consensus       190 ~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~l~ahk~~i~eV~FHpk~---p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  190 AQQHLVCCGTDDGIVGLWDARNVAM--PVSLLKAHKAEIWEVHFHPKN---PEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccEEEEecCCCeEEEEEcccccc--hHHHHHHhhhhhhheeccCCC---chheeEecCCCcEEEEcCCC
Confidence              56888999999999999998753  566688999999999999984   67899999999999999874

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=4.5e-07  Score=84.63  Aligned_cols=205  Identities=11%  Similarity=0.061  Sum_probs=124.2

Q ss_pred             eEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeecccc-----------------CcceEEEEEeC--C-eEEEEcCC
Q 018591          131 ISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKAH-----------------DDAVNGLVASK--G-IVYSASAD  187 (353)
Q Consensus       131 i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~--~-~l~~~~~d  187 (353)
                      -..+++++  +.|+++ ..++.|+.+|..++.. .++.+.                 -.....+++++  + .+++.+.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            45677776  545554 4457799999876543 222110                 11235678843  3 56666778


Q ss_pred             CcEEEEeCCCCCccccc---ceeeee------ccCCceeeEEEEcCCCCe-EEeecCCCcEEEeeccccccceee-----
Q 018591          188 GKIKAWGKELGKSHCHS---LKGILE------GHKDVSLNSVVVSDDGKW-VYGGGSDGFVMGWEGNVEIVRWKL-----  252 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~---~~~~~~------~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~-----  252 (353)
                      +.|++||..++......   ......      .....+ ..++++|+++. +++-..++.|++||+.++......     
T Consensus       705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P-~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQP-SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEEEEecCCccccCCCCccccccccCc-cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            99999998776411000   000000      011223 67999999884 455666789999998865321100     


Q ss_pred             ----eeeccc----------cceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecc----------ccCCCcCeEE
Q 018591          253 ----ACETKA----------HEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGA----------ITGHEGPVKC  308 (353)
Q Consensus       253 ----~~~~~~----------~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------~~~h~~~v~~  308 (353)
                          ...+..          ....-.++.++|+++++-..++.|++||..++........          ..+.-.....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                000000          0112234556688888889999999999987542211110          1112235788


Q ss_pred             EEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          309 LQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       309 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ++++++    |+++++-+.++.|++||+.+++.
T Consensus       864 Iavd~d----G~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        864 LALGEN----GRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEeCC----CCEEEEECCCCEEEEEECCCCcc
Confidence            999999    99999999999999999988764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.6e-07  Score=79.86  Aligned_cols=192  Identities=11%  Similarity=-0.007  Sum_probs=108.6

Q ss_pred             ecCCceEEEEEeC--CeEEEecC-CC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCCc--EEEEeC
Q 018591          126 EHADSISCLTVYN--GLIYSGSW-DK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADGK--IKAWGK  195 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg~--i~iwd~  195 (353)
                      .+...+.+..|+|  +.|+..+. ++  .|++||+.+++.... ....+......|+++  .++ +.+.+|.  |.++|+
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl  293 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI  293 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence            4566788889998  55655433 33  588999887764322 222233346778433  444 4566665  777788


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      .+++     . ..+..+... .....|+||++.++..+. ++  .|.++|+.++..  ... ...+......+++++|++
T Consensus       294 ~tg~-----~-~~lt~~~~~-~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~L-t~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        294 ATKA-----L-TRITRHRAI-DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRL-TFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             CCCC-----e-EECccCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEE-ecCCCCCcCeeECCCCCE
Confidence            7765     2 223333332 367899999998766543 44  455666665531  111 122222223467788888


Q ss_pred             EEEecC-CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC-CC--eEEEEEcC
Q 018591          273 LCSGSA-DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL-DK--SLRVWWVS  337 (353)
Q Consensus       273 l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~-dg--~i~iw~~~  337 (353)
                      |+..+. ++  .|.++|+.+++. ..+.   .. .......|+|+    |+.|+..+. +|  .+.+++..
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g~~-~~lt---~~-~~d~~ps~spd----G~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETGAM-QVLT---ST-RLDESPSVAPN----GTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             EEEEEecCCceEEEEEECCCCCe-EEcc---CC-CCCCCceECCC----CCEEEEEEecCCceEEEEEECC
Confidence            776554 34  456677776542 2221   11 11224579999    777665544 44  36667764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=2e-06  Score=67.09  Aligned_cols=270  Identities=13%  Similarity=0.183  Sum_probs=162.4

Q ss_pred             CCcEEEEeCCCc--eee-EEeccCceeeEEEEEe--CCEEEEecC---CCcEEEEEcccCccceeEEeeccccccceeee
Q 018591           35 GKDIIVWQQPDL--RMF-TKFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK  106 (353)
Q Consensus        35 dg~v~vwd~~~~--~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  106 (353)
                      +.-|++|++.+.  +.- ..+-.+.+..+-|+++  .+.|+++-.   +|.|..|.++.... ....+.....       
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G-~Lt~ln~~~~-------   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG-RLTFLNRQTL-------   86 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC-eEEEeecccc-------
Confidence            467999998732  211 1122345667778887  557887754   47788888875321 1111111110       


Q ss_pred             ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC-ceeee--eccccCcc----------
Q 018591          107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD-LKCLE--SIKAHDDA----------  170 (353)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~-~~~~~--~~~~~~~~----------  170 (353)
                                        .++  +-+-+++++  ++++++. ..|.|.++-++. |....  .+..|.+.          
T Consensus        87 ------------------~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h  146 (346)
T COG2706          87 ------------------PGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPH  146 (346)
T ss_pred             ------------------CCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCc
Confidence                              022  225677777  5666554 457899998865 33221  11223333          


Q ss_pred             eEEEEE-eCC-eEEEEcC-CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeecccc
Q 018591          171 VNGLVA-SKG-IVYSASA-DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVE  246 (353)
Q Consensus       171 v~~i~~-~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  246 (353)
                      +....+ +++ ++++... -..|.+|++..+..........  .....+ +-+.|+|++++..+.++ +++|.+|.....
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GP-RHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGP-RHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--CCCCCc-ceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            666666 334 5554433 3469999999776332222222  233344 89999999998876654 889999998874


Q ss_pred             ccceeeeeec-------cc-cceeEEEEEEcCcEEEEecC-CCeEEEEecCCCc-ceEEeccccCCCcCeEEEEeecCCC
Q 018591          247 IVRWKLACET-------KA-HEMAVLCVCLVGEFLCSGSA-DKSIGIWKREAFG-KLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       247 ~~~~~~~~~~-------~~-~~~~v~~~~~~~~~l~~~~~-dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      ....+..+..       .+ ....-..++++|++|.++.. ...|.+|.+.... .+..+.....+....+...++|.  
T Consensus       224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~--  301 (346)
T COG2706         224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS--  301 (346)
T ss_pred             CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC--
Confidence            3333322222       11 12344666778999988763 4478888887543 34344444445555889999999  


Q ss_pred             CCCeEEEEccCCC-eEEEEEcCCC
Q 018591          317 GGGFLLYSGSLDK-SLRVWWVSKQ  339 (353)
Q Consensus       317 ~~~~~l~s~~~dg-~i~iw~~~~~  339 (353)
                        +++|+.+..|+ .|.+|.+...
T Consensus       302 --g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         302 --GRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             --CCEEEEEccCCCcEEEEEEcCC
Confidence              99999888764 6999987653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=4e-10  Score=86.33  Aligned_cols=143  Identities=17%  Similarity=0.271  Sum_probs=108.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY  103 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  103 (353)
                      +-. ++.+.+-.|-+-|+++|... .|. ..+.|.++.|.  ++.++.|+.+|.|..+|++........+...       
T Consensus       225 gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-------  294 (425)
T KOG2695|consen  225 GYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-------  294 (425)
T ss_pred             eee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-------
Confidence            444 66666778889998876543 333 46778888887  7899999999999999998764222212111       


Q ss_pred             eeeecccceeEeecccceeeeeecCCceEEEEEe---CCeEEEecCCCcEEEEEcCCcee---eeeccccCcceEEEEE-
Q 018591          104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY---NGLIYSGSWDKTLKVWRVADLKC---LESIKAHDDAVNGLVA-  176 (353)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~i~~-  176 (353)
                                           .-|...|+++...   ...|++.+.+|.|++||++--++   +.++++|...-.-+-+ 
T Consensus       295 ---------------------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~  353 (425)
T KOG2695|consen  295 ---------------------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH  353 (425)
T ss_pred             ---------------------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence                                 1688899987754   48999999999999999987666   8888888654433333 


Q ss_pred             ---eCCeEEEEcCCCcEEEEeCCCCC
Q 018591          177 ---SKGIVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       177 ---~~~~l~~~~~dg~i~iwd~~~~~  199 (353)
                         .++.+++++.|-..|||.++.+.
T Consensus       354 v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  354 VKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             cccccceEEEccCeeEEEEEecccCc
Confidence               55689999999999999999887

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2.4e-09  Score=85.07  Aligned_cols=283  Identities=15%  Similarity=0.083  Sum_probs=171.8

Q ss_pred             ccCceEEEEEC-CcEEEEEeCCCcEEEEeCCC---ceeeEEeccCceeeEEEEEe--CCEEEEecC-CCcEEEEEcccCc
Q 018591           15 HVGSVSSLALC-GEFILSASQGKDIIVWQQPD---LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DSRIRVWKVSRSS   87 (353)
Q Consensus        15 h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~~w~~~~~~   87 (353)
                      |.+.|+.+... .+++.+++.||.++.|.-..   -+.+..+..|.+.|.+++.+  +-.+.+.+. |..++++|+++-.
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            88899998887 89999999999999998433   24555667788888888776  667778677 9999999998765


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEE-EecCCCcEEEEEcCCce--eeeec
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIY-SGSWDKTLKVWRVADLK--CLESI  164 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~-~~~~dg~v~iwd~~~~~--~~~~~  164 (353)
                      ......+..+|....                    ........+.       .++ +.-.++.+.++|-...-  ....-
T Consensus        88 minmiKL~~lPg~a~--------------------wv~skGd~~s-------~IAVs~~~sg~i~VvD~~~d~~q~~~fk  140 (558)
T KOG0882|consen   88 MINMIKLVDLPGFAE--------------------WVTSKGDKIS-------LIAVSLFKSGKIFVVDGFGDFCQDGYFK  140 (558)
T ss_pred             hhhhcccccCCCceE--------------------EecCCCCeee-------eEEeecccCCCcEEECCcCCcCccceec
Confidence            222222222221100                    0001111111       333 34567889999965433  23333


Q ss_pred             cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcc----------cccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591          165 KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSH----------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       165 ~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  232 (353)
                      ..|..+|..+.+  ..+.+++....|.|..|.....-+.          ...-+..+......+ .++.|+|++..+.+-
T Consensus       141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p-ts~Efsp~g~qistl  219 (558)
T KOG0882|consen  141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP-TSFEFSPDGAQISTL  219 (558)
T ss_pred             ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc-cceEEccccCccccc
Confidence            568999999999  4457888888999999988731100          000111122223334 899999999999999


Q ss_pred             cCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCc-CeEEEEe
Q 018591          233 GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG-PVKCLQA  311 (353)
Q Consensus       233 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~  311 (353)
                      +.|..|++++.++++.....-...........    +           .+.+-.+.-+.....-+.+..|.. .-+.+.|
T Consensus       220 ~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k----s-----------~y~l~~VelgRRmaverelek~~~~~~~~~~f  284 (558)
T KOG0882|consen  220 NPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK----S-----------PYGLMHVELGRRMAVERELEKHGSTVGTNAVF  284 (558)
T ss_pred             CcccEEEEEEeccchhhhhhhccchhhhhccc----c-----------ccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence            99999999999998433222111111000000    0           112222211111111122333433 3356678


Q ss_pred             ecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ...    +++|+-|+-=| |++.++.++.....+
T Consensus       285 des----~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  285 DES----GNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             cCC----CCEEEeeccee-EEEEEeecCeEEEEe
Confidence            877    88888887766 788888877665543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.08  E-value=1.7e-06  Score=69.90  Aligned_cols=249  Identities=14%  Similarity=0.142  Sum_probs=136.9

Q ss_pred             CCCceeeeeeCccCceEEEEECCcEEEEEeC----------CCcEEEEeCCCceeeEEeccCce---------eeEEEEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALCGEFILSASQ----------GKDIIVWQQPDLRMFTKFGHGDG---------SVKAVVT   64 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~----------dg~v~vwd~~~~~~~~~~~~~~~---------~v~~~~~   64 (353)
                      .+++.+.++..-..+---++-+++.|+.+..          +..|.+||..+++.+..+.....         ....+..
T Consensus        35 ~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~  114 (352)
T TIGR02658        35 EAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP  114 (352)
T ss_pred             CCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC
Confidence            4556666666433333223445666666554          78999999999999988864322         1334444


Q ss_pred             eCCEEEEec-C-CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEE
Q 018591           65 VGNKVFTAH-Q-DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIY  142 (353)
Q Consensus        65 ~~~~l~s~~-~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~  142 (353)
                      +|++|+... . +..|.+.|+.+++     .+..++...                            ...-+...+....
T Consensus       115 dgk~l~V~n~~p~~~V~VvD~~~~k-----vv~ei~vp~----------------------------~~~vy~t~e~~~~  161 (352)
T TIGR02658       115 DNKTLLFYQFSPSPAVGVVDLEGKA-----FVRMMDVPD----------------------------CYHIFPTANDTFF  161 (352)
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCc-----EEEEEeCCC----------------------------CcEEEEecCCccE
Confidence            588888665 3 6899999999887     444333211                            0111111111111


Q ss_pred             EecCCCcEEEEEcCC-cee-e---eeccc-----cCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeec
Q 018591          143 SGSWDKTLKVWRVAD-LKC-L---ESIKA-----HDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEG  211 (353)
Q Consensus       143 ~~~~dg~v~iwd~~~-~~~-~---~~~~~-----~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  211 (353)
                      +-+.||......+.+ ++. .   ..+..     ...+  .....++ .++.... |+|.+.|+.............+..
T Consensus       162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~  238 (352)
T TIGR02658       162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE  238 (352)
T ss_pred             EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc
Confidence            222333333322211 110 0   01111     0112  1111234 4444444 999999976544222122222211


Q ss_pred             -------cCCceeeEEEEcCCCCeEEeec----------CCCcEEEeeccccccceeeeeec-cccceeEEEEEEcCc-E
Q 018591          212 -------HKDVSLNSVVVSDDGKWVYGGG----------SDGFVMGWEGNVEIVRWKLACET-KAHEMAVLCVCLVGE-F  272 (353)
Q Consensus       212 -------~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~  272 (353)
                             .... +.-++++|+++.+++..          ..+.|.++|..+.+    ....+ .++...-..++++++ +
T Consensus       239 ~~~~~~wrP~g-~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~vG~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       239 AEKADGWRPGG-WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIELGHEIDSINVSQDAKPL  313 (352)
T ss_pred             cccccccCCCc-ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEeCCCceeeEEECCCCCeE
Confidence                   1122 24599999999888742          22579999998873    33332 345555677788888 7


Q ss_pred             EEEec-CCCeEEEEecCCCcce
Q 018591          273 LCSGS-ADKSIGIWKREAFGKL  293 (353)
Q Consensus       273 l~~~~-~dg~i~iw~~~~~~~~  293 (353)
                      |++.. .++.|.++|..+++..
T Consensus       314 lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             EEEeCCCCCcEEEEECcCCeEE
Confidence            77655 6888999999998743

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.07  E-value=4.7e-10  Score=59.73  Aligned_cols=37  Identities=32%  Similarity=0.628  Sum_probs=34.3

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ   42 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd   42 (353)
                      |++++++++|.++|++|+|+  +++|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999996  78999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=1.2e-09  Score=92.08  Aligned_cols=236  Identities=13%  Similarity=0.153  Sum_probs=155.5

Q ss_pred             ceEEEEEC----CcEEEEEeCCCcEEEEeCC---CceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCc
Q 018591           18 SVSSLALC----GEFILSASQGKDIIVWQQP---DLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        18 ~v~~~~~~----~~~l~s~~~dg~v~vwd~~---~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      .|-.+.|+    ..+-+.......-.+|++.   +......+.+|...|+.+.|.   ...+++++.|-.+..||++...
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~  148 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH  148 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence            34555664    2344444445677889864   234445567899999999998   6789999999999999998765


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-eeeeec
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL-KCLESI  164 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~-~~~~~~  164 (353)
                      ...+..                               ..-...-..+.|+-  ..+++.+..+.|.+||++.+ .++..+
T Consensus       149 ~p~ys~-------------------------------~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~  197 (1081)
T KOG0309|consen  149 RPFYST-------------------------------SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL  197 (1081)
T ss_pred             cceeee-------------------------------ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEe
Confidence            221111                               12223345567765  55666667788999999875 567788


Q ss_pred             cccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC--eEEeecCCCcEE
Q 018591          165 KAHDDAVNGLVA---SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK--WVYGGGSDGFVM  239 (353)
Q Consensus       165 ~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~  239 (353)
                      ++|...|+.+.|   ....+.+.+.||+|+.||.......     .........++..-.+.|-|.  .+.-.-.+..+.
T Consensus       198 K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e-----~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~  272 (1081)
T KOG0309|consen  198 KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE-----SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP  272 (1081)
T ss_pred             cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-----cceeccccCcceeccccccCceeEeccccCCeeee
Confidence            889999999998   3458999999999999998765421     111122233345555556433  222222222444


Q ss_pred             Eeecccccc------ceeeeeeccccceeEEEEEEc------------CcEEEEecCCCeEEEEecCC
Q 018591          240 GWEGNVEIV------RWKLACETKAHEMAVLCVCLV------------GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       240 i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~~------------~~~l~~~~~dg~i~iw~~~~  289 (353)
                      +++.+....      ....+..+.+|...|..+.|-            .-.|++-+.|..+++|-+.+
T Consensus       273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  273 QLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            444433221      125677888999888777662            23799999999999998865

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.04  E-value=1.4e-06  Score=75.16  Aligned_cols=282  Identities=13%  Similarity=0.125  Sum_probs=160.3

Q ss_pred             ECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce------ee--EEEEEeC-CEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           24 LCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG------SV--KAVVTVG-NKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        24 ~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~------~v--~~~~~~~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      +.+..++.++.++.|.-.|..+|+.+..+.....      .+  ..+...+ +.++.++.+|.|.-+|.++++..-....
T Consensus        59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            3466777888899999999999998877654322      11  1123334 8889999999999999988873211110


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCce-EEEEEeCCeEEEec---------CCCcEEEEEcCCceeeeec
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI-SCLTVYNGLIYSGS---------WDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~  164 (353)
                      ..     ..                      .....+ .+..+..+.++.++         .+|.+..+|..+++.+..+
T Consensus       139 ~~-----~~----------------------~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         139 ND-----QV----------------------PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             CC-----Cc----------------------CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence            00     00                      000000 01112224455543         4688999999999888776


Q ss_pred             cccCc--------------------ceE-EEEE--eCCeEEEEcCCC------------------cEEEEeCCCCCcccc
Q 018591          165 KAHDD--------------------AVN-GLVA--SKGIVYSASADG------------------KIKAWGKELGKSHCH  203 (353)
Q Consensus       165 ~~~~~--------------------~v~-~i~~--~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~  203 (353)
                      +....                    .+. ..++  ..+.++.++.++                  .|.-+|..+++....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~  271 (488)
T cd00216         192 YTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF  271 (488)
T ss_pred             eccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence            43211                    011 1233  345777777665                  688999999883221


Q ss_pred             cceee-----eeccCCceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEE
Q 018591          204 SLKGI-----LEGHKDVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCS  275 (353)
Q Consensus       204 ~~~~~-----~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  275 (353)
                      .....     +.......+..+. .-++.   .++.++.+|.+..+|.++++..++......       .+..+...++.
T Consensus       272 ~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-------~~~~~~~~vyv  343 (488)
T cd00216         272 YQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-------PMAYDPGLVYL  343 (488)
T ss_pred             eeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-------ccccCCceEEE
Confidence            10000     0011111111111 01232   678889999999999999977665432200       01111232332


Q ss_pred             e------------------cCCCeEEEEecCCCcceEEeccccCCC------cCe--EEEEeecCCCCCCeEEEEccCCC
Q 018591          276 G------------------SADKSIGIWKREAFGKLCRVGAITGHE------GPV--KCLQASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       276 ~------------------~~dg~i~iw~~~~~~~~~~~~~~~~h~------~~v--~~~~~~~~~~~~~~~l~s~~~dg  329 (353)
                      +                  ..+|.+.-.|..+++........ .+.      .+.  ..+..  .    +..|+.++.||
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~-~~~~~~~~g~~~~~~~~~~--~----g~~v~~g~~dG  416 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG-TIRDSWNIGFPHWGGSLAT--A----GNLVFAGAADG  416 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC-ccccccccCCcccCcceEe--c----CCeEEEECCCC
Confidence            2                  24678888898888754433221 111      111  11222  2    56889999999


Q ss_pred             eEEEEEcCCCCCcccccC
Q 018591          330 SLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       330 ~i~iw~~~~~~~~~~~~~  347 (353)
                      .|+.+|.++++.+.+.+.
T Consensus       417 ~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         417 YFRAFDATTGKELWKFRT  434 (488)
T ss_pred             eEEEEECCCCceeeEEEC
Confidence            999999999998876653

The alignment model contains an 8-bladed beta-propeller.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.04  E-value=1.1e-08  Score=88.39  Aligned_cols=181  Identities=13%  Similarity=0.147  Sum_probs=138.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      +..++-|+....+...|+.+.+..+......+.|.-+..+++.+.+|...|+|.+-|.++-+     .            
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-----~------------  209 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-----T------------  209 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-----e------------
Confidence            55677777777888999998888887776666788888899999999999999999988765     3            


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecC---------CCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSW---------DKTLKVWRVADLKCLESIKAHDDAVNGLVA  176 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~  176 (353)
                                     ...+..|++.|..+....+.|++++.         |.-|++||++..+.+..+.-+.++ .-+.|
T Consensus       210 ---------------iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf  273 (1118)
T KOG1275|consen  210 ---------------IHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRF  273 (1118)
T ss_pred             ---------------eeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhh
Confidence                           33344799999999999988888875         556899999988877776655544 33445


Q ss_pred             eCC---eEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          177 SKG---IVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       177 ~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      .|.   .+++++..|...+-|..+...   +....+. ...+.-+..+.++++++.++.|..+|.|.+|.
T Consensus       274 ~Psl~t~~~V~S~sGq~q~vd~~~lsN---P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  274 HPSLTTRLAVTSQSGQFQFVDTATLSN---PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccccceEEEEecccceeeccccccCC---CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            443   788889999999998433221   0122222 22223258999999999999999999999997

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=1.7e-06  Score=80.89  Aligned_cols=251  Identities=14%  Similarity=0.105  Sum_probs=142.2

Q ss_pred             EEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEecc-Cc-------------eeeEEEEEe--CCEEEEec-CCCcEEE
Q 018591           21 SLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGH-GD-------------GSVKAVVTV--GNKVFTAH-QDSRIRV   80 (353)
Q Consensus        21 ~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~-------------~~v~~~~~~--~~~l~s~~-~dg~i~~   80 (353)
                      .++++   ++++++-+.++.|++||.. +..+..+.. ..             ..-..++++  ++.|+.+. .++.|++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            56664   5677777888999999975 444444432 11             123567776  55555544 4567888


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCC
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~  157 (353)
                      +|..++.      +.++............ ..     ....    ..-..-..+++++   ..+++.+.++.|++||..+
T Consensus       651 id~~~~~------V~tlag~G~~g~~~~g-g~-----~~~~----~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~  714 (1057)
T PLN02919        651 IDFVNET------VRTLAGNGTKGSDYQG-GK-----KGTS----QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD  714 (1057)
T ss_pred             EecCCCE------EEEEeccCcccCCCCC-Ch-----hhhH----hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence            8886653      1111110000000000 00     0000    0011224678876   4556667788999999877


Q ss_pred             ceeeeeccc---------c------CcceEEEEEeC--C-eEEEEcCCCcEEEEeCCCCCccccc--------ceeeee-
Q 018591          158 LKCLESIKA---------H------DDAVNGLVASK--G-IVYSASADGKIKAWGKELGKSHCHS--------LKGILE-  210 (353)
Q Consensus       158 ~~~~~~~~~---------~------~~~v~~i~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~-  210 (353)
                      +.... +.+         +      -.....+++++  + .+++-+.++.|++||+.++......        ....+. 
T Consensus       715 g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~  793 (1057)
T PLN02919        715 GVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD  793 (1057)
T ss_pred             CeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence            64421 111         0      12345678833  3 5566677899999999876411000        000000 


Q ss_pred             -------ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec----------cc--cceeEEEEEEcCc
Q 018591          211 -------GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET----------KA--HEMAVLCVCLVGE  271 (353)
Q Consensus       211 -------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~--~~~~v~~~~~~~~  271 (353)
                             .....+ ..++++++|+.+++-..++.|++||..++.... ....-          ..  ....-.++.++|+
T Consensus       794 ~dG~g~~~~l~~P-~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        794 HDGVGSEVLLQHP-LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             CCCchhhhhccCC-ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence                   011234 689999999998999999999999998763211 11000          00  1122345566788


Q ss_pred             EEEEecCCCeEEEEecCCCc
Q 018591          272 FLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~  291 (353)
                      ++++-+.++.|++||+++++
T Consensus       872 lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        872 LFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EEEEECCCCEEEEEECCCCc
Confidence            88998999999999998865

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.00  E-value=1.5e-09  Score=57.81  Aligned_cols=37  Identities=38%  Similarity=0.644  Sum_probs=35.1

Q ss_pred             EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      ++..+.+|.++|++++|+|+    +.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~----~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPD----GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETT----SSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecc----cccceeeCCCCEEEEEC
Confidence            67788999999999999999    99999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=3.5e-08  Score=84.27  Aligned_cols=179  Identities=11%  Similarity=0.071  Sum_probs=125.4

Q ss_pred             cCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591           16 VGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVD   95 (353)
Q Consensus        16 ~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~   95 (353)
                      .+.++|+++++++|+-|+.+|.|++.+.+.. . .+...|+..    ...|.++++|+.||+|.+-.+-+..+...    
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~----  108 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQ----  108 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcccee----
Confidence            4678899999999999999999999997543 3 333333333    33499999999999999998877652111    


Q ss_pred             ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-------CeEEEecCCCcEEEEEcCC---ceeeeecc
Q 018591           96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-------GLIYSGSWDKTLKVWRVAD---LKCLESIK  165 (353)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~~~dg~v~iwd~~~---~~~~~~~~  165 (353)
                                                   .....++.+++++|       +.+++|+.-| +.++.-+=   ...+ .+.
T Consensus       109 -----------------------------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~  157 (846)
T KOG2066|consen  109 -----------------------------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS  157 (846)
T ss_pred             -----------------------------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence                                         03556888999988       5899999988 77775321   1122 344


Q ss_pred             ccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec------cCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          166 AHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG------HKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       166 ~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      .-.++|.++.|.+++++=++.+| +++||+...+.     ...++.      ....+ ..+.|.++. .|+.|-.| +|+
T Consensus       158 ~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~-----l~~i~~p~~~~R~e~fp-phl~W~~~~-~LVIGW~d-~v~  228 (846)
T KOG2066|consen  158 EGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQR-----LTNIPPPSQSVRPELFP-PHLHWQDED-RLVIGWGD-SVK  228 (846)
T ss_pred             cCccceEEEEecCcEEEEecCCC-cEEEeccccce-----eeccCCCCCCCCcccCC-CceEecCCC-eEEEecCC-eEE
Confidence            55789999999999999888776 89999988762     222211      11222 456777664 45556544 588


Q ss_pred             Eeecc
Q 018591          240 GWEGN  244 (353)
Q Consensus       240 i~d~~  244 (353)
                      +..++
T Consensus       229 i~~I~  233 (846)
T KOG2066|consen  229 ICSIK  233 (846)
T ss_pred             EEEEe
Confidence            88887

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.3e-07  Score=74.41  Aligned_cols=256  Identities=13%  Similarity=0.100  Sum_probs=143.2

Q ss_pred             EEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeE
Q 018591           38 IIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYV  114 (353)
Q Consensus        38 v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (353)
                      |++.+..+.+....+..|...|..++|+   ...+..++.+..|++.|+++..     .+...                 
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-----~vssy-----------------  232 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-----VVSSY-----------------  232 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-----eeehe-----------------
Confidence            5555555555566667788899999998   4478899999999999998875     22211                 


Q ss_pred             eecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCce-eeeeccc--cCcceEEEEE-eCC-------e
Q 018591          115 QTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLK-CLESIKA--HDDAVNGLVA-SKG-------I  180 (353)
Q Consensus       115 ~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~-~~~~~~~--~~~~v~~i~~-~~~-------~  180 (353)
                                ..+ ..+.+++|.-   +++.+|-.+|.|.+||++..+ ++..+.+  ...+|..++. +++       .
T Consensus       233 ----------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl  301 (463)
T KOG1645|consen  233 ----------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL  301 (463)
T ss_pred             ----------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence                      134 6788889876   899999999999999998644 2233322  2456666655 332       3


Q ss_pred             EEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-C------cEEE-eeccccccceee
Q 018591          181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-G------FVMG-WEGNVEIVRWKL  252 (353)
Q Consensus       181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g------~i~i-~d~~~~~~~~~~  252 (353)
                      ++..+.  .+..|++..... .  ....++-....+..++.+.+..+.++..... .      .+-. -|...+.+.+..
T Consensus       302 Lv~~lt--~l~f~ei~~s~~-~--~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~  376 (463)
T KOG1645|consen  302 LVFALT--VLQFYEIVFSAE-C--LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGK  376 (463)
T ss_pred             EEeeeh--hhhhhhhhcccc-C--CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeee
Confidence            433333  256676654331 1  1222222222333555555544443333221 0      0000 011111111111


Q ss_pred             eeec------cccc-eeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          253 ACET------KAHE-MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       253 ~~~~------~~~~-~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      ....      +.+. ..+...--+.-.+..|...+.+.+||..+.+   .+..+. -..+|.+++.....  ++.+|+.-
T Consensus       377 r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e---vvQ~l~-~~epv~Dicp~~~n--~~syLa~L  450 (463)
T KOG1645|consen  377 RRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE---VVQTLA-LSEPVLDICPNDTN--GSSYLALL  450 (463)
T ss_pred             cccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh---eeeecc-cCcceeecceeecC--Ccchhhhe
Confidence            1111      0111 1111111123344566678899999999987   444443 24678877665442  26688877


Q ss_pred             cCCCeEEEEEcCC
Q 018591          326 SLDKSLRVWWVSK  338 (353)
Q Consensus       326 ~~dg~i~iw~~~~  338 (353)
                      .+| .++||..+.
T Consensus       451 Td~-~v~Iyk~es  462 (463)
T KOG1645|consen  451 TDD-RVHIYKNES  462 (463)
T ss_pred             ecc-eEEEEecCC
Confidence            655 788887654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=2.1e-08  Score=78.59  Aligned_cols=155  Identities=18%  Similarity=0.184  Sum_probs=101.8

Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH  259 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  259 (353)
                      +++.+..+....+++.+.... ...+......... . +++.|..+......+..-|.++-+|+-....  ......-+|
T Consensus        76 llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~-~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~~lGh  150 (390)
T KOG3914|consen   76 LVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKR-P-TAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEPILGH  150 (390)
T ss_pred             EEEEEeCCCceEEEEEecCCC-cceeeeEeecccC-c-ceeeeeeccceEEEEeecCCceeeeeecccc--cCcchhhhh
Confidence            666666666666777665542 1122222222222 2 5566666666666655555555555443211  122334567


Q ss_pred             ceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEecc-ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          260 EMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       260 ~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      -..++.+++  |+++|+++..|..|++-......   .+.. ..||+..|..++.-++     +.|+++|.|++|++||+
T Consensus       151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             hhhhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEec
Confidence            776666554  68999999999999998776543   2332 3589999999999985     67999999999999999


Q ss_pred             CCCCCcccccC
Q 018591          337 SKQSSTSDSEE  347 (353)
Q Consensus       337 ~~~~~~~~~~~  347 (353)
                      .+++++.+...
T Consensus       223 ~sgk~L~t~dl  233 (390)
T KOG3914|consen  223 TSGKLLDTCDL  233 (390)
T ss_pred             ccCCcccccch
Confidence            99999876553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=1e-06  Score=74.54  Aligned_cols=202  Identities=12%  Similarity=-0.025  Sum_probs=108.8

Q ss_pred             CCceEEEEEeC--Ce---EEEecCCC--cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEc-CCC----cEEEE
Q 018591          128 ADSISCLTVYN--GL---IYSGSWDK--TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSAS-ADG----KIKAW  193 (353)
Q Consensus       128 ~~~i~~~~~~~--~~---l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~-~dg----~i~iw  193 (353)
                      ......-.|+|  +.   +++...+|  .|.+.++..++.... ....+......|+++  .|+..+ .+|    .+..|
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            33455668888  22   23444443  577888877654332 223344456778433  554433 223    34446


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEee--ccccccceeeeeeccccceeEEEEEEcC
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWE--GNVEIVRWKLACETKAHEMAVLCVCLVG  270 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (353)
                      ++..+..  ............. ....+|+|||+.|+..+ .+|...+|.  +........... ..........++++|
T Consensus       263 ~~~~g~~--g~~~~lt~~~~~~-~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG  338 (428)
T PRK01029        263 SLETGAI--GKPRRLLNEAFGT-QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDG  338 (428)
T ss_pred             ecccCCC--CcceEeecCCCCC-cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCC
Confidence            7664310  0122222222222 26789999999777654 466555554  332111111111 111122345677788


Q ss_pred             cEEEEecCC---CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc-cC--CCeEEEEEcCCCCCc
Q 018591          271 EFLCSGSAD---KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG-SL--DKSLRVWWVSKQSST  342 (353)
Q Consensus       271 ~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~-~~--dg~i~iw~~~~~~~~  342 (353)
                      +.|+..+.+   ..|.+||+.+++.. .   +......+....|+||    |+.|+.. ..  ...|.+|++..++..
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~-~---Lt~~~~~~~~p~wSpD----G~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDY-Q---LTTSPENKESPSWAID----SLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeE-E---ccCCCCCccceEECCC----CCEEEEEECCCCCceEEEEECCCCCEE
Confidence            888765432   47999999887632 2   2222345678999999    8777643 32  356888898876543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.2e-06  Score=75.80  Aligned_cols=198  Identities=14%  Similarity=0.218  Sum_probs=127.9

Q ss_pred             ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-eEEEEEe--CCEEEEecCCCc-----EEEEEcccCccc
Q 018591           18 SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-VKAVVTV--GNKVFTAHQDSR-----IRVWKVSRSSEN   89 (353)
Q Consensus        18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~--~~~l~s~~~dg~-----i~~w~~~~~~~~   89 (353)
                      .|+|+.-++..++.|+.||.|.+.+ ...+.++.+..+... |..+...  .++|++.+.|+.     +++|+++.....
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            7788777899999999999999988 455666777777666 5555444  358888877754     899999865322


Q ss_pred             e-eEEe---eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC----Cce
Q 018591           90 V-FRLV---DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA----DLK  159 (353)
Q Consensus        90 ~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~----~~~  159 (353)
                      . ..++   ...+..                       ......++.+++.+.  ..+++|-.+|.|..+.-+    .+.
T Consensus       106 ~sP~c~~~~ri~~~~-----------------------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs  162 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIK-----------------------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS  162 (933)
T ss_pred             CCcceeeeeeeeccC-----------------------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence            2 2222   111100                       002456788888888  899999999999998532    122


Q ss_pred             eeeeccccCcceEEEEE-eCC-e-EEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          160 CLESIKAHDDAVNGLVA-SKG-I-VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~-~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      ...-......+|+.+++ .++ . ++++. -..|.+|.+....     +......+.+....|..+++....+++++.. 
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-  235 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-  235 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecCc-
Confidence            12222233689999999 333 3 33333 3578999988432     3333233444444888888876656666544 


Q ss_pred             cEEEeecccc
Q 018591          237 FVMGWEGNVE  246 (353)
Q Consensus       237 ~i~i~d~~~~  246 (353)
                      .+.+|+....
T Consensus       236 ~l~fY~sd~~  245 (933)
T KOG2114|consen  236 FLYFYDSDGR  245 (933)
T ss_pred             eEEEEcCCCc
Confidence            4999998865

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.4e-08  Score=79.57  Aligned_cols=212  Identities=16%  Similarity=0.163  Sum_probs=144.4

Q ss_pred             ecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC---ceeeeeccccCcceEEEEE-eCC-eEEEEcC-CCcEEEEeCCCC
Q 018591          126 EHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD---LKCLESIKAHDDAVNGLVA-SKG-IVYSASA-DGKIKAWGKELG  198 (353)
Q Consensus       126 ~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~-dg~i~iwd~~~~  198 (353)
                      -|...|+.+.... +++++++.||.++.|--..   -+.+..+..|-..|.+++. .++ .+.+.+. |..++++|+.+-
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            4788888888777 9999999999999997533   2345566778888888887 333 6666666 999999999876


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCC---CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEE
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFL  273 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l  273 (353)
                      .     ....+....-+-......+|..   ..-++.-.+|.+.++|-.....+  ......-|..+|.++..+  +..+
T Consensus        87 D-----minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q--~~~fkklH~sPV~~i~y~qa~Ds~  159 (558)
T KOG0882|consen   87 D-----MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ--DGYFKKLHFSPVKKIRYNQAGDSA  159 (558)
T ss_pred             c-----hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc--cceecccccCceEEEEeeccccce
Confidence            5     2222221111110122222221   22334456789999998765322  222334567777777665  7888


Q ss_pred             EEecCCCeEEEEecCC-Ccce-----------EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          274 CSGSADKSIGIWKREA-FGKL-----------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~-~~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ++....|.|.-|.... .+.+           ..+..+........++.|+|+    +..+.+-+.|..|+++.+.+++.
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~----g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD----GAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc----cCcccccCcccEEEEEEeccchh
Confidence            8998999999999873 1111           011112233456899999999    99999999999999999999998


Q ss_pred             cccccCC
Q 018591          342 TSDSEEK  348 (353)
Q Consensus       342 ~~~~~~~  348 (353)
                      ++.+++.
T Consensus       236 vqeiDE~  242 (558)
T KOG0882|consen  236 VQEIDEV  242 (558)
T ss_pred             hhhhhcc
Confidence            8877654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=3.6e-08  Score=77.37  Aligned_cols=74  Identities=22%  Similarity=0.337  Sum_probs=65.2

Q ss_pred             ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeec-cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCC
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESI-KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~  199 (353)
                      ||-..++.++++|  ..++++..|..|++-....--.+..+ -+|..-|..++. .+..|++++.|++|++||+++++
T Consensus       149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence            8999999999999  89999999999999888765555554 579999999999 55578999999999999999998

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.91  E-value=1.3e-06  Score=70.61  Aligned_cols=166  Identities=17%  Similarity=0.051  Sum_probs=116.2

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCC-cEEEEeCCCCCcccccceeeeeccCCc
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADG-KIKAWGKELGKSHCHSLKGILEGHKDV  215 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~  215 (353)
                      ++++..+. |...+.+...+-.++.  ++.+.|.-..+  .+.-++.|..|| .+-++|.++++      ...+...-+.
T Consensus       333 d~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~  403 (668)
T COG4946         333 DYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGN  403 (668)
T ss_pred             cEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce------EEEeeCCccc
Confidence            66666665 6777777655544443  45666776666  455888899998 89999999886      4455555555


Q ss_pred             eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCC----eEEEEecCC
Q 018591          216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADK----SIGIWKREA  289 (353)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg----~i~iw~~~~  289 (353)
                      + .++..+|+|++++++.....+.+.|+.++    ......+....-++.+.++  ++++|-+--+|    .|+++|+.+
T Consensus       404 I-~av~vs~dGK~~vvaNdr~el~vididng----nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         404 I-EAVKVSPDGKKVVVANDRFELWVIDIDNG----NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             e-EEEEEcCCCcEEEEEcCceEEEEEEecCC----CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            4 99999999999999999999999999998    3333344455667777664  78888776655    689999998


Q ss_pred             CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591          290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS  326 (353)
Q Consensus       290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~  326 (353)
                      ++.. .+.+..+|.   .+-+|.|+    +++|.--+
T Consensus       479 ~Kiy-~vTT~ta~D---fsPaFD~d----~ryLYfLs  507 (668)
T COG4946         479 GKIY-DVTTPTAYD---FSPAFDPD----GRYLYFLS  507 (668)
T ss_pred             CeEE-EecCCcccc---cCcccCCC----CcEEEEEe
Confidence            7632 233333332   34567777    77776544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.2e-07  Score=81.14  Aligned_cols=190  Identities=17%  Similarity=0.138  Sum_probs=131.4

Q ss_pred             cCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccce
Q 018591          127 HADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       127 ~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  206 (353)
                      ....++|++++...++.|+.+|.|++.+.. +.+ .+...|...    ...+.++++|+.||++.|-.+-+.+     ..
T Consensus        38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~-----~~  106 (846)
T KOG2066|consen   38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD-----EI  106 (846)
T ss_pred             hhhHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCc-----cc
Confidence            345678888888999999999999999974 444 333344433    3356699999999999999888776     33


Q ss_pred             eeeeccCCceeeEEEEcCC-----CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591          207 GILEGHKDVSLNSVVVSDD-----GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKS  281 (353)
Q Consensus       207 ~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  281 (353)
                      ..+.-+.  ++.+++++|+     .+.+++|+.-| +.++.-+--..  +....+....++|.++.|.|+++|=++.+| 
T Consensus       107 ~~~df~r--piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v~l~~~eG~I~~i~W~g~lIAWand~G-  180 (846)
T KOG2066|consen  107 TQYDFKR--PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-  180 (846)
T ss_pred             eeEecCC--cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--ccceeeecCccceEEEEecCcEEEEecCCC-
Confidence            3333332  3589999997     56899999998 77776443211  111245566889999999999999998888 


Q ss_pred             EEEEecCCCcceEEeccccC---CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          282 IGIWKREAFGKLCRVGAITG---HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      |++||..+.+.+..+.....   ....-..+.|.++     ..|+.|=.| +|+|..++++
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-----~~LVIGW~d-~v~i~~I~~~  235 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-----DRLVIGWGD-SVKICSIKKR  235 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-----CeEEEecCC-eEEEEEEecc
Confidence            99999998774322221110   1112356788875     455555334 7999988844

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.84  E-value=8.8e-06  Score=67.40  Aligned_cols=202  Identities=14%  Similarity=0.094  Sum_probs=105.5

Q ss_pred             ceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeee--ccc------cCcceEEEEE-----eC-C----e
Q 018591          120 HKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLES--IKA------HDDAVNGLVA-----SK-G----I  180 (353)
Q Consensus       120 ~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~--~~~------~~~~v~~i~~-----~~-~----~  180 (353)
                      +..++....++|++++.+. ..++.|+.+|.+.+.|++....+..  +..      ....++++.|     .+ +    .
T Consensus        78 P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             chhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            4455556789999999999 9999999999999999987766544  222      2346778877     22 2    7


Q ss_pred             EEEEcCCCcEEEEeCCC-CCc-ccccceeeeeccCCceeeEEEEcCC-C-------------------CeEEeecCCCcE
Q 018591          181 VYSASADGKIKAWGKEL-GKS-HCHSLKGILEGHKDVSLNSVVVSDD-G-------------------KWVYGGGSDGFV  238 (353)
Q Consensus       181 l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~-------------------~~l~~~~~dg~i  238 (353)
                      +++|...|.+.+|.+.- ... ...........+.+.++.-..++.+ |                   ..++....+..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            88999999999998752 111 1111111222233333222223221 0                   123334446679


Q ss_pred             EEeeccccccceeeeeeccc-cceeEEEEE-----EcCcEEEEecCCCeEEEEecCCCcceEEecccc-CCCcCeEEEEe
Q 018591          239 MGWEGNVEIVRWKLACETKA-HEMAVLCVC-----LVGEFLCSGSADKSIGIWKREAFGKLCRVGAIT-GHEGPVKCLQA  311 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~  311 (353)
                      +++...+.+...+..   .. ......++.     ..+..|++-..+|.+++|.+...+....+.... .+...+....+
T Consensus       238 rv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi  314 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI  314 (395)
T ss_dssp             EEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred             EEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence            999888764322222   11 111122221     246678888899999999999877443333211 12234556677


Q ss_pred             ecCCCCCCeEEEEccCC
Q 018591          312 SPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~d  328 (353)
                      +++    |+.++-.+..
T Consensus       315 s~~----Gdi~~~~gps  327 (395)
T PF08596_consen  315 SRN----GDIFYWTGPS  327 (395)
T ss_dssp             -TT----S-EEEE-SSS
T ss_pred             CCC----CCEEEEeCcc
Confidence            888    8888777654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=7.1e-06  Score=69.48  Aligned_cols=233  Identities=8%  Similarity=-0.047  Sum_probs=121.1

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCE---EEEecCCC--cEEEEEcccCccceeEEeeccccccceeeeec
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNK---VFTAHQDS--RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM  108 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~---l~s~~~dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (353)
                      ..|.+.|...+... .+......+..-.|+  |+.   +++...+|  .|.+.++.+++...   +.             
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~---lt-------------  227 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK---IL-------------  227 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE---ee-------------
Confidence            36777777555443 343334455556776  443   23444444  46666776654211   11             


Q ss_pred             ccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-C----CCcEEEEEcCCc---eeeeeccccCcceEEEEEeC
Q 018591          109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-W----DKTLKVWRVADL---KCLESIKAHDDAVNGLVASK  178 (353)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~----dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~  178 (353)
                                       ...+......|+|  +.|+..+ .    +..+..|++..+   +................|++
T Consensus       228 -----------------~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP  290 (428)
T PRK01029        228 -----------------ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP  290 (428)
T ss_pred             -----------------cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence                             1222334567888  4555433 2    223444776542   33333322223345678843


Q ss_pred             C--eEEEE-cCCCcEEEE--eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccce
Q 018591          179 G--IVYSA-SADGKIKAW--GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRW  250 (353)
Q Consensus       179 ~--~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~  250 (353)
                      +  .|+.. ..+|...+|  ++.....    ....+....... ....|+|||+.|+....+   ..|.+||+.++... 
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~----~~~~lt~~~~~~-~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-  364 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQ----SPRLLTKKYRNS-SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-  364 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECccccc----ceEEeccCCCCc-cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-
Confidence            3  45544 456655555  4432110    122233333333 678999999988765443   36899999877422 


Q ss_pred             eeeeeccccceeEEEEEEcCcEEEEec---CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          251 KLACETKAHEMAVLCVCLVGEFLCSGS---ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                       .... .........++++|+.|+...   ....|+++|+..++.. .+   ....+.+...+|+|.
T Consensus       365 -~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~L---t~~~g~~~~p~Ws~~  425 (428)
T PRK01029        365 -QLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KI---VIGSGEKRFPSWGAF  425 (428)
T ss_pred             -EccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee---ecCCCcccCceecCC
Confidence             1111 111223345667788776433   2457888898876532 22   223455677888875

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.84  E-value=1.8e-06  Score=73.17  Aligned_cols=153  Identities=11%  Similarity=0.108  Sum_probs=101.2

Q ss_pred             ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           18 SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      ..+|++..+++++.|+.-|.+++|+-..++....-. +..+.+..+..+  ..++|.|+..|.|.++.++.........+
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            345555569999999999999999977766554332 233344444444  66788888899999998877442222222


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce----eeeeccccC
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK----CLESIKAHD  168 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~  168 (353)
                      .....                          .|...|++++|++  ..+++|...|.|..-.+.+..    ..+.+-.-.
T Consensus       117 t~~d~--------------------------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d  170 (726)
T KOG3621|consen  117 TPCDK--------------------------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED  170 (726)
T ss_pred             ccccc--------------------------cCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence            21111                          4889999999999  899999999999998887621    122222346


Q ss_pred             cceEEEEEeCCeEEEEcCCCcEEEEeCCC
Q 018591          169 DAVNGLVASKGIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       169 ~~v~~i~~~~~~l~~~~~dg~i~iwd~~~  197 (353)
                      +.|..+...+.+++.++.-.. .+++.+.
T Consensus       171 s~IVQlD~~q~~LLVStl~r~-~Lc~tE~  198 (726)
T KOG3621|consen  171 SEIVQLDYLQSYLLVSTLTRC-ILCQTEA  198 (726)
T ss_pred             cceEEeecccceehHhhhhhh-heeecch
Confidence            778888887776555544333 3444443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.84  E-value=2.4e-05  Score=72.17  Aligned_cols=290  Identities=14%  Similarity=0.093  Sum_probs=162.5

Q ss_pred             ccCceEEEEE--CCcEEEEEeC---C---CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC---CCcEEEE
Q 018591           15 HVGSVSSLAL--CGEFILSASQ---G---KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVW   81 (353)
Q Consensus        15 h~~~v~~~~~--~~~~l~s~~~---d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w   81 (353)
                      +.+.-..|+|  ||+++|+.+.   +   ..+|||+-+ |++..+-+.-.+--.+++|.  |+.+++...   ...|.+|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4556678888  5899998875   2   579999954 77665555444445567775  888887654   2356666


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      .-+..+...+.+-.                             ......|..+.|++  ..|+.-..|. |.+|-..+..
T Consensus       287 ErNGLrhgeF~l~~-----------------------------~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH  336 (928)
T PF04762_consen  287 ERNGLRHGEFTLRF-----------------------------DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH  336 (928)
T ss_pred             ecCCcEeeeEecCC-----------------------------CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence            65443322211110                             13455789999998  6666655544 9999887643


Q ss_pred             --eeeeccc-cCcceEEEEEe---CCeEEEEcCCCcEEEEeC----CCCCc-------------------------cccc
Q 018591          160 --CLESIKA-HDDAVNGLVAS---KGIVYSASADGKIKAWGK----ELGKS-------------------------HCHS  204 (353)
Q Consensus       160 --~~~~~~~-~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~----~~~~~-------------------------~~~~  204 (353)
                        ..+.+.. ....+..+.|+   +..|...+.+|.+..++.    ..+..                         ...+
T Consensus       337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPP  416 (928)
T PF04762_consen  337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPP  416 (928)
T ss_pred             EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCc
Confidence              2223321 12334447773   235555555555544432    11100                         0111


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc----eeeeeec----------cccceeEEEEEEc-
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR----WKLACET----------KAHEMAVLCVCLV-  269 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~----------~~~~~~v~~~~~~-  269 (353)
                      +.....-.-...|..++|++++..+++-..||.+.+|........    .......          .........+.+. 
T Consensus       417 PMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (928)
T PF04762_consen  417 PMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN  496 (928)
T ss_pred             hHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC
Confidence            222222223344699999999888999999999999986543211    0111111          1122334555553 


Q ss_pred             -CcEEEEecC---CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          270 -GEFLCSGSA---DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       270 -~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                       ..+++....   ...+.+++....+....+.....-.+.+..+...++    ...++.-..||.+...+....
T Consensus       497 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~G~v~~~~~~~~  566 (928)
T PF04762_consen  497 DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPD----SGSLYIQTNDGKVFQLSSDGE  566 (928)
T ss_pred             CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCC----CcEEEEEECCCEEEEeecCCC
Confidence             333443333   367888887544332233333334556666666665    444666667898876555443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=2.6e-05  Score=61.17  Aligned_cols=171  Identities=14%  Similarity=0.124  Sum_probs=101.9

Q ss_pred             eEEEEEe-C-CeEEEecCCCcEEEEEcCCceeeeeccc-----cCcceEEEEE-eCCeEEEEcC-C--------CcEEEE
Q 018591          131 ISCLTVY-N-GLIYSGSWDKTLKVWRVADLKCLESIKA-----HDDAVNGLVA-SKGIVYSASA-D--------GKIKAW  193 (353)
Q Consensus       131 i~~~~~~-~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~i~~-~~~~l~~~~~-d--------g~i~iw  193 (353)
                      ...+.+. + +.++.+...+ +.++|..+++.......     .....+.+++ +++.++.+.. .        |.|..+
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~  120 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI  120 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred             CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence            5566666 4 7777777655 55669888755433322     3456788888 4444444432 2        457777


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeeccccccce---eeeeeccccceeE--EEEE
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVEIVRW---KLACETKAHEMAV--LCVC  267 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~v--~~~~  267 (353)
                      +.. ++     ... .......+ +.++|+|+++.|+ +-+..+.|..|++.......   .....+.......  .++.
T Consensus       121 ~~~-~~-----~~~-~~~~~~~p-NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD  192 (246)
T PF08450_consen  121 DPD-GK-----VTV-VADGLGFP-NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD  192 (246)
T ss_dssp             ETT-SE-----EEE-EEEEESSE-EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred             CCC-Ce-----EEE-EecCcccc-cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence            766 33     222 22223444 8999999998765 66778889999986543211   1222233332223  3444


Q ss_pred             EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cC
Q 018591          268 LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PN  314 (353)
Q Consensus       268 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  314 (353)
                      .+|++.++....+.|.+++.+ ++..   ..+.-....+++++|. |+
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~---~~i~~p~~~~t~~~fgg~~  236 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLL---REIELPVPRPTNCAFGGPD  236 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEE---EEEE-SSSSEEEEEEESTT
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEE---EEEcCCCCCEEEEEEECCC
Confidence            458888887788999999987 5633   3233223479999995 44

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.81  E-value=2.2e-05  Score=59.67  Aligned_cols=193  Identities=17%  Similarity=0.178  Sum_probs=111.8

Q ss_pred             ceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccc-------cCcceEEEEE-eCC-------eEEEEcCCCcEEE
Q 018591          130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKA-------HDDAVNGLVA-SKG-------IVYSASADGKIKA  192 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~i~~-~~~-------~l~~~~~dg~i~i  192 (353)
                      .=.-++|+|  ..||.+...|+|+++|+... .+..+..       -...|..+.| ...       .|++-..+|.++-
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            345688998  78999999999999998643 3333322       1346667777 211       6778888899888


Q ss_pred             EeCCCCCc--ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-c
Q 018591          193 WGKELGKS--HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-V  269 (353)
Q Consensus       193 wd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~  269 (353)
                      |-+..+..  -.......+..|-..-|.++.++|..++|++|+....      +.+        .-......++++.. +
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~--------~s~a~~~GLtaWRiL~  189 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG--------MSKASSCGLTAWRILS  189 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc--------cccccccCceEEEEcC
Confidence            87643221  1111222333343334599999999888887765432      000        00011112222222 1


Q ss_pred             --CcEE-EEecCCCe------EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          270 --GEFL-CSGSADKS------IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       270 --~~~l-~~~~~dg~------i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                        +.+. ++...|+.      -.+|.+-+.+   ...........|..|..|||    |..||+...+|.|.+|++.+-.
T Consensus       190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs~~~~~~d~i~kmSlSPd----g~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFSRQGQEQDGIFKMSLSPD----GSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCCcEEEccccCccccccccccceeecccee---eeeccccCCCceEEEEECCC----CCEEEEEEcCCeEEEEecCcch
Confidence              1111 12222221      1233333221   11111224567999999999    9999999999999999999876


Q ss_pred             Cccc
Q 018591          341 STSD  344 (353)
Q Consensus       341 ~~~~  344 (353)
                      ....
T Consensus       263 ~~~~  266 (282)
T PF15492_consen  263 LQRS  266 (282)
T ss_pred             hhcc
Confidence            5543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.81  E-value=8.8e-06  Score=70.31  Aligned_cols=245  Identities=13%  Similarity=0.123  Sum_probs=137.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----e-EEEEEeCCEEEEec---------CCCcEEEEEcccCcccee
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----V-KAVVTVGNKVFTAH---------QDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v-~~~~~~~~~l~s~~---------~dg~i~~w~~~~~~~~~~   91 (353)
                      ..++.++.+|.|+-+|.++|+.+..+......     + .+..+.+..++.++         .+|.+...|.++++..-.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            78888999999999999999999887653321     1 12233356666654         357788888888763221


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecC-Cce-EEEEEeC--CeEEEecCCC------------------c
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSI-SCLTVYN--GLIYSGSWDK------------------T  149 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~~~~~~--~~l~~~~~dg------------------~  149 (353)
                      ..... +. .. ......         .....+ .+. ..+ ....+.+  +.++.++.++                  .
T Consensus       191 ~~~~~-~~-~~-~~~~~~---------~~~~~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~  257 (488)
T cd00216         191 FYTTE-PD-PN-AFPTWG---------PDRQMW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS  257 (488)
T ss_pred             eeccC-CC-cC-CCCCCC---------CCccee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence            11100 00 00 000000         000000 011 111 1233433  6777777665                  7


Q ss_pred             EEEEEcCCceeeeeccccCcce-----------EEEE-EeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          150 LKVWRVADLKCLESIKAHDDAV-----------NGLV-ASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~~~~~v-----------~~i~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      |.-+|..+++.+..++.-....           ..+. ....   .++.++.+|.+...|.++++.     .-...... 
T Consensus       258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~-----~W~~~~~~-  331 (488)
T cd00216         258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL-----ISARPEVE-  331 (488)
T ss_pred             EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE-----eeEeEeec-
Confidence            9999999999988764211111           1111 1122   578888999999999999982     22211110 


Q ss_pred             ceeeEEEEcCCCCeEEe------------------ecCCCcEEEeeccccccceeeeeeccc------cceeEEEEEEcC
Q 018591          215 VSLNSVVVSDDGKWVYG------------------GGSDGFVMGWEGNVEIVRWKLACETKA------HEMAVLCVCLVG  270 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~~  270 (353)
                         ..++.+|  ..++.                  ...+|.+.-.|..+++..|+.......      .......+...+
T Consensus       332 ---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g  406 (488)
T cd00216         332 ---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG  406 (488)
T ss_pred             ---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence               1223333  22222                  224677888888888766655432100      001112234467


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEE
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~  295 (353)
                      ..|++++.||.|+.+|.++++....
T Consensus       407 ~~v~~g~~dG~l~ald~~tG~~lW~  431 (488)
T cd00216         407 NLVFAGAADGYFRAFDATTGKELWK  431 (488)
T ss_pred             CeEEEECCCCeEEEEECCCCceeeE
Confidence            8899999999999999999985444

The alignment model contains an 8-bladed beta-propeller.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.81  E-value=5.2e-06  Score=62.90  Aligned_cols=187  Identities=14%  Similarity=0.095  Sum_probs=105.4

Q ss_pred             EEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc-C------ceeeEEEEEe--------CCEEEEecCCCcEEEEE
Q 018591           20 SSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH-G------DGSVKAVVTV--------GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus        20 ~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~------~~~v~~~~~~--------~~~l~s~~~dg~i~~w~   82 (353)
                      +-++|+  +.+||.+...|+|+++|+...++. .+.. +      ...|..+.|-        ...|+.-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            456775  789999999999999998754433 3322 1      3456666664        22466666777887777


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      +..+....++....+..                        -..+...|.++.++|  ++|++|+....      +.+. 
T Consensus       126 vs~gt~q~y~e~hsfsf------------------------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-  174 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSF------------------------SSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-  174 (282)
T ss_pred             EEcccCCcceeeEEEEe------------------------cccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-
Confidence            64432222222222111                        114577899999999  67777664332      0000 


Q ss_pred             eeeccccCcceEEEEE-e--CC-eEEEEcCCCc------EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          161 LESIKAHDDAVNGLVA-S--KG-IVYSASADGK------IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~-~--~~-~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                         -.+....+++-.. +  |- ..++...|+.      ..+|.+-+.+     .. .........|..|..||||+.|+
T Consensus       175 ---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~-----~f-s~~~~~~d~i~kmSlSPdg~~La  245 (282)
T PF15492_consen  175 ---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK-----FF-SRQGQEQDGIFKMSLSPDGSLLA  245 (282)
T ss_pred             ---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee-----ee-eccccCCCceEEEEECCCCCEEE
Confidence               0112223333333 1  11 2222222221      1233322221     11 11233334459999999999999


Q ss_pred             eecCCCcEEEeeccccc
Q 018591          231 GGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~~  247 (353)
                      +...+|.|.+|++..-.
T Consensus       246 ~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  246 CIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             EEEcCCeEEEEecCcch
Confidence            99999999999998753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=5.4e-07  Score=71.07  Aligned_cols=83  Identities=13%  Similarity=0.182  Sum_probs=72.3

Q ss_pred             CCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRI   78 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i   78 (353)
                      +.+...-+.+|...|..++|+   ..++..++.+..|+|.|+++...+..+..+ ..+++++|+   .++++.|..+|.|
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV  260 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence            445566788899999999997   347899999999999999999999998887 789999998   6789999999999


Q ss_pred             EEEEcccCcc
Q 018591           79 RVWKVSRSSE   88 (353)
Q Consensus        79 ~~w~~~~~~~   88 (353)
                      .+||++..+.
T Consensus       261 lvyD~R~~~~  270 (463)
T KOG1645|consen  261 LVYDMRQPEG  270 (463)
T ss_pred             EEEEccCCCc
Confidence            9999987663

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.2e-06  Score=75.91  Aligned_cols=207  Identities=15%  Similarity=0.219  Sum_probs=135.6

Q ss_pred             ceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcc-eEEEEE-eC-CeEEEEcCCCc-----EEEEeCCCCCcc
Q 018591          130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDA-VNGLVA-SK-GIVYSASADGK-----IKAWGKELGKSH  201 (353)
Q Consensus       130 ~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~-~~-~~l~~~~~dg~-----i~iwd~~~~~~~  201 (353)
                      .++|+.-+...++.|+.+|.|.+.+ ++.+.+..++.+... |..+.. ++ +.|++.+.|+.     +++||++..+..
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            6777666669999999999999988 455666888887777 555554 33 47777777654     899999765322


Q ss_pred             c-ccce---eeee---ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcE
Q 018591          202 C-HSLK---GILE---GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEF  272 (353)
Q Consensus       202 ~-~~~~---~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  272 (353)
                      . ..+.   +.+.   .....++.+++.+.+-+.+++|-.+|.|..+.-.-.........-......+|+.+.+.  +..
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence            2 2222   2222   12345668999999999999999999999985433211112222223345677777763  554


Q ss_pred             -EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          273 -LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       273 -l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                       ++++. -..|.+|.+....  ..+..+..|..++.|-.+++.    ...+++++.. .+.+|+....+.-.+.
T Consensus       186 ~lFv~T-t~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~----t~qfIca~~e-~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  186 VLFVAT-TEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDG----TYQFICAGSE-FLYFYDSDGRGPCFAF  251 (933)
T ss_pred             eEEEEe-cceeEEEEecCCC--cceeeeccCCccceeeecCCC----CccEEEecCc-eEEEEcCCCcceeeee
Confidence             34433 3569999988433  234557778889999999987    4445555544 5888888765544333

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.73  E-value=3.8e-05  Score=57.60  Aligned_cols=108  Identities=17%  Similarity=0.179  Sum_probs=77.6

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEE-eCCEEEEecCCCcEEEEEcccCccc-eeEEeeccccccce
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT-VGNKVFTAHQDSRIRVWKVSRSSEN-VFRLVDTLPTTKDY  103 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~-~~~~~~~~~~~~~~  103 (353)
                      ..+++.|+..+.+.--|.++|....+..- ...|.+-+. -+++++.|+..|.+++.+.++++.- .+....+.      
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v------   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV------   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhh------
Confidence            67899999999999999999998866433 234444433 3999999999999999999988521 11111111      


Q ss_pred             eeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc
Q 018591          104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK  165 (353)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  165 (353)
                                               +.-..++++...+..|+.|+..+..|.++..++...+
T Consensus        96 -------------------------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   96 -------------------------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             -------------------------ccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence                                     1111345555899999999999999999888877654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=1.3e-08  Score=88.00  Aligned_cols=190  Identities=15%  Similarity=0.155  Sum_probs=132.3

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC-C-cE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD-S-RI   78 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g-~i   78 (353)
                      ..+..++|+.|+...+|++|+  .+.|+.|+..|.|+++++.+|........|...|+-+..+  |..+++.+.- . ..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            456778899999999999998  6799999999999999999999999999999999999887  6665544332 2 56


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-CceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      .+|++..-..    .                                .|+ ..-.++.|++  ..-+.|.......+||+
T Consensus      1170 aLW~~~s~~~----~--------------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1170 ALWDASSTGG----P--------------------------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred             HHhccccccC----c--------------------------------cccccccceeehhhhHHHHHhcccccceEEEec
Confidence            7899865221    1                                121 2345777877  44455566677999999


Q ss_pred             CCceeeeeccc----cCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          156 ADLKCLESIKA----HDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       156 ~~~~~~~~~~~----~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      .++.++.++-.    ....-++..|+| +.|+.  .||  .+||.+..+     .++.+.....  ...-.|+|+|..++
T Consensus      1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~-----aIh~FD~ft~--~~~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPE-----AIHRFDQFTD--YGGGGFHPSGNEVI 1282 (1516)
T ss_pred             ccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHH-----HHhhhhhhee--cccccccCCCceEE
Confidence            99887776421    112224555633 33333  233  579998775     4444433332  13456999999888


Q ss_pred             eecCCCcEEEeecccc
Q 018591          231 GGGSDGFVMGWEGNVE  246 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~  246 (353)
                      .-+     .|||+++-
T Consensus      1283 INS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1283 INS-----EIWDMRTF 1293 (1516)
T ss_pred             eec-----hhhhhHHH
Confidence            765     58999876

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.72  E-value=2.7e-05  Score=63.77  Aligned_cols=131  Identities=15%  Similarity=0.151  Sum_probs=93.2

Q ss_pred             CcEEEEEcCCceeeeeccccCcceEEEEEeC--C--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591          148 KTLKVWRVADLKCLESIKAHDDAVNGLVASK--G--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                      ..++++++....+.... .-.++|...+|++  +  -+++|-.+..+.++|++..-        .+....... +.+.|+
T Consensus       255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--------~~~~Pe~~r-NT~~fs  324 (561)
T COG5354         255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--------RFYFPEQKR-NTIFFS  324 (561)
T ss_pred             ceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccce--------EEecCCccc-cccccc
Confidence            56888888744433332 5588999999933  2  34455678889999998652        222333333 789999


Q ss_pred             CCCCeEEeecCC---CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec------CCCeEEEEecCCCc
Q 018591          224 DDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS------ADKSIGIWKREAFG  291 (353)
Q Consensus       224 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~------~dg~i~iw~~~~~~  291 (353)
                      |.+++++.++-|   |.+.+||....   +.....+.+.....+.++++++++.+..      .|..+.|||+....
T Consensus       325 p~~r~il~agF~nl~gni~i~~~~~r---f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         325 PHERYILFAGFDNLQGNIEIFDPAGR---FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             CcccEEEEecCCccccceEEeccCCc---eEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            999999987655   68999998775   3445567777777788888998877664      37889999987643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.62  E-value=6.8e-05  Score=59.47  Aligned_cols=279  Identities=14%  Similarity=0.142  Sum_probs=141.1

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEec----------CCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAH----------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      +++.|.|..+++.+..+...-..-..++.+++.++++.          ..-.|.+||..+-....-.   .+|....   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI---~iP~k~R---   90 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI---EIPPKPR---   90 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE---EETTS-B---
T ss_pred             ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE---ecCCcch---
Confidence            47999999999988777542222222333466666542          3346899998876511110   1111000   


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeCCeEEE--ecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEE
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYS--GSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVY  182 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~  182 (353)
                                       ...........+.-..+++++  .+-...|.+.|+...+.+.++... + ...+-- .++.+.
T Consensus        91 -----------------~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~~~F~  151 (342)
T PF06433_consen   91 -----------------AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGNRGFS  151 (342)
T ss_dssp             -------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEETTEEE
T ss_pred             -----------------heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCCCceE
Confidence                             000000011111111122221  122334566666666666665431 2 122222 556788


Q ss_pred             EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc-----
Q 018591          183 SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK-----  257 (353)
Q Consensus       183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----  257 (353)
                      +.+.||.+....+.............+....+.....-++...+..++--+.+|.|+-.|+......+.....+.     
T Consensus       152 ~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~  231 (342)
T PF06433_consen  152 MLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK  231 (342)
T ss_dssp             EEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred             EEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence            999999999998884332222222333333343434445555555555577889899888877643322222111     


Q ss_pred             -----ccceeEEEEEEcCcEEEEec---C-----CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591          258 -----AHEMAVLCVCLVGEFLCSGS---A-----DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL  322 (353)
Q Consensus       258 -----~~~~~v~~~~~~~~~l~~~~---~-----dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l  322 (353)
                           .......++....+.|++--   .     |+  .|-++|+.+.+   ++..+.. ..++.+|..+.+.   ..+|
T Consensus       232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k---rv~Ri~l-~~~~~Si~Vsqd~---~P~L  304 (342)
T PF06433_consen  232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK---RVARIPL-EHPIDSIAVSQDD---KPLL  304 (342)
T ss_dssp             HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE---EEEEEEE-EEEESEEEEESSS---S-EE
T ss_pred             ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe---EEEEEeC-CCccceEEEccCC---CcEE
Confidence                 01112344444333333321   1     22  46777888877   4444332 3468899999883   4466


Q ss_pred             EE-ccCCCeEEEEEcCCCCCccccc
Q 018591          323 YS-GSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       323 ~s-~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ++ ...++.+.+||..+++.+...+
T Consensus       305 ~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  305 YALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEcCCCCeEEEEeCcCCcEEeehh
Confidence            54 4568999999999998877655

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=2.9e-08  Score=85.88  Aligned_cols=201  Identities=12%  Similarity=0.122  Sum_probs=134.7

Q ss_pred             cccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEc-CCC-cE
Q 018591          117 RRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSAS-ADG-KI  190 (353)
Q Consensus       117 ~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~-~dg-~i  190 (353)
                      +-++.+.+..|....+|++|+.  +.|++|+..|.|+++++.+|........|..+|+.+..  .+..+++.+ ... -.
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            3345566778999999999998  99999999999999999999999999999999999987  333444433 333 46


Q ss_pred             EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc--ceeEEEEEE
Q 018591          191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EMAVLCVCL  268 (353)
Q Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~  268 (353)
                      .+|++...-    .....+...     .++.|+.....-+.|+......+||++++....+......+.  ......++|
T Consensus      1170 aLW~~~s~~----~~~Hsf~ed-----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSFDED-----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             HHhcccccc----Ccccccccc-----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence            789887532    122333221     678888776666667777789999999985444332222221  223344455


Q ss_pred             cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          269 VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +..+++   +||  .+||++..+   .++.+...+..+ .-.|+|.    |.-++.-+     .|||+++.+.+..
T Consensus      1241 ~D~LIl---ndG--vLWDvR~~~---aIh~FD~ft~~~-~G~FHP~----g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPE---AIHRFDQFTDYG-GGGFHPS----GNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred             CcceEe---eCc--eeeeeccHH---HHhhhhhheecc-cccccCC----CceEEeec-----hhhhhHHHHHHhc
Confidence            555554   455  479998765   444444333222 2358898    77777765     4788887765554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.61  E-value=0.00011  Score=57.70  Aligned_cols=196  Identities=16%  Similarity=0.070  Sum_probs=117.1

Q ss_pred             EEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          133 CLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       133 ~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      +..|.+   .++++-...+.|..|+..+++... +....  ...+++  .++.++.+... .+.++|..+++     ...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~-----~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGK-----VTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETT-CEEEEETTTTE-----EEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcC-ceEEEecCCCc-----EEE
Confidence            456664   455555578899999988765543 22222  555666  35677777664 45666988875     222


Q ss_pred             eeec---c-CCceeeEEEEcCCCCeEEeecCC--------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE-E
Q 018591          208 ILEG---H-KDVSLNSVVVSDDGKWVYGGGSD--------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL-C  274 (353)
Q Consensus       208 ~~~~---~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~  274 (353)
                      ....   . .....+.+++.|+|++.++....        |.+..++.. ++.  .... .......-.+++++++.| +
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~-~~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVA-DGLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEE-EEESSEEEEEEETTSSEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEe-cCcccccceEECCcchheee
Confidence            2221   1 33334899999999977765443        456777766 311  1111 112233446667778765 4


Q ss_pred             EecCCCeEEEEecCCCcc-e---EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          275 SGSADKSIGIWKREAFGK-L---CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~-~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +-+..+.|..|++..... +   ..+..+....+..-.+++..+    |++.++.-..+.|.+++.+ ++.+....
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~~p~-G~~~~~i~  221 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVFDPD-GKLLREIE  221 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence            667889999999864332 1   222233333345788999998    8888887788899999977 66554433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=0.00015  Score=57.09  Aligned_cols=252  Identities=11%  Similarity=0.125  Sum_probs=141.3

Q ss_pred             ccCceEEEEEC--CcEEEEEeC---CCcEEEEeCCC--ceeeEE--eccCceeeEEEEEe--CCEEEEec-CCCcEEEEE
Q 018591           15 HVGSVSSLALC--GEFILSASQ---GKDIIVWQQPD--LRMFTK--FGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWK   82 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~---dg~v~vwd~~~--~~~~~~--~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~   82 (353)
                      +.+..+=|+++  ++.|.++-.   +|.|-.|.+..  |++...  ......+-.-++.+  +++++++. .-|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            45567777886  567887755   47777777654  544321  11111222556666  77888775 447899998


Q ss_pred             cccCc-ccee-EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC-CCcEEEEEcCC
Q 018591           83 VSRSS-ENVF-RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW-DKTLKVWRVAD  157 (353)
Q Consensus        83 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~-dg~v~iwd~~~  157 (353)
                      +.... .... ..+...... .                 .   -...+..+.+..+.|  ++|++... --.|.+|++..
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~-p-----------------~---~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d  176 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSG-P-----------------H---ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD  176 (346)
T ss_pred             cccCCccccceeeeecCCCC-C-----------------C---ccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence            86632 1111 111100000 0                 0   001122266778888  56666542 23599999987


Q ss_pred             ceeeeecc---ccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCC--Ccccccceee----eeccCCceeeEEEEcCC
Q 018591          158 LKCLESIK---AHDDAVNGLVASKG---IVYSASADGKIKAWGKELG--KSHCHSLKGI----LEGHKDVSLNSVVVSDD  225 (353)
Q Consensus       158 ~~~~~~~~---~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~~~~~~~v~~~~~~~~  225 (353)
                      ++....-.   .....-..|.|+++   ..+..-.+++|.+|.....  +....+....    +.+...  ...+.++||
T Consensus       177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~--~aaIhis~d  254 (346)
T COG2706         177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW--AAAIHISPD  254 (346)
T ss_pred             CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc--eeEEEECCC
Confidence            65432211   23556789999555   3345556899999998774  2111111111    222222  368899999


Q ss_pred             CCeEEeecC-CCcEEEeeccccccceeeeeeccccc--eeEEEEEEcCcEEEEecC-CCeEEEEecCC
Q 018591          226 GKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKAHE--MAVLCVCLVGEFLCSGSA-DKSIGIWKREA  289 (353)
Q Consensus       226 ~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~-dg~i~iw~~~~  289 (353)
                      |++|.++.. ...|.+|.+........+......+.  ..-..+++++++|+++.. +..|.+|.++.
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            999988754 23677887765533333333333333  333445556888887775 45688887764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=7.4e-05  Score=62.02  Aligned_cols=250  Identities=11%  Similarity=0.042  Sum_probs=134.4

Q ss_pred             EEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEe
Q 018591           38 IIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQ  115 (353)
Q Consensus        38 v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      ...|+.........-....-.-+-+.|+  |.+|++--.. -|.+|--+.-.     .+..+                  
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~-----r~~RF------------------  247 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQ-GIALWGGESFD-----RIQRF------------------  247 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEecc-ceeeecCccHH-----HHHhc------------------
Confidence            4567654332222111112233456677  8888888775 46788643322     11111                  


Q ss_pred             ecccceeeeeecCCceEEEEEeC--CeEEEecC-----------CCcEEEEEcCCceeeeecccc--CcceEE-EEE-eC
Q 018591          116 TRRHHKRLWIEHADSISCLTVYN--GLIYSGSW-----------DKTLKVWRVADLKCLESIKAH--DDAVNG-LVA-SK  178 (353)
Q Consensus       116 ~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~--~~~v~~-i~~-~~  178 (353)
                                .|. .|.-+.|+|  ++|++-+.           ...+.|||+.+|...+.+...  ...+.- ..| .+
T Consensus       248 ----------~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D  316 (698)
T KOG2314|consen  248 ----------YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD  316 (698)
T ss_pred             ----------cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC
Confidence                      233 466788888  77877542           257999999999988887652  233333 334 44


Q ss_pred             CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC----------------C------
Q 018591          179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----------------G------  236 (353)
Q Consensus       179 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g------  236 (353)
                      +.+++.-....|.||+...-.     +.......-.. |....|+|.++.||-=...                .      
T Consensus       317 dKy~Arm~~~sisIyEtpsf~-----lld~Kslki~g-Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n  390 (698)
T KOG2314|consen  317 DKYFARMTGNSISIYETPSFM-----LLDKKSLKISG-IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN  390 (698)
T ss_pred             CceeEEeccceEEEEecCcee-----eecccccCCcc-ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence            444444444678888765432     11111111111 2445555555444322110                0      


Q ss_pred             -----------------------------------cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecC-
Q 018591          237 -----------------------------------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSA-  278 (353)
Q Consensus       237 -----------------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-  278 (353)
                                                         .+.|+.++...    .....-.-...+..++|.  |+.+++-+. 
T Consensus       391 lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd----Ipve~velke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  391 LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD----IPVEVVELKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC----CCceeeecchheeeeeeccCCCeEEEEEcc
Confidence                                               11111111110    000001123345666664  665554332 


Q ss_pred             --CCeEEEEecC-CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc---CCCeEEEEEcCC
Q 018591          279 --DKSIGIWKRE-AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS---LDKSLRVWWVSK  338 (353)
Q Consensus       279 --dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~  338 (353)
                        ..++.+|.++ +...+..+..+..  ...+.+.|+|.    |++++.+.   ..|.+.++|...
T Consensus       467 ~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk----G~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK----GRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             ccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC----CcEEEEEEecccccceEEEecch
Confidence              4678999988 5555555555543  45788999999    99888764   568899999884

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.50  E-value=0.00023  Score=64.81  Aligned_cols=275  Identities=15%  Similarity=0.098  Sum_probs=140.5

Q ss_pred             CceEEEEE--CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           17 GSVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        17 ~~v~~~~~--~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      +.|.++.|  +++.++.+..+|.|.+-|.++.... ....-...|.+++|+  ++.++..+..+++.+-+-.-..     
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~-----  142 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP-----  142 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc-----
Confidence            57888888  3777888888899999987765543 223336688999998  6777777777777654421110     


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCc-eeeeeccccCcc
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADL-KCLESIKAHDDA  170 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~  170 (353)
                       +..-+-..    ..                  ...+..-.+-|-. ..-+-|+. |....-+.... +....... ...
T Consensus       143 -i~E~~L~~----d~------------------~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~-~~~  197 (1265)
T KOG1920|consen  143 -IAEKPLDA----DD------------------ERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQ-DDH  197 (1265)
T ss_pred             -hhcccccc----cc------------------ccccccceecccccceeeecch-hhhcccccccccccccchhh-ccC
Confidence             00000000    00                  0001111111211 11111111 11111111000 00011111 122


Q ss_pred             eEEEEE-eCC-eEEEE----cCC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee---cCCCcEEE
Q 018591          171 VNGLVA-SKG-IVYSA----SAD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG---GSDGFVMG  240 (353)
Q Consensus       171 v~~i~~-~~~-~l~~~----~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i  240 (353)
                      =+.+.| .++ ++++.    ..+ ..|++||.+ +.     +...-....... .+++|-|.|..+++-   ..|+.|.+
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-----Lns~se~~~~l~-~~LsWkPsgs~iA~iq~~~sd~~Ivf  270 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-----LNSTSEPVEGLQ-HSLSWKPSGSLIAAIQCKTSDSDIVF  270 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-----hhcccCcccccc-cceeecCCCCeEeeeeecCCCCcEEE
Confidence            356888 333 55542    223 789999987 43     222222222222 789999999988875   34567888


Q ss_pred             eeccccccceeeeeeccccceeEEEEEEc--CcEEEE---ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591          241 WEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCS---GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA  315 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~---~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  315 (353)
                      |..+.- ....+...++.....+..+.|+  +..|++   ......|++|-..+.. +..-..+.-.....  +.|+|..
T Consensus       271 fErNGL-~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-WYLKq~l~~~~~~~--~~W~p~~  346 (1265)
T KOG1920|consen  271 FERNGL-RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-WYLKQELQFSQKAL--LMWDPVT  346 (1265)
T ss_pred             EecCCc-cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-EEEEEEEecccccc--ccccCCC
Confidence            876543 2223333444445557888886  667776   5555669999987643 21222222222222  6777753


Q ss_pred             CCCCeEEEEccCCCeEEEEEc
Q 018591          316 VGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      +   ..|..-..+|...++++
T Consensus       347 ~---~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  347 E---KTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             c---eeEEEEecCCcEEEEEE
Confidence            2   33333335555555443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.49  E-value=3.5e-06  Score=71.51  Aligned_cols=159  Identities=12%  Similarity=0.120  Sum_probs=99.4

Q ss_pred             ceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccce
Q 018591          130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       130 ~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  206 (353)
                      ..+|++...++++.|+.-|.+++|+-..++....-. +..+.+..+..+  +.++++|+..|.|.++-+....+......
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~  116 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV  116 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence            345666666999999999999999966554433222 223333344443  33778888899999998877442221122


Q ss_pred             eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEe
Q 018591          207 GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWK  286 (353)
Q Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~  286 (353)
                      ..........|++++|++++..+++|...|+|.+-.+.....-......+-.....|.-++.-..+|.+++.-.. .+++
T Consensus       117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~-~Lc~  195 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC-ILCQ  195 (726)
T ss_pred             ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh-heee
Confidence            222221245569999999999999999999999988877311112223333445677777776555555444332 3455


Q ss_pred             cCC
Q 018591          287 REA  289 (353)
Q Consensus       287 ~~~  289 (353)
                      .+.
T Consensus       196 tE~  198 (726)
T KOG3621|consen  196 TEA  198 (726)
T ss_pred             cch
Confidence            544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=0.0002  Score=60.46  Aligned_cols=188  Identities=12%  Similarity=0.021  Sum_probs=108.2

Q ss_pred             ceEEEEEeC--Ce-EEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCC--CcEEEEeCCCC
Q 018591          130 SISCLTVYN--GL-IYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASAD--GKIKAWGKELG  198 (353)
Q Consensus       130 ~i~~~~~~~--~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~d--g~i~iwd~~~~  198 (353)
                      ....-.|+|  +. ++..+.   +..|+++|+.+++...... ..+......|+++   .+++.+.+  ..|.++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            666788888  42 554333   3569999998876654433 3455556678433   33344433  46888888776


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEE
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCS  275 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  275 (353)
                      +     .. .+..+.... ....|+|||+.|+..+. .+  .|.+.|+.++... ..  ...+..  ...++++|+.|+.
T Consensus       268 ~-----~~-~LT~~~~~d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rl--t~~g~~--~~~~SPDG~~Ia~  335 (419)
T PRK04043        268 T-----LT-QITNYPGID-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QV--VFHGKN--NSSVSTYKNYIVY  335 (419)
T ss_pred             c-----EE-EcccCCCcc-CccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eC--ccCCCc--CceECCCCCEEEE
Confidence            5     22 222222222 45679999987766553 33  5777777765321 11  111211  2378888887776


Q ss_pred             ecCC---------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-C--eEEEEEcCCC
Q 018591          276 GSAD---------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-K--SLRVWWVSKQ  339 (353)
Q Consensus       276 ~~~d---------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-g--~i~iw~~~~~  339 (353)
                      ....         ..|.+.|+.+++. ..+..   . .......|+||    |+.++..+.+ +  .+.+.++...
T Consensus       336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~---~-~~~~~p~~SPD----G~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLTA---N-GVNQFPRFSSD----GGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEcCCCcccCCCCcEEEEEECCCCCe-EECCC---C-CCcCCeEECCC----CCEEEEEEccCCcEEEEEEecCCC
Confidence            5543         3688888887652 22222   1 22335789999    8766655443 3  3556666544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.47  E-value=1.5e-07  Score=78.62  Aligned_cols=203  Identities=18%  Similarity=0.186  Sum_probs=126.7

Q ss_pred             cCCceEEEEEeC----CeEEEecCCCcEEEEEcCCcee--eeeccccCcceEEEEEeC---CeEEEEcC----CCcEEEE
Q 018591          127 HADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVASK---GIVYSASA----DGKIKAW  193 (353)
Q Consensus       127 ~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~---~~l~~~~~----dg~i~iw  193 (353)
                      ....+.|+++.-    -.+++|..+|.|.+-..+...-  .....++..+.++++|++   +.|++|-.    |..+.||
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            345566776654    4688899999999998865432  234467788999999933   46666632    5679999


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-cCcE
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEF  272 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~  272 (353)
                      |+.+.-..+........+..... .+++|..+.+.+.+|.....+.++|++........+.+ +.+.  -..+.| .+++
T Consensus       135 di~s~ltvPke~~~fs~~~l~gq-ns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vq--G~tVdp~~~nY  210 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQ-NSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQ--GITVDPFSPNY  210 (783)
T ss_pred             ecccccCCCccccccccccccCc-cccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-hhcc--cceecCCCCCc
Confidence            99877211111111111122222 68888889999999999999999999854211111111 1111  123344 5778


Q ss_pred             EEEecCCCeEEEEe-cCCCcceEEeccccCCCc----CeEEEEeecCCCCCCeEEEEccC-CCeEEEEEcCCC
Q 018591          273 LCSGSADKSIGIWK-REAFGKLCRVGAITGHEG----PVKCLQASPNAVGGGFLLYSGSL-DKSLRVWWVSKQ  339 (353)
Q Consensus       273 l~~~~~dg~i~iw~-~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~  339 (353)
                      +++-. ||.|.+|| ..+-+.  ++..+...+.    .+..++|+|..+  | .|++... .++|+.+++..-
T Consensus       211 ~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrt--g-lla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRT--G-LLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             eeccc-cCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCc--c-hhhhhccCcceEEEeccccc
Confidence            77665 99999999 443332  3333332222    499999999854  3 4555554 578999998643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.45  E-value=0.00028  Score=64.23  Aligned_cols=236  Identities=14%  Similarity=0.087  Sum_probs=137.1

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      ...|.++.|-  .+.++.+..+|.|.+-|.++..   ...+.                              .-...|.+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~---~eivg------------------------------~vd~GI~a  114 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE---LEIVG------------------------------NVDNGISA  114 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccc---eeeee------------------------------eccCceEE
Confidence            3578888886  7778888888999988776654   11221                              34568999


Q ss_pred             EEEeC--CeEEEecCCCcEEEEEcCCceeeeecccc-----CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591          134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAH-----DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSL  205 (353)
Q Consensus       134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  205 (353)
                      ++|+|  ..++..+.++++.+-+ .+..++....-+     .+..-.+-| ....-+-|+. |.....+.....    ..
T Consensus       115 aswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~e----k~  188 (1265)
T KOG1920|consen  115 ASWSPDEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKE----KA  188 (1265)
T ss_pred             EeecCCCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccceeeecch-hhhccccccccc----cc
Confidence            99999  6777777767666554 344443332111     122222333 1111222211 222221111111    01


Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEe-----ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec---
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYG-----GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS---  277 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---  277 (353)
                      ......+. .. +++.|--||+++++     ......|++||.+ +.  ...............++.|+|..+++-.   
T Consensus       189 ~~~~~~~~-~~-~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~  263 (1265)
T KOG1920|consen  189 LEQIEQDD-HK-TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT  263 (1265)
T ss_pred             ccchhhcc-CC-ceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCCCeEeeeeecC
Confidence            11111121 22 67999999999988     3333799999987 31  1222222334455677777888888754   


Q ss_pred             CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE---ccCCCeEEEEEcCCC
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS---GSLDKSLRVWWVSKQ  339 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s---~~~dg~i~iw~~~~~  339 (353)
                      .|+.|.+|..+....-.....+.....++..++|+.+    +..|+.   ......|++|-+.+.
T Consensus       264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~----sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN----SDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCcEEEEecCCccccccccCCcccccchheeeecCC----CCceeeeecccccceEEEEEecCe
Confidence            4667999986643322122223334445999999999    899998   555666999988764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.42  E-value=0.00012  Score=60.75  Aligned_cols=210  Identities=14%  Similarity=0.112  Sum_probs=114.5

Q ss_pred             ceEEEEEeC--CeEEEecCCCcEEEEEcCCcee-------------------------------------------eeec
Q 018591          130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLKC-------------------------------------------LESI  164 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~-------------------------------------------~~~~  164 (353)
                      .|+.+.+.+  ..|++|...|.|.+|.....+.                                           ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            477788877  7888888899998886532111                                           1111


Q ss_pred             cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee--eeccCCceeeEEEEcC-----CC---CeEEeec
Q 018591          165 KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI--LEGHKDVSLNSVVVSD-----DG---KWVYGGG  233 (353)
Q Consensus       165 ~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~-----~~---~~l~~~~  233 (353)
                      ....++|++++. +=++++.|..+|.+.+.|+|............  ........++++.|..     |+   -.+++|.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            234688999998 45699999999999999998776211111111  1222333447787762     33   4688999


Q ss_pred             CCCcEEEeeccc-cccce--eeeeeccccceeEEEEEE---c-C-------------------cEEEEecCCCeEEEEec
Q 018591          234 SDGFVMGWEGNV-EIVRW--KLACETKAHEMAVLCVCL---V-G-------------------EFLCSGSADKSIGIWKR  287 (353)
Q Consensus       234 ~dg~i~i~d~~~-~~~~~--~~~~~~~~~~~~v~~~~~---~-~-------------------~~l~~~~~dg~i~iw~~  287 (353)
                      ..|.+.+|.+.- ....+  .+......+...+..+.+   + |                   .-++....+..++++..
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999999998752 21222  222222234444444432   1 0                   12333344677999998


Q ss_pred             CCCcceEEeccccCCCcCeEEEEee-----cCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          288 EAFGKLCRVGAITGHEGPVKCLQAS-----PNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       288 ~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .+.+.....  + ...-....+.+-     ..    +..|++-..||.|+++.+..-+++....
T Consensus       243 ~~~k~~~K~--~-~~~~~~~~~~vv~~~~~~~----~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  243 PKSKGAHKS--F-DDPFLCSSASVVPTISRNG----GYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             T---EEEEE----SS-EEEEEEEEEEEE-EEE----EEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             CCCccccee--e-ccccccceEEEEeecccCC----ceEEEEEECCCcEEEEECCCchHhhccc
Confidence            876632222  2 222223344443     23    7789999999999999999887776544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=0.00099  Score=56.37  Aligned_cols=206  Identities=7%  Similarity=-0.046  Sum_probs=107.8

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCE-EEEecC---CCcEEEEEcccCccceeEEeeccccccceeeeecc
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNK-VFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMK  109 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (353)
                      ..|.+-|..... .+.+.... ....-.|+  ++. ++..+.   +..|.++|+.+++....   .              
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---t--------------  229 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---A--------------  229 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---e--------------
Confidence            356665654333 33332222 55666776  553 553333   34688888877652111   1              


Q ss_pred             cceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCC--CcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEE
Q 018591          110 QSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWD--KTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVY  182 (353)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~  182 (353)
                                      ...+......|+|  +.+ ++.+.+  ..|.++|+.+++. ..+..+........|++ + .++
T Consensus       230 ----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~  292 (419)
T PRK04043        230 ----------------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIV  292 (419)
T ss_pred             ----------------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEE
Confidence                            2233344566777  334 344333  5688888877654 33433333233446733 3 343


Q ss_pred             -EEcCCC--cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---------CcEEEeeccccccce
Q 018591          183 -SASADG--KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---------GFVMGWEGNVEIVRW  250 (353)
Q Consensus       183 -~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~  250 (353)
                       +....+  .|.+.|+.+++     ..+.... ..   ....|+|+|+.++.....         ..|.+.|+.++..  
T Consensus       293 F~Sdr~g~~~Iy~~dl~~g~-----~~rlt~~-g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--  361 (419)
T PRK04043        293 FVSDRLGYPNIFMKKLNSGS-----VEQVVFH-GK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--  361 (419)
T ss_pred             EEECCCCCceEEEEECCCCC-----eEeCccC-CC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--
Confidence             333333  57778887776     2222211 11   124899999988766543         2577778777632  


Q ss_pred             eeeeeccccceeEEEEEEcCcEEEEecCC---CeEEEEecCCC
Q 018591          251 KLACETKAHEMAVLCVCLVGEFLCSGSAD---KSIGIWKREAF  290 (353)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~d---g~i~iw~~~~~  290 (353)
                      .....  ........++|+|+.|+....+   ..+.+.+++..
T Consensus       362 ~~LT~--~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        362 RRLTA--NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EECCC--CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            11111  1122346678888876654432   24666666553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.36  E-value=0.0014  Score=57.14  Aligned_cols=63  Identities=13%  Similarity=0.152  Sum_probs=47.0

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccCc-eee----------EEEEEeCCEEEEecCCCcEEEEEcccCc
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGD-GSV----------KAVVTVGNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v----------~~~~~~~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      .+..|+.++.++.|+-.|..+|+.+..+.... ..+          ..+.+.+..++.++.|+.+.-.|.++++
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk  141 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGK  141 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCC
Confidence            36677788888999999999999988775321 111          1234456788888899999999998887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PHA02713 hypothetical protein; Provisional

Probab=98.35  E-value=0.0002  Score=62.93  Aligned_cols=190  Identities=9%  Similarity=0.045  Sum_probs=103.5

Q ss_pred             eCCeEEEecCC------CcEEEEEcCCcee--eeeccccCcceEEEEEeCCeEEEEcCCC-----cEEEEeCCCCCcccc
Q 018591          137 YNGLIYSGSWD------KTLKVWRVADLKC--LESIKAHDDAVNGLVASKGIVYSASADG-----KIKAWGKELGKSHCH  203 (353)
Q Consensus       137 ~~~~l~~~~~d------g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~  203 (353)
                      ....++.|+.+      ..+..||..+..-  +..+.............+...+.|+.++     .+..||..+.+-.. 
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-  381 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM-  381 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE-
Confidence            33566667653      3477888776542  2222211222223333555667777654     47889988764211 


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----------------------cEEEeeccccccceeeeeeccccc
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----------------------FVMGWEGNVEIVRWKLACETKAHE  260 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~~  260 (353)
                        ...+....... ..+.  -+++..+.|+.++                       .+..||..++  .|.....+....
T Consensus       382 --~~~mp~~r~~~-~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r  454 (557)
T PHA02713        382 --LPDMPIALSSY-GMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGT  454 (557)
T ss_pred             --CCCCCcccccc-cEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCccc
Confidence              11111111111 1122  2567777777542                       4777888776  344333333333


Q ss_pred             eeEEEEEEcCcEEEEecCC------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC--eEE
Q 018591          261 MAVLCVCLVGEFLCSGSAD------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK--SLR  332 (353)
Q Consensus       261 ~~v~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg--~i~  332 (353)
                      ........++++.+.|+.+      ..+..||..+...+..+..+.........+.+  +    +++.++||.||  .+.
T Consensus       455 ~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~----~~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        455 IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D----NTIMMLHCYESYMLQD  528 (557)
T ss_pred             ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C----CEEEEEeeecceeehh
Confidence            3333455678877888754      24678998862234455555444433333444  3    78999999998  677


Q ss_pred             EEEcCCCC
Q 018591          333 VWWVSKQS  340 (353)
Q Consensus       333 iw~~~~~~  340 (353)
                      .||..+.+
T Consensus       529 ~yd~~~~~  536 (557)
T PHA02713        529 TFNVYTYE  536 (557)
T ss_pred             hcCccccc
Confidence            77777654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.35  E-value=0.00023  Score=58.31  Aligned_cols=181  Identities=13%  Similarity=0.137  Sum_probs=109.9

Q ss_pred             CcEEEEEcCCceeeeecccc-CcceEEEEE---e------CCeEEEEcC----------CCcEEEEeCCCCCccccccee
Q 018591          148 KTLKVWRVADLKCLESIKAH-DDAVNGLVA---S------KGIVYSASA----------DGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~-~~~v~~i~~---~------~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      ..|++.|..+.+.+..+.-. ...+.+++.   .      ..+++.|+.          .|.|.++++.........+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            46888888887777665432 334555544   2      236666643          288999999884111111332


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~  287 (353)
                      ........+|.+++-- ++. ++++. ++.|.+|++.... ........ .....++++...++++++|.....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~-~l~~~~~~-~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK-TLLKKAFY-DSPFYITSLSVFKNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS-SEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc-cchhhhee-cceEEEEEEeccccEEEEEEcccCEEEEEE
Confidence            2222233445777766 343 44443 4789999998874 11222222 233478888888999999999888988865


Q ss_pred             CCC-cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          288 EAF-GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       288 ~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      +.. ..+..+.. ......++++.|-++    ++.++.+..+|.+.++....
T Consensus       157 ~~~~~~l~~va~-d~~~~~v~~~~~l~d----~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  157 DEENNKLILVAR-DYQPRWVTAAEFLVD----EDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTTE-EEEEEE-ESS-BEEEEEEEE-S----SSEEEEEETTSEEEEEEE-S
T ss_pred             EccCCEEEEEEe-cCCCccEEEEEEecC----CcEEEEEcCCCeEEEEEECC
Confidence            542 22333332 234556899999987    66999999999999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.34  E-value=0.00048  Score=51.91  Aligned_cols=106  Identities=13%  Similarity=0.026  Sum_probs=78.8

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL  217 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (353)
                      .+++.|+..+.+.-.|..+++...+-. -...+.+-+. -+++++.|+..|.+++.+.+++.     ....+.....-. 
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs-----~~w~f~~~~~vk-   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGS-----QIWNFVILETVK-   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchh-----heeeeeehhhhc-
Confidence            678889999999999999988776542 2444554444 67789999999999999999996     333333322222 


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK  251 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  251 (353)
                      ......+++..+..|+.|+..+..|.++....++
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence            3455678899999999999999999998754444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=0.0013  Score=55.58  Aligned_cols=117  Identities=9%  Similarity=0.018  Sum_probs=74.2

Q ss_pred             EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC
Q 018591          191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG  270 (353)
Q Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (353)
                      .+|+....+..   ........-...+.+++++|+...++.|+.||.|.+||...+....    ....-.....++.|+|
T Consensus       239 ciYE~~r~klq---rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----~ka~~~P~~iaWHp~g  311 (545)
T PF11768_consen  239 CIYECSRNKLQ---RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----AKAEFIPTLIAWHPDG  311 (545)
T ss_pred             EEEEeecCcee---EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee----eeecccceEEEEcCCC
Confidence            45666554421   1222222233335899999999999999999999999998763221    1112223445556679


Q ss_pred             cEEEEecCCCeEEEEecCCCcc-------------eEEeccccCCCcCeEEEEeecC
Q 018591          271 EFLCSGSADKSIGIWKREAFGK-------------LCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .++++|+..|.+.+||+.-...             .-.+...-.+...+..+.|.+.
T Consensus       312 ai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~  368 (545)
T PF11768_consen  312 AIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA  368 (545)
T ss_pred             cEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence            9999999999999999753211             1111222234556778888854

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.28  E-value=0.0001  Score=65.74  Aligned_cols=137  Identities=13%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             EeCCCcEEEEeCCCceeeEEeccCcee-eEEEEEe-------CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591           32 ASQGKDIIVWQQPDLRMFTKFGHGDGS-VKAVVTV-------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY  103 (353)
Q Consensus        32 ~~~dg~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~-------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  103 (353)
                      ......|+-.|++.|+.+..+..|... |..++.+       +...+.|-.+..+..||.+-....   ++..-      
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k---~v~~~------  570 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK---LVDSQ------  570 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc---eeecc------
Confidence            345678999999999999999887644 7777764       345677777789999998754311   11000      


Q ss_pred             eeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeE
Q 018591          104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIV  181 (353)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l  181 (353)
                                       ... .......+|++... ++||+|+.+|.|++||--..+....+.+-..+|.+|.. .++..
T Consensus       571 -----------------~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  571 -----------------SKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW  632 (794)
T ss_pred             -----------------ccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence                             000 03455688888888 99999999999999994333334445677899999999 55555


Q ss_pred             EEEcCCCcEEEEeC
Q 018591          182 YSASADGKIKAWGK  195 (353)
Q Consensus       182 ~~~~~dg~i~iwd~  195 (353)
                      +.|..+..|.+++.
T Consensus       633 ilaTc~tyLlLi~t  646 (794)
T PF08553_consen  633 ILATCKTYLLLIDT  646 (794)
T ss_pred             EEEeecceEEEEEE
Confidence            55555677888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.27  E-value=0.0018  Score=54.64  Aligned_cols=48  Identities=10%  Similarity=0.293  Sum_probs=38.6

Q ss_pred             cEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEccc
Q 018591           37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~   85 (353)
                      .|++|+. .|+++..+.-..+.+.++.|. ...|+....||.++++|+..
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence            4888885 566676665445899999998 77888999999999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.24  E-value=0.0017  Score=53.25  Aligned_cols=177  Identities=16%  Similarity=0.144  Sum_probs=101.8

Q ss_pred             CcEEEEEcCCc----eeeeec--cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591          148 KTLKVWRVADL----KCLESI--KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       148 g~v~iwd~~~~----~~~~~~--~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (353)
                      |.|.++++.+.    ..+..+  ....++|++++.-++.++++. ++.|.+|++...+    .+...-..+....+.++.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~----~l~~~~~~~~~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSK----TLLKKAFYDSPFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTS----SEEEEEEE-BSSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcc----cchhhheecceEEEEEEe
Confidence            89999999873    122221  234789999998666654444 4899999998775    122222222222335555


Q ss_pred             EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC-------c-
Q 018591          222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF-------G-  291 (353)
Q Consensus       222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~-------~-  291 (353)
                      ..  ++++++|.....+.++..+........... ......++++.+  +++.++++..+|.+.++.....       . 
T Consensus       137 ~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~  213 (321)
T PF03178_consen  137 VF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDP  213 (321)
T ss_dssp             EE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTT
T ss_pred             cc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccc
Confidence            55  559999998888998866553222233322 222444566555  5669999999999999987631       1 


Q ss_pred             ceEEeccccCCCcCeEEE---EeecCCCCCC-----eEEEEccCCCeEEEE
Q 018591          292 KLCRVGAITGHEGPVKCL---QASPNAVGGG-----FLLYSGSLDKSLRVW  334 (353)
Q Consensus       292 ~~~~~~~~~~h~~~v~~~---~~~~~~~~~~-----~~l~s~~~dg~i~iw  334 (353)
                      .+.....+. ....|+++   .+.|. .++.     ..++-++.+|.|.+.
T Consensus       214 ~L~~~~~f~-lg~~v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  214 KLERISSFH-LGDIVNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             BEEEEEEEE--SS-EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cceeEEEEE-CCCccceEEEEEeeec-CCCCcccccceEEEEecCCEEEEE
Confidence            233333332 23467777   55552 1001     357888889988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.24  E-value=0.00013  Score=47.58  Aligned_cols=97  Identities=23%  Similarity=0.322  Sum_probs=66.3

Q ss_pred             eEEEEEeC------CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccc
Q 018591          131 ISCLTVYN------GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       131 i~~~~~~~------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      |++|++..      +.|++|+.|..|++|+-  .+.+.++.. ...|++++. .++.++.+..+|+|-+|+-...     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-----   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-----   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence            45555543      78999999999999984  466777754 567777776 7789999999999999976432     


Q ss_pred             cceeeeeccCCceeeEEEEcC-CC---CeEEeecCCCcEE
Q 018591          204 SLKGILEGHKDVSLNSVVVSD-DG---KWVYGGGSDGFVM  239 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~dg~i~  239 (353)
                       +-+....+.   +.++.+.. ++   ..|++|-.+|.|-
T Consensus        74 -lWRiKSK~~---~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -LWRIKSKNQ---VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -eeeeccCCC---eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             222222222   25555433 32   3688998888774

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.21  E-value=1.7e-06  Score=72.57  Aligned_cols=240  Identities=12%  Similarity=0.138  Sum_probs=135.9

Q ss_pred             eeeEEEEEe----CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591           57 GSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS  132 (353)
Q Consensus        57 ~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  132 (353)
                      ..+.|+++.    ...++.|..+|.|.+-..........                              ....+|....+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~------------------------------E~tp~~ar~Ct  106 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA------------------------------EVTPGYARPCT  106 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccc------------------------------eeccccccccc
Confidence            345555554    24678888999999888766542211                              11126888999


Q ss_pred             EEEEeC---CeEEEec----CCCcEEEEEcCCc--eeeee--ccc-cCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCC
Q 018591          133 CLTVYN---GLIYSGS----WDKTLKVWRVADL--KCLES--IKA-HDDAVNGLVA--SKGIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       133 ~~~~~~---~~l~~~~----~dg~v~iwd~~~~--~~~~~--~~~-~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~  198 (353)
                      +++|++   +.|++|-    .|..+.|||+.++  .+...  +.+ ......+++|  ....+++|.....+.++|++..
T Consensus       107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs  186 (783)
T KOG1008|consen  107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS  186 (783)
T ss_pred             ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence            999998   6666663    4668999999876  22222  222 2344557888  3347888888889999999854


Q ss_pred             CcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeecccc-c-cceeeeeeccccceeEEEEEEc---CcE
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVE-I-VRWKLACETKAHEMAVLCVCLV---GEF  272 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~~~~~~~~~~~v~~~~~~---~~~  272 (353)
                      .      .......... +..+.++| .+.++++-. ||.|.+||.... + +..............+..+++.   ...
T Consensus       187 ~------~~~~svnTk~-vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  187 L------DSVSSVNTKY-VQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             h------hhhhhhhhhh-cccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            3      1111112222 26677788 667777665 999999994322 1 1111111111112246666664   334


Q ss_pred             EEEec-CCCeEEEEecCCCcc--------eEEecc---ccCC--CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          273 LCSGS-ADKSIGIWKREAFGK--------LCRVGA---ITGH--EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       273 l~~~~-~dg~i~iw~~~~~~~--------~~~~~~---~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      +++.. ..++|+++|+..-..        ......   ++..  -..|.+..|++..+  -+..+.+-..-.+.-+++
T Consensus       259 la~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~--~er~il~~~nl~~~Df~V  334 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASP--TERQILGVINLQPKDFSV  334 (783)
T ss_pred             hhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCc--cceeEEeeccCChhhccc
Confidence            55444 567899999753211        001111   2211  24678888887643  233444444434444433

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.21  E-value=0.0025  Score=53.89  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             EEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591          239 MGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      .+|+...++........+ .....+.+++  ++...++.|+.||.|.+||...+..     .+....-.++.++|+|+  
T Consensus       239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-----~~~ka~~~P~~iaWHp~--  310 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-----LLAKAEFIPTLIAWHPD--  310 (545)
T ss_pred             EEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-----eeeeecccceEEEEcCC--
Confidence            456665543222222222 2333444444  4588999999999999999876431     12234456789999999  


Q ss_pred             CCCeEEEEccCCCeEEEEEcCCC
Q 018591          317 GGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       317 ~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                        |.++++|+.-|.+.+||+.-.
T Consensus       311 --gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  311 --GAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             --CcEEEEEcCCceEEEEEeecC
Confidence              999999999999999998754

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.19  E-value=0.00027  Score=46.11  Aligned_cols=62  Identities=18%  Similarity=0.286  Sum_probs=48.7

Q ss_pred             eEEEEE---C---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEc
Q 018591           19 VSSLAL---C---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus        19 v~~~~~---~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~   83 (353)
                      |++|++   +   .+.|+.|+.|..||+|+-  .+.+.++.. ...|.+++.. +..++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            677776   2   368999999999999984  366666665 4567777665 888999999999999975

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=2.8e-06  Score=62.21  Aligned_cols=143  Identities=20%  Similarity=0.165  Sum_probs=87.5

Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH  259 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  259 (353)
                      .+...+.||.|+-++++..+...    +....+...    .....-+..+++|+.+|.|.+|+.........   .....
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~----rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---~~~s~  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESC----RSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---RVCSG  100 (238)
T ss_pred             hhccccCCcccccchhhhhhhhh----hhhhhhhcc----eeecccCceEEeecccceEEEecCCccchHHH---hhhcc
Confidence            55666788999888887654111    111111111    11112345799999999999998874311111   11222


Q ss_pred             ceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCC-cCeEEEEeecCCCCCCeEEEEc--cCCCeEEE
Q 018591          260 EMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE-GPVKCLQASPNAVGGGFLLYSG--SLDKSLRV  333 (353)
Q Consensus       260 ~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~l~s~--~~dg~i~i  333 (353)
                      ...+.+.-|.   +.+..+++.||.||.|++...+   .+.....|+ .++..+..+..    ++.++.+  |.|..++.
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---~~g~~g~h~~~~~e~~ivv~s----d~~i~~a~~S~d~~~k~  173 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---VLGYVGQHNFESGEELIVVGS----DEFLKIADTSHDRVLKK  173 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeeccccCc---eeeeeccccCCCcceeEEecC----CceEEeeccccchhhhh
Confidence            3344455554   4588899999999999998776   444445566 45555555555    6677777  77778888


Q ss_pred             EEcCCCC
Q 018591          334 WWVSKQS  340 (353)
Q Consensus       334 w~~~~~~  340 (353)
                      |+++.-.
T Consensus       174 W~ve~~~  180 (238)
T KOG2444|consen  174 WNVEKIK  180 (238)
T ss_pred             cchhhhh
Confidence            8776543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.16  E-value=0.0011  Score=56.10  Aligned_cols=185  Identities=17%  Similarity=0.095  Sum_probs=90.9

Q ss_pred             ceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591          130 SISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       130 ~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  208 (353)
                      .-..+.|.+ +.+++-..++.|.++.--+.+....++. ...+..|-. +..|... .++.|.+||+.+++     ..+.
T Consensus        70 ~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~-G~LL~~~-~~~~i~~yDw~~~~-----~i~~  141 (443)
T PF04053_consen   70 SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG-GNLLGVK-SSDFICFYDWETGK-----LIRR  141 (443)
T ss_dssp             E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE--SSSEEEE-ETTEEEEE-TTT-------EEEE
T ss_pred             ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc-CcEEEEE-CCCCEEEEEhhHcc-----eeeE
Confidence            334567777 7888888888999974223333234432 223444433 4444444 45589999999987     5555


Q ss_pred             eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc-------ceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV-------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKS  281 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  281 (353)
                      +....   |..+.|++++.+++..+.+ .+.+++......       ..........-...|.+..|.++.++-.... .
T Consensus       142 i~v~~---vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~  216 (443)
T PF04053_consen  142 IDVSA---VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-H  216 (443)
T ss_dssp             ESS-E----EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-E
T ss_pred             EecCC---CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-e
Confidence            55432   4899999999999988866 577776544300       0001111111245666777776655444444 5


Q ss_pred             EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      ++.  +-.++    ...+..-..++.=+...|.    .+.+.....|+.|..+.+.
T Consensus       217 lkY--l~~Ge----~~~i~~ld~~~yllgy~~~----~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  217 LKY--LVNGE----TGIIAHLDKPLYLLGYLPK----ENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEE--EETTE----EEEEEE-SS--EEEEEETT----TTEEEEE-TT--EEEEE--
T ss_pred             EEE--EEcCC----cceEEEcCCceEEEEEEcc----CCEEEEEECCCCEEEEEEC
Confidence            655  33332    1122222456777788886    6688888899999888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.15  E-value=0.0017  Score=57.15  Aligned_cols=193  Identities=16%  Similarity=0.223  Sum_probs=111.2

Q ss_pred             EEEEeC-CeEEEecCC------CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcCCCc-----EEEEeCCCC
Q 018591          133 CLTVYN-GLIYSGSWD------KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASADGK-----IKAWGKELG  198 (353)
Q Consensus       133 ~~~~~~-~~l~~~~~d------g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~dg~-----i~iwd~~~~  198 (353)
                      +++..+ ...++|+.|      ..+..||..+.+-.  ..+.............+...++|+.||.     +-.||..+.
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~  406 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN  406 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC
Confidence            444444 677888888      35778887765522  2232222222223335557888888864     677888776


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC------cEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      +-..   .........   ..-...-+|...++|+.++      .+..||..++  .|..................++.+
T Consensus       407 ~W~~---va~m~~~r~---~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~~~~i  478 (571)
T KOG4441|consen  407 KWTP---VAPMLTRRS---GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVLNGKI  478 (571)
T ss_pred             cccc---cCCCCccee---eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEECCEE
Confidence            5221   111111111   1122223577778887554      5678888876  344444444444444566678889


Q ss_pred             EEEecCCCe-----EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC-----eEEEEEcCCCC
Q 018591          273 LCSGSADKS-----IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK-----SLRVWWVSKQS  340 (353)
Q Consensus       273 l~~~~~dg~-----i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~  340 (353)
                      .+.||.|+.     |..||..+.+ +..+..+......+-...+.      +...+.|+.||     +|..||..+.+
T Consensus       479 YvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g~~~~~------~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  479 YVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVGVVVLG------GKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EEECCccCCCccceEEEEcCCCCc-eeEcccCccccccccEEEEC------CEEEEEecccCccccceeEEcCCCCCc
Confidence            999998763     7778887743 33443344333333333333      67888898886     56667655543

>PHA02713 hypothetical protein; Provisional

Probab=98.14  E-value=0.00079  Score=59.29  Aligned_cols=149  Identities=11%  Similarity=0.058  Sum_probs=83.4

Q ss_pred             EEeCCeEEEecCCC-----cEEEEEcCCce--eeeeccccCcceEEEEEeCCeEEEEcCCC-------------------
Q 018591          135 TVYNGLIYSGSWDK-----TLKVWRVADLK--CLESIKAHDDAVNGLVASKGIVYSASADG-------------------  188 (353)
Q Consensus       135 ~~~~~~l~~~~~dg-----~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~l~~~~~dg-------------------  188 (353)
                      .......+.|+.++     .+..||..+.+  .+..+.........+...+...+.|+.++                   
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence            33346667777654     47889987643  22222222222222333555666666542                   


Q ss_pred             ----cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC------CcEEEeeccc-cccceeeeeecc
Q 018591          189 ----KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD------GFVMGWEGNV-EIVRWKLACETK  257 (353)
Q Consensus       189 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~  257 (353)
                          .+..||..+.+-..   ...+......  .+++ .-+++..+.|+.+      ..+..||..+ +  .|.....+.
T Consensus       429 ~~~~~ve~YDP~td~W~~---v~~m~~~r~~--~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~  500 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWET---LPNFWTGTIR--PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTE  500 (557)
T ss_pred             cccceEEEECCCCCeEee---cCCCCccccc--CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccC
Confidence                46778887765211   1111111111  1222 2245666667654      2467888887 4  355555666


Q ss_pred             ccceeEEEEEEcCcEEEEecCCC--eEEEEecCCCc
Q 018591          258 AHEMAVLCVCLVGEFLCSGSADK--SIGIWKREAFG  291 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~dg--~i~iw~~~~~~  291 (353)
                      ...........++.+.++|+.++  .+..||..+.+
T Consensus       501 ~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        501 SRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             cccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence            55556666667899999999888  77888887754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.14  E-value=0.00017  Score=63.20  Aligned_cols=69  Identities=10%  Similarity=0.074  Sum_probs=59.3

Q ss_pred             ceEEEEECC--cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           18 SVSSLALCG--EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        18 ~v~~~~~~~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      .+++++|+.  -.|+.|-.-|.+.+|...+.+.......|+.+|..+.|+  |+.++++..-|.+.+|..+..
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence            356788883  367778888999999998888888888999999999998  899999999999999998743

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.10  E-value=0.0055  Score=53.63  Aligned_cols=270  Identities=11%  Similarity=0.108  Sum_probs=138.3

Q ss_pred             EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC--c--eeeEE-EEEeCCEEEEecC------CCcEEEEEcccCccce
Q 018591           22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG--D--GSVKA-VVTVGNKVFTAHQ------DSRIRVWKVSRSSENV   90 (353)
Q Consensus        22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~--~~v~~-~~~~~~~l~s~~~------dg~i~~w~~~~~~~~~   90 (353)
                      +++.+..++.++.|+.|.-.|..+|+.+......  .  ..+.+ -...++.++.+..      +|.|..+|.++++..-
T Consensus       116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW  195 (527)
T TIGR03075       116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW  195 (527)
T ss_pred             ceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence            3455667888889999999999999998776432  1  11211 1223556666542      6889999998887321


Q ss_pred             eEEeecccccccee-eeecccceeEeecccceeeeeecCCceE-EEEEeC--CeEEEecCC----------------CcE
Q 018591           91 FRLVDTLPTTKDYL-GKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYN--GLIYSGSWD----------------KTL  150 (353)
Q Consensus        91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~--~~l~~~~~d----------------g~v  150 (353)
                      .  ....+...... ..............-....+..-...+. .+++.+  ++++.+..+                ..|
T Consensus       196 ~--~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~  273 (527)
T TIGR03075       196 R--RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI  273 (527)
T ss_pred             e--ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence            1  11111110000 0000000000000000000100111121 234444  445544411                267


Q ss_pred             EEEEcCCceeeeeccccCcceEE---------EEE--eCC---eEEEEcCCCcEEEEeCCCCCcccc---cceeee----
Q 018591          151 KVWRVADLKCLESIKAHDDAVNG---------LVA--SKG---IVYSASADGKIKAWGKELGKSHCH---SLKGIL----  209 (353)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~v~~---------i~~--~~~---~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~----  209 (353)
                      .-.|+++++....++.....+..         +..  .+.   .++.+..+|.+.+.|.++++....   ......    
T Consensus       274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~  353 (527)
T TIGR03075       274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV  353 (527)
T ss_pred             EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence            88899999988777543222222         122  222   677899999999999998874200   000000    


Q ss_pred             e---------------------------ccCC-ceeeEEEEcCCCCeEEeecCC--------------------------
Q 018591          210 E---------------------------GHKD-VSLNSVVVSDDGKWVYGGGSD--------------------------  235 (353)
Q Consensus       210 ~---------------------------~~~~-~~v~~~~~~~~~~~l~~~~~d--------------------------  235 (353)
                      .                           +..+ ..-..++++|+..+++....+                          
T Consensus       354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  433 (527)
T TIGR03075       354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK  433 (527)
T ss_pred             CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence            0                           0000 000225666766555544333                          


Q ss_pred             -------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          236 -------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       236 -------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                             |.+.-+|+.+++..++...........   +...+.+++.+..+|.++.+|.++++.+...
T Consensus       434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~---l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV---LATAGDLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             CCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc---eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence                   346666777765555443322211111   2335667888888999999999999965544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>smart00320 WD40 WD40 repeats

Probab=98.07  E-value=1.3e-05  Score=41.93  Aligned_cols=37  Identities=38%  Similarity=0.699  Sum_probs=32.5

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEe
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQ   42 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd   42 (353)
                      ++++..+.+|...|+++.|+  ++++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            56778888999999999996  67999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.01  E-value=0.0046  Score=49.46  Aligned_cols=231  Identities=13%  Similarity=0.114  Sum_probs=121.3

Q ss_pred             ECCcEEEEEeCCCcEEEEeCCC-ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591           24 LCGEFILSASQGKDIIVWQQPD-LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT  100 (353)
Q Consensus        24 ~~~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  100 (353)
                      -.++.|+.|..+| +.+++... ........  ...|..+...  -+.+++-+ |+.+.+++++.-...........+..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3588999999998 99999833 33333332  2238877776  34444443 49999999876542211100000000


Q ss_pred             cceeeeecccceeEeecccceeeeeecCCceEEEE----EeCCeEEEecCCCcEEEEEcCCc-----eeeeeccccCcce
Q 018591          101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT----VYNGLIYSGSWDKTLKVWRVADL-----KCLESIKAHDDAV  171 (353)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v  171 (353)
                      ..                  ...-......+..++    ......++......|.+|.....     +..+++.- ...+
T Consensus        81 ~~------------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~  141 (275)
T PF00780_consen   81 RS------------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPP  141 (275)
T ss_pred             cc------------------ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCc
Confidence            00                  000002223344444    11133333444458888877542     34455543 5788


Q ss_pred             EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-----------cCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591          172 NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-----------HKDVSLNSVVVSDDGKWVYGGGSDGFVMG  240 (353)
Q Consensus       172 ~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  240 (353)
                      .+++|.++.++.|..+ ...+.|+.++.     ....+..           ....++..+.. +++.+|++-  +..-..
T Consensus       142 ~~i~~~~~~i~v~~~~-~f~~idl~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~f  212 (275)
T PF00780_consen  142 SSIAFLGNKICVGTSK-GFYLIDLNTGS-----PSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVF  212 (275)
T ss_pred             EEEEEeCCEEEEEeCC-ceEEEecCCCC-----ceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEE
Confidence            9999988888877754 48888998765     2222111           11122123333 344555543  333333


Q ss_pred             eeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591          241 WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      .|.... .........   ......+.+...+|++...++ |.||++.+++
T Consensus       213 v~~~G~-~~r~~~i~W---~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~  258 (275)
T PF00780_consen  213 VNKNGE-PSRKSTIQW---SSAPQSVAYSSPYLIAFSSNS-IEVRSLETGE  258 (275)
T ss_pred             EcCCCC-cCcccEEEc---CCchhEEEEECCEEEEECCCE-EEEEECcCCc
Confidence            344332 111111111   224456666777888776654 9999999987

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.98  E-value=0.003  Score=55.63  Aligned_cols=226  Identities=14%  Similarity=0.191  Sum_probs=125.8

Q ss_pred             CcEEEEEeCCC------cEEEEeCCCceeeEE--eccCceeeEEEEEe-CCEEEEecCC-C-----cEEEEEcccCccce
Q 018591           26 GEFILSASQGK------DIIVWQQPDLRMFTK--FGHGDGSVKAVVTV-GNKVFTAHQD-S-----RIRVWKVSRSSENV   90 (353)
Q Consensus        26 ~~~l~s~~~dg------~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~-~~~l~s~~~d-g-----~i~~w~~~~~~~~~   90 (353)
                      +.+++.|+.++      .+..+|..+++-...  +..... -.+++.. +...++|+.| |     .+..||....+   
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~---  360 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ---  360 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCc---
Confidence            66778887773      688888877643322  222222 3334443 6677788888 3     45667766654   


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCc-----EEEEEcCCce--eeee
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKT-----LKVWRVADLK--CLES  163 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~--~~~~  163 (353)
                      +..+..+..                           ...............++|+.||.     +..||..+.+  .+..
T Consensus       361 W~~~a~M~~---------------------------~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~  413 (571)
T KOG4441|consen  361 WTPVAPMNT---------------------------KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP  413 (571)
T ss_pred             eeccCCccC---------------------------ccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC
Confidence            222222221                           11122223333467788888864     6677766543  2222


Q ss_pred             ccccCcceEEEEEeCCeEEEEcCCC------cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          164 IKAHDDAVNGLVASKGIVYSASADG------KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       164 ~~~~~~~v~~i~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      +...........+.+...++|+.++      ++..||..++.-.........+..     ..++ .-++...+.|+.|+.
T Consensus       414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-----~g~a-~~~~~iYvvGG~~~~  487 (571)
T KOG4441|consen  414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-----FGVA-VLNGKIYVVGGFDGT  487 (571)
T ss_pred             CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-----ceEE-EECCEEEEECCccCC
Confidence            2221222222333555667777544      467888887763222222222221     1122 234667788887763


Q ss_pred             -----EEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-----eEEEEecCCC
Q 018591          238 -----VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-----SIGIWKREAF  290 (353)
Q Consensus       238 -----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iw~~~~~  290 (353)
                           |..||..+.  .|............+-....++...++|+.||     +|..||..+.
T Consensus       488 ~~~~~VE~ydp~~~--~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  488 SALSSVERYDPETN--QWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             CccceEEEEcCCCC--ceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence                 777888876  34555555555666666677888889998876     4666666553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.96  E-value=0.0058  Score=48.89  Aligned_cols=231  Identities=16%  Similarity=0.092  Sum_probs=127.0

Q ss_pred             eCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE
Q 018591           65 VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY  142 (353)
Q Consensus        65 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~  142 (353)
                      .++.|+.|..+| +.+++...... ....                                .+...|..+...+  +.++
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~-~~~i--------------------------------~~~~~I~ql~vl~~~~~ll   51 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSK-PTRI--------------------------------LKLSSITQLSVLPELNLLL   51 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCcc-ceeE--------------------------------eecceEEEEEEecccCEEE
Confidence            378899999888 88888822220 0111                                2333488888888  5555


Q ss_pred             EecCCCcEEEEEcCCceeeeec--------------cccCcceEEEE-E---eCCeEEEEcCCCcEEEEeCCCCCccccc
Q 018591          143 SGSWDKTLKVWRVADLKCLESI--------------KAHDDAVNGLV-A---SKGIVYSASADGKIKAWGKELGKSHCHS  204 (353)
Q Consensus       143 ~~~~dg~v~iwd~~~~~~~~~~--------------~~~~~~v~~i~-~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~  204 (353)
                      +-+ |+.+.++++........-              ......+...+ .   .+...+......+|.+|...........
T Consensus        52 vLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~  130 (275)
T PF00780_consen   52 VLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK  130 (275)
T ss_pred             EEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccc
Confidence            554 599999998765443311              11233455555 1   2334444555568999888764211101


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec--------cccceeEEEEEEc-CcEEEE
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET--------KAHEMAVLCVCLV-GEFLCS  275 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~v~~~~~~-~~~l~~  275 (353)
                      ..+.+.-. . .+..++|.  ++.++.|..++ ..+.|+.++....-+....        .....++..+..+ +.+|++
T Consensus       131 ~~ke~~lp-~-~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~  205 (275)
T PF00780_consen  131 LLKEISLP-D-PPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC  205 (275)
T ss_pred             eeEEEEcC-C-CcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE
Confidence            33333333 2 24888888  45677776554 8888888653221110000        0112234444444 455554


Q ss_pred             ecCCCeEEEEecCCCcceE-EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCC
Q 018591          276 GSADKSIGIWKREAFGKLC-RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK  348 (353)
Q Consensus       276 ~~~dg~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  348 (353)
                      -  |..-.+.|. .|+... ....+   ...+.++++..      .+|+..+.+ .|.||++.+++.++....+
T Consensus       206 ~--~~~g~fv~~-~G~~~r~~~i~W---~~~p~~~~~~~------pyli~~~~~-~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  206 Y--DNIGVFVNK-NGEPSRKSTIQW---SSAPQSVAYSS------PYLIAFSSN-SIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             e--cceEEEEcC-CCCcCcccEEEc---CCchhEEEEEC------CEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence            2  333333343 333211 11112   23566777764      477777665 4999999999988877654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=97.91  E-value=2.6e-05  Score=40.73  Aligned_cols=37  Identities=35%  Similarity=0.640  Sum_probs=32.3

Q ss_pred             EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      ....+..|...|.++.|.+.    +.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPD----GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCC----CCEEEEecCCCeEEEcC
Confidence            34456678889999999998    88999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.90  E-value=0.013  Score=50.98  Aligned_cols=101  Identities=17%  Similarity=0.072  Sum_probs=62.1

Q ss_pred             CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccccccce--------eeeeecc
Q 018591          187 DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRW--------KLACETK  257 (353)
Q Consensus       187 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~--------~~~~~~~  257 (353)
                      ++.|.+.|.++...........+.... .+ ..+.++|||+++++++. +..+.++|+...+..+        ....+..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sP-HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPK-NP-HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCC-Cc-cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            567889998871000001333333332 23 88999999998876654 8899999998753211        1122222


Q ss_pred             cccee-EEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591          258 AHEMA-VLCVCLVGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       258 ~~~~~-v~~~~~~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      ...++ -+.+..+|+...+-.-|..|..||+..
T Consensus       373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            12222 344555577778888899999999875

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.0091  Score=46.26  Aligned_cols=242  Identities=15%  Similarity=0.067  Sum_probs=148.8

Q ss_pred             ceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591           56 DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT  135 (353)
Q Consensus        56 ~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  135 (353)
                      .+.+..+.+++++.+.+..+.-+++.|+.+.....  .+..+                            .-.+--.++.
T Consensus        86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~--~~~~l----------------------------nt~gyaygv~  135 (370)
T COG5276          86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPT--LIGFL----------------------------NTDGYAYGVY  135 (370)
T ss_pred             hhhhheeEecccEEEEEcCCCceEEEeccCCCCcc--eeccc----------------------------cCCceEEEEE
Confidence            45666777889999999999999999998875211  11111                            1124456677


Q ss_pred             EeCCeEEEecCCCcEEEEEcCCc---eeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeecc
Q 018591          136 VYNGLIYSGSWDKTLKVWRVADL---KCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGH  212 (353)
Q Consensus       136 ~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  212 (353)
                      .+.++..++..|.-+.+.|+.+.   ....++......-..++.++++-..+..|+-+.+-|+.+...    +...-...
T Consensus       136 vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~s----Pvli~~~n  211 (370)
T COG5276         136 VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHS----PVLIGSYN  211 (370)
T ss_pred             ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCC----CeEEEEEe
Confidence            77788888887777888888653   334455544555578888999999999999999999987651    22221222


Q ss_pred             CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591          213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      .+.-+.++..+++..+++...  .-+.+-|.......+.+-.........+..+...+++......+.-+.+-|+.+...
T Consensus       212 ~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s  289 (370)
T COG5276         212 TGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS  289 (370)
T ss_pred             cCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence            232347778887766665543  336777776653322222222222333444566788888888888888888887655


Q ss_pred             eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +.....+......-..+..+      +.++..+..+ ...+-+....+
T Consensus       290 pfl~ss~~t~g~~a~gi~ay------~~y~yiadkn-~g~vV~~s~~s  330 (370)
T COG5276         290 PFLSSSLDTAGYQAAGIRAY------GNYNYIADKN-TGAVVDASPPS  330 (370)
T ss_pred             CchhccccCCCccccceEEe------cCeeEeccCC-ceEEEeCCChh
Confidence            43333333222233444444      3455555544 44445555443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.76  E-value=0.012  Score=46.45  Aligned_cols=203  Identities=12%  Similarity=0.136  Sum_probs=116.7

Q ss_pred             EEEEeC---CeEEEecCCCc-EEEEEcCCceeeeeccccCcce--EEEEEe-CC-eEEEE-----cCCCcEEEEeCCCCC
Q 018591          133 CLTVYN---GLIYSGSWDKT-LKVWRVADLKCLESIKAHDDAV--NGLVAS-KG-IVYSA-----SADGKIKAWGKELGK  199 (353)
Q Consensus       133 ~~~~~~---~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~v--~~i~~~-~~-~l~~~-----~~dg~i~iwd~~~~~  199 (353)
                      .++.+|   ..++.+-.-|. ..+||..+++....+....+.-  -.-.|+ ++ +|++.     ...|.|-+||....-
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            344555   45555655554 6789999988887765433221  123453 33 55554     335889999998332


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecC------------------CCcEEEeeccccccceeeeeeccccce
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS------------------DGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                          .....+..+.-.+ ..+.+.||++.|+++..                  +..+.+.|..++....+.......|..
T Consensus        89 ----~ri~E~~s~GIGP-Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   89 ----RRIGEFPSHGIGP-HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             ----EEEeEecCCCcCh-hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence                2566677777666 88999999987777632                  123444455555322221111133556


Q ss_pred             eEEEEEEc--CcEEEEecCCC-------eEEEEecCCCcceEEec----cccCCCcCeEEEEeecCCCCCCeEE-EEccC
Q 018591          262 AVLCVCLV--GEFLCSGSADK-------SIGIWKREAFGKLCRVG----AITGHEGPVKCLQASPNAVGGGFLL-YSGSL  327 (353)
Q Consensus       262 ~v~~~~~~--~~~l~~~~~dg-------~i~iw~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~l-~s~~~  327 (353)
                      .+..++.+  |..++..-..|       -|.+++...  .+..+.    ....-.+.+-+|+++++    +.++ +|+=.
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~----g~~ia~tsPr  237 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRD----GRLIAVTSPR  237 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCC----CCEEEEECCC
Confidence            66666665  33333332222       233333322  111111    12234567899999998    7655 55666


Q ss_pred             CCeEEEEEcCCCCCccccc
Q 018591          328 DKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       328 dg~i~iw~~~~~~~~~~~~  346 (353)
                      -|.+.+||..+++.+....
T Consensus       238 Gg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  238 GGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCEEEEEECCCCCEeeccc
Confidence            7899999999988766543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.73  E-value=0.029  Score=51.14  Aligned_cols=62  Identities=11%  Similarity=0.179  Sum_probs=45.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCcee--------eEEEEE------------------eCCEEEEecCCCcEE
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS--------VKAVVT------------------VGNKVFTAHQDSRIR   79 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--------v~~~~~------------------~~~~l~s~~~dg~i~   79 (353)
                      +..|+.++.++.|.-.|..+|+.+..+......        ...+.+                  .++.++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            667888888999999999999999887543211        112222                  134788888999999


Q ss_pred             EEEcccCc
Q 018591           80 VWKVSRSS   87 (353)
Q Consensus        80 ~w~~~~~~   87 (353)
                      -.|.++++
T Consensus       274 ALDA~TGk  281 (764)
T TIGR03074       274 ALDADTGK  281 (764)
T ss_pred             EEECCCCC
Confidence            99988887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.014  Score=45.32  Aligned_cols=277  Identities=14%  Similarity=0.102  Sum_probs=163.4

Q ss_pred             CceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEecc--CceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           17 GSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGH--GDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      +-+..+.+++++...+..+.-++|.|+.+.+....+..  ..+--.++..+|++...+..|.-+.+.|+.+.+.....-.
T Consensus        87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr  166 (370)
T COG5276          87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR  166 (370)
T ss_pred             hhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence            44556677789999999989999999877654333321  1255667777799999998777788899987764332222


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce---eeeeccccCcce
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAV  171 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v  171 (353)
                      ..                             .....-..++.+.++...+..|+-+.+-|+.+..   .+.... ....+
T Consensus       167 ya-----------------------------~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~  216 (370)
T COG5276         167 YA-----------------------------LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGT  216 (370)
T ss_pred             ec-----------------------------cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCce
Confidence            11                             2223335677888888888899999999987543   233322 23367


Q ss_pred             EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591          172 NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK  251 (353)
Q Consensus       172 ~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  251 (353)
                      .++..++++....-.+--+.+-|..+.+.  .......+......++.+..  .+++......+.-+.+-|+...... .
T Consensus       217 ~sv~vsdnr~y~vvy~egvlivd~s~~ss--p~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp~sp-f  291 (370)
T COG5276         217 YSVSVSDNRAYLVVYDEGVLIVDVSGPSS--PTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNPPSP-F  291 (370)
T ss_pred             EEEEecCCeeEEEEcccceEEEecCCCCC--ceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCCCCC-c
Confidence            78888888666666666677778776651  01112222222211122233  4566666666666777777664211 1


Q ss_pred             eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                      +...+.........+...+.++..+..+ ...+-+....+   ......+-...+.+.+.+-+    .+.+.+...++-+
T Consensus       292 l~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~----~q~~y~~d~~~gl  363 (370)
T COG5276         292 LSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPS---MMDKRPGRPTIGQSCDVSVD----TQIIYSTDYNGGL  363 (370)
T ss_pred             hhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChh---hcccccCcceEeeecceEEE----eeEEEEeecCCCE
Confidence            1112221222334445556666666555 44555554433   12222222233444444444    6788888999999


Q ss_pred             EEEEc
Q 018591          332 RVWWV  336 (353)
Q Consensus       332 ~iw~~  336 (353)
                      .+|+.
T Consensus       364 ~i~~~  368 (370)
T COG5276         364 SIIEY  368 (370)
T ss_pred             EEEEe
Confidence            99985

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.69  E-value=0.014  Score=45.21  Aligned_cols=201  Identities=10%  Similarity=0.013  Sum_probs=106.3

Q ss_pred             ecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-eCCeEEEEc-CCCcEEEEeCCCCC
Q 018591          126 EHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-SKGIVYSAS-ADGKIKAWGKELGK  199 (353)
Q Consensus       126 ~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~~~~l~~~~-~dg~i~iwd~~~~~  199 (353)
                      +-...+..++|+|   .++++....+.|..++. +++.++.+.-. .+..-.|++ .++.++... .++.+.++++....
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            4556799999998   47777888889988886 57887776543 355778888 555555544 58899999885432


Q ss_pred             ccc-ccceee----eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc--cccceeeee--e---ccccceeEEEEE
Q 018591          200 SHC-HSLKGI----LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV--EIVRWKLAC--E---TKAHEMAVLCVC  267 (353)
Q Consensus       200 ~~~-~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~--~---~~~~~~~v~~~~  267 (353)
                      ... ......    +......-+..++|+|.++.|+++-...-..+|.+..  .........  .   .........+++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence            110 000111    1111222248999999888888887777777777764  111100000  0   111222344555


Q ss_pred             Ec---CcEEEEecCCCeEEEEecCCCcceEEeccccC-C------CcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          268 LV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITG-H------EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       268 ~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h------~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      ++   +.+++.+..+..|..+| ..++.. ....+.. .      -...-.|+|.++    |.+.+++ +-+...++
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~-~~~~L~~g~~gl~~~~~QpEGIa~d~~----G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELD-RQGRVV-SSLSLDRGFHGLSKDIPQPEGIAFDPD----GNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE--TT--EE-EEEE-STTGGG-SS---SEEEEEE-TT------EEEEE-TTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEC-CCCCEE-EEEEeCCcccCcccccCCccEEEECCC----CCEEEEc-CCceEEEe
Confidence            54   67888889999999999 444422 2222322 1      124678999998    7665555 45444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.69  E-value=0.02  Score=48.46  Aligned_cols=176  Identities=15%  Similarity=0.097  Sum_probs=93.9

Q ss_pred             cEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee----eEEEEc
Q 018591          149 TLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL----NSVVVS  223 (353)
Q Consensus       149 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~  223 (353)
                      .|.+|+. .|+.+..+.-..+.+.++.| .+..|+....||.+++||+....  ........  ....++    ....+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i--~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEI--EEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhc--cccCcccccccccccC
Confidence            5999985 57777776555589999999 55588888999999999986332  11111111  111111    112333


Q ss_pred             CCCCeEEeecCCCcEEEeeccccccceeeeeeccc-------cce--eEEEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-------HEM--AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~--~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                      .+|  ++.-..++.+.+.+-...............       ...  .+..+..+....+....++.+.+.+-...+   
T Consensus       137 ~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---  211 (410)
T PF04841_consen  137 KNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---  211 (410)
T ss_pred             CCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc---
Confidence            345  333333444444432222101011101111       000  111122233344444455556544433211   


Q ss_pred             EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      .   +. ..+++..++.||+    ++++|.-..+|.+.+.+..-.+..
T Consensus       212 ~---i~-~~~~i~~iavSpn----g~~iAl~t~~g~l~v~ssDf~~~~  251 (410)
T PF04841_consen  212 Q---ID-SDGPIIKIAVSPN----GKFIALFTDSGNLWVVSSDFSEKL  251 (410)
T ss_pred             c---cc-CCCCeEEEEECCC----CCEEEEEECCCCEEEEECccccee
Confidence            1   11 2468999999999    999999999999988876544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.67  E-value=0.0018  Score=58.14  Aligned_cols=138  Identities=15%  Similarity=0.192  Sum_probs=94.2

Q ss_pred             cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-----CCCeEEeecCCCcEEEeeccccccceeeee-e--c
Q 018591          185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-----DGKWVYGGGSDGFVMGWEGNVEIVRWKLAC-E--T  256 (353)
Q Consensus       185 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~--~  256 (353)
                      .....|+-.|+..++     +...+..+...+|..++-..     +....+.|-.+..+..||.+....  ++.. .  .
T Consensus       501 ~~~~~ly~mDLe~GK-----VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~~~k~  573 (794)
T PF08553_consen  501 NNPNKLYKMDLERGK-----VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDSQSKQ  573 (794)
T ss_pred             CCCCceEEEecCCCc-----EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeeccccc
Confidence            456789999999998     88888888765434443221     123456777788899999987531  1111 1  1


Q ss_pred             cccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          257 KAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       257 ~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      ........|++-. ..+||+|+.+|.||+||-- +.+  .-..+.+-..+|..|..+.|    |++++..+.. .+.+++
T Consensus       574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~--AKT~lp~lG~pI~~iDvt~D----GkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKR--AKTALPGLGDPIIGIDVTAD----GKWILATCKT-YLLLID  645 (794)
T ss_pred             cccCCCceEEEecCCceEEEEeCCCcEEeeccc-chh--hhhcCCCCCCCeeEEEecCC----CcEEEEeecc-eEEEEE
Confidence            1223345666665 6699999999999999943 332  33345677889999999999    9988877644 677777


Q ss_pred             cC
Q 018591          336 VS  337 (353)
Q Consensus       336 ~~  337 (353)
                      ..
T Consensus       646 t~  647 (794)
T PF08553_consen  646 TL  647 (794)
T ss_pred             Ee
Confidence            53

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA03098 kelch-like protein; Provisional

Probab=97.63  E-value=0.02  Score=50.68  Aligned_cols=191  Identities=10%  Similarity=0.053  Sum_probs=95.7

Q ss_pred             EEEeCCeEEEecCCC------cEEEEEcCCceeeee--ccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCc
Q 018591          134 LTVYNGLIYSGSWDK------TLKVWRVADLKCLES--IKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKS  200 (353)
Q Consensus       134 ~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~  200 (353)
                      +......++.|+.++      .+..||..+.+-...  +.........+...+..++.|+.+     ..+..||..+.+-
T Consensus       291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            333345666666542      577888776554221  111112222333355566677765     3467788776652


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCCCeEEeecCC------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                      ..   ...+......  .+++ .-+++..+.|+.+      ..+..||..++.  |..............+...++.+++
T Consensus       371 ~~---~~~lp~~r~~--~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv  442 (534)
T PHA03098        371 RE---EPPLIFPRYN--PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYV  442 (534)
T ss_pred             ee---CCCcCcCCcc--ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEE
Confidence            11   1111111111  1222 2346666666632      357888887652  3333332222222334455677777


Q ss_pred             EecCC--------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCC
Q 018591          275 SGSAD--------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQ  339 (353)
Q Consensus       275 ~~~~d--------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  339 (353)
                      .|+.+        ..+.+||..+.+ +..+..+.........+.+  +    +++++.||.+     ..+.+||..+.
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--N----NKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--C----CEEEEEcCCcCCcccceeEEEeCCCC
Confidence            77653        238889987643 2233322211111122222  4    7788888765     46888887765

>PHA03098 kelch-like protein; Provisional

Probab=97.57  E-value=0.037  Score=49.09  Aligned_cols=147  Identities=12%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             EeCCeEEEecCC-----CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcCC------CcEEEEeCCCCCccc
Q 018591          136 VYNGLIYSGSWD-----KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASAD------GKIKAWGKELGKSHC  202 (353)
Q Consensus       136 ~~~~~l~~~~~d-----g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~d------g~i~iwd~~~~~~~~  202 (353)
                      .....++.|+.+     ..+..||..+.+-.  ..+.............+..++.|+.+      ..+..||..+.+-..
T Consensus       341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            334666667654     34777887654322  12211111112222244455666632      357888987664211


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--------cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                         ..........  .++ ...++...+.|+.++        .+.+||..++.  |...............+..++.+++
T Consensus       421 ---~~~~p~~r~~--~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv  492 (534)
T PHA03098        421 ---GSPLPISHYG--GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIYV  492 (534)
T ss_pred             ---cCCCCccccC--ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEEE
Confidence               1111111111  122 223456666666432        37888887763  3333222222222233445777777


Q ss_pred             EecCC-----CeEEEEecCCC
Q 018591          275 SGSAD-----KSIGIWKREAF  290 (353)
Q Consensus       275 ~~~~d-----g~i~iw~~~~~  290 (353)
                      .|+.+     +.+.+||..+.
T Consensus       493 ~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        493 VGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EcCCcCCcccceeEEEeCCCC
Confidence            77754     47888988764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.54  E-value=0.013  Score=49.74  Aligned_cols=143  Identities=17%  Similarity=0.050  Sum_probs=76.4

Q ss_pred             cCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591          167 HDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       167 ~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                      .......+.++| +.+++.+.||.-.++.....+       ....   +.. ...+|.+.++ +++-...+.|.++.--.
T Consensus        31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r-------~k~~---G~g-~~~vw~~~n~-yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWR-------NKAF---GSG-LSFVWSSRNR-YAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTE-------EEEE---EE--SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred             CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCc-------cccc---Cce-eEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence            345567888844 456666788888888843332       1111   112 6788888554 66666688899963323


Q ss_pred             cccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          246 EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      +...    ..+.. ...+..+-. |.+|...+.+ .|.+||..+++   .+..+..  .+|..+.|+++    +++++-.
T Consensus        99 ~~~~----k~i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~---~i~~i~v--~~vk~V~Ws~~----g~~val~  162 (443)
T PF04053_consen   99 NEVV----KSIKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETGK---LIRRIDV--SAVKYVIWSDD----GELVALV  162 (443)
T ss_dssp             E-TT----------SS-EEEEE--SSSEEEEETT-EEEEE-TTT-----EEEEESS---E-EEEEE-TT----SSEEEEE
T ss_pred             cccc----eEEcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHcc---eeeEEec--CCCcEEEEECC----CCEEEEE
Confidence            2110    11111 112333333 7877777665 79999999987   4544442  24899999999    9999999


Q ss_pred             cCCCeEEEEEcCC
Q 018591          326 SLDKSLRVWWVSK  338 (353)
Q Consensus       326 ~~dg~i~iw~~~~  338 (353)
                      +.+ .+.|++...
T Consensus       163 t~~-~i~il~~~~  174 (443)
T PF04053_consen  163 TKD-SIYILKYNL  174 (443)
T ss_dssp             -S--SEEEEEE-H
T ss_pred             eCC-eEEEEEecc
Confidence            866 577776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00052  Score=58.20  Aligned_cols=71  Identities=20%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             EEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE-EEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          266 VCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK-CLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       266 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +.|.-.++|.+..+|.|.+..++ .+   ++.++.-|...++ +++|.||    |+.||.|-.||+|++-|++++..+.+
T Consensus        28 wnP~~dLiA~~t~~gelli~R~n-~q---Rlwtip~p~~~v~~sL~W~~D----GkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   28 WNPKMDLIATRTEKGELLIHRLN-WQ---RLWTIPIPGENVTASLCWRPD----GKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             EcCccchhheeccCCcEEEEEec-cc---eeEeccCCCCccceeeeecCC----CCEEEEEecCCeEEEEEccCCCceec
Confidence            33346689999999999999987 44   5666766666777 9999999    99999999999999999999988876

>PHA02790 Kelch-like protein; Provisional

Probab=97.45  E-value=0.049  Score=47.43  Aligned_cols=183  Identities=10%  Similarity=0.056  Sum_probs=92.9

Q ss_pred             CeEEEecCCC-----cEEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC--CcEEEEeCCCCCcccccceeee
Q 018591          139 GLIYSGSWDK-----TLKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD--GKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       139 ~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~  209 (353)
                      ..+++|+.++     .+..||..+.+-..  .+.........+...+...+.|+.+  ..+..||..+++-.   ....+
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~---~~~~l  349 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV---NMPSL  349 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEE---ECCCC
Confidence            4566776543     46778877654322  2222122222223344455666653  35777887655311   11111


Q ss_pred             eccCCceeeEEEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEe
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWK  286 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~  286 (353)
                      ......  .++ ..-+++..+.|+.++   .+..||.+++  .|..................++.+.+.|+   .+.+||
T Consensus       350 ~~~r~~--~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~yd  421 (480)
T PHA02790        350 LKPRCN--PAV-ASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYC  421 (480)
T ss_pred             CCCCcc--cEE-EEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ceEEec
Confidence            111111  112 223566777777553   4678888765  34433333322233334456677777774   477899


Q ss_pred             cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCC
Q 018591          287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQ  339 (353)
Q Consensus       287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  339 (353)
                      .++. .+..+..+.........+.+  +    +++.+.||.+     ..+..||..+.
T Consensus       422 p~~~-~W~~~~~m~~~r~~~~~~v~--~----~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        422 ESSN-TWTLIDDPIYPRDNPELIIV--D----NKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCC-cEeEcCCCCCCccccEEEEE--C----CEEEEECCcCCCcccceEEEEECCCC
Confidence            8764 34344443322222222222  3    7888888865     35777776654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.45  E-value=0.00058  Score=37.18  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ...|..++|+|.    .++||.++.||.|.++.+ +.+.
T Consensus        11 ~~~v~~~~w~P~----mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPT----MDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCC----CCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999    999999999999999999 4443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.44  E-value=0.039  Score=43.76  Aligned_cols=234  Identities=14%  Similarity=0.124  Sum_probs=118.0

Q ss_pred             CcEEEEEeCCC-cEEEEeCCCceeeEEeccCceeeE--EEEEe--CCEEEEe-----cCCCcEEEEEcccCccceeEEee
Q 018591           26 GEFILSASQGK-DIIVWQQPDLRMFTKFGHGDGSVK--AVVTV--GNKVFTA-----HQDSRIRVWKVSRSSENVFRLVD   95 (353)
Q Consensus        26 ~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~--~~~l~s~-----~~dg~i~~w~~~~~~~~~~~~~~   95 (353)
                      +..++.+-.-| ...+||..+++....+....+.-.  --.|+  |++|++.     ...|.|-|||...+    +..+.
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~----~~ri~   92 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG----YRRIG   92 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC----cEEEe
Confidence            44555555544 466888888888877754333221  12344  7888875     34588999999832    22333


Q ss_pred             ccccccc--eeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeee--c--c
Q 018591           96 TLPTTKD--YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLES--I--K  165 (353)
Q Consensus        96 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~--~--~  165 (353)
                      .++....  .-....+....+....          +   .|..+|    ..|=..+.+-.+...|..+++.+.+  +  .
T Consensus        93 E~~s~GIGPHel~l~pDG~tLvVAN----------G---GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   93 EFPSHGIGPHELLLMPDGETLVVAN----------G---GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EecCCCcChhhEEEcCCCCEEEEEc----------C---CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence            3332211  0001111110111000          0   011111    1233334556677778888887766  4  3


Q ss_pred             ccCcceEEEEE-eCCeEEEEcC-CC-------cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CC
Q 018591          166 AHDDAVNGLVA-SKGIVYSASA-DG-------KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SD  235 (353)
Q Consensus       166 ~~~~~v~~i~~-~~~~l~~~~~-dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  235 (353)
                      .|...|..+++ .++.++.+.. .|       -+-+++....-............-...+ -+|++++++.++++.+ ..
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~-gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI-GSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce-EEEEEeCCCCEEEEECCCC
Confidence            37778999998 4444444432 11       1233332221100000001112222344 8999999998776555 56


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEE
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGI  284 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i  284 (353)
                      +.+.+||..++    .+.....  -..++.+++. +.++++.+ .|.+..
T Consensus       239 g~~~~~d~~tg----~~~~~~~--l~D~cGva~~~~~f~~ssG-~G~~~~  281 (305)
T PF07433_consen  239 GRVAVWDAATG----RLLGSVP--LPDACGVAPTDDGFLVSSG-QGQLIR  281 (305)
T ss_pred             CEEEEEECCCC----CEeeccc--cCceeeeeecCCceEEeCC-CccEEE
Confidence            78999999988    3333322  2335556664 33455544 454433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.048  Score=43.94  Aligned_cols=103  Identities=11%  Similarity=0.042  Sum_probs=59.7

Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccc--cccce-eeeeecccc--ceeEEEEEEcCcEEEEecCC
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNV--EIVRW-KLACETKAH--EMAVLCVCLVGEFLCSGSAD  279 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~-~~~~~~~~~--~~~v~~~~~~~~~l~~~~~d  279 (353)
                      .+....+-..+ +.++||||++.++.... .+.|.-|++..  ..... .........  ..--.++.-+|.+-+++..+
T Consensus       155 ~~l~~~~~~~~-NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         155 VRLLDDDLTIP-NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             EEeecCcEEec-CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            34444434444 89999999988777655 47888887763  11000 111111111  12234555567776555454


Q ss_pred             C-eEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          280 K-SIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       280 g-~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      | .|..|+.+ ++   .+..+.-....+++++|--
T Consensus       234 g~~v~~~~pd-G~---l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         234 GGRVVRFNPD-GK---LLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             CceEEEECCC-Cc---EEEEEECCCCCCccceEeC
Confidence            4 89999988 66   3444444446788888874

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0053  Score=55.79  Aligned_cols=71  Identities=17%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             CceEEEEECCcEEEEEeCCCcEEEEeCCCc-eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCc
Q 018591           17 GSVSSLALCGEFILSASQGKDIIVWQQPDL-RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      ..+.+.+.-+..++.|++.|.|-..|.... .....-..-.++|++++|+  |..++.|-.+|.|.+||...+.
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k  163 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK  163 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence            445555555778899999999999887543 1112223347899999998  8889999999999999998865

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0015  Score=55.51  Aligned_cols=92  Identities=15%  Similarity=0.090  Sum_probs=70.9

Q ss_pred             cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceE-EEEE-eC-CeEEEEcCCCcEEEEeCCCCCcc
Q 018591          127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN-GLVA-SK-GIVYSASADGKIKAWGKELGKSH  201 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~i~~-~~-~~l~~~~~dg~i~iwd~~~~~~~  201 (353)
                      -...|.-+.|+|  +++|.+..+|.|.+..++ .+.+.++..|...++ +++| ++ ..++.|-.||+|++.|...+.  
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~--   95 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG--   95 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC--
Confidence            345678899999  999999999999999987 888899987777777 9999 33 388999999999999999887  


Q ss_pred             cccceeeeeccCCceeeEEEEcC
Q 018591          202 CHSLKGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~  224 (353)
                         ............|.++.|+|
T Consensus        96 ---~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 ---RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ---ceeccccccccchheeeccc
Confidence               33332222223346677763

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.00051  Score=50.79  Aligned_cols=142  Identities=18%  Similarity=0.158  Sum_probs=78.9

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeee-ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLES-IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL  217 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (353)
                      ..+..-+.||.|.-++++..+.... -..+... ..+.--...++.|+.+|.|.+|+......    ...........+.
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~  105 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESID  105 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccch----HHHhhhcccccce
Confidence            3455667788888888764332111 1112211 22222455899999999999998873321    1222222222222


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeE--EEEEEcCcEEEEe--cCCCeEEEEecCC
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAV--LCVCLVGEFLCSG--SADKSIGIWKREA  289 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v--~~~~~~~~~l~~~--~~dg~i~iw~~~~  289 (353)
                      ..+.--.++.+..+++.+|.|+.|++...    +.......|. .+.  ..+.-++++++..  +.|..++.|++..
T Consensus       106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~----k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  106 LGIPNGRDSSLGCVGAQDGRIRACNIKPN----KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eccccccccceeEEeccCCceeeeccccC----ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            33444456678999999999999999876    3333333333 111  1122235555555  5666666666654

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.34  E-value=0.082  Score=46.37  Aligned_cols=71  Identities=10%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             EEEEEEcCcEEEEec-CCCeEEEEecCCCcce---------EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591          263 VLCVCLVGEFLCSGS-ADKSIGIWKREAFGKL---------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       263 v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~  332 (353)
                      -..++|+|+++++++ .+++|.+.|+.+.+..         ..+.+..- .......+|+++    |....|-..|..|.
T Consensus       325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~----G~aytslf~dsqv~  399 (635)
T PRK02888        325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGR----GNAYTTLFLDSQIV  399 (635)
T ss_pred             ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCC----CCEEEeEeecceeE
Confidence            366778888776655 5999999999875521         01112211 123456788888    88999999999999


Q ss_pred             EEEcCC
Q 018591          333 VWWVSK  338 (353)
Q Consensus       333 iw~~~~  338 (353)
                      .|++.+
T Consensus       400 kwn~~~  405 (635)
T PRK02888        400 KWNIEA  405 (635)
T ss_pred             EEehHH
Confidence            999886

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.0078  Score=50.46  Aligned_cols=142  Identities=11%  Similarity=0.192  Sum_probs=93.2

Q ss_pred             EEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---------CCEEEEecCCCcEEEEEcccCccceeEEeeccc
Q 018591           28 FILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLP   98 (353)
Q Consensus        28 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~   98 (353)
                      +|.++.....++--|++.|+.+.+...+.. |.-+.+.         ...-+.|-.|..|.-||.+-...........-.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            455666667888889999999999988766 4333332         223345556778888998744321111110000


Q ss_pred             cccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-
Q 018591           99 TTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-  176 (353)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-  176 (353)
                                                ........|++... +++++|+.+|.|++||--.......+++-..+|..+.. 
T Consensus       427 --------------------------y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt  480 (644)
T KOG2395|consen  427 --------------------------YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT  480 (644)
T ss_pred             --------------------------cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence                                      02234566777666 99999999999999996323334456777899999998 


Q ss_pred             eCCeEEEEcCCCcEEEEeCC
Q 018591          177 SKGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       177 ~~~~l~~~~~dg~i~iwd~~  196 (353)
                      .++..+.|..+..+.+.++.
T Consensus       481 adGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  481 ADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccCcEEEEecccEEEEEEEe
Confidence            55655556667788887764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.0076  Score=50.50  Aligned_cols=141  Identities=18%  Similarity=0.181  Sum_probs=94.7

Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-------eEEeecCCCcEEEeeccccccc---
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-------WVYGGGSDGFVMGWEGNVEIVR---  249 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~---  249 (353)
                      ++..+.....++-.|++.++     +...+..+..  |+-+.+.|+.+       .-+.|-.+..|.-||.+-....   
T Consensus       348 il~~~~~~~~l~klDIE~GK-----IVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGK-----IVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             EeeCCCCcCcceeeecccce-----eeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            45566666778888999998     7778877777  46777777643       2345667888999998854221   


Q ss_pred             eeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          250 WKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                      +.....+.. .....|++-. ..++++|+.+|.||+||. .+..  .-..+.+-..+|..+..+.+    |++++..+..
T Consensus       421 ~~q~kqy~~-k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~--AKTAlPgLG~~I~hVdvtad----GKwil~Tc~t  492 (644)
T KOG2395|consen  421 VVQSKQYST-KNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRR--AKTALPGLGDAIKHVDVTAD----GKWILATCKT  492 (644)
T ss_pred             eeecccccc-ccccceeeecCCceEEEeecCCcEEeehh-hhhh--hhhcccccCCceeeEEeecc----CcEEEEeccc
Confidence            111111111 2233444443 669999999999999997 3332  23346778889999999999    8888777644


Q ss_pred             CeEEEEEc
Q 018591          329 KSLRVWWV  336 (353)
Q Consensus       329 g~i~iw~~  336 (353)
                       .+.+-++
T Consensus       493 -yLlLi~t  499 (644)
T KOG2395|consen  493 -YLLLIDT  499 (644)
T ss_pred             -EEEEEEE
Confidence             5555554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.23  E-value=0.0012  Score=58.24  Aligned_cols=115  Identities=14%  Similarity=0.107  Sum_probs=79.6

Q ss_pred             eEEEEcCCCCeEEeec----CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce
Q 018591          218 NSVVVSDDGKWVYGGG----SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                      +-..|+|...++++++    ..|.|.||-- ++.+.....  .+-| ....|+.|..-.|+.|-.-|.+.+|...+.+  
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt--~P~h-atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--   92 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVT--YPVH-ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--   92 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCcccc--ccee-hhhhccChHHHHHhhccccceeEEEecCCce--
Confidence            5567888888887765    4578888843 332111111  1111 1124444445678888889999999988765  


Q ss_pred             EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                       .-.....|..+|..+.|||+    |..|+++..-|.|.+|.......++
T Consensus        93 -~htv~~th~a~i~~l~wS~~----G~~l~t~d~~g~v~lwr~d~~g~~q  137 (1416)
T KOG3617|consen   93 -THTVVETHPAPIQGLDWSHD----GTVLMTLDNPGSVHLWRYDVIGEIQ  137 (1416)
T ss_pred             -eeeeccCCCCCceeEEecCC----CCeEEEcCCCceeEEEEeeeccccc
Confidence             33334579999999999999    9999999999999999987544443

>PHA02790 Kelch-like protein; Provisional

Probab=97.16  E-value=0.11  Score=45.27  Aligned_cols=144  Identities=10%  Similarity=0.027  Sum_probs=73.6

Q ss_pred             EeCCeEEEecCC--CcEEEEEcCCce--eeeeccccCcceEEEEEeCCeEEEEcCCC---cEEEEeCCCCCcccccceee
Q 018591          136 VYNGLIYSGSWD--KTLKVWRVADLK--CLESIKAHDDAVNGLVASKGIVYSASADG---KIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       136 ~~~~~l~~~~~d--g~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~  208 (353)
                      ......+.|+.+  ..+..||..+.+  .+..+.............+...+.|+.++   .+..||.++.+-.....   
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~---  393 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS---  393 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC---
Confidence            344566666653  357888876543  22223211222222233555666666543   46778887664211111   


Q ss_pred             eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEE
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIG  283 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~  283 (353)
                      +.....   ...+..-+++..+.|+   .+.+||.+++  .|.....+............++++.+.||.+     ..+.
T Consensus       394 m~~~r~---~~~~~~~~~~IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve  465 (480)
T PHA02790        394 TYYPHY---KSCALVFGRRLFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIE  465 (480)
T ss_pred             CCCccc---cceEEEECCEEEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEE
Confidence            111111   1111223455666663   5778998765  4444444443344444556678888888864     3466


Q ss_pred             EEecCCC
Q 018591          284 IWKREAF  290 (353)
Q Consensus       284 iw~~~~~  290 (353)
                      .||..+.
T Consensus       466 ~Yd~~~~  472 (480)
T PHA02790        466 VYNNRTY  472 (480)
T ss_pred             EEECCCC
Confidence            6776653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.0045  Score=56.23  Aligned_cols=108  Identities=16%  Similarity=0.129  Sum_probs=72.6

Q ss_pred             CcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591          168 DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       168 ~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  247 (353)
                      ...+.+.+.....++.|+..|.+-..|....-     .......+...+|++++|+.+|+.++.|-.+|.|.+||...++
T Consensus        89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL-----~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k  163 (1206)
T KOG2079|consen   89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNL-----GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK  163 (1206)
T ss_pred             CcceeeeeeeeeeEEEEcCchhhhhhhhhccc-----chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence            34455555566789999999999999887642     1123334445567999999999999999999999999999873


Q ss_pred             cceeeeeeccccceeE----EEEEEc-CcEEEEecCCCeEEEEe
Q 018591          248 VRWKLACETKAHEMAV----LCVCLV-GEFLCSGSADKSIGIWK  286 (353)
Q Consensus       248 ~~~~~~~~~~~~~~~v----~~~~~~-~~~l~~~~~dg~i~iw~  286 (353)
                          ....+..+..+.    .....+ +..+.++...|.  +|.
T Consensus       164 ----~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  164 ----ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             ----ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence                333333333222    222223 445777777775  454

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.08  E-value=0.091  Score=40.87  Aligned_cols=200  Identities=11%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC-ceeeEEEEEe-CCEEEEe-cCCCcEEEEEc
Q 018591           10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV-GNKVFTA-HQDSRIRVWKV   83 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~s~-~~dg~i~~w~~   83 (353)
                      +.+.+-.+.++.|+|+   +.++++....+.|...+. +|+.++.+.-. .+..-.|++. ++.++.. -.++.+.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            3566666779999996   557777788889988886 57888777543 3456777776 4444444 45888999988


Q ss_pred             ccCccce-eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC---
Q 018591           84 SRSSENV-FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD---  157 (353)
Q Consensus        84 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~---  157 (353)
                      ....... ......+..                      .....+...+-.++|++  +.|+++-...-..+|.+..   
T Consensus        94 ~~~~~~~~~~~~~~~~l----------------------~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~  151 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISL----------------------GFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG  151 (248)
T ss_dssp             ----TT--EEEEEEEE-------------------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred             eccccccchhhceEEec----------------------ccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence            5433110 111111100                      00013566788999998  7777777776667776643   


Q ss_pred             ceeee--e------ccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---------Ccee
Q 018591          158 LKCLE--S------IKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---------DVSL  217 (353)
Q Consensus       158 ~~~~~--~------~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~v  217 (353)
                      ...+.  .      .......+.++++++.   +++....+..|..+|. +++     +...+.-..         ..+ 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~-----~~~~~~L~~g~~gl~~~~~Qp-  224 (248)
T PF06977_consen  152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGR-----VVSSLSLDRGFHGLSKDIPQP-  224 (248)
T ss_dssp             SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T-------EEEEEE-STTGGG-SS---SE-
T ss_pred             ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCC-----EEEEEEeCCcccCcccccCCc-
Confidence            11111  1      1123345678888433   7777778888888984 444     222222111         233 


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEE
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMG  240 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i  240 (353)
                      ..++|.++|++.+++ .-+..++
T Consensus       225 EGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  225 EGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             EEEEE-TT--EEEEE-TTTEEEE
T ss_pred             cEEEECCCCCEEEEc-CCceEEE
Confidence            789999999765554 4443333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.05  E-value=0.12  Score=41.70  Aligned_cols=153  Identities=12%  Similarity=0.044  Sum_probs=80.4

Q ss_pred             CeEEEecCCCcEEEEEcC-Cceeeee----ccccCcceE-EEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591          139 GLIYSGSWDKTLKVWRVA-DLKCLES----IKAHDDAVN-GLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE  210 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~-~~~~~~~----~~~~~~~v~-~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  210 (353)
                      +.+.+-+.||.+.-..+. .|+...+    |.....++. .-++  .++.++-.+.+|.|+--|+.............+.
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            677888889999988887 4544322    111122222 2233  3346666888999999998876522111111111


Q ss_pred             cc-------CCceeeEEEEcCCCCeEEeecC--------CC--cEEEeeccccccceeeeeeccc-cceeEEEEEEc-Cc
Q 018591          211 GH-------KDVSLNSVVVSDDGKWVYGGGS--------DG--FVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLV-GE  271 (353)
Q Consensus       211 ~~-------~~~~v~~~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~  271 (353)
                      ..       .+. ..-+++++..+.|++.-.        |+  .|.++|+.+.+    .+..+.. +......++-+ ..
T Consensus       228 ~~e~~~~WrPGG-~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k----rv~Ri~l~~~~~Si~Vsqd~~P  302 (342)
T PF06433_consen  228 DAEKADGWRPGG-WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK----RVARIPLEHPIDSIAVSQDDKP  302 (342)
T ss_dssp             HHHHHTTEEE-S-SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE----EEEEEEEEEEESEEEEESSSS-
T ss_pred             ccccccCcCCcc-eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe----EEEEEeCCCccceEEEccCCCc
Confidence            00       011 245788876655554321        22  57777888773    3333332 22223344444 33


Q ss_pred             EEE-EecCCCeEEEEecCCCcceEEe
Q 018591          272 FLC-SGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       272 ~l~-~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      +|+ ....++.+.+||..+++....+
T Consensus       303 ~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  303 LLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            554 4567899999999999844443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.77  E-value=0.43  Score=43.85  Aligned_cols=305  Identities=13%  Similarity=0.131  Sum_probs=156.7

Q ss_pred             cCceEEEEEC-----C---cEEEEEeCCCcEEEEe-CCCceeeEEe--cc--CceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591           16 VGSVSSLALC-----G---EFILSASQGKDIIVWQ-QPDLRMFTKF--GH--GDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus        16 ~~~v~~~~~~-----~---~~l~s~~~dg~v~vwd-~~~~~~~~~~--~~--~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      ...|.|+.++     .   ++++.|..+..+.+-- .++...+...  ..  -+..|....+.  ..+|+++..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            3578888885     2   3888898877665543 3444433322  11  12234334443  678999999999988


Q ss_pred             EEcccCccceeEE-eeccccccceeeeecccce--eEeecccceeeeeecCCc----------eEEEE-EeC----CeEE
Q 018591           81 WKVSRSSENVFRL-VDTLPTTKDYLGKFMKQSN--YVQTRRHHKRLWIEHADS----------ISCLT-VYN----GLIY  142 (353)
Q Consensus        81 w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------i~~~~-~~~----~~l~  142 (353)
                      +.++......... ...+......+..+.....  .......+.-++ .+.+.          +..++ |+.    +.++
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY-~~n~kLv~spls~kev~~~c~f~s~a~~d~l~  688 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIY-SSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLA  688 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEE-ecCCcEEEeccchHHhhhhcccccccCCceEE
Confidence            7766543211111 0112222222222222211  222222333222 22221          11111 111    4455


Q ss_pred             EecCCCcEEEEEcCCcee--eeeccccCcceEEEEEeCC--eEEEEcC-----------C---CcEEEEeCCCCCccccc
Q 018591          143 SGSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVASKG--IVYSASA-----------D---GKIKAWGKELGKSHCHS  204 (353)
Q Consensus       143 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~--~l~~~~~-----------d---g~i~iwd~~~~~~~~~~  204 (353)
                      .+.. +.+++--++.-+.  ++++.- ......+++.+.  .+.+.+.           .   ..++++|-++-+     
T Consensus       689 ~~~~-~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~-----  761 (1096)
T KOG1897|consen  689 SANG-GALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE-----  761 (1096)
T ss_pred             EecC-CceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee-----
Confidence            5543 5566666544221  223322 233445555332  2222211           1   125566655544     


Q ss_pred             ceeeeeccCC---ceeeEEEEcCC-CCeEEeecC----------CCcEEEeeccccccceeeeeeccccceeEEEE-EEc
Q 018591          205 LKGILEGHKD---VSLNSVVVSDD-GKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCV-CLV  269 (353)
Q Consensus       205 ~~~~~~~~~~---~~v~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~  269 (353)
                      .....+....   ..+.++.|..| +.++++|..          .|.|.+|..... ...+...+..- .+.+.++ .++
T Consensus       762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v-~Gav~aL~~fn  839 (1096)
T KOG1897|consen  762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVV-KGAVYALVEFN  839 (1096)
T ss_pred             EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeee-ccceeehhhhC
Confidence            2222111111   11244457766 677777752          477888877762 12223322222 3344444 456


Q ss_pred             CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       270 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      |+++|.-  +..|++|+..+.+   .++.-..|..++..+...-.    ++.++.|..-+++.+-.....
T Consensus       840 gkllA~I--n~~vrLye~t~~~---eLr~e~~~~~~~~aL~l~v~----gdeI~VgDlm~Sitll~y~~~  900 (1096)
T KOG1897|consen  840 GKLLAGI--NQSVRLYEWTTER---ELRIECNISNPIIALDLQVK----GDEIAVGDLMRSITLLQYKGD  900 (1096)
T ss_pred             CeEEEec--CcEEEEEEccccc---eehhhhcccCCeEEEEEEec----CcEEEEeeccceEEEEEEecc
Confidence            7777654  5679999998875   56666678888999999888    899999998888877665543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.15  Score=45.17  Aligned_cols=50  Identities=8%  Similarity=0.153  Sum_probs=38.5

Q ss_pred             cEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCc
Q 018591           37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      .|+|++. +|+++..+.-..+.+..+.|+ ...|++...+|++.+|++-...
T Consensus        65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF  115 (829)
T ss_pred             eEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence            5778885 566665554444588899999 7889999999999999986543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.74  E-value=0.0055  Score=33.38  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee
Q 018591          127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      ....|.++.|+|  +++|.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            345799999999  99999999999999998 5544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.67  E-value=0.29  Score=40.42  Aligned_cols=316  Identities=13%  Similarity=0.136  Sum_probs=120.2

Q ss_pred             CCCCceeeeeeCccCceEEEEE-------CCc-EEEEEeCCC--cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLAL-------CGE-FILSASQGK--DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF   70 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~-------~~~-~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~   70 (353)
                      ..||-.+..|..+...-..+-|       +|+ +|+++..||  .+.+-|+.+++..+.-.+..........+  ++.++
T Consensus        17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~   96 (386)
T PF14583_consen   17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALY   96 (386)
T ss_dssp             TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEE
T ss_pred             CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEE
Confidence            4566677777765554444544       254 555555555  56666889988877665432222222222  55554


Q ss_pred             EecCCCcEEEEEcccCccceeEEeeccccccceeeeec-ccceeEeecccceeeeeecCCceEEEE-EeC-CeEEEecCC
Q 018591           71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM-KQSNYVQTRRHHKRLWIEHADSISCLT-VYN-GLIYSGSWD  147 (353)
Q Consensus        71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-~~l~~~~~d  147 (353)
                      -......|+--|+++.++.   .+..+|..-....... +........     +...+.. ...+. +.. ..+.-+--.
T Consensus        97 Yv~~~~~l~~vdL~T~e~~---~vy~~p~~~~g~gt~v~n~d~t~~~g-----~e~~~~d-~~~l~~~~~f~e~~~a~p~  167 (386)
T PF14583_consen   97 YVKNGRSLRRVDLDTLEER---VVYEVPDDWKGYGTWVANSDCTKLVG-----IEISRED-WKPLTKWKGFREFYEARPH  167 (386)
T ss_dssp             EEETTTEEEEEETTT--EE---EEEE--TTEEEEEEEEE-TTSSEEEE-----EEEEGGG------SHHHHHHHHHC---
T ss_pred             EEECCCeEEEEECCcCcEE---EEEECCcccccccceeeCCCccEEEE-----EEEeehh-ccCccccHHHHHHHhhCCC
Confidence            4444457777787776532   3333332211111111 000000000     0000000 00000 000 112222334


Q ss_pred             CcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcC---CC-cEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591          148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASA---DG-KIKAWGKELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      ..|.-.|+.+++....+. ....+..+.++|.   .+.-|-.   +. .-|||-+++.......+   .+......+.-=
T Consensus       168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v---~~~~~~e~~gHE  243 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV---HRRMEGESVGHE  243 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES---S---TTEEEEEE
T ss_pred             ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee---ecCCCCcccccc
Confidence            567777888877655554 3567777888443   5554432   22 13667655443211111   111223334556


Q ss_pred             EEcCCCCeEEe-----ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC----------------
Q 018591          221 VVSDDGKWVYG-----GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD----------------  279 (353)
Q Consensus       221 ~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d----------------  279 (353)
                      -|.|||..+.-     ++.+..|.-+|..+.....  .....  ...-.-.+++|++++-=+.|                
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~  319 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEND  319 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---SEEEEEE-TTSSEEEEEE------------------
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCC
Confidence            68899876653     2234456667777653221  11111  11111222346665532332                


Q ss_pred             CeEEEEecCCCcceEEecc-------ccCCCc-CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          280 KSIGIWKREAFGKLCRVGA-------ITGHEG-PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~-------~~~h~~-~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      -.|++++++.+... .+..       +.++.. .=-...|+||   +...|.++...|...||-++-+
T Consensus       320 p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPD---gk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  320 PWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPD---GKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             -EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TT---SSEEEEEE-TTSS-EEEEEE--
T ss_pred             cEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCC---CCEEEEECCCCCCccEEEEeCc
Confidence            25677888765422 1111       121111 1245789999   2345666677888888865533

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.58  E-value=0.61  Score=43.01  Aligned_cols=200  Identities=12%  Similarity=0.040  Sum_probs=112.7

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcc--------eEEEEE------------------eCCeEEEEcCCCcEEE
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA--------VNGLVA------------------SKGIVYSASADGKIKA  192 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~i~~------------------~~~~l~~~~~dg~i~i  192 (353)
                      +.++.++.++.|.-.|..+++.+.++......        ...+.+                  .++.++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            78888899999999999999988877532210        112222                  2337888999999999


Q ss_pred             EeCCCCCcccccceeeeeccC-----------CceeeEEEEcC--CCCeEEeecC----------CCcEEEeeccccccc
Q 018591          193 WGKELGKSHCHSLKGILEGHK-----------DVSLNSVVVSD--DGKWVYGGGS----------DGFVMGWEGNVEIVR  249 (353)
Q Consensus       193 wd~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~  249 (353)
                      .|.++++     ....+....           ......+.-.|  .+..+++|+.          +|.|+-+|.++++..
T Consensus       275 LDA~TGk-----~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       275 LDADTGK-----LCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EECCCCC-----EEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            9999988     222211100           00000111112  1335556542          688999999999877


Q ss_pred             eeeeeeccccc-------------e---eEEEEEEcCcEEEEec------------------CCCeEEEEecCCCcceEE
Q 018591          250 WKLACETKAHE-------------M---AVLCVCLVGEFLCSGS------------------ADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       250 ~~~~~~~~~~~-------------~---~v~~~~~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~~  295 (353)
                      ++.........             .   ...++.+...+++.+.                  ..+.|.-.|.++++....
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~  429 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV  429 (764)
T ss_pred             eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence            76543111000             0   1122222222333221                  234566667777764433


Q ss_pred             eccccCCCc-------CeEEEEeec-CCCCCC---eEEEEccCCCeEEEEEcCCCCCcccccCC
Q 018591          296 VGAITGHEG-------PVKCLQASP-NAVGGG---FLLYSGSLDKSLRVWWVSKQSSTSDSEEK  348 (353)
Q Consensus       296 ~~~~~~h~~-------~v~~~~~~~-~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  348 (353)
                      .+. ..|.-       ...=+.+.. +    |   +.++.++.+|.+.+.|.++++.+...++.
T Consensus       430 ~Q~-~~hD~WD~D~~~~p~L~d~~~~~----G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~  488 (764)
T TIGR03074       430 FQT-VHHDLWDMDVPAQPSLVDLPDAD----GTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEV  488 (764)
T ss_pred             ecc-cCCccccccccCCceEEeeecCC----CcEeeEEEEECCCCEEEEEECCCCCEEeeceee
Confidence            322 11211       011111222 3    4   48999999999999999999988765543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.42  Score=40.31  Aligned_cols=198  Identities=16%  Similarity=0.086  Sum_probs=120.6

Q ss_pred             EEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcC---CCcEEEEeCCCCCccccc
Q 018591          133 CLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASA---DGKIKAWGKELGKSHCHS  204 (353)
Q Consensus       133 ~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~---dg~i~iwd~~~~~~~~~~  204 (353)
                      .++.++   ...+....++.|.+.|..+.+.......-. ....+++  .++.+..+..   ++++.+.|..+.+     
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-----  151 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-----  151 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-----
Confidence            445555   355555567899999987776666553322 4456666  3334444433   6888888888876     


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeeccccccce-eee-eeccccceeEEEEEEcCcEEEEecCC--
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIVRW-KLA-CETKAHEMAVLCVCLVGEFLCSGSAD--  279 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~l~~~~~d--  279 (353)
                      ......... .+ ..++++|+++.++... .++.+.+.|........ ... ............+.+++.++.+....  
T Consensus       152 ~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         152 VTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             EEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            333322222 33 7899999999666554 78899999977652211 000 01122233456677787755554433  


Q ss_pred             -CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcCCCCCccc
Q 018591          280 -KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       280 -g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~  344 (353)
                       +.+...|..++....... ..+-. ....+..+|+    |..+.+.. ..+.+.+-|..+......
T Consensus       230 ~~~v~~id~~~~~v~~~~~-~~~~~-~~~~v~~~p~----g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         230 SNNVLKIDTATGNVTATDL-PVGSG-APRGVAVDPA----GKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             CceEEEEeCCCceEEEecc-ccccC-CCCceeECCC----CCEEEEEecCCCeEEEEeCCCCceeee
Confidence             589999988765322111 11112 4566889999    88877774 447888888777655543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.41  E-value=0.25  Score=42.11  Aligned_cols=133  Identities=14%  Similarity=0.029  Sum_probs=75.3

Q ss_pred             CcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591          148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (353)
                      ..+.++|+++++....+. ..+.-..-.|+++   .+++...||.  |.+.|+....     ..+ +....+.. ..=.|
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-----~~~-Lt~~~gi~-~~Ps~  289 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-----LPR-LTNGFGIN-TSPSW  289 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----cee-cccCCccc-cCccC
Confidence            469999998876554443 1222334455332   5666677776  5555776665     222 33222222 45678


Q ss_pred             cCCCCeEEeec-CCC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC-CCe--EEEEecCCCc
Q 018591          223 SDDGKWVYGGG-SDG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA-DKS--IGIWKREAFG  291 (353)
Q Consensus       223 ~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-dg~--i~iw~~~~~~  291 (353)
                      +|||+.++-.+ ..|  .|.+++.+....   ...+..........++++|++++..+. +|.  |.+.|+.++.
T Consensus       290 spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         290 SPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            99999877554 444  455556655532   222233333336667788888776654 344  6677776655

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.31  E-value=0.43  Score=38.41  Aligned_cols=156  Identities=11%  Similarity=0.070  Sum_probs=76.6

Q ss_pred             ccCcceEEEEE-eCCeEEEEcCCCcE-EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591          166 AHDDAVNGLVA-SKGIVYSASADGKI-KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG  243 (353)
Q Consensus       166 ~~~~~v~~i~~-~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  243 (353)
                      ...+.+..+.. +++.+++.+..|.+ .-||.....      -..........+.++.|.|++.+.+++ ..|.|+.=+.
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc------ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            33466777766 55555555555555 567755432      222222233446999999998776655 7888887772


Q ss_pred             cccccceee-eeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeE
Q 018591          244 NVEIVRWKL-ACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL  321 (353)
Q Consensus       244 ~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  321 (353)
                      ......+.. ..........+..+++. .+.+.+++..|.+ +...+.++..+.......-...++.+.|.++    .+-
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~----~~g  289 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP----DKG  289 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET----TEE
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCC----Cce
Confidence            222122222 11122233447777775 4445455555644 4556677766666555555667899999876    455


Q ss_pred             EEEccCCCeEEEE
Q 018591          322 LYSGSLDKSLRVW  334 (353)
Q Consensus       322 l~s~~~dg~i~iw  334 (353)
                      ++.| .+|.|.-|
T Consensus       290 f~lG-~~G~ll~~  301 (302)
T PF14870_consen  290 FVLG-QDGVLLRY  301 (302)
T ss_dssp             EEE--STTEEEEE
T ss_pred             EEEC-CCcEEEEe
Confidence            5554 68877655

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.27  E-value=0.28  Score=41.79  Aligned_cols=135  Identities=13%  Similarity=0.008  Sum_probs=74.6

Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCc--EEEeeccccccceeeeeeccccceeEE
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGF--VMGWEGNVEIVRWKLACETKAHEMAVL  264 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~  264 (353)
                      ..+.++|+.+++..   ....+.++.    ..-+|+|||+.|+. ...||.  |.++|+.....  .......+ ...-.
T Consensus       218 ~~i~~~~l~~g~~~---~i~~~~g~~----~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~Lt~~~g-i~~~P  287 (425)
T COG0823         218 PRIYYLDLNTGKRP---VILNFNGNN----GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PRLTNGFG-INTSP  287 (425)
T ss_pred             ceEEEEeccCCccc---eeeccCCcc----CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--eecccCCc-cccCc
Confidence            46999999988621   111223332    45689999987664 455664  55667666531  11122222 22256


Q ss_pred             EEEEcCcEEEE-ecCCCe--EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC-CCe--EEEEEcCC
Q 018591          265 CVCLVGEFLCS-GSADKS--IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL-DKS--LRVWWVSK  338 (353)
Q Consensus       265 ~~~~~~~~l~~-~~~dg~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~-dg~--i~iw~~~~  338 (353)
                      +++++|+.++- .+..|.  |.+++.+....  ...+..+  +.=..-.|+||    |++++..+. +|.  |.+.++.+
T Consensus       288 s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~--~~~~~p~~Spd----G~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         288 SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSG--GGNSNPVWSPD----GDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             cCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccC--CCCcCccCCCC----CCEEEEEeccCCceeeEEeccCC
Confidence            77788876654 444554  55556555442  1212222  22226679999    888877764 344  56666655


Q ss_pred             CC
Q 018591          339 QS  340 (353)
Q Consensus       339 ~~  340 (353)
                      +.
T Consensus       360 ~~  361 (425)
T COG0823         360 GG  361 (425)
T ss_pred             CC
Confidence            44

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.08  E-value=0.43  Score=36.15  Aligned_cols=98  Identities=16%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             cceEEEEEeCC---eEEEEcCCCcEEEEe--CCCCCcccccceeeeec----cCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          169 DAVNGLVASKG---IVYSASADGKIKAWG--KELGKSHCHSLKGILEG----HKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       169 ~~v~~i~~~~~---~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      .--+.++|+.+   +.++-+.+-+|.-||  ..++.......+..++.    ....+ -.+++..+|++.++.-..++|.
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P-DGm~ID~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP-DGMTIDTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCC-CcceEccCCcEEEEEecCcEEE
Confidence            33456777322   566667777887777  44444221111111111    11222 4566777899999999999999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEEcCc
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGE  271 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (353)
                      ..|..++    +...++.-....++++++-|.
T Consensus       237 ~~dp~tG----K~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  237 KVDPTTG----KILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EECCCCC----cEEEEEEcCCCceEEEEecCC
Confidence            9999999    566666666778888888754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.01  E-value=0.13  Score=42.96  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=53.1

Q ss_pred             CCCcEEEEEcCCceeeeeccccC--cceEEEEE--eCC---eEEEEcCCCcEEEEeC-CCCCcccccceeeee----cc-
Q 018591          146 WDKTLKVWRVADLKCLESIKAHD--DAVNGLVA--SKG---IVYSASADGKIKAWGK-ELGKSHCHSLKGILE----GH-  212 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~~~~~--~~v~~i~~--~~~---~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~----~~-  212 (353)
                      ...++.+||+.+.+.++++.--.  .....+.|  .+.   -++.+....+|..|-- +.++.........-.    +- 
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            35789999999999999885432  34556777  333   3444444555555533 333321111111100    00 


Q ss_pred             --C--------CceeeEEEEcCCCCeEEeec-CCCcEEEeeccccc
Q 018591          213 --K--------DVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEI  247 (353)
Q Consensus       213 --~--------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~  247 (353)
                        .        ...++.+.+|.|.++|..++ ..|.|+.||+....
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence              0        23458999999999987654 68999999998753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.3  Score=40.81  Aligned_cols=137  Identities=12%  Similarity=0.043  Sum_probs=86.7

Q ss_pred             EEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccce
Q 018591          172 NGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW  250 (353)
Q Consensus       172 ~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  250 (353)
                      +.+-| +.+..+.+...|.+.=|-.......   ....+.......|.++.|++|.+.+++--.+..|.+++....+...
T Consensus        26 ngvFfDDaNkqlfavrSggatgvvvkgpndD---VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDD---VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cceeeccCcceEEEEecCCeeEEEEeCCCCC---CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            34444 2233333444455666655443311   1122222233356999999999999999999999999986554444


Q ss_pred             eeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          251 KLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       251 ~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ....+.+.....+..+.|. ..-+|.-...| +.+|-....++  .++..+.|...|.-..|+++
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPE  164 (657)
T ss_pred             HHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccc
Confidence            4445555556678888886 44555555555 77787765443  45556678888988899987

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.90  E-value=0.51  Score=41.97  Aligned_cols=111  Identities=11%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE----cCcEEEEecCCCeEEEEecCCC---
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL----VGEFLCSGSADKSIGIWKREAF---  290 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~iw~~~~~---  290 (353)
                      .-+.-+.-++..++-+....+.|||.+.+...  ....+ .....|..+.|    +++.+++.|..+.|.+|.-...   
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE--~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLE--YEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEE--Eeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            44555555665566666678999999987422  22222 44667888877    4778888888888988854211   


Q ss_pred             ---cceEEec--cccCCC-cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          291 ---GKLCRVG--AITGHE-GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       291 ---~~~~~~~--~~~~h~-~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                         .....+.  .+..|+ .+|.+..|.++    |.+++.+  ++.+.|++-.
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~----G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKD----GTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecC----CeEEEEe--CCEEEEECCC
Confidence               1111222  223444 57999999998    7665544  3457787643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.65  E-value=1.2  Score=37.84  Aligned_cols=59  Identities=10%  Similarity=0.051  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       179 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      +++.+-+.||.+.+|+-+.-.     ....+.. .--+ ..+.+.+....|++++.+..+..|...
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~-----f~~~lp~-~llP-gPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFA-----FSRFLPD-FLLP-GPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEE-----EEEEcCC-CCCC-cCeEEeecCCEEEEecCceeEEEecHH
Confidence            488899999999999977653     3333333 3333 678899988899999999889988753

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.65  E-value=1  Score=37.10  Aligned_cols=61  Identities=5%  Similarity=-0.005  Sum_probs=31.3

Q ss_pred             CeEEEecC-----CCcEEEEEcCCcee--eeeccccCcceEEE-EEeCCeEEEEcCCCc----EEEEeCCCCC
Q 018591          139 GLIYSGSW-----DKTLKVWRVADLKC--LESIKAHDDAVNGL-VASKGIVYSASADGK----IKAWGKELGK  199 (353)
Q Consensus       139 ~~l~~~~~-----dg~v~iwd~~~~~~--~~~~~~~~~~v~~i-~~~~~~l~~~~~dg~----i~iwd~~~~~  199 (353)
                      ...+.|+.     ...+..||+.+.+-  +..+......-.++ ...+...+.|+.++.    +..||.++.+
T Consensus       125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence            45555553     24688888876432  22222111111122 335556677766543    4578887765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.49  E-value=1.3  Score=37.43  Aligned_cols=37  Identities=16%  Similarity=0.115  Sum_probs=30.8

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA  176 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~  176 (353)
                      ..+++|..+|.|++|.. +|..+..-.-|..+|..|..
T Consensus        80 ~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~  116 (415)
T PF14655_consen   80 TCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKC  116 (415)
T ss_pred             EEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEe
Confidence            47899999999999995 67766665678999999987

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.45  E-value=0.031  Score=50.26  Aligned_cols=40  Identities=13%  Similarity=0.213  Sum_probs=26.9

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG  179 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~  179 (353)
                      -++..+-.++.+++.+.++... ..+.+|...+..+++ ..+
T Consensus       196 ~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence            4666677788888877755433 555668888877776 444

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.45  E-value=1.4  Score=39.44  Aligned_cols=101  Identities=12%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             EEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEE---e-CCeEEEEcCCCcEEEEeCC-----CCCcccccce-eeee
Q 018591          142 YSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVA---S-KGIVYSASADGKIKAWGKE-----LGKSHCHSLK-GILE  210 (353)
Q Consensus       142 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~---~-~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~-~~~~  210 (353)
                      ++-+....+.|||.+.+....+-. ...+.|.++.|   + ...+++.+....|.+|--.     ...+....+. ..+.
T Consensus        45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~  124 (631)
T PF12234_consen   45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS  124 (631)
T ss_pred             EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence            334445679999998876443321 34789999999   2 2377788888888888432     2221111111 1234


Q ss_pred             ccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       211 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      .+...+|....|.++|..++.++  ..+.++|-.
T Consensus       125 ~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  125 SHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            55555678999999997665543  457887653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.45  E-value=0.066  Score=28.26  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=27.1

Q ss_pred             cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       304 ~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      +.|.++.|+|.... .++|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~-~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGG-NDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCc-ccEEEEEccCCeEEEEEccc
Confidence            46899999986211 26899998889999999985

It contains a characteristic DLL sequence motif.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.43  E-value=0.44  Score=36.06  Aligned_cols=40  Identities=15%  Similarity=-0.029  Sum_probs=35.4

Q ss_pred             eCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591          137 YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA  176 (353)
Q Consensus       137 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~  176 (353)
                      ..++.++.-..++|...|..+++.+.++.-....|++++|
T Consensus       222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            3367777778889999999999999999888999999999

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=1.4  Score=37.26  Aligned_cols=179  Identities=15%  Similarity=0.103  Sum_probs=104.8

Q ss_pred             EEEEEeC--CeEEEecC---CCcEEEEEcCCceeeeeccccCcceEEEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccc
Q 018591          132 SCLTVYN--GLIYSGSW---DKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KG--IVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       132 ~~~~~~~--~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      ..+++++  +.+.++..   ++.+.+.|..+.+.+.....-..+ ..+++. .+  .+++-..++.|.+.|........ 
T Consensus       119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-  196 (381)
T COG3391         119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-  196 (381)
T ss_pred             ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-
Confidence            4566666  45554443   789999999888887775433334 777773 33  34444578999999977665110 


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec-CC
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS-AD  279 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d  279 (353)
                      ............+ ..+.++|++..+.+....   +.+...|...+.........-.. ...-..+.|+|..+.+.. ..
T Consensus       197 ~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         197 GSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             cccccccccCCCC-ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCC
Confidence            0000011222333 779999999977665444   58888888876322221111111 234456777888777764 45


Q ss_pred             CeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      +.+.+-|..+............-...+..+++.+.
T Consensus       275 ~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         275 GTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             CeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            88999998876633333333332334555555554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.41  E-value=0.00043  Score=57.06  Aligned_cols=247  Identities=10%  Similarity=0.048  Sum_probs=134.2

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      +.-++.++.+..|..||- .++....... ++....++|+   +..++.+-..+.+.+||+.+........-.       
T Consensus        46 ~~nlavaca~tiv~~YD~-agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg-------  116 (615)
T KOG2247|consen   46 GHNLAVACANTIVIYYDK-AGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG-------  116 (615)
T ss_pred             CCceehhhhhhHHHhhhh-hcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-------
Confidence            444777888888999983 4444444433 4566677887   344556777889999999875422111100       


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG  179 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~  179 (353)
                                             .|+...  +.|++  ..++.+...|.+.+++..+.+.+.....|...++++++ ..+
T Consensus       117 -----------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  117 -----------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             -----------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence                                   122222  56666  66777788899999998887777776668999999999 677


Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeecc--CCce-eeEEE---EcCCCCeEEeecCCCcEEEeeccccccceeee
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGH--KDVS-LNSVV---VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA  253 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~-v~~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  253 (353)
                      +.+.++.|..+.+-...+..      ....+..  .+.. ...++   |..-+..+.+. ..|.+.+.-.+-........
T Consensus       172 ~vil~dcd~~L~v~~qeget------a~ltevggepdnm~~~y~k~n~w~kage~m~sV-vsgKkhl~yak~nE~D~pva  244 (615)
T KOG2247|consen  172 YVILCDCDNTLSVTTQEGET------ASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSV-VSGKKHLMYAKYNELDEPVA  244 (615)
T ss_pred             eeeecCcHHHHHHhhhccce------eeeeeccCccchhhhheeeeeccccccceeeee-eecHHHHHHHhhcCCCCccc
Confidence            88888877766554433322      1111110  0000 00111   11122222211 11111111111000000111


Q ss_pred             eeccccceeEEEEEEcCc-EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          254 CETKAHEMAVLCVCLVGE-FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       254 ~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      ..+....+.+.|..|-++ +|.-|..-|.|..-...+.+....+.....|.+.+..++.|.
T Consensus       245 l~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq  305 (615)
T KOG2247|consen  245 LQFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ  305 (615)
T ss_pred             eEeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence            133334455666666433 666677777777777776653333333335666666666554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.29  E-value=1.3  Score=36.00  Aligned_cols=206  Identities=14%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEE-EEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAV-VTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY  103 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~-~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  103 (353)
                      +.++.+--..+.|.-|+..+++.. .+.... .+.++ ..+ +..|+++..  -+.+++.+.+..  ...+......   
T Consensus        37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~-~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~--~t~~~~~~~~---  107 (307)
T COG3386          37 GALLWVDILGGRIHRLDPETGKKR-VFPSPG-GFSSGALIDAGGRLIACEH--GVRLLDPDTGGK--ITLLAEPEDG---  107 (307)
T ss_pred             CEEEEEeCCCCeEEEecCCcCceE-EEECCC-CcccceeecCCCeEEEEcc--ccEEEeccCCce--eEEeccccCC---
Confidence            346666667788888887765433 222222 22333 334 445555543  356677644431  0111111110   


Q ss_pred             eeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCC------------CcEEEEEcCCceeeeeccccCcc
Q 018591          104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWD------------KTLKVWRVADLKCLESIKAHDDA  170 (353)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~  170 (353)
                                            ......+.....+ ..+..++..            |.|+.+|. .+..++.+..+-..
T Consensus       108 ----------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~  164 (307)
T COG3386         108 ----------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTI  164 (307)
T ss_pred             ----------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEe
Confidence                                  0112233344444 344443333            33444443 45556665555556


Q ss_pred             eEEEEEeCC--e-EEEEcCCCcEEEEeCCC--CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-cEEEeecc
Q 018591          171 VNGLVASKG--I-VYSASADGKIKAWGKEL--GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-FVMGWEGN  244 (353)
Q Consensus       171 v~~i~~~~~--~-l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~  244 (353)
                      -+.|+|+++  . +++=+..+.|.-|++..  +...............+.+ -.++...+|.+.+++..+| .|.+|+..
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P-DG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP-DGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC-CceEEeCCCCEEEecccCCceEEEECCC
Confidence            678999444  4 44445557888887763  2211111122222333444 6788888888776555554 89999988


Q ss_pred             ccccceeeeeeccccceeEEEEEEc
Q 018591          245 VEIVRWKLACETKAHEMAVLCVCLV  269 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~  269 (353)
                       +    +...........+.++++-
T Consensus       244 -G----~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         244 -G----KLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             -C----cEEEEEECCCCCCccceEe
Confidence             5    3333333333455555554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.29  E-value=1.1  Score=35.31  Aligned_cols=112  Identities=13%  Similarity=-0.020  Sum_probs=62.6

Q ss_pred             eeEEEEcCCCCeEEeec---CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEe-cCCCcc
Q 018591          217 LNSVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWK-REAFGK  292 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~-~~~~~~  292 (353)
                      +.+.+++++++.++...   ....+.++.....     ......+....--++.+++...+....+...+++. ..+++.
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            48899999998776655   3334555544332     11111333333334455566666666666666664 233322


Q ss_pred             eEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc---CCCeEEEEEcC
Q 018591          293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS---LDKSLRVWWVS  337 (353)
Q Consensus       293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~---~dg~i~iw~~~  337 (353)
                      .........-.+.|+++.+|||    |..++...   .++.|.+=-+.
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpD----G~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPD----GTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             eeEEecccccCCceEEEEECCC----CcEEEEEEecCCCCeEEEEEEE
Confidence            1111112222228999999999    88777655   35777776554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.29  E-value=1.8  Score=39.16  Aligned_cols=111  Identities=7%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             CCCeEEeecCCCcEEEeeccccc-----c-----------ceeeeeeccccceeEEEEEEc----CcEEEEecCCCeEEE
Q 018591          225 DGKWVYGGGSDGFVMGWEGNVEI-----V-----------RWKLACETKAHEMAVLCVCLV----GEFLCSGSADKSIGI  284 (353)
Q Consensus       225 ~~~~l~~~~~dg~i~i~d~~~~~-----~-----------~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i  284 (353)
                      +...|+.+..||.|.+|.++.-.     .           ..++...+. -...+..++..    .++||++++...|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            45688999999999999764310     0           000111111 12244455543    678899999898988


Q ss_pred             EecCCCcceEEeccccCCCcCeEEEEeecCCCCC-C-eEEEEccCCCeEEEEEc
Q 018591          285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG-G-FLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~-~~l~s~~~dg~i~iw~~  336 (353)
                      |-............-..|...|.+|+|-++..+. | ..|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8765422111111112366779999999875321 2 48889999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.24  E-value=1.4  Score=36.25  Aligned_cols=138  Identities=14%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             EEeCCeEEEecCC-----CcEEEEEcCCcee---eeeccccCcce--EEEEE-eCCeEEEEcC-----CCcEEEEeCCCC
Q 018591          135 TVYNGLIYSGSWD-----KTLKVWRVADLKC---LESIKAHDDAV--NGLVA-SKGIVYSASA-----DGKIKAWGKELG  198 (353)
Q Consensus       135 ~~~~~~l~~~~~d-----g~v~iwd~~~~~~---~~~~~~~~~~v--~~i~~-~~~~l~~~~~-----dg~i~iwd~~~~  198 (353)
                      .....+++.|+.+     ..+..+|+.+.+-   ...+..-..+.  .+++. .+...+.|+.     ...+..||+.+.
T Consensus        70 ~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        70 SVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             EECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            3344566666654     3566777765442   12221111111  22233 4445555553     235788888766


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC----cEEEeeccccccceeeeeeccc--cce---eEEEEEE-
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG----FVMGWEGNVEIVRWKLACETKA--HEM---AVLCVCL-  268 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~--~~~---~v~~~~~-  268 (353)
                      +-..   ...+..... . ...+...++++.+.|+.++    .+..||..+..  |........  ...   ....+.. 
T Consensus       150 ~W~~---~~~~p~~~r-~-~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~p~~~~~~~~~~~~  222 (323)
T TIGR03548       150 EWFE---LPDFPGEPR-V-QPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ--WQKVADPTTDSEPISLLGAASIKIN  222 (323)
T ss_pred             CeeE---CCCCCCCCC-C-cceEEEECCEEEEEcCCCCccccceEEEecCCCe--eEECCCCCCCCCceeccceeEEEEC
Confidence            5211   111111111 1 2222334566777777654    35678887753  333322110  111   1222333 


Q ss_pred             cCcEEEEecCC
Q 018591          269 VGEFLCSGSAD  279 (353)
Q Consensus       269 ~~~~l~~~~~d  279 (353)
                      ++.+++.|+.+
T Consensus       223 ~~~iyv~GG~~  233 (323)
T TIGR03548       223 ESLLLCIGGFN  233 (323)
T ss_pred             CCEEEEECCcC
Confidence            46788888865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.18  E-value=1.2  Score=34.93  Aligned_cols=194  Identities=13%  Similarity=0.099  Sum_probs=106.0

Q ss_pred             ceeeeeeCcc-CceEEEEE-C-CcEEEEEeCCC--cEEEEeCCCceeeEEeccCc-eeeEEEEEeCCEEE-EecCCCcEE
Q 018591            7 RSLAVLSGHV-GSVSSLAL-C-GEFILSASQGK--DIIVWQQPDLRMFTKFGHGD-GSVKAVVTVGNKVF-TAHQDSRIR   79 (353)
Q Consensus         7 ~~~~~l~~h~-~~v~~~~~-~-~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-s~~~dg~i~   79 (353)
                      +.+.+++... .-...+.| + |.++-+.+.-|  .|+.+|+.+++......-.. -.--.+...++.|+ -.-.++...
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence            4455555322 33446777 4 67777777666  79999999999876654322 22233444444444 556788899


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      +||.++-+     .+..+                            ...+.=..++...+.|+.......++++|..+.+
T Consensus       114 ~yd~~tl~-----~~~~~----------------------------~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  114 VYDPNTLK-----KIGTF----------------------------PYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             EEETTTTE-----EEEEE----------------------------E-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             EEccccce-----EEEEE----------------------------ecCCcceEEEcCCCEEEEECCccceEEECCcccc
Confidence            99987654     33322                            2334556677667777777777889999998877


Q ss_pred             eeeecccc-----CcceEEEEEeCCeEE-EEcCCCcEEEEeCCCCCcccc----cceeee-----eccCCceeeEEEEcC
Q 018591          160 CLESIKAH-----DDAVNGLVASKGIVY-SASADGKIKAWGKELGKSHCH----SLKGIL-----EGHKDVSLNSVVVSD  224 (353)
Q Consensus       160 ~~~~~~~~-----~~~v~~i~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~----~~~~~~-----~~~~~~~v~~~~~~~  224 (353)
                      ....+.-.     -..++.+.+-++.+. =.=....|...|..+++....    .+....     ......+.+.+|+.|
T Consensus       161 ~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~  240 (264)
T PF05096_consen  161 EVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP  240 (264)
T ss_dssp             EEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred             eEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence            66655321     234555666555433 334455667777777762100    000000     011245669999998


Q ss_pred             CCCeEEeec
Q 018591          225 DGKWVYGGG  233 (353)
Q Consensus       225 ~~~~l~~~~  233 (353)
                      ..+.+...+
T Consensus       241 ~~~~l~vTG  249 (264)
T PF05096_consen  241 ETDRLFVTG  249 (264)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCEEEEEe
Confidence            766655544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PLN02193 nitrile-specifier protein

Probab=95.15  E-value=2  Score=37.52  Aligned_cols=148  Identities=10%  Similarity=0.039  Sum_probs=72.0

Q ss_pred             CCeEEEecCC-----CcEEEEEcCCceeee--ecc--ccCcceEEEEE-eCCeEEEEcCCC-----cEEEEeCCCCCccc
Q 018591          138 NGLIYSGSWD-----KTLKVWRVADLKCLE--SIK--AHDDAVNGLVA-SKGIVYSASADG-----KIKAWGKELGKSHC  202 (353)
Q Consensus       138 ~~~l~~~~~d-----g~v~iwd~~~~~~~~--~~~--~~~~~v~~i~~-~~~~l~~~~~dg-----~i~iwd~~~~~~~~  202 (353)
                      ..+++.|+.+     +.+..+|+.+.+-..  .+.  .....-.+++. .+..++.|+.++     .+..||+.+.+-..
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~  308 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH  308 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence            3556666654     458888887654322  111  01111122333 444566666543     36678877654211


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeecCC----CcEEEeeccccccceeeeeec---cccceeEEEEEEcCcEEEE
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWEGNVEIVRWKLACET---KAHEMAVLCVCLVGEFLCS  275 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~~  275 (353)
                      .............  ..++. -+++.++.++.+    ..+.+||+.+..  |......   +.......+...++++++.
T Consensus       309 ~~~~~~~~~~R~~--~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~~iyv~  383 (470)
T PLN02193        309 CSTPGDSFSIRGG--AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGKHIVIF  383 (470)
T ss_pred             CCCCCCCCCCCCC--cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECCEEEEE
Confidence            1000000011111  11222 246666766655    458899988763  3333221   1122223344556778888


Q ss_pred             ecCC--------------CeEEEEecCCC
Q 018591          276 GSAD--------------KSIGIWKREAF  290 (353)
Q Consensus       276 ~~~d--------------g~i~iw~~~~~  290 (353)
                      |+.+              +.+.+||+.+.
T Consensus       384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~  412 (470)
T PLN02193        384 GGEIAMDPLAHVGPGQLTDGTFALDTETL  412 (470)
T ss_pred             CCccCCccccccCccceeccEEEEEcCcC
Confidence            8753              24788888764

>PLN02153 epithiospecifier protein

Probab=95.13  E-value=1.6  Score=36.26  Aligned_cols=53  Identities=8%  Similarity=-0.016  Sum_probs=29.6

Q ss_pred             CcEEEeeccccccceeeeee---ccccceeEEEEEEcCcEEEEecCC--------------CeEEEEecCCC
Q 018591          236 GFVMGWEGNVEIVRWKLACE---TKAHEMAVLCVCLVGEFLCSGSAD--------------KSIGIWKREAF  290 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~iw~~~~~  290 (353)
                      ..+.+||..+..  |.....   .........+....+.+++.|+..              +.+..||..+.
T Consensus       217 ~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        217 NAVQFFDPASGK--WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             CceEEEEcCCCc--EEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            458888887763  333221   111222333445567777777752              25778887653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.11  E-value=1  Score=33.86  Aligned_cols=57  Identities=12%  Similarity=0.180  Sum_probs=37.0

Q ss_pred             EEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591          172 NGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       172 ~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                      ..++. .++.|+.+.....|.+|++.+..   ..+...+..-  ..|..+.++..|+++++--
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~---~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEE---CPLLCTFSTV--GRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCC---CceeEEEcch--hheeEEEeccccceEEEEE
Confidence            34444 33666665777889999998443   1133333333  3358999999999999853

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.08  E-value=0.58  Score=43.87  Aligned_cols=124  Identities=15%  Similarity=0.076  Sum_probs=75.1

Q ss_pred             EEEecCCCcEEEEEcCCceee-----eecccc------CcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccce
Q 018591          141 IYSGSWDKTLKVWRVADLKCL-----ESIKAH------DDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       141 l~~~~~dg~v~iwd~~~~~~~-----~~~~~~------~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~  206 (353)
                      ++..+.+-.|..||+++...-     .-+..|      .....++.|++.   ..+....|+.|++..+.....      
T Consensus       117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~------  190 (1405)
T KOG3630|consen  117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ------  190 (1405)
T ss_pred             EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh------
Confidence            333444557899999763221     111111      233445666444   677888899999987765441      


Q ss_pred             eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc
Q 018591          207 GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE  271 (353)
Q Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (353)
                      ...........++++|+|.|+.++.|...|++.-|...-.... .+..........|.++.|-+.
T Consensus       191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp~~e~yrvl~v~Wl~t  254 (1405)
T KOG3630|consen  191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPPVEENYRVLSVTWLST  254 (1405)
T ss_pred             hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceee-cccCCCcCCCcceeEEEEecc
Confidence            1111223334599999999999999999999999976554211 111111122577888888643

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.02  E-value=2.2  Score=37.15  Aligned_cols=267  Identities=10%  Similarity=0.071  Sum_probs=134.3

Q ss_pred             CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCc-eeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGD-GSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .+|..+.++ ...+..|+.|| +..+|..+++.++.-.... ..|..+..+ ...+..|+.+| +.+.+.+..+     .
T Consensus       165 ~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~-----~  237 (671)
T COG3292         165 TPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWR-----A  237 (671)
T ss_pred             ccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcc-----c
Confidence            467788887 56777888887 6777888887776554433 667777666 77788888775 5666655422     1


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecccc--Ccc
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAH--DDA  170 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~  170 (353)
                      ....+.                          -..+.|..+.-.. ..+-.|+.+|..+.--.+.+-.....+.|  ...
T Consensus       238 sn~~~~--------------------------lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~  291 (671)
T COG3292         238 SNWGPM--------------------------LPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVST  291 (671)
T ss_pred             cccCCC--------------------------CcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCcccc
Confidence            000000                          1223444444444 67777777775433222222222222222  234


Q ss_pred             eEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeecCCCcEEEeeccccc
Q 018591          171 VNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       171 v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~  247 (353)
                      |.++.. .++.+.+++.+|.+++-+-.-.      ....+....+..+...+..|  .+..+.-....|.+.+-+-.++.
T Consensus       292 vnsL~~D~dGsLWv~t~~giv~~~~a~w~------~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~  365 (671)
T COG3292         292 VNSLWLDTDGSLWVGTYGGIVRYLTADWK------RMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGE  365 (671)
T ss_pred             ccceeeccCCCEeeeccCceEEEecchhh------heeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCc
Confidence            455555 5668888888887776443211      11112222222212222222  12222222223333333333331


Q ss_pred             cceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCC-CcceEEecccc-CCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          248 VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA-FGKLCRVGAIT-GHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      .. .......+......+++- +..+-.|+...-+..|+..+ +-   .+.+.. ...++|.++-=.|+    ++ |..|
T Consensus       366 ~v-~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~a---vlde~agl~ss~V~aived~d----ns-LWIG  435 (671)
T COG3292         366 LV-RSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWA---VLDEDAGLPSSEVSAIVEDPD----NS-LWIG  435 (671)
T ss_pred             EE-EEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCccc---ccccccCCcccceeeeeecCC----CC-EEEe
Confidence            11 112222222222233333 44566666664466666655 21   111111 13567888888887    66 8888


Q ss_pred             cCCCeEE
Q 018591          326 SLDKSLR  332 (353)
Q Consensus       326 ~~dg~i~  332 (353)
                      +.+|.++
T Consensus       436 Ts~Glvk  442 (671)
T COG3292         436 TSGGLVK  442 (671)
T ss_pred             ccCCeEe
Confidence            8888654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.98  E-value=2.5  Score=38.04  Aligned_cols=202  Identities=14%  Similarity=0.061  Sum_probs=101.1

Q ss_pred             ceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          130 SISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       130 ~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      ...++..+| +..-..+.--.|+|+++ +|..+..+.-..+.+..+.|+++ .|+....+|++++|++-.......  ..
T Consensus        45 GpIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~--sv  121 (829)
T KOG2280|consen   45 GPIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN--SV  121 (829)
T ss_pred             CceEEEecccccccccccceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc--cc
Confidence            344555565 21111234456888886 57777766555558889999554 899999999999999875541110  01


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee-ccccccceeeeeeccccceeEEEEEE--c---CcEEEEec-CCC
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE-GNVEIVRWKLACETKAHEMAVLCVCL--V---GEFLCSGS-ADK  280 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~-~dg  280 (353)
                      ..+.....+ ..+.+..+|-.+.  ..+|.+.+-+ .... ..++.. ..+....+-.|+..  +   ...++-.. ..+
T Consensus       122 g~e~~~~~I-~ec~~f~~GVavl--t~~g~v~~i~~~~~~-~~~~~~-diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~  196 (829)
T KOG2280|consen  122 GFESQMSDI-VECRFFHNGVAVL--TVSGQVILINGVEEP-KLRKMP-DIPYNELPKSCWTVFQPHRQSTILLDVDVAVG  196 (829)
T ss_pred             ccccccCce-eEEEEecCceEEE--ecCCcEEEEcCCCcc-hhhhCC-CCCCccCCCcceeEecCCCcceeEEeechhhh
Confidence            112222333 4444444553333  3344444433 3221 111111 11111111122222  1   11111111 111


Q ss_pred             eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          281 SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       281 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                       ..++-......  ....+..-.+.+..+..||+    .++|+--..+|.|.+-+....+.+.+..
T Consensus       197 -~~~~q~~~~~~--q~~~~~~~~~~~~ki~VS~n----~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  197 -LHICQVEESRV--QLHALSWPNSSVVKISVSPN----RRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             -hcccceecccc--cccccCCCCceEEEEEEcCC----cceEEEEecCCcEEEEecchhhhhhccC
Confidence             11222221110  11122222356788899998    8899999999999888877766655443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.95  E-value=0.26  Score=37.74  Aligned_cols=72  Identities=10%  Similarity=0.100  Sum_probs=51.5

Q ss_pred             eEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe---cc-cc-------CCCcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591          262 AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV---GA-IT-------GHEGPVKCLQASPNAVGGGFLLYSGSLDKS  330 (353)
Q Consensus       262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~-~~-------~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~  330 (353)
                      ++..+..++.+|++-+.+|.+++||+.+.+.....   .. +.       .....|..+.++.+    |.-+++-+ +|.
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~----G~PiV~ls-ng~   88 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN----GVPIVTLS-NGD   88 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC----CCEEEEEe-CCC
Confidence            45667778999999999999999999987632111   11 11       34567888889877    77777765 467


Q ss_pred             EEEEEcCC
Q 018591          331 LRVWWVSK  338 (353)
Q Consensus       331 i~iw~~~~  338 (353)
                      .+.|+..-
T Consensus        89 ~y~y~~~L   96 (219)
T PF07569_consen   89 SYSYSPDL   96 (219)
T ss_pred             EEEecccc
Confidence            78887653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.89  E-value=1.1  Score=38.29  Aligned_cols=101  Identities=16%  Similarity=0.052  Sum_probs=57.0

Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      |..+..++.|..++..+.+|.+.++=.+.-    -....+......|.|-.                 +.+.+     .+
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rw----G~~s~~eDgk~~v~CRt-----------------~~i~~-----~~  159 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRW----GKNSEFEDGKSTVNCRT-----------------TPVAE-----RF  159 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhc----CccceecCCCceEEEEe-----------------ecccc-----ee
Confidence            467788899999999999996655432211    12222222222333322                 22221     11


Q ss_pred             ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ..-. ..-.+..++|+|+.-. ...|..-+.|..||+|++.+...+...
T Consensus       160 ftss-~~ltl~Qa~WHP~S~~-D~hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  160 FTSS-TSLTLKQAAWHPSSIL-DPHLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             eccC-CceeeeeccccCCccC-CceEEEEecCcEEEEEecCCcchhhcc
Confidence            1111 1123667788887321 246677778999999999988776543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.76  E-value=1.4  Score=39.93  Aligned_cols=149  Identities=10%  Similarity=0.073  Sum_probs=86.3

Q ss_pred             CCeEEEecCCCcEEEEEcCCceeee------ec----------------cccCcceEEEEE----eCCeEEEEcCCCcEE
Q 018591          138 NGLIYSGSWDKTLKVWRVADLKCLE------SI----------------KAHDDAVNGLVA----SKGIVYSASADGKIK  191 (353)
Q Consensus       138 ~~~l~~~~~dg~v~iwd~~~~~~~~------~~----------------~~~~~~v~~i~~----~~~~l~~~~~dg~i~  191 (353)
                      .++++++. .+.|.+|+.+......      .+                ......|+.|..    ....|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            35555554 6889999875422110      11                001234555554    344899999999999


Q ss_pred             EEeCCCCC-------------cccccceeeeeccCCceeeEEEEc--CCCCeEEeecCCCcEEEeeccccccceeee-ee
Q 018591          192 AWGKELGK-------------SHCHSLKGILEGHKDVSLNSVVVS--DDGKWVYGGGSDGFVMGWEGNVEIVRWKLA-CE  255 (353)
Q Consensus       192 iwd~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~  255 (353)
                      +|.++.--             .........+....+.....++++  ...+++|+++....|.+|-........... ..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            99652110             000001111222223345889998  888899999999999998766532111111 11


Q ss_pred             ccccceeEEEEEEc---Cc---EEEEecCCCeEEEEec
Q 018591          256 TKAHEMAVLCVCLV---GE---FLCSGSADKSIGIWKR  287 (353)
Q Consensus       256 ~~~~~~~v~~~~~~---~~---~l~~~~~dg~i~iw~~  287 (353)
                      ...|..+..++-.+   +.   .|++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            23445554555443   22   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=94.58  E-value=2.2  Score=35.26  Aligned_cols=155  Identities=10%  Similarity=-0.022  Sum_probs=79.1

Q ss_pred             CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          168 DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       168 ~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      ...+.++.+ +++.++..+..|.+..- .+.+..    .-..........+..+.+.++++.++++ ..|.+++=....+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~----tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT----AWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC----eEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence            456778887 45566666666765532 112210    1112222333445889999998877665 4565543223322


Q ss_pred             ccceeeeeec-cccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591          247 IVRWKLACET-KAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       247 ~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s  324 (353)
                       ..++..... ......+..+.+. ...+++++.+|.+. ...+.++....+.....-....+.+.|..+    ++.++ 
T Consensus       246 -~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~----~~~~~-  318 (334)
T PRK13684        246 -ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDP----EKGFV-  318 (334)
T ss_pred             -CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCC----CceEE-
Confidence             122221111 1112234445443 22345555677654 445555544443221222346788888866    55555 


Q ss_pred             ccCCCeEEEEE
Q 018591          325 GSLDKSLRVWW  335 (353)
Q Consensus       325 ~~~dg~i~iw~  335 (353)
                      .+..|.|.-|+
T Consensus       319 ~G~~G~il~~~  329 (334)
T PRK13684        319 LGQRGVLLRYV  329 (334)
T ss_pred             ECCCceEEEec
Confidence            55688887765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.55  E-value=0.18  Score=45.79  Aligned_cols=187  Identities=12%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             CcEEEEEcCCcee-eeeccccCcceEEEEE-eCC--eEEEEcCCCcEEEEeCCC--CCcccccceeeeeccCCceeeEEE
Q 018591          148 KTLKVWRVADLKC-LESIKAHDDAVNGLVA-SKG--IVYSASADGKIKAWGKEL--GKSHCHSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       148 g~v~iwd~~~~~~-~~~~~~~~~~v~~i~~-~~~--~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~  221 (353)
                      +.+++-+..+... -..+++..+.+-.+.| +.+  .+.  -.-|.+.+||+.-  ++..+........ ..+..+.-+.
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~-p~gs~~~~V~  187 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPIT-PYGSDPQLVS  187 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecC-cCCCCcceee
Confidence            4566655443221 1223566777888888 222  222  3447788998763  3311111122222 2222225555


Q ss_pred             EcC---CCCeEEeecCCCcEEEeeccccccceeeeeeccccc-------------eeEEEEEEcCcEEEEecCCCeEEEE
Q 018591          222 VSD---DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-------------MAVLCVCLVGEFLCSGSADKSIGIW  285 (353)
Q Consensus       222 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~l~~~~~dg~i~iw  285 (353)
                      |.|   +..++..+..++.+++........     ..+.+|.             ..+-.+++||..++....||.++.|
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~  262 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY  262 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence            554   567888888899999887766421     1122232             2345688899999999999999888


Q ss_pred             ecCCC--cceEEeccccCCC-cCeEEEEeecCCC-----CCCeEEEEccC-CCeEEEEEcCCCCCc
Q 018591          286 KREAF--GKLCRVGAITGHE-GPVKCLQASPNAV-----GGGFLLYSGSL-DKSLRVWWVSKQSST  342 (353)
Q Consensus       286 ~~~~~--~~~~~~~~~~~h~-~~v~~~~~~~~~~-----~~~~~l~s~~~-dg~i~iw~~~~~~~~  342 (353)
                      .+.-.  ....++...+.|. ++-.|.-|.....     +--.+++++++ +..+++|.-..-+|+
T Consensus       263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            76422  2233566677777 3333333332210     00234555554 456999988777666

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.54  E-value=2.8  Score=38.52  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEE
Q 018591          216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  295 (353)
                      .|..+.++|+|++++..+..| |.|-.+...   +.....+.+....+.                 .+.+.+..     .
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r---~g~~~~~~~g~~~i~-----------------Crt~~v~~-----~  139 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRR---WGKNGEFEDGKKEIN-----------------CRTVPVDE-----R  139 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccc---cCccccccCCCccee-----------------EEEEEech-----h
Confidence            468999999999999988876 444444221   001111111111111                 12222221     0


Q ss_pred             eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      +. ...+...|..+.|+|.... +..|+.-..|+++|+||+.+....
T Consensus       140 ~~-~~~~~~~i~qv~WhP~s~~-~~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  140 FF-TSNSSLEIKQVRWHPWSES-DSHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             hc-cCCCCceEEEEEEcCCCCC-CCeEEEEecCCEEEEEecCCCCCC
Confidence            10 1123456778888886332 467777777888888888765433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.54  E-value=1.8  Score=33.94  Aligned_cols=183  Identities=11%  Similarity=0.026  Sum_probs=99.0

Q ss_pred             eEEEEE-eC-CeEEEecCCC--cEEEEEcCCceeeeeccccC-cceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCccccc
Q 018591          131 ISCLTV-YN-GLIYSGSWDK--TLKVWRVADLKCLESIKAHD-DAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHS  204 (353)
Q Consensus       131 i~~~~~-~~-~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~  204 (353)
                      ...+.| .. .++-+.+.-|  .|+.+|+.+++......-.. ----.++.-++ .....=.++...+||..+.+     
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~-----  121 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK-----  121 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE-----
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce-----
Confidence            446777 44 4445555555  79999999998766543221 22234455344 44445567889999998876     


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc-ceeEEEEEE-cCcEEEEecCCCeE
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCL-VGEFLCSGSADKSI  282 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~l~~~~~dg~i  282 (353)
                      ....+.-... - ..++  .+++.|+.+.....++.+|..+-...........+. -..+..+.+ +|...|=.-....|
T Consensus       122 ~~~~~~y~~E-G-WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I  197 (264)
T PF05096_consen  122 KIGTFPYPGE-G-WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEE
T ss_pred             EEEEEecCCc-c-eEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeE
Confidence            4444443322 2 5566  557778887778889999987653322222221111 112333444 45555555566677


Q ss_pred             EEEecCCCcceEEec--cc----------cCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          283 GIWKREAFGKLCRVG--AI----------TGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       283 ~iw~~~~~~~~~~~~--~~----------~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      ...|..+++....+.  .+          .....-.+.|++.|.   .+.+++||
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~---~~~l~vTG  249 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE---TDRLFVTG  249 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT---TTEEEEEE
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC---CCEEEEEe
Confidence            777888776322110  01          011356899999998   25666666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.39  E-value=2.8  Score=35.63  Aligned_cols=279  Identities=12%  Similarity=0.034  Sum_probs=135.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCce-----eeEEeccCceeeEEEEEe------CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           26 GEFILSASQGKDIIVWQQPDLR-----MFTKFGHGDGSVKAVVTV------GNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      .+.++.||.+|.++||+....+     ++-+.. -..+|..+...      +...++.=.-..+.+|.+......     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~-----  110 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT-----  110 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC-----
Confidence            4599999999999999975433     222222 24577777653      222333344567788877432210     


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCc--eEEEE---EeC----CeEEEecCCCcEEEEEcCCceeeeecc
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS--ISCLT---VYN----GLIYSGSWDKTLKVWRVADLKCLESIK  165 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~---~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~  165 (353)
                        ......                ........|.-.  ...++   |-.    +.+.+-+.||.+.+++-+.......+.
T Consensus       111 --~~~g~~----------------~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp  172 (418)
T PF14727_consen  111 --VEHGNQ----------------YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP  172 (418)
T ss_pred             --cccCcE----------------EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC
Confidence              000000                000111122221  11222   211    688889999999999976654444443


Q ss_pred             ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCc----------------ccccceeeeeccCCceeeEE---EEcC
Q 018591          166 AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKS----------------HCHSLKGILEGHKDVSLNSV---VVSD  224 (353)
Q Consensus       166 ~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~v~~~---~~~~  224 (353)
                      . .--...+.+  ..+.+++++.+..+.-|....-..                ....+...+.-.-+..+..+   .++.
T Consensus       173 ~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~  251 (418)
T PF14727_consen  173 D-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS  251 (418)
T ss_pred             C-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence            3 112223444  455888888888888886422110                00111111111112222232   2332


Q ss_pred             CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE----cC---cEEEEecCCCeEEEEecCCCcceEEec
Q 018591          225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL----VG---EFLCSGSADKSIGIWKREAFGKLCRVG  297 (353)
Q Consensus       225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~  297 (353)
                      ....+++-+ ...+.+.+-..   ..+....+............    .+   ..++.++.++++.||.-.+     .+.
T Consensus       252 ~~~~IvvLg-er~Lf~l~~~G---~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~W  322 (418)
T PF14727_consen  252 SESDIVVLG-ERSLFCLKDNG---SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVW  322 (418)
T ss_pred             CCceEEEEe-cceEEEEcCCC---eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEE
Confidence            323333333 23355554432   12233333322222222222    12   2588899999999997432     121


Q ss_pred             cccCCCcCeEEEEee--cCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          298 AITGHEGPVKCLQAS--PNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       298 ~~~~h~~~v~~~~~~--~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ..+-...+| ++...  ++.   ...+++-+.+|.+.+-=+.+.-..
T Consensus       323 sA~l~~~PV-al~v~~~~~~---~G~IV~Ls~~G~L~v~YLGTdPs~  365 (418)
T PF14727_consen  323 SAQLPHVPV-ALSVANFNGL---KGLIVSLSDEGQLSVSYLGTDPSL  365 (418)
T ss_pred             ecCCCCCCE-EEEecccCCC---CceEEEEcCCCcEEEEEeCCCCcc
Confidence            111122222 33332  221   458899999999998877655433

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.35  E-value=4.7  Score=37.98  Aligned_cols=116  Identities=13%  Similarity=-0.019  Sum_probs=73.5

Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG  297 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  297 (353)
                      .-.+..|...++.+| ....+++||+...+...+.  .++.-+..|..+.+.+..+++|...-.+.++..+...+...+.
T Consensus       937 ~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~--e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~f 1013 (1205)
T KOG1898|consen  937 PVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKC--ELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVF 1013 (1205)
T ss_pred             cceEEeccCCEEEEe-cccEEEEeeCChHHHHhhh--hhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEE
Confidence            446667766666555 4567999999877443333  2233567888899999999999877777766554433311111


Q ss_pred             cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      .-..-...|+++.+-.     ...+|.+..=|.+.+-.+.....
T Consensus      1014 adD~~pR~Vt~~~~lD-----~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1014 ADDPVPRHVTALELLD-----YDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred             eCCCccceeeEEEEec-----CCceeeccccCcEEEEECCCcch
Confidence            1122234577776654     35788888888888877765443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.23  E-value=0.48  Score=36.32  Aligned_cols=77  Identities=13%  Similarity=0.244  Sum_probs=45.4

Q ss_pred             cceEEEEEeCCeEEEEcCCCcEEEEeCCCCCccccc--ceeeeec------cCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591          169 DAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHS--LKGILEG------HKDVSLNSVVVSDDGKWVYGGGSDGFVMG  240 (353)
Q Consensus       169 ~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  240 (353)
                      .++..+...++++++.+.+|.+++||+.+.+.....  +...+..      .....|..+.++.+|.-+++-+ +|..+.
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~   91 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS   91 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence            344455556667777777788888887776521111  1111111      2233357788888887666544 577888


Q ss_pred             eecccc
Q 018591          241 WEGNVE  246 (353)
Q Consensus       241 ~d~~~~  246 (353)
                      |+..-+
T Consensus        92 y~~~L~   97 (219)
T PF07569_consen   92 YSPDLG   97 (219)
T ss_pred             eccccc
Confidence            887654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02153 epithiospecifier protein

Probab=93.97  E-value=3.1  Score=34.57  Aligned_cols=151  Identities=9%  Similarity=0.021  Sum_probs=69.6

Q ss_pred             CCeEEEecCC-------CcEEEEEcCCceeeee--ccc-cCc---ceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCC
Q 018591          138 NGLIYSGSWD-------KTLKVWRVADLKCLES--IKA-HDD---AVNGLVASKGIVYSASAD-----GKIKAWGKELGK  199 (353)
Q Consensus       138 ~~~l~~~~~d-------g~v~iwd~~~~~~~~~--~~~-~~~---~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~  199 (353)
                      ...++.|+.+       ..+.+||+.+.+-...  ... ...   ....+.+.+..++.|+.+     ..+.+||+.+.+
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            3556666653       3578888876542221  110 011   122333355566666653     247788887654


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----------CcEEEeeccccccceeeeeecc---ccceeEEE
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----------GFVMGWEGNVEIVRWKLACETK---AHEMAVLC  265 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~---~~~~~v~~  265 (353)
                      -................-.+++. -++++.+.|+.+           ..+.+||..+..  |.......   ........
T Consensus       113 W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~~~~~r~~~~~  189 (341)
T PLN02153        113 WTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGENFEKRGGAGF  189 (341)
T ss_pred             EEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCCCCCCCCcceE
Confidence            11100000000011111022222 345666666643           247788887652  33222211   11122223


Q ss_pred             EEEcCcEEEEecCC-------------CeEEEEecCCCc
Q 018591          266 VCLVGEFLCSGSAD-------------KSIGIWKREAFG  291 (353)
Q Consensus       266 ~~~~~~~l~~~~~d-------------g~i~iw~~~~~~  291 (353)
                      ...++++++.|+.+             ..+.+||..+.+
T Consensus       190 ~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~  228 (341)
T PLN02153        190 AVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK  228 (341)
T ss_pred             EEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence            34567766665532             468889987643

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.95  E-value=0.38  Score=42.94  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             cCcEEEEecCCCeEEEEecCC----CcceEEec--------ccc-----------CCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          269 VGEFLCSGSADKSIGIWKREA----FGKLCRVG--------AIT-----------GHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       269 ~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~--------~~~-----------~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      ++..++.+..||.+.......    +.......        .+.           ...+.+.++++++..-.+..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            677888888888888877664    11111000        000           1123456666666100016799999


Q ss_pred             cCCCeEEEEEcCCCCCcc
Q 018591          326 SLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       326 ~~dg~i~iw~~~~~~~~~  343 (353)
                      +.|+++|+||+.+++++.
T Consensus       237 ~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             ETTSEEEEEETTTTCEEE
T ss_pred             eCCCeEEEEECCCCeEEE
Confidence            999999999999999844

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.74  E-value=4.5  Score=35.54  Aligned_cols=116  Identities=13%  Similarity=0.081  Sum_probs=62.9

Q ss_pred             ecCCceEEEEEeC------CeEEEecCCCcEEEEEcCC-----ceeee----eccc-cCcceEEEEEeCC--eEEEEcCC
Q 018591          126 EHADSISCLTVYN------GLIYSGSWDKTLKVWRVAD-----LKCLE----SIKA-HDDAVNGLVASKG--IVYSASAD  187 (353)
Q Consensus       126 ~~~~~i~~~~~~~------~~l~~~~~dg~v~iwd~~~-----~~~~~----~~~~-~~~~v~~i~~~~~--~l~~~~~d  187 (353)
                      |.-..|..+.|.|      ..+++.-....|.+|-+.-     .+.+.    ++.. ..---..+.|+|.  .|+.-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            4556788899987      2455556668899998752     22211    1111 0111234566444  34333333


Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeecccc
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVE  246 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  246 (353)
                      ..-.+++++...     ............|.|.+|.+||+.|+++- ..=.-++||-...
T Consensus       134 dvSV~~sV~~d~-----srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  134 DVSVLPSVHCDS-----SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             ceeEeeeeeeCC-----ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            333455555443     12222223344469999999998877653 3335677876543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.72  E-value=3.1  Score=33.67  Aligned_cols=183  Identities=13%  Similarity=0.137  Sum_probs=81.3

Q ss_pred             ceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc---ccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591          130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK---AHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSL  205 (353)
Q Consensus       130 ~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  205 (353)
                      ...++.|..+.....+..+. .+...+.++.=..+.   .-.+....+.. .++....++..|.|.  ...++-..   -
T Consensus        63 ~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy--~T~DgG~t---W  136 (302)
T PF14870_consen   63 HLNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIY--RTTDGGKT---W  136 (302)
T ss_dssp             EEEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EE--EESSTTSS---E
T ss_pred             eEEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEE--EeCCCCCC---e
Confidence            35667777633333444453 333333333222221   11233334443 555554455555543  33333211   1


Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEE
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIG  283 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  283 (353)
                      ...... ....+..+..+++|++++++.......-||.-..  .+.+....  ....+..+.+  ++.+.+ ....|.|+
T Consensus       137 ~~~~~~-~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~~~r~--~~~riq~~gf~~~~~lw~-~~~Gg~~~  210 (302)
T PF14870_consen  137 QAVVSE-TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQPHNRN--SSRRIQSMGFSPDGNLWM-LARGGQIQ  210 (302)
T ss_dssp             EEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EEEE----SSS-EEEEEE-TTS-EEE-EETTTEEE
T ss_pred             eEcccC-CcceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceEEccC--ccceehhceecCCCCEEE-EeCCcEEE
Confidence            122222 2233588888999999999877766667775433  22332222  3345555555  455544 44888888


Q ss_pred             EEe-cCCCcceEE-eccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          284 IWK-REAFGKLCR-VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       284 iw~-~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                      .=+ ....+.... +..+..-.-.+.+++|.++    +...++|+..
T Consensus       211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~----~~~wa~gg~G  253 (302)
T PF14870_consen  211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP----NEIWAVGGSG  253 (302)
T ss_dssp             EEE-TTEEEEE---B-TTSS--S-EEEEEESSS----S-EEEEESTT
T ss_pred             EccCCCCccccccccCCcccCceeeEEEEecCC----CCEEEEeCCc
Confidence            877 222222111 1111122234899999998    7777766644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.64  E-value=3.7  Score=34.33  Aligned_cols=85  Identities=14%  Similarity=0.070  Sum_probs=48.5

Q ss_pred             CCcEEEEEcCCceeeeeccccCcceEEEEEeC-CeEEEEcCCCcEEEEeCCCCCccccccee---eeecc---------C
Q 018591          147 DKTLKVWRVADLKCLESIKAHDDAVNGLVASK-GIVYSASADGKIKAWGKELGKSHCHSLKG---ILEGH---------K  213 (353)
Q Consensus       147 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~---------~  213 (353)
                      .+.+.++|+++++....... ...+....|+| +..++--.++.|.+++..++.........   .+.+-         -
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~  100 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF  100 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence            36789999998766555443 56777888843 33333445688999988766421100000   00000         1


Q ss_pred             CceeeEEEEcCCCCeEEeec
Q 018591          214 DVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~  233 (353)
                      +.. ..+.||||+++|+...
T Consensus       101 ~~~-~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen  101 DRR-SAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             SSS-BSEEE-TTSSEEEEEE
T ss_pred             ccc-cceEECCCCCEEEEEE
Confidence            122 6789999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.57  E-value=2.5  Score=36.26  Aligned_cols=142  Identities=18%  Similarity=0.115  Sum_probs=84.3

Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-------eEEeecCCCcEEEeeccccccceee
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-------WVYGGGSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~  252 (353)
                      .+..+.....++-.|++.++     ....+..+...   -+.|.|..+       .-++|-.+..|.-.|.+........
T Consensus       482 i~~dg~~~~kLykmDIErGk-----vveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGK-----VVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             EEecCCCcccceeeecccce-----eeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            34455566667777888777     77777777763   467777432       2234445555655565543211111


Q ss_pred             e--eeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591          253 A--CETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKS  330 (353)
Q Consensus       253 ~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~  330 (353)
                      .  ........-.....-...++|+++..|.|++||.-...   .-..+.+....|..+..+.+    |+++++.+.. .
T Consensus       554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta~----Gk~ilaTCk~-y  625 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTAN----GKHILATCKN-Y  625 (776)
T ss_pred             eeehhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeecC----CcEEEEeecc-e
Confidence            1  01111111112222236799999999999999965432   23345666778999999998    8887777655 5


Q ss_pred             EEEEEcC
Q 018591          331 LRVWWVS  337 (353)
Q Consensus       331 i~iw~~~  337 (353)
                      +.+-|+.
T Consensus       626 llL~d~~  632 (776)
T COG5167         626 LLLTDVP  632 (776)
T ss_pred             EEEEecc
Confidence            6666654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.19  E-value=4.7  Score=34.11  Aligned_cols=66  Identities=18%  Similarity=0.039  Sum_probs=34.0

Q ss_pred             EEEcCcEEEEecCCC----------------------eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591          266 VCLVGEFLCSGSADK----------------------SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY  323 (353)
Q Consensus       266 ~~~~~~~l~~~~~dg----------------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~  323 (353)
                      ...++.+++.|+.+.                      .+.+||.++.+ ...+..+..-.....+  ..-+    +++++
T Consensus       276 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~-W~~~~~lp~~r~~~~a--v~~~----~~iyv  348 (376)
T PRK14131        276 GYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK-WQKVGELPQGLAYGVS--VSWN----NGVLL  348 (376)
T ss_pred             eeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc-ccccCcCCCCccceEE--EEeC----CEEEE
Confidence            345678888887541                      34578887643 3233322211111222  2333    67888


Q ss_pred             EccCCC------eEEEEEcCC
Q 018591          324 SGSLDK------SLRVWWVSK  338 (353)
Q Consensus       324 s~~~dg------~i~iw~~~~  338 (353)
                      .|+...      .|..++.+.
T Consensus       349 ~GG~~~~~~~~~~v~~~~~~~  369 (376)
T PRK14131        349 IGGETAGGKAVSDVTLLSWDG  369 (376)
T ss_pred             EcCCCCCCcEeeeEEEEEEcC
Confidence            887642      455555543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.17  E-value=1.6  Score=34.31  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=69.9

Q ss_pred             eEEEEcCCC-CeEEeecCCC-cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecC-----CCeEEEEecCCC
Q 018591          218 NSVVVSDDG-KWVYGGGSDG-FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSA-----DKSIGIWKREAF  290 (353)
Q Consensus       218 ~~~~~~~~~-~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-----dg~i~iw~~~~~  290 (353)
                      ..++++|.. .-++.+-.-| ...++|....+...........|-..--.++++|.+|.+.-+     -|.|-|||.+. 
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~-  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE-  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc-
Confidence            345555543 2233333333 356778777655545444444555555678889999887654     37899999984 


Q ss_pred             cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591          291 GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS  326 (353)
Q Consensus       291 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~  326 (353)
                       .+..+.++..|.-....+.+.+|    |+.|+.+.
T Consensus       150 -~fqrvgE~~t~GiGpHev~lm~D----Grtlvvan  180 (366)
T COG3490         150 -GFQRVGEFSTHGIGPHEVTLMAD----GRTLVVAN  180 (366)
T ss_pred             -ccceecccccCCcCcceeEEecC----CcEEEEeC
Confidence             45588889999888899999999    99888774

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.01  E-value=6.7  Score=35.40  Aligned_cols=108  Identities=18%  Similarity=0.121  Sum_probs=54.4

Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEE---eeccccccceeeeeeccc-cceeEEEEEEc-CcEEEEecCCCeEEEEecCCCc
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMG---WEGNVEIVRWKLACETKA-HEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      |..+.|||||..++... +|.|.+   -....+.........+.. -...+..+.|. +..|+++..++.-.+|.+.-..
T Consensus       450 Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG  528 (591)
T PRK13616        450 ISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDG  528 (591)
T ss_pred             cCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCC
Confidence            59999999999887765 466766   332333211111111211 12224566664 3335565555545555543222


Q ss_pred             ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          292 KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                      .......-.....++.+++-++.      .++....+|.+
T Consensus       529 ~~~~~~~~~n~~~~v~~vaa~~~------~iyv~~~~g~~  562 (591)
T PRK13616        529 SNSDALPSRNLSAPVVAVAASPS------TVYVTDARAVL  562 (591)
T ss_pred             ccccccCCCCccCceEEEecCCc------eEEEEcCCceE
Confidence            11111011113567888887764      34555666633

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.94  E-value=4.9  Score=33.65  Aligned_cols=51  Identities=6%  Similarity=0.044  Sum_probs=34.7

Q ss_pred             CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCc
Q 018591           35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      .+...++|+++++....... ...+....|+  ++.++-.. ++.|.+++..++.
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence            46789999998776654433 4566667776  77777665 4689998876663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.90  E-value=1.5  Score=41.35  Aligned_cols=122  Identities=12%  Similarity=0.008  Sum_probs=74.1

Q ss_pred             eccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccce-eeeeecc------ccceeEEEEEEc---CcEEEEec
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVRW-KLACETK------AHEMAVLCVCLV---GEFLCSGS  277 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~-~~~~~~~------~~~~~v~~~~~~---~~~l~~~~  277 (353)
                      .-+...++..+...+|+...++  .+.+-.|..||++.-.... .....+.      ....-..++.|+   ....++..
T Consensus        96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen   96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence            3344444566666777654443  3344478889987632111 0011111      112233455555   34567788


Q ss_pred             CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .|+.|++..+.....  .+.. ..-....++++|+|.    |+.++.|-..|++.-|...-
T Consensus       176 ~dlsl~V~~~~~~~~--~v~s-~p~t~~~Tav~WSpr----GKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQ--NVTS-FPVTNSQTAVLWSPR----GKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             cccchhhhhhhhhhh--hhcc-cCcccceeeEEeccc----cceeeEecCCCeEEEeeccc
Confidence            899999988764332  2222 224567899999999    99999999999998886543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.81  E-value=5.7  Score=34.10  Aligned_cols=195  Identities=13%  Similarity=0.070  Sum_probs=98.5

Q ss_pred             eEEEEEeC--CeEEEe-cCCC----cEEEEEcCCceeeeec-cccCcceEEEEE-eC-C-eEEEEcCC----------Cc
Q 018591          131 ISCLTVYN--GLIYSG-SWDK----TLKVWRVADLKCLESI-KAHDDAVNGLVA-SK-G-IVYSASAD----------GK  189 (353)
Q Consensus       131 i~~~~~~~--~~l~~~-~~dg----~v~iwd~~~~~~~~~~-~~~~~~v~~i~~-~~-~-~l~~~~~d----------g~  189 (353)
                      +..+.++|  ++++.+ +..|    .+++.|+.+++.+... ..  .....+.| .+ . ++.+...+          ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            33566777  555543 3334    5999999999776532 22  11223888 33 2 34444322          23


Q ss_pred             EEEEeCCCCCcccccceeeeeccCCce-eeEEEEcCCCCeEEeecCC----CcEEEeecccc---ccceeeeeeccccce
Q 018591          190 IKAWGKELGKSHCHSLKGILEGHKDVS-LNSVVVSDDGKWVYGGGSD----GFVMGWEGNVE---IVRWKLACETKAHEM  261 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~---~~~~~~~~~~~~~~~  261 (353)
                      |+.|++.+....   -...+....... ...+..++++++++.....    ..+.+.++...   ...+.....  ....
T Consensus       204 v~~~~~gt~~~~---d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--~~~~  278 (414)
T PF02897_consen  204 VYRHKLGTPQSE---DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--REDG  278 (414)
T ss_dssp             EEEEETTS-GGG----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--SSSS
T ss_pred             EEEEECCCChHh---CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--CCCc
Confidence            778888776511   123444444333 4688899999988754332    34677777663   222222221  1222


Q ss_pred             eEEEEEEcCc-EEEEe---cCCCeEEEEecCCCcceEEeccccCCCc--CeEEEEeecCCCCCCeEEEEccCCC--eEEE
Q 018591          262 AVLCVCLVGE-FLCSG---SADKSIGIWKREAFGKLCRVGAITGHEG--PVKCLQASPNAVGGGFLLYSGSLDK--SLRV  333 (353)
Q Consensus       262 ~v~~~~~~~~-~l~~~---~~dg~i~iw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~l~s~~~dg--~i~i  333 (353)
                      ....+...+. +++..   ..++.|...++.+.........+..|..  .+..+....     +.+++..-.++  .|++
T Consensus       279 ~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-----~~Lvl~~~~~~~~~l~v  353 (414)
T PF02897_consen  279 VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-----DYLVLSYRENGSSRLRV  353 (414)
T ss_dssp             -EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-----TEEEEEEEETTEEEEEE
T ss_pred             eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-----CEEEEEEEECCccEEEE
Confidence            2223333344 33332   2356777788877653111113344444  455555543     35556555555  5888


Q ss_pred             EEcC
Q 018591          334 WWVS  337 (353)
Q Consensus       334 w~~~  337 (353)
                      +++.
T Consensus       354 ~~~~  357 (414)
T PF02897_consen  354 YDLD  357 (414)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            8888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.77  E-value=7.5  Score=36.48  Aligned_cols=77  Identities=14%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             EEEEeCCEEEEecCCCcEEEEEcccCccceeEEe--eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591           61 AVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLV--DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN  138 (353)
Q Consensus        61 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  138 (353)
                      +++-.++.++.|+.+|.+.+|.+...........  .....                     ...  -+..+|..+...+
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~---------------------~~~--~~kk~i~~l~~~~   77 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKF---------------------EKE--FSKKPINKLLVCA   77 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHH---------------------hhh--hccchhHHHhhcc
Confidence            4444599999999999999999876542111110  00000                     000  1245666666666


Q ss_pred             -CeEEEecCCCcEEEEEcCCcee
Q 018591          139 -GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus       139 -~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                       ..++-.-.|+.|.++++.+.+.
T Consensus        78 ~~~~ll~l~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   78 SLELLLILSDSQIAVHKLPELEP  100 (877)
T ss_pred             hhcchheecCCcceeeecCcccc
Confidence             3333344567788888877655

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.69  E-value=6  Score=34.09  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=25.2

Q ss_pred             cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       304 ~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      ..|.++...+.    .+.|++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~----r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPS----RRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETT----TTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCC----cCEEEEEeCCCcEEEEEEeC
Confidence            34999999998    78999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.59  E-value=3.6  Score=35.35  Aligned_cols=141  Identities=9%  Similarity=0.102  Sum_probs=78.2

Q ss_pred             EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--------CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591           29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT  100 (353)
Q Consensus        29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  100 (353)
                      +..|+....++--|++-|+.+..+..|...+......        .+.|+-.+.. .|.-.|.+-.. ........-   
T Consensus       483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~g-NKi~v~esK---  557 (776)
T COG5167         483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARG-NKIKVVESK---  557 (776)
T ss_pred             EecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeeccc-ceEEecccccC-Cceeeeeeh---
Confidence            4445556677777888888888888776654332221        2344444443 44333443322 111110000   


Q ss_pred             cceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eC
Q 018591          101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SK  178 (353)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~  178 (353)
                                            -+ .......|..... +++++|+..|.|++||--.......+++-...|..+.. .+
T Consensus       558 ----------------------dY-~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~  614 (776)
T COG5167         558 ----------------------DY-KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTAN  614 (776)
T ss_pred             ----------------------hc-cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecC
Confidence                                  00 1112223333333 89999999999999995433344456667788888888 44


Q ss_pred             CeEEEEcCCCcEEEEeCCC
Q 018591          179 GIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       179 ~~l~~~~~dg~i~iwd~~~  197 (353)
                      +..+.+.....+.+-|++-
T Consensus       615 Gk~ilaTCk~yllL~d~~i  633 (776)
T COG5167         615 GKHILATCKNYLLLTDVPI  633 (776)
T ss_pred             CcEEEEeecceEEEEeccc
Confidence            4333333456788877653

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=92.34  E-value=0.59  Score=24.32  Aligned_cols=24  Identities=13%  Similarity=0.196  Sum_probs=12.2

Q ss_pred             EEEECCcEEEEEeCCCcEEEEeCC
Q 018591           21 SLALCGEFILSASQGKDIIVWQQP   44 (353)
Q Consensus        21 ~~~~~~~~l~s~~~dg~v~vwd~~   44 (353)
                      ++++.+..++.++.||.+..+|.+
T Consensus        16 ~~~v~~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   16 SPAVAGGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             --EECTSEEEEE-TTSEEEEEETT
T ss_pred             CCEEECCEEEEEcCCCEEEEEeCC
Confidence            344555556666666666666543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.31  E-value=12  Score=36.49  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=82.9

Q ss_pred             cCCCcEEEEEcCCceeeeeccccCcceEEEEE---eCC-------eEEEEcCCCcEEEEeCCCCCc--ccccceeeeec-
Q 018591          145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA---SKG-------IVYSASADGKIKAWGKELGKS--HCHSLKGILEG-  211 (353)
Q Consensus       145 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~---~~~-------~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-  211 (353)
                      +.|+.+.+|+.+++.....+.+-...|..+..   .++       +++..+.--.|.++-+.-.+.  ........+.. 
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            46789999999998777888777777777766   333       344444445566654432210  00011111211 


Q ss_pred             cCCceeeEEEEcCCCCeEEeecCCCcEEEeecc----cc---c-c-------------ceeeeeeccccceeEEEEEEc-
Q 018591          212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN----VE---I-V-------------RWKLACETKAHEMAVLCVCLV-  269 (353)
Q Consensus       212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~---~-~-------------~~~~~~~~~~~~~~v~~~~~~-  269 (353)
                      -.+..|+++....+|+.+++|- ||  .+|.+.    .+   + .             ...+......+..+|..+..| 
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            2244468888888888777665 44  344321    11   0 0             001111112445678788776 


Q ss_pred             -CcEEEEecCCCeEEEEecCC
Q 018591          270 -GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       270 -~~~l~~~~~dg~i~iw~~~~  289 (353)
                       .+.+.+-+..|+|++|++..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence             56788889999999999976

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.18  E-value=6.1  Score=32.94  Aligned_cols=98  Identities=16%  Similarity=0.104  Sum_probs=48.2

Q ss_pred             CCCCeEEeecCCC------cEEEeeccccccceeeeeecccc-----c--eeEEEEEEcCcEEEEecCC-----------
Q 018591          224 DDGKWVYGGGSDG------FVMGWEGNVEIVRWKLACETKAH-----E--MAVLCVCLVGEFLCSGSAD-----------  279 (353)
Q Consensus       224 ~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~-----~--~~v~~~~~~~~~l~~~~~d-----------  279 (353)
                      -++++.+.|+.+.      .+..|++......|.....+...     .  ........++++.+.|+.+           
T Consensus       199 ~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~  278 (346)
T TIGR03547       199 KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNG  278 (346)
T ss_pred             ECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcC
Confidence            3566777766431      34556654433344443333211     1  1222345678888888753           


Q ss_pred             -----------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          280 -----------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       280 -----------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                                 ..+.+||.++.+ ...+..+....  -...+..-+    +++++.|+.+
T Consensus       279 ~~~~~~~~~~~~~~e~yd~~~~~-W~~~~~lp~~~--~~~~~~~~~----~~iyv~GG~~  331 (346)
T TIGR03547       279 KLYAHEGLIKAWSSEVYALDNGK-WSKVGKLPQGL--AYGVSVSWN----NGVLLIGGEN  331 (346)
T ss_pred             CccccCCCCceeEeeEEEecCCc-ccccCCCCCCc--eeeEEEEcC----CEEEEEeccC
Confidence                       146788877542 32333322111  111222333    7788888765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=92.08  E-value=7.8  Score=33.97  Aligned_cols=192  Identities=11%  Similarity=0.005  Sum_probs=89.2

Q ss_pred             eCCeEEEecCC-------CcEEEEEcCCceeeeecc-c-cCc----ceEEEEEeCCeEEEEcCC-----CcEEEEeCCCC
Q 018591          137 YNGLIYSGSWD-------KTLKVWRVADLKCLESIK-A-HDD----AVNGLVASKGIVYSASAD-----GKIKAWGKELG  198 (353)
Q Consensus       137 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~-~-~~~----~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~  198 (353)
                      ....++.|+.+       ..+..||+.+.+-...-. + ...    ....+...+.+++.|+.+     ..+..||+.+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence            33566666643       347788887654322110 0 011    111222344466666654     35778888776


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeee---ccccceeEEEEEEcC
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACE---TKAHEMAVLCVCLVG  270 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~  270 (353)
                      +-.......  .......-.+++. -++++.+.|+.++     .+..||+.+..  |.....   .............++
T Consensus       255 ~W~~l~~~~--~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~~~g  329 (470)
T PLN02193        255 EWKLLTPVE--EGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEVVQG  329 (470)
T ss_pred             EEEEcCcCC--CCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEEECC
Confidence            421111110  0011110012222 3456666666543     46677877652  322211   111111222334567


Q ss_pred             cEEEEecCC----CeEEEEecCCCcceEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCC--------------Ce
Q 018591          271 EFLCSGSAD----KSIGIWKREAFGKLCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLD--------------KS  330 (353)
Q Consensus       271 ~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~d--------------g~  330 (353)
                      ++++.|+.+    ..+.+||+.+.+ ...+....  .......+++ .-+    +++++.|+.+              ..
T Consensus       330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~-~~~----~~iyv~GG~~~~~~~~~~~~~~~~nd  403 (470)
T PLN02193        330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA-AVG----KHIVIFGGEIAMDPLAHVGPGQLTDG  403 (470)
T ss_pred             cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE-EEC----CEEEEECCccCCccccccCccceecc
Confidence            777777755    468899988743 33332211  0111111222 223    6788888853              24


Q ss_pred             EEEEEcCCC
Q 018591          331 LRVWWVSKQ  339 (353)
Q Consensus       331 i~iw~~~~~  339 (353)
                      +.++|+.+.
T Consensus       404 v~~~D~~t~  412 (470)
T PLN02193        404 TFALDTETL  412 (470)
T ss_pred             EEEEEcCcC
Confidence            677777654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.97  E-value=1  Score=37.86  Aligned_cols=169  Identities=12%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             ccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee-EEEEcCCCCeEEeecCCCcEEE
Q 018591          164 IKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN-SVVVSDDGKWVYGGGSDGFVMG  240 (353)
Q Consensus       164 ~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i  240 (353)
                      +......|..+-. +++ .+..-+. .++.++++.+...+..++...-.+.....|+ .+..-..|.-+.+++.||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4344456666666 444 3333332 6788888876552222222111121111111 2222334566888899998888


Q ss_pred             e-eccc-cccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591          241 W-EGNV-EIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       241 ~-d~~~-~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      | |.+. +.+.......++-...++..+.++  .+-+++-+.+|++..+.....+.  .+  .+.--..+.-+++||.  
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL--~~~~~~~~~~~~~Sp~--  368 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LL--FERAYQAPQLVAMSPN--  368 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--ee--hhhhhcCcceeeeCcc--
Confidence            7 4433 223334444444445566666665  45677788899998887554332  11  1122235677899999  


Q ss_pred             CCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          317 GGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       317 ~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                        +.+|++- +.|.++++.+++..+.
T Consensus       369 --~~~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         369 --QAYLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             --cchheee-cCCceEEEEecCCCCC
Confidence              8888876 4568999999887543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.89  E-value=7.2  Score=33.14  Aligned_cols=146  Identities=9%  Similarity=0.016  Sum_probs=64.5

Q ss_pred             CcEEEEEcCCceeeeeccccCc---ceEEEEEe--CCeEEEEc--------------------CCCcEEEEeCCCCCccc
Q 018591          148 KTLKVWRVADLKCLESIKAHDD---AVNGLVAS--KGIVYSAS--------------------ADGKIKAWGKELGKSHC  202 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~---~v~~i~~~--~~~l~~~~--------------------~dg~i~iwd~~~~~~~~  202 (353)
                      |-+.++|-++.+.....+....   .-+.+-+.  .+.+++..                    ...++.+||+.+.+   
T Consensus       157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~---  233 (461)
T PF05694_consen  157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK---  233 (461)
T ss_dssp             -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE---
T ss_pred             CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc---
Confidence            5677888777777666643221   22333332  23455443                    34689999999987   


Q ss_pred             ccceeeeeccC-CceeeEEEEcC--CCCeEEee-cCCCcEEEeec-cccccceeeeeeccc-----------------cc
Q 018591          203 HSLKGILEGHK-DVSLNSVVVSD--DGKWVYGG-GSDGFVMGWEG-NVEIVRWKLACETKA-----------------HE  260 (353)
Q Consensus       203 ~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~-~~~~~~~~~~~~~~~-----------------~~  260 (353)
                        +.+.+.-.. ......+.|..  +..+=+++ .-.+.|..|-- ..+.-..+.+.....                 -.
T Consensus       234 --~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P  311 (461)
T PF05694_consen  234 --LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP  311 (461)
T ss_dssp             --EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred             --EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence              566555443 22336677754  34443333 23444554433 333211111111111                 02


Q ss_pred             eeEEE--EEEcCcEEEEec-CCCeEEEEecCCCcceEEecc
Q 018591          261 MAVLC--VCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGA  298 (353)
Q Consensus       261 ~~v~~--~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~  298 (353)
                      .-++.  ++.|.++|.... ..|.|+.||+.....++.+..
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gq  352 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQ  352 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeE
Confidence            23444  445677776554 699999999998877766654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.84  E-value=1.1  Score=23.74  Aligned_cols=29  Identities=14%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             CceEEEEEC---C--cEEEEEeCCCcEEEEeCCC
Q 018591           17 GSVSSLALC---G--EFILSASQGKDIIVWQQPD   45 (353)
Q Consensus        17 ~~v~~~~~~---~--~~l~s~~~dg~v~vwd~~~   45 (353)
                      ++|.++.|+   +  ++|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999997   3  6888888889999999874

It contains a characteristic DLL sequence motif.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.79  E-value=5.8  Score=32.85  Aligned_cols=110  Identities=13%  Similarity=0.053  Sum_probs=0.0

Q ss_pred             CceeeEEEEcCCCCeEEeecCCCcEEEeeccccc--cceeeeeeccccceeEEEEEEcC-----cEEEEecCCC------
Q 018591          214 DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI--VRWKLACETKAHEMAVLCVCLVG-----EFLCSGSADK------  280 (353)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg------  280 (353)
                      ..+ ++|+|.|+++++++-- .|.|++++.....  ..................+++++     .+|.+.....      
T Consensus         2 ~~P-~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    2 NNP-RSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             SSE-EEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCc-eEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC


Q ss_pred             ---eEEEEecCCC-----cceEEeccccC---CCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591          281 ---SIGIWKREAF-----GKLCRVGAITG---HEGPVKCLQASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       281 ---~i~iw~~~~~-----~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~l~s~~~dg  329 (353)
                         .|.-|.....     .....+..+..   ....-..|.|.||    |.+.++.+..+
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD----G~LYvs~G~~~  135 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD----GKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TT----SEEEEEEB-TT
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCC----CcEEEEeCCCC

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.66  E-value=8.7  Score=37.27  Aligned_cols=144  Identities=18%  Similarity=0.246  Sum_probs=85.9

Q ss_pred             EeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----C------CEEEEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591           32 ASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----G------NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        32 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      .+-|+.+.+|+.+++.....+.+-+..|..+..-    |      ++++..+.--.|.++-+.-.+.......  +..  
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~--f~~--  170 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI--FNT--  170 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc--ccc--
Confidence            3467899999999988888888777777776653    1      2334333444677766543321000000  000  


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEc--CCc---e-e--------------
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRV--ADL---K-C--------------  160 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~--~~~---~-~--------------  160 (353)
                                         .-.+......|+|+.... +.++-++.||.|+-.-.  ..+   + +              
T Consensus       171 -------------------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  171 -------------------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             -------------------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence                               000012345788888555 78888888885542211  111   1 1              


Q ss_pred             --eeecc-ccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCC
Q 018591          161 --LESIK-AHDDAVNGLVA--SKGIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       161 --~~~~~-~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~  198 (353)
                        +-.+. .+..+|..+..  +.+.+.+-+..|+|.+||+...
T Consensus       232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence              11122 45779999999  4458889999999999999763

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.66  E-value=3  Score=35.40  Aligned_cols=71  Identities=13%  Similarity=-0.041  Sum_probs=47.4

Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE----EcC----------------c-EEEE
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC----LVG----------------E-FLCS  275 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~----~~~----------------~-~l~~  275 (353)
                      +.+++.+|++++.++...-|.|.++|+..+    ......++....-+.+-    ...                . +++-
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~----~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARG----IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCC----hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            488999999999999988899999999887    33333333332222211    111                1 2334


Q ss_pred             ecCCCeEEEEecCCCc
Q 018591          276 GSADKSIGIWKREAFG  291 (353)
Q Consensus       276 ~~~dg~i~iw~~~~~~  291 (353)
                      +-.-|.|.||.++++.
T Consensus       386 aprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  386 APRRGILEVWSMRQGP  401 (415)
T ss_pred             eccCCeEEEEecCCCC
Confidence            5567889999988776

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=91.51  E-value=0.7  Score=21.63  Aligned_cols=25  Identities=8%  Similarity=0.260  Sum_probs=18.5

Q ss_pred             ceEEEEECCcEEEEEeCCCcEEEEe
Q 018591           18 SVSSLALCGEFILSASQGKDIIVWQ   42 (353)
Q Consensus        18 ~v~~~~~~~~~l~s~~~dg~v~vwd   42 (353)
                      .|.+++....+++.+.+-+.+|+|.
T Consensus         3 ~i~aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccCCEEEEEeCCCeEEecC
Confidence            5677777777777777777777763

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.43  E-value=8  Score=32.75  Aligned_cols=40  Identities=13%  Similarity=0.007  Sum_probs=22.5

Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD  279 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d  279 (353)
                      +.+||..+.  .|.....+........++..++.+++.|+..
T Consensus       314 ~e~yd~~~~--~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNG--KWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCC--cccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            457888765  3333333333233334566678888888754

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.20  E-value=3.6  Score=28.37  Aligned_cols=65  Identities=9%  Similarity=0.141  Sum_probs=42.6

Q ss_pred             EEEEC--CcEEEEEeCCCcEEEEeCCCce--------eeEEeccCceeeEEEEEe-------CCEEEEecCCCcEEEEEc
Q 018591           21 SLALC--GEFILSASQGKDIIVWQQPDLR--------MFTKFGHGDGSVKAVVTV-------GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus        21 ~~~~~--~~~l~s~~~dg~v~vwd~~~~~--------~~~~~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~~w~~   83 (353)
                      .-.|+  ..-|+.++.-|+|.|.+.....        .+..+.- ...|++|+--       .+.|+.|+. ..+..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            34565  4478888888999999865332        3333333 4466666542       456777766 48999999


Q ss_pred             ccCc
Q 018591           84 SRSS   87 (353)
Q Consensus        84 ~~~~   87 (353)
                      +...
T Consensus        81 ~~N~   84 (136)
T PF14781_consen   81 ENNS   84 (136)
T ss_pred             ccCc
Confidence            8876

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.06  E-value=8.6  Score=32.45  Aligned_cols=198  Identities=15%  Similarity=0.154  Sum_probs=101.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCc--eeeEEE-EEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGD--GSVKAV-VTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~-~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      +..++.+..||.|.-.|.++++.+.....-.  ..+..- ......++.++.+|.+...|.++++..-.....       
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~-------  140 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVG-------  140 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecC-------
Confidence            5566666888989989998888665433221  122221 122566888899997777777655521111110       


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCc---ceE-EEEEeC
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDD---AVN-GLVASK  178 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~v~-~i~~~~  178 (353)
                                             +..............+..++.++.+.-.|..+++..........   .+. ......
T Consensus       141 -----------------------~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~  197 (370)
T COG1520         141 -----------------------GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS  197 (370)
T ss_pred             -----------------------CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec
Confidence                                   00000001111124555555778888888888887666433211   111 111345


Q ss_pred             CeEEEEcC--CCcEEEEeCCCCCcccccceeeeeccCCc----eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceee
Q 018591          179 GIVYSASA--DGKIKAWGKELGKSHCHSLKGILEGHKDV----SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       179 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  252 (353)
                      +.++.+..  ++.+.-.|..++............+....    .+..-...-+ ..+..++.++.+...|..+++..|+.
T Consensus       198 ~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~~  276 (370)
T COG1520         198 GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSF  276 (370)
T ss_pred             ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEEE
Confidence            56666665  66677778877762221111111111100    0000000011 22456667787888888888666655


Q ss_pred             ee
Q 018591          253 AC  254 (353)
Q Consensus       253 ~~  254 (353)
                      ..
T Consensus       277 ~~  278 (370)
T COG1520         277 PA  278 (370)
T ss_pred             ec
Confidence            44

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=91.00  E-value=8.3  Score=32.16  Aligned_cols=42  Identities=12%  Similarity=0.128  Sum_probs=22.6

Q ss_pred             CcEEEeeccccccceeeeeeccc-cceeEEEEEEcCcEEEEecCC
Q 018591          236 GFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGEFLCSGSAD  279 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d  279 (353)
                      ..+.+||..++  .|.....+.. ..........++++.+.|+.+
T Consensus       168 ~~v~~YDp~t~--~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTN--QWRNLGENPFLGTAGSAIVHKGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCC--ceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence            45788888775  3443333321 122223344567777777753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.65  E-value=14  Score=34.24  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=27.7

Q ss_pred             ecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCC
Q 018591          126 EHADSISCLTVYN-----GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus       126 ~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~  157 (353)
                      .+...|..+.|+|     ..|++-..|+.+++||+..
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            4567899999998     6889999999999999965

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.48  E-value=9.5  Score=32.00  Aligned_cols=192  Identities=20%  Similarity=0.152  Sum_probs=104.4

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE------eCC--eEEEEc-CC---CcEEEEeCCCCCcccccce
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA------SKG--IVYSAS-AD---GKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~------~~~--~l~~~~-~d---g~i~iwd~~~~~~~~~~~~  206 (353)
                      .+++....++-+.+||+. ++.++.+.  .+.++.+..      .+.  -|+.++ .+   .+|++|.+.....    .+
T Consensus        69 SlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g----~L  141 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG----EL  141 (381)
T ss_dssp             -EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT----EE
T ss_pred             ceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC----cc
Confidence            678888888999999985 66666664  344555444      222  233333 32   4699997764221    11


Q ss_pred             eeee-------ccCCceeeEEEE--cC-CCC-eEEeecCCCcEEEeecccc---ccceeeeeeccccceeEEEEEEc--C
Q 018591          207 GILE-------GHKDVSLNSVVV--SD-DGK-WVYGGGSDGFVMGWEGNVE---IVRWKLACETKAHEMAVLCVCLV--G  270 (353)
Q Consensus       207 ~~~~-------~~~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~v~~~~~~--~  270 (353)
                      ..+.       .....+ ..+++  +| ++. ++++...+|.+..|.+...   ....++...+.... .+-.+..|  .
T Consensus       142 ~~v~~~~~p~~~~~~e~-yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVDDe~  219 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEP-YGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVDDET  219 (381)
T ss_dssp             EE-CBTTC-EE-SSSSE-EEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEETTT
T ss_pred             eEcCCCCcccccccccc-eeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEeccc
Confidence            1111       111122 45554  44 344 6677888999998887632   22334555555433 34444444  5


Q ss_pred             cEEEEecCCCeEEEEecCCCc--ceEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          271 EFLCSGSADKSIGIWKREAFG--KLCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      ..|+.+-++--|.-|+.+...  ....+....  +....|-.|+.-....+.|.+|+|.=.+++..||+.+..
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            688889998888888776332  222332222  244567788876543333567777777889999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.48  E-value=11  Score=32.59  Aligned_cols=29  Identities=24%  Similarity=0.376  Sum_probs=24.3

Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                      |..++..+..+.+++...+|.|.+|++..
T Consensus       192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            47888888889999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>smart00564 PQQ beta-propeller repeat

Probab=90.35  E-value=1.2  Score=21.79  Aligned_cols=27  Identities=4%  Similarity=0.060  Sum_probs=21.1

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEe
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKF   52 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~   52 (353)
                      +..++.++.+|.+...|..+|+.+..+
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            446777888899999999888877653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.61  E-value=9.2  Score=30.51  Aligned_cols=163  Identities=7%  Similarity=-0.007  Sum_probs=96.8

Q ss_pred             ecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCc
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      +-...+.++.|+|  +.|++......-.++=..+|+.+.++.-. -...-.|.+ .++ +.++--.++.+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            4555699999999  67777776676667766778888877432 122345666 444 444445577787776655431


Q ss_pred             cc--cc---ceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec-cc-----cceeEEEEEEc
Q 018591          201 HC--HS---LKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET-KA-----HEMAVLCVCLV  269 (353)
Q Consensus       201 ~~--~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~  269 (353)
                      ..  ..   .+......... ...++|+|..+.|+.+-+-.-+.||............... ..     .-..+..+.++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~G-fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKG-FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             EEeccceEEeccccCCCCcC-ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            10  00   11111111222 3789999999999888888888888776442111111000 00     11234455555


Q ss_pred             ---CcEEEEecCCCeEEEEecCC
Q 018591          270 ---GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       270 ---~~~l~~~~~dg~i~iw~~~~  289 (353)
                         +.+|+-+.+++.+.-.|...
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCC
Confidence               66788888888888887654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.54  E-value=12  Score=31.87  Aligned_cols=154  Identities=11%  Similarity=0.048  Sum_probs=87.8

Q ss_pred             CCceeeEEeccCce------eeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591           44 PDLRMFTKFGHGDG------SVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT  116 (353)
Q Consensus        44 ~~~~~~~~~~~~~~------~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (353)
                      .+|.....+-+|..      .-+.+.|+ .+..+.+-..|.+.-|-.............                     
T Consensus         4 gsGalyhelihhPslfcnipesngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfd---------------------   62 (657)
T KOG2377|consen    4 GSGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFD---------------------   62 (657)
T ss_pred             CCcceEEEEecCchhhccCCcccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceee---------------------
Confidence            34555555555532      33456666 444444445566677766554322111111                     


Q ss_pred             cccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee----eccccCcceEEEEEeCC-eEEEEcCCCc
Q 018591          117 RRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE----SIKAHDDAVNGLVASKG-IVYSASADGK  189 (353)
Q Consensus       117 ~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~-~l~~~~~dg~  189 (353)
                              ....++|.++.|++  +.+++--.+++|.+.+....+...    +-+.....|....|.++ .++..... .
T Consensus        63 --------m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~-G  133 (657)
T KOG2377|consen   63 --------MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQ-G  133 (657)
T ss_pred             --------ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecC-C
Confidence                    13556999999999  788888899999999974322222    22333456888899444 45544443 3


Q ss_pred             EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee
Q 018591          190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  232 (353)
                      +-+|.....+    ...+..+.+.-.+ +-..|.++.+.+..+
T Consensus       134 ~e~y~v~pek----rslRlVks~~~nv-nWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  134 IEFYQVLPEK----RSLRLVKSHNLNV-NWYMYCPETAVILLS  171 (657)
T ss_pred             eEEEEEchhh----hhhhhhhhcccCc-cEEEEccccceEeee
Confidence            5666554333    1334444555544 777888877654443

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=89.47  E-value=1.4  Score=22.84  Aligned_cols=25  Identities=12%  Similarity=0.324  Sum_probs=18.3

Q ss_pred             EEEEeCCEEEEecCCCcEEEEEccc
Q 018591           61 AVVTVGNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        61 ~~~~~~~~l~s~~~dg~i~~w~~~~   85 (353)
                      ++...+..++.++.||.+...|.++
T Consensus        16 ~~~v~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   16 SPAVAGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             --EECTSEEEEE-TTSEEEEEETT-
T ss_pred             CCEEECCEEEEEcCCCEEEEEeCCC
Confidence            3466688999999999999998753

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.40  E-value=0.059  Score=45.11  Aligned_cols=135  Identities=9%  Similarity=0.043  Sum_probs=86.2

Q ss_pred             EEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591          134 LTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  208 (353)
                      ..|.+  ..++.++.+..+..||- .++...... .++....++|+  .+ .++.+-..+.+.+||+.+..      ...
T Consensus        40 ~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey------tqq  111 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY------TQQ  111 (615)
T ss_pred             eeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh------HHH
Confidence            34444  45888888888999984 444444442 24555667772  22 56667778999999998765      122


Q ss_pred             eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCC
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADK  280 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg  280 (353)
                      ++......-.-+.|++....++.+...|.+.+++....    +.......|...++++++. .++.+.++.|.
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd~vil~dcd~  180 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLEDYVILCDCDN  180 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccceeeecCcHH
Confidence            22111111134788998899999999999999998776    3333333467777777776 45555555543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.31  E-value=12  Score=31.52  Aligned_cols=101  Identities=14%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccc----cceeeeeeccc------cceeEEEEEEcCcEEEEecC---------
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEI----VRWKLACETKA------HEMAVLCVCLVGEFLCSGSA---------  278 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~------~~~~v~~~~~~~~~l~~~~~---------  278 (353)
                      ..+++.+++  |+++......++.|.....    ....+...+..      |...-..+.++|.+.++-+.         
T Consensus        75 ~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~  152 (367)
T TIGR02604        75 TGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP  152 (367)
T ss_pred             cceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence            789999988  4444444433343443211    11112222221      22334555567776554441         


Q ss_pred             ----------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          279 ----------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       279 ----------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                                .|.|.-++....+ ...+  -.++ .....++|+|+    |+++++-..+
T Consensus       153 ~~~~~~~~~~~g~i~r~~pdg~~-~e~~--a~G~-rnp~Gl~~d~~----G~l~~tdn~~  204 (367)
T TIGR02604       153 GTSDESRQGLGGGLFRYNPDGGK-LRVV--AHGF-QNPYGHSVDSW----GDVFFCDNDD  204 (367)
T ss_pred             CCccCcccccCceEEEEecCCCe-EEEE--ecCc-CCCccceECCC----CCEEEEccCC
Confidence                      1445555555432 2121  1232 34578999998    8887765543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.28  E-value=7.9  Score=29.32  Aligned_cols=152  Identities=9%  Similarity=0.036  Sum_probs=81.0

Q ss_pred             EEEEeC-CeEEEecCCCcEEEEEcCC--ceeeeeccccCcceEEEEE--eCCeEEEEcCCC------cEEEE-eCCCCCc
Q 018591          133 CLTVYN-GLIYSGSWDKTLKVWRVAD--LKCLESIKAHDDAVNGLVA--SKGIVYSASADG------KIKAW-GKELGKS  200 (353)
Q Consensus       133 ~~~~~~-~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg------~i~iw-d~~~~~~  200 (353)
                      .+...+ +.|+.+...+.|.+|++.+  .+...+|.. -+.|..+.+  .++++++--.+.      .+|+| |.+....
T Consensus        22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            344445 6676667778899999883  345556643 478889988  566888764432      45665 2222210


Q ss_pred             ccccc--------------------eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee--eeeecc-
Q 018591          201 HCHSL--------------------KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK--LACETK-  257 (353)
Q Consensus       201 ~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~-  257 (353)
                      .....                    ....+-.......+++..|...-|+.|+ ++.+.+|.+........  ....+. 
T Consensus       101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~  179 (215)
T PF14761_consen  101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFER  179 (215)
T ss_pred             cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechh
Confidence            00001                    1111122222237888888544455555 45689998876532110  001111 


Q ss_pred             -----ccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591          258 -----AHEMAVLCVCLVGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       258 -----~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~  287 (353)
                           ........++..+.++|..+. -.++++.+
T Consensus       180 ~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  180 SLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             hhhheecCceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence                 112234555666778877654 44666654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.10  E-value=9.9  Score=30.21  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=58.8

Q ss_pred             EEEEeC---CeEEEecCCCc-EEEEEcCCceeeeeccccCcc--eEEEEE-eCCeEEEEcC------CCcEEEEeCCCCC
Q 018591          133 CLTVYN---GLIYSGSWDKT-LKVWRVADLKCLESIKAHDDA--VNGLVA-SKGIVYSASA------DGKIKAWGKELGK  199 (353)
Q Consensus       133 ~~~~~~---~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~--v~~i~~-~~~~l~~~~~------dg~i~iwd~~~~~  199 (353)
                      .|.++|   .-++.+-.-|+ ..++|....+....+...++.  .-.=.| +++.++-+++      -|.|-+||.+.+-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            567777   55666666665 567888776655554322111  111233 3343333332      3679999998553


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeec
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                          .....+..|.-.+ ..+.+.+||+.++.+.
T Consensus       152 ----qrvgE~~t~GiGp-Hev~lm~DGrtlvvan  180 (366)
T COG3490         152 ----QRVGEFSTHGIGP-HEVTLMADGRTLVVAN  180 (366)
T ss_pred             ----ceecccccCCcCc-ceeEEecCCcEEEEeC
Confidence                3455677777777 8899999999988764

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.69  E-value=11  Score=30.24  Aligned_cols=116  Identities=13%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec------CCCcEEEeeccccccceeeeee-c-ccc
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG------SDGFVMGWEGNVEIVRWKLACE-T-KAH  259 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-~-~~~  259 (353)
                      ..|++||..+.+     -...-.+ -...|..+.|..+.+.++.|.      ....+..||.....  +..... . ..-
T Consensus        16 ~~lC~yd~~~~q-----W~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~i   87 (281)
T PF12768_consen   16 PGLCLYDTDNSQ-----WSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSI   87 (281)
T ss_pred             CEEEEEECCCCE-----eecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccC
Confidence            469999988775     2222222 334469999987766776664      45678889988762  222211 1 122


Q ss_pred             ceeEEEEEE---cC-cEEEEec-CCC--eEEEEecCCCcceEEecc-ccCCCcCeEEEEeecC
Q 018591          260 EMAVLCVCL---VG-EFLCSGS-ADK--SIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPN  314 (353)
Q Consensus       260 ~~~v~~~~~---~~-~~l~~~~-~dg--~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~  314 (353)
                      .+++..+.+   ++ ++.++|. .+|  .|..||=....   .+.. .......|..+.+-|-
T Consensus        88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~---~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS---SIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE---eccccccCCCCEEEEEEEEec
Confidence            456666666   43 3444443 333  45566543332   3333 2223445666665554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.36  E-value=6.9  Score=28.75  Aligned_cols=36  Identities=19%  Similarity=0.152  Sum_probs=28.3

Q ss_pred             cCeEEEEeecCC--CCCCeEEEEccCCCeEEEEEcCCC
Q 018591          304 GPVKCLQASPNA--VGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       304 ~~v~~~~~~~~~--~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      ..|.+++|||..  +..+.+|++.+.+|.|.||.-...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            479999999941  122578999999999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.35  E-value=9.1  Score=28.84  Aligned_cols=174  Identities=10%  Similarity=0.004  Sum_probs=84.8

Q ss_pred             eEEEecC--CCcEEEEEcCCceeeeeccccCcceE--EEEEeCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          140 LIYSGSW--DKTLKVWRVADLKCLESIKAHDDAVN--GLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       140 ~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~--~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      ++.+.+.  ...|+.||+.+++.+..-.-....+.  .+.-.++ .....-.+|.-..+|.++-+     ....+.-...
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-----~lg~~~y~Ge  132 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-----ELGRFSYEGE  132 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-----hhcccccCCc
Confidence            4444443  34699999998887655432211111  1111222 33334457778888888766     3333332222


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCeEEEEecCCCcc
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      .  ..++  .|++.|+.++...+++.-|.++-....+......+.+ .....+.+ +|...|-.-.+..|...+.++++.
T Consensus       133 G--WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         133 G--WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             c--eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcE
Confidence            1  3333  4555677776666777777665432222222222211 11122222 244333333333344444444431


Q ss_pred             e---------EEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          293 L---------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       293 ~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      .         ..+..-..|....+.+++.|.   .++++++|
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~---~~r~~iTG  247 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQ---QDRFLITG  247 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCc---CCeEEEec
Confidence            1         112222335567889999998   14677776

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=87.98  E-value=6  Score=31.00  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             ecCCceEEEEEeC---------CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE----e--CCeEEEEcCCCcE
Q 018591          126 EHADSISCLTVYN---------GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA----S--KGIVYSASADGKI  190 (353)
Q Consensus       126 ~~~~~i~~~~~~~---------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~----~--~~~l~~~~~dg~i  190 (353)
                      .+...|+||+.-.         ..|+.|+++|.|.+.|......+.+++-..-++ .+..    .  +..++.++.||.|
T Consensus       174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~i  252 (257)
T PF14779_consen  174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKI  252 (257)
T ss_pred             ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEE
Confidence            4567788888643         689999999999999998877777766544444 3322    2  2378899999988


Q ss_pred             EEE
Q 018591          191 KAW  193 (353)
Q Consensus       191 ~iw  193 (353)
                      ++.
T Consensus       253 y~i  255 (257)
T PF14779_consen  253 YTI  255 (257)
T ss_pred             EEE
Confidence            764

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.84  E-value=16  Score=35.39  Aligned_cols=67  Identities=12%  Similarity=0.053  Sum_probs=39.7

Q ss_pred             cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      .++.+..+ .++.++.+...+.+.+|+.....     ....+...      ....++++..++++..||.+..||...+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  199 YESLQVLYYSPTKILIGFNRGLVVIKDRASKY-----VQSAYLPN------GQLESRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             cccceeeeecCCCcceeeeeeeeeehhccccc-----chhhcccc------cccCccCCceEEEEEecCCEEeeecCCC
Confidence            34444444 44445555555666666554332     11111111      1112778999999999999999999886

>PF01011 PQQ: PQQ enzyme repeat family

Probab=87.29  E-value=1.8  Score=22.21  Aligned_cols=27  Identities=22%  Similarity=0.186  Sum_probs=22.2

Q ss_pred             eEEEecCCCcEEEEEcCCceeeeeccc
Q 018591          140 LIYSGSWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus       140 ~l~~~~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                      .++.++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            466778999999999999998887753

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>smart00564 PQQ beta-propeller repeat

Probab=87.15  E-value=2.3  Score=20.68  Aligned_cols=26  Identities=31%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeec
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      +.++.++.+|.+..+|.++++.+..+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            46777888888888888887776543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.43  E-value=15  Score=29.13  Aligned_cols=147  Identities=14%  Similarity=-0.070  Sum_probs=75.8

Q ss_pred             ceEEEEEeC--CeEEEEc---CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee-c
Q 018591          170 AVNGLVASK--GIVYSAS---ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE-G  243 (353)
Q Consensus       170 ~v~~i~~~~--~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~  243 (353)
                      .+.+.++++  +.++...   ....++++......      .....+.   .+..-.|++++...+....+...+++. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~------~~~~~g~---~l~~PS~d~~g~~W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV------RPVLTGG---SLTRPSWDPDGWVWTVDDGSGGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc------eeeccCC---ccccccccCCCCEEEEEcCCCceEEEEec
Confidence            566777732  3444333   33445555544332      2222222   247788999987777767666666664 2


Q ss_pred             cccccceeeeeecccc-ceeEEEEEEcCcEEEEec---CCCeEEEEecCCCcc--eE----EeccccCCCcCeEEEEeec
Q 018591          244 NVEIVRWKLACETKAH-EMAVLCVCLVGEFLCSGS---ADKSIGIWKREAFGK--LC----RVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       244 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~--~~----~~~~~~~h~~~v~~~~~~~  313 (353)
                      ..+............. ......++++|..++.-.   .++.|.+=-+.....  ..    .+.........++++.|.+
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            2222111111111111 233345556787766544   457777765432211  11    1111223346799999999


Q ss_pred             CCCCCCeEEEEccCCC
Q 018591          314 NAVGGGFLLYSGSLDK  329 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg  329 (353)
                      +    +.+++.+...+
T Consensus       176 ~----~~L~V~~~~~~  187 (253)
T PF10647_consen  176 D----STLVVLGRSAG  187 (253)
T ss_pred             C----CEEEEEeCCCC
Confidence            8    77766665544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.15  E-value=4.4  Score=36.36  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             cCcEEEEecCCCeEEEEecCCCcc
Q 018591          269 VGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       269 ~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      +..++++-+.|+.+|+||+.+++.
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeE
Confidence            467999999999999999999874

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=86.10  E-value=20  Score=30.32  Aligned_cols=148  Identities=20%  Similarity=0.243  Sum_probs=80.5

Q ss_pred             CCeEEEecCCCcEEEEEcCCceeeeeccccC-cceEE-EEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC--
Q 018591          138 NGLIYSGSWDKTLKVWRVADLKCLESIKAHD-DAVNG-LVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK--  213 (353)
Q Consensus       138 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~-i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--  213 (353)
                      ...++.++.++.++.+|.++++.+...+... ..+.. ....++.++..+.++.+.-.|..++..     .-......  
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~-----~W~~~~~~~~  185 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTL-----KWTYETPAPL  185 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcE-----EEEEecCCcc
Confidence            3678999999999999988899888876554 11111 112445666666788998888888762     22211111  


Q ss_pred             C-ceeeEEEEcCCCCeEEeecC--CCcEEEeeccccccceeeeeeccccceeE--------EEEEEcCcEEEEecCCCeE
Q 018591          214 D-VSLNSVVVSDDGKWVYGGGS--DGFVMGWEGNVEIVRWKLACETKAHEMAV--------LCVCLVGEFLCSGSADKSI  282 (353)
Q Consensus       214 ~-~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~l~~~~~dg~i  282 (353)
                      . ....... .. ...++.+..  ++.+.-.|...+...+............+        ..+.. +.-+..++.++.+
T Consensus       186 ~~~~~~~~~-~~-~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~  262 (370)
T COG1520         186 SLSIYGSPA-IA-SGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKL  262 (370)
T ss_pred             ccccccCce-ee-cceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeE
Confidence            0 0001111 12 233444444  55677777777655554322111111111        11111 3334566777778


Q ss_pred             EEEecCCCcce
Q 018591          283 GIWKREAFGKL  293 (353)
Q Consensus       283 ~iw~~~~~~~~  293 (353)
                      .-.|..+++..
T Consensus       263 ~~l~~~~G~~~  273 (370)
T COG1520         263 LCLDADTGELI  273 (370)
T ss_pred             EEEEcCCCceE
Confidence            88888887743

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.05  E-value=31  Score=33.62  Aligned_cols=26  Identities=31%  Similarity=0.258  Sum_probs=23.4

Q ss_pred             ecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      +++    +..++++..||.+.+||+..++.
T Consensus       243 ~~~----~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  243 SRD----GSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccC----CceEEEEEecCCEEeeecCCCce
Confidence            666    89999999999999999998755

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.66  E-value=9.7  Score=26.38  Aligned_cols=104  Identities=12%  Similarity=0.071  Sum_probs=56.4

Q ss_pred             eEEEEcCCCcEEEEeCCCCCcc---cccceeeeeccCCceeeEEEEcC-----CCCeEEeecCCCcEEEeecccccccee
Q 018591          180 IVYSASADGKIKAWGKELGKSH---CHSLKGILEGHKDVSLNSVVVSD-----DGKWVYGGGSDGFVMGWEGNVEIVRWK  251 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~  251 (353)
                      .|++++.-|+|.+++.......   .......+...+.  |++++-.+     +...|+.|+.. .+..||+..+...+ 
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~--italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~F-   87 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQE--ITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLF-   87 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCc--eEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhh-
Confidence            6777778888999887644311   1112233333322  36665443     34567776654 59999998874222 


Q ss_pred             eeeeccccceeEEEEEE-----cCcEEEEecCCCeEEEEecCCCc
Q 018591          252 LACETKAHEMAVLCVCL-----VGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       252 ~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                       ....   ...+.++..     ...-++..+.+..|.-||.+..+
T Consensus        88 -yke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   88 -YKEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             -hhhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence             1122   233333333     23344445556778888876554

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.21  E-value=23  Score=30.27  Aligned_cols=110  Identities=8%  Similarity=-0.078  Sum_probs=60.5

Q ss_pred             eeeEEEEcCCCCeEEeecCCCcEEEeecccccccee--eeeecc--ccceeEEEEEEc-CcEEEEecCCCeEEEEecCCC
Q 018591          216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK--LACETK--AHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~--~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .+..+.+.+++..++++ ..|.+. +....+.. +.  ......  .....+..+.+. ...+++++.+|.+.... ..+
T Consensus       282 ~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~-~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G  357 (398)
T PLN00033        282 RIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLT-EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGG  357 (398)
T ss_pred             ceeeeeEcCCCCEEEEe-CCceEE-EecCCCCc-ccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCC
Confidence            35889999998877766 445443 33333210 00  011111  112346666553 45566667778666654 555


Q ss_pred             cceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          291 GKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       291 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      +.......-..-....+.+.|.++    ++-+++ +.+|.|.-|
T Consensus       358 ~tW~~~~~~~~~~~~ly~v~f~~~----~~g~~~-G~~G~il~~  396 (398)
T PLN00033        358 KSWKRDKGADNIAANLYSVKFFDD----KKGFVL-GNDGVLLRY  396 (398)
T ss_pred             cceeEccccCCCCcceeEEEEcCC----CceEEE-eCCcEEEEe
Confidence            544444322334567889999876    455554 468877654

>PF01011 PQQ: PQQ enzyme repeat family

Probab=85.03  E-value=3.1  Score=21.30  Aligned_cols=27  Identities=7%  Similarity=0.074  Sum_probs=21.7

Q ss_pred             EEEEEeCCCcEEEEeCCCceeeEEecc
Q 018591           28 FILSASQGKDIIVWQQPDLRMFTKFGH   54 (353)
Q Consensus        28 ~l~s~~~dg~v~vwd~~~~~~~~~~~~   54 (353)
                      .++.++.||.|.-.|..+|+.+..+..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            355668899999999999998887754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.19  E-value=28  Score=30.48  Aligned_cols=25  Identities=0%  Similarity=-0.207  Sum_probs=15.8

Q ss_pred             ceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591          130 SISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      .|..+..++  ..++-.+.+|.+.++=
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEc
Confidence            455566666  6667777777665543

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=83.84  E-value=21  Score=33.15  Aligned_cols=147  Identities=14%  Similarity=0.143  Sum_probs=82.3

Q ss_pred             CeEEEecCCCcEEEEEcCCcee---eee-ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          139 GLIYSGSWDKTLKVWRVADLKC---LES-IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~---~~~-~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      ..+..|+.++.+.++.-..+..   ... .......+.++.+..+.+..|.-||++-.+--.........+...+.... 
T Consensus       548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~-  626 (925)
T KOG3522|consen  548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGS-  626 (925)
T ss_pred             CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCC-
Confidence            5778899999999997652221   111 22234567777777777777777887766533222100000111111112 


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-eEEEEecCCC
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-SIGIWKREAF  290 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~iw~~~~~  290 (353)
                      .++.+.++..|   ++.++.+|.|.++...+....+.... ...|...|+++...+.-+..+-..| .+++++.++.
T Consensus       627 lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~lea-hqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl  699 (925)
T KOG3522|consen  627 LPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEA-HQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETL  699 (925)
T ss_pred             ccccchhhhhc---eeeeecCCceEEEechhccccchhHH-HHhhcceEEEEEeeCCceEEEEcCCCEEEEeccccc
Confidence            22366666655   66778899999999887644433322 2334567777777655444433333 4555555443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=83.77  E-value=36  Score=31.37  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=44.1

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~   84 (353)
                      ..-++++.-+  ++-++.++.||+|+++++......+.... ..+-..+.|.+.-|+++..|..+.-|.-+
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhgl~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHGLVTATSDRRALAWKED   83 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccceEEEeccchhheeecc
Confidence            3456666665  78999999999999999866554322221 12233445555567777777777777644

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=83.57  E-value=26  Score=29.60  Aligned_cols=103  Identities=13%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             eEEEEcCCCCeEEeec-----------CCC-cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEE
Q 018591          218 NSVVVSDDGKWVYGGG-----------SDG-FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIG  283 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  283 (353)
                      ..++|.++|+++++-.           ..+ .|.+++-..+.........+.........+.+  ++  |+++......+
T Consensus        17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~   94 (367)
T TIGR02604        17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILF   94 (367)
T ss_pred             ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEE
Confidence            7889999998777643           223 67777654332211111111111222234443  45  44444444333


Q ss_pred             EEecCCC-----cceEEeccccC----CCcCeEEEEeecCCCCCCeEEEEcc
Q 018591          284 IWKREAF-----GKLCRVGAITG----HEGPVKCLQASPNAVGGGFLLYSGS  326 (353)
Q Consensus       284 iw~~~~~-----~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~l~s~~  326 (353)
                      +.|....     +....+..+..    +......+.|.||    |.+.++-+
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD----G~LYv~~G  142 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD----GWLYFNHG  142 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC----CCEEEecc
Confidence            4454321     11112222322    2345788999999    87766655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical

Probab=83.12  E-value=5.2  Score=21.19  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=27.8

Q ss_pred             eEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591          262 AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG  297 (353)
Q Consensus       262 ~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  297 (353)
                      ....+...|+++..+..++-+.|.|+.+...+..+.
T Consensus         3 ~a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~~v~   38 (42)
T PF08309_consen    3 DARDVAVSGNYAYVADGNNGLVIVDISNPSNPVLVG   38 (42)
T ss_pred             eEEEEEEECCEEEEEeCCCCEEEEECCCCCCCEEEE
Confidence            345667778998888877789999999887665554

The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=82.54  E-value=21  Score=27.91  Aligned_cols=142  Identities=10%  Similarity=0.128  Sum_probs=73.4

Q ss_pred             EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccc--cccceeee-eeccc-ccee
Q 018591          190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNV--EIVRWKLA-CETKA-HEMA  262 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~--~~~~~~~~-~~~~~-~~~~  262 (353)
                      -.+||+.+.+      .+.+....+.-..+-.+-+||+++.+|+..   ..+++++...  ....+... ..+.. .-.+
T Consensus        48 s~~yD~~tn~------~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp  121 (243)
T PF07250_consen   48 SVEYDPNTNT------FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP  121 (243)
T ss_pred             EEEEecCCCc------EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc
Confidence            4678988876      222222233222445677899999988752   3577887644  11111111 11111 1122


Q ss_pred             EEEEEEcCcEEEEecCCC-eEEEEecCCC-cceEEecccc---C--CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          263 VLCVCLVGEFLCSGSADK-SIGIWKREAF-GKLCRVGAIT---G--HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       263 v~~~~~~~~~l~~~~~dg-~i~iw~~~~~-~~~~~~~~~~---~--h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      ....-+||+.|+.|+.+. +..+|.-... .....+..+.   .  ...----+...|+    |++++.+..+.  .|||
T Consensus       122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPd----G~lFi~an~~s--~i~d  195 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPD----GNLFIFANRGS--IIYD  195 (243)
T ss_pred             cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCC----CCEEEEEcCCc--EEEe
Confidence            333445799888888764 3455554221 1111111111   0  0111224566788    99999998765  4567


Q ss_pred             cCCCCCcc
Q 018591          336 VSKQSSTS  343 (353)
Q Consensus       336 ~~~~~~~~  343 (353)
                      ..+.+.+.
T Consensus       196 ~~~n~v~~  203 (243)
T PF07250_consen  196 YKTNTVVR  203 (243)
T ss_pred             CCCCeEEe
Confidence            77665433

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PRK13684 Ycf48-like protein; Provisional

Probab=81.98  E-value=28  Score=28.92  Aligned_cols=114  Identities=11%  Similarity=0.008  Sum_probs=56.9

Q ss_pred             eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcce
Q 018591          216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                      .+..+.+.|++.+++++. .|.+..- ...+...+.....  .....+.++.+  +++.+++| ..|.+++=..+.+...
T Consensus       174 ~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~tW~~~~~--~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQTAWTPHQR--NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             eEEEEEECCCCeEEEEeC-CceEEEE-cCCCCCeEEEeeC--CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            358899999887666554 4544321 1122122333222  22334444444  46665554 5576653234444433


Q ss_pred             EEeccccC-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          294 CRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       294 ~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      ..+..... -...+.++.+.|+    +..++++ .+|.+. .....++
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~----~~~~~~G-~~G~v~-~S~d~G~  290 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTP----GEIWAGG-GNGTLL-VSKDGGK  290 (334)
T ss_pred             ccccCCccccccceeeEEEcCC----CCEEEEc-CCCeEE-EeCCCCC
Confidence            32221111 1235788999987    6655544 567554 3444333

>PRK13616 lipoprotein LpqB; Provisional

Probab=80.76  E-value=45  Score=30.39  Aligned_cols=130  Identities=14%  Similarity=0.004  Sum_probs=62.9

Q ss_pred             CcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEE---EeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591          148 KTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKA---WGKELGKSHCHSLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (353)
                      +.+.+.+++.++...   .....|..+.|+++  .++... +|.|.+   -....+......+ ..+.......+..+.|
T Consensus       430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~-~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP-REVGPGLGDTAVSLDW  504 (591)
T ss_pred             ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc-EEeecccCCccccceE
Confidence            455555655444433   23567999999443  444333 477776   3433333111111 1122222222378999


Q ss_pred             cCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEE
Q 018591          223 SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGI  284 (353)
Q Consensus       223 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  284 (353)
                      .+++.++ ++..++...+|.+.-.-..... ..-......+.+++-....++....+|.+.+
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l  564 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPSTVYVTDARAVLQL  564 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence            9998855 5555554555554332111111 0111124455666655555666666664444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	353
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-11
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-06
2h9l_A	329	Wdr5delta23 Length = 329		5e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-04

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 20/215 (9%)
Query: 121 KRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI 180
           KR+   H  S+ CL     +I +GS D T++VW V   + L ++  H +AV  L  + G+
Sbjct: 166 KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 225
Query: 181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMG 240
           + + S D  I  W  ++      +L+ +L GH+             K++     D  +  
Sbjct: 226 MVTCSKDRSIAVW--DMASPTDITLRRVLVGHR---AAVNVVDFDDKYIVSASGDRTIKV 280
Query: 241 WEGNV-EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
           W  +  E VR         H+  + C+      + SGS+D +I +W  E  G   RV  +
Sbjct: 281 WNTSTCEFVR-----TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC-GACLRV--L 332
Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
            GHE  V+C++     +       SG+ D  ++VW
Sbjct: 333 EGHEELVRCIRFDNKRI------VSGAYDGKIKVW 361

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 116/305 (38%), Gaps = 57/305 (18%)
Query: 53  GHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN 112
           GH D  +  +   GN++ +   D+ ++VW                       GK +    
Sbjct: 116 GHDDHVITCLQFCGNRIVSGSDDNTLKVWSA-------------------VTGKCL---- 152
Query: 113 YVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN 172
                    R  + H   +    + + +I SGS D+TLKVW     +C+ ++  H   V 
Sbjct: 153 ---------RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR 203
Query: 173 GLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGG 232
            +   +  V S S D  ++ W  E G+        +L GH             G+ V  G
Sbjct: 204 CMHLHEKRVVSGSRDATLRVWDIETGQC-----LHVLMGH---VAAVRCVQYDGRRVVSG 255
Query: 233 GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292
             D  V  W+   E     L    + H   V  +   G  + SGS D SI +W  E    
Sbjct: 256 AYDFMVKVWDPETETCLHTL----QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN- 310
Query: 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK----QSSTSDSEEK 348
            C +  +TGH+     ++   N      +L SG+ D ++++W +      Q+    ++ +
Sbjct: 311 -C-IHTLTGHQSLTSGMELKDN------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 362
Query: 349 SIISC 353
           S ++C
Sbjct: 363 SAVTC 367

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 33/185 (17%)
Query: 69  VFTAHQDSRIRVWKVSRSS-------ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK 121
           + T  +D+ + VWK+ + S       E+ + LV   P    Y    ++            
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG----------- 268
Query: 122 RLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG 179
                H  S+  ++ +  ++ SGS+D TL VW VA +KCL  +  H D +   +    + 
Sbjct: 269 -----HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVM 239
              SAS D  I+ W  E G+     L   L+GH              K++    +DG + 
Sbjct: 324 RCISASMDTTIRIWDLENGE-----LMYTLQGH---TALVGLLRLSDKFLVSAAADGSIR 375
Query: 240 GWEGN 244
           GW+ N
Sbjct: 376 GWDAN 380

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 135/331 (40%), Gaps = 50/331 (15%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV--TVGNKVFTAHQDSRIRVWKV 83
           G+ I SAS  K + +W +    + T  GH   SV  V     G  + +A  D  +++W  
Sbjct: 233 GQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVNGVAFRPDGQTIASASDDKTVKLWNR 291
Query: 84  SRSSENVFRLVDTLP--TTKDYLGKFMKQSNYVQTRRHHK--RLWIEHADSISCLTVYNG 139
           +       +L+ TL   ++  +   F      + +    K  +LW  +   +  LT ++ 
Sbjct: 292 N------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 140 ------------LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSAS 185
                        I S S DKT+K+W   + + L+++  H  +V G+  S     + SAS
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Query: 186 ADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNV 245
            D  +K W +         L   L GH              + +     D  V  W  N 
Sbjct: 405 DDKTVKLWNRN------GQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG 457
Query: 246 EIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE 303
           ++++         H  +V  V     G+ + S S DK++ +W R   G+L +   +TGH 
Sbjct: 458 QLLQ-----TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT--LTGHS 508
Query: 304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
             V+ +  SP+    G  + S S DK++++W
Sbjct: 509 SSVRGVAFSPD----GQTIASASDDKTVKLW 535

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 158 LKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXX 215
           +K    ++AH  +V G+  S     + SAS D  +K W +         L   L GH   
Sbjct: 6   VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQTLTGHSSS 59
Query: 216 XXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFL 273
                     G+ +     D  V  W  N ++++         H  +V  V     G+ +
Sbjct: 60  VWGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQ-----TLTGHSSSVRGVAFSPDGQTI 113
Query: 274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV 333
            S S DK++ +W R   G+L +   +TGH   V  +  SP+    G  + S S DK++++
Sbjct: 114 ASASDDKTVKLWNRN--GQLLQT--LTGHSSSVWGVAFSPD----GQTIASASDDKTVKL 165
Query: 334 W 334
           W
Sbjct: 166 W 166

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 33/185 (17%)
Query: 69  VFTAHQDSRIRVWKVSRSS-------ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK 121
           + T  +D+ + VWK+ + S       E+ + LV   P    Y    ++            
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG----------- 268
Query: 122 RLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG 179
                H  S+  ++ +  ++ SGS+D TL VW VA  KCL  +  H D +   +    + 
Sbjct: 269 -----HXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVM 239
              SAS D  I+ W  E G+     L   L+GH              K++    +DG + 
Sbjct: 324 RCISASXDTTIRIWDLENGE-----LXYTLQGH---TALVGLLRLSDKFLVSAAADGSIR 375
Query: 240 GWEGN 244
           GW+ N
Sbjct: 376 GWDAN 380

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 59/242 (24%)
Query: 127 HADSISCLTVYNG--LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN--GLVASKGIVY 182
           H DS+  ++  +   L+ S S D T+K+W     +C+ ++  HD  V+   ++ +   + 
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 183 SASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXGKWV--YGGGSDGFVMG 240
           SAS D  IK W  E+   +C        GH+             +WV       DG ++ 
Sbjct: 209 SASRDKTIKMW--EVQTGYC---VKTFTGHR-------------EWVRMVRPNQDGTLIA 250
Query: 241 WEGNVEIVR-WKLA-----CETKAHEMAVLCVCLV----------------------GEF 272
              N + VR W +A      E + H   V C+                         G F
Sbjct: 251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310
Query: 273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332
           L SGS DK+I +W  +    +C +  + GH+  V+ +       GG F+L S + DK+LR
Sbjct: 311 LLSGSRDKTIKMW--DVSTGMC-LMTLVGHDNWVRGVLFHS---GGKFIL-SCADDKTLR 363
Query: 333 VW 334
           VW
Sbjct: 364 VW 365

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 180 IVYSASADGKIKAWGKELG------KSHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGG 233
           ++ SAS D  IK W  E G      K H  S++ I   H             GK +    
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH------------SGKLLASCS 169
Query: 234 SDGFVMGWEGN-VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK 292
           +D  +  W+    E +R         H ++ + +   G+ + S S DK+I +W  E    
Sbjct: 170 ADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW--EVQTG 224
Query: 293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV-SKQSSTSDSEEKSII 351
            C V   TGH   V+ ++  PN    G L+ S S D+++RVW V +K+      E + ++
Sbjct: 225 YC-VKTFTGHREWVRMVR--PNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 352 SC 353
            C
Sbjct: 280 EC 281

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 31  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 90
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 91  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 118
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 179 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 229
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 286
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 287 EN----IIASAALENDKTIKLW 304

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 36  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 95
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 96  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 123
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 184 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 234
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 291
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 292 EN----IIASAALENDKTIKLW 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 35  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 95  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 122
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 183 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 233
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 290
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 291 E----NIIASAALENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 35  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 95  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 122
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 183 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 233
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 290
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 291 E----NIIASAALENDKTIKLW 308

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 52  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 111
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 112 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 139
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 200 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 250
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 307
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 308 EN----IIASAALENDKTIKLW 325

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 41  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 100
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 101 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 128
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 189 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 239
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 296
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 297 EN----IIASAALENDKTIKLW 314

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 57  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 116
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 117 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 144
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 205 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 255
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 312
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 313 E----NIIASAALENDKTIKLW 330

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 34  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 93
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 94  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 121
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 182 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 232
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 289
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 290 E----NIIASAALENDKTIKLW 307

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 59  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 118
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 119 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 146
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 207 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 257
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 314
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 315 E----NIIASAALENDKTIKLW 332

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 41  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 100
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 101 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 128
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 189 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 239
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 296
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 297 E----NIIASAALENDKTIKLW 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 40  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 99
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 100 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 127
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 188 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 238
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 295
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 296 E----NIIASAALENDKTIKLW 313

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 131/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 41  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 100
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 101 SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 128
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 189 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 239
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 296
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 297 E----NIIASAALENDKTIKLW 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 52/275 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 98  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W    +  + K       H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREA 289
           +    C+        G+++ SGS D  + IW  + 
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 52/275 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 98  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W    +  + K       H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREA 289
           +    C+        G+++ SGS D  + IW  + 
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ ++S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 38  GEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 98  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V   KCL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W    +  + K       H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLW----DYSKGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 293
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 294 EN----IIASAALENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 98  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V    CL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 293
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 294 E----NIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 130/322 (40%), Gaps = 61/322 (18%)
Query: 26  GEFILSASQGKDIIVWQQPDLRMF-TKFGHGDG-SVKAVVTVGNKVFTAHQDSRIRVWKV 83
           GE++ S+S  K I +W   D +   T  GH  G S  A  +  N + +A  D  +++W V
Sbjct: 38  GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 97
Query: 84  SRSSENVFRLVDTLPTTKDYLG--KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLI 141
           S       + + TL    +Y+    F  QSN                           LI
Sbjct: 98  SSG-----KCLKTLKGHSNYVFCCNFNPQSN---------------------------LI 125
Query: 142 YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK 199
            SGS+D+++++W V    CL+++ AH D V+ +  ++   ++ S+S DG  + W    G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 200 SHCHSLKGILEGHKXXXXXXXXXXXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH 259
                LK +++               GK++     D  +  W+ +    + K       H
Sbjct: 186 ----CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNDLKLWDYS----KGKCLKTYTGH 236
Query: 260 EMAVLCV-----CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +    C+        G+++ SGS D  + IW  +       V  + GH   V      P 
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE---IVQKLQGHTDVVISTACHPT 293
Query: 315 AVGGGFLLYSGSL--DKSLRVW 334
                 ++ S +L  DK++++W
Sbjct: 294 E----NIIASAALENDKTIKLW 311

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 120 HKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178
           HK L  +H   + C+   N G   +   +KT +V+RV+D   +  + + D A N    + 
Sbjct: 58  HKSL--DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARL-SDDSAANKDPENL 114
Query: 179 GIVYSASAD-----------GKIKAWGKE-----LGKSHCHSLKGILEGHKXXXXXXXXX 222
               S S+D           GK  A G E     +       +  IL+GH+         
Sbjct: 115 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 174
Query: 223 XXXGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSI 282
               K V G G D  V  W+         L+ E     +AV      G+++ +GS D+++
Sbjct: 175 PSGDKLVSGSG-DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD--GKYIAAGSLDRAV 231
Query: 283 GIWKREAFGKLCRVGAI----TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338
            +W  E    + R+ +     TGH+  V  +  + +    G  + SGSLD+S+++W +  
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQN 287
Query: 339 QSSTSDSEEKSIISC 353
            ++ SDS+  +  +C
Sbjct: 288 ANNKSDSKTPNSGTC 302

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 42/289 (14%)
Query: 66   GNKVFTAHQDSRIRVWKVSRSSEN-----------VFRLVDTLPTTKDYLGKFMKQSNYV 114
            G+   TA  D  IRVW+  +  +N           VF+  +T+    D +    +    +
Sbjct: 901  GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI----RGLQLI 956
Query: 115  QTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174
              +        E   S  CL+ +   +  G  D  +K+  + + +   S   H  AV  +
Sbjct: 957  AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1016
Query: 175  --VASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXG--KWVY 230
               A    + S+S D  I+ W  + G          L+ H+                W +
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLLSWSF 1070
Query: 231  GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF--LCSGSADKSIGIWKRE 288
                DG V  W     ++  ++  +   H+  VL   +  +     S SADK+  IW   
Sbjct: 1071 ----DGTVKVW----NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW--- 1119
Query: 289  AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
            +F  L  +  + GH G V+C   S +    G LL +G  +  +R+W VS
Sbjct: 1120 SFDLLSPLHELKGHNGCVRCSAFSLD----GILLATGDDNGEIRIWNVS 1164

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 42/289 (14%)
Query: 66   GNKVFTAHQDSRIRVWKVSRSSEN-----------VFRLVDTLPTTKDYLGKFMKQSNYV 114
            G+   TA  D  IRVW+  +  +N           VF+  +T+    D +    +    +
Sbjct: 894  GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI----RGLQLI 949
Query: 115  QTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174
              +        E   S  CL+ +   +  G  D  +K+  + + +   S   H  AV  +
Sbjct: 950  AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009
Query: 175  --VASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKXXXXXXXXXXXXG--KWVY 230
               A    + S+S D  I+ W  + G          L+ H+                W +
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLLSWSF 1063
Query: 231  GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF--LCSGSADKSIGIWKRE 288
                DG V  W     ++  ++  +   H+  VL   +  +     S SADK+  IW   
Sbjct: 1064 ----DGTVKVW----NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW--- 1112
Query: 289  AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
            +F  L  +  + GH G V+C   S +    G LL +G  +  +R+W VS
Sbjct: 1113 SFDLLSPLHELKGHNGCVRCSAFSLD----GILLATGDDNGEIRIWNVS 1157

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV---NGLVASKGIV 181
           I H  ++  L+  +G++ SGSWDKT KVW+   L  + +++AH+ +V     +  S+   
Sbjct: 101 IGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKF 158
Query: 182 YSASADGKIKAWGKE 196
            +ASAD  IK W  +
Sbjct: 159 LTASADKTIKLWQND 173

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 27  EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVK---------AVVTVGNKVFTAHQDSR 77
           + ILSAS+ K II+W+    R  T +G    +++          + + G    +   D  
Sbjct: 52  DMILSASRDKTIIMWKLT--RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109
Query: 78  IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN---YVQTRRHHKRLWI--------- 125
           +R+W ++ +     R V     TKD L       N      +R    +LW          
Sbjct: 110 LRLWDLT-TGTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 126 ---EHADSISCL----TVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178
               H++ +SC+       N +I S  WDK +KVW +A+ K   +   H   +N +  S 
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225
Query: 179 --GIVYSASADGKIKAWGKELGKSHCHSLKG 207
              +  S   DG+   W    GK H ++L G
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGK-HLYTLDG 255

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 27  EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVK---------AVVTVGNKVFTAHQDSR 77
           + ILSAS+ K II+W+    R  T +G    +++          + + G    +   D  
Sbjct: 29  DMILSASRDKTIIMWKL--TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 78  IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN---YVQTRRHHKRLWI--------- 125
           +R+W ++ +     R V     TKD L       N      +R    +LW          
Sbjct: 87  LRLWDLT-TGTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 126 ---EHADSISCL----TVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178
               H++ +SC+       N +I S  WDK +KVW +A+ K   +   H   +N +  S 
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202
Query: 179 --GIVYSASADGKIKAWGKELGKSHCHSLKG 207
              +  S   DG+   W    GK H ++L G
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGK-HLYTLDG 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.49
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.48
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.47
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.4
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.37
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.25
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.22
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.19
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.16
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.14
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.13
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.13
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.11
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.11
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.1
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.05
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.05
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.04
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.03
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.02
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.92
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.88
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.82
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.53
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.52
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.48
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.47
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.46
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.43
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.4
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.39
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.36
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.31
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.3
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.27
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.23
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.2
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.18
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.18
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.14
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.12
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.12
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.09
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.04
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.04
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.99
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.97
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.85
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.84
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.83
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.72
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.71
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.65
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.63
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.61
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.58
3ott_A	758	Two-component system sensor histidine kinase; beta	97.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.55
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.42
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.34
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.27
3ott_A	758	Two-component system sensor histidine kinase; beta	97.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.19
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.19
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	97.1
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.88
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.87
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.85
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.56
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.54
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	96.47
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.43
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.33
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.31
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.06
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.66
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	95.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.11
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	94.8
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.08
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.82
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	93.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.8
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	92.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.15
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.91
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	90.77
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.62
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.45
3of7_A	473	Regulator of chromosome condensation; beta-propell	90.13
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.0
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.29
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	83.82
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	83.79
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.96
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	80.94
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	80.14

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-51  Score=343.94  Aligned_cols=281  Identities=22%  Similarity=0.365  Sum_probs=251.7

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~   83 (353)
                      ....+.+|.++|++++|+  +++|++|+.||+|++||+.+++....+.+|...|.+++|+  +++|++|+.||+|++||+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            356789999999999997  7899999999999999999999999999999999999998  789999999999999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceee
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCL  161 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~  161 (353)
                      .+..     .+..                           +.+|...|.+++|+|  +++++|+.|+.|++||+++++++
T Consensus       180 ~~~~-----~~~~---------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          180 QGFE-----CIRT---------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             TSSC-----EEEC---------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCc-----eeEE---------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            8765     3222                           237999999999998  78999999999999999999999


Q ss_pred             eeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC--------------
Q 018591          162 ESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD--------------  225 (353)
Q Consensus       162 ~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------  225 (353)
                      ..+.+|...|.++.+++  ..+++++.|+.|++||+++++     ....+..|...+ .+++|+|+              
T Consensus       228 ~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~  301 (410)
T 1vyh_C          228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHRHVV-ECISWAPESSYSSISEATGSET  301 (410)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEECCSCGGGGGGGCCSCC-
T ss_pred             EEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----eeeEecCCCceE-EEEEEcCcccccchhhhccccc
Confidence            99999999999999943  389999999999999999887     667778888766 99999996              


Q ss_pred             ------CCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEec
Q 018591          226 ------GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVG  297 (353)
Q Consensus       226 ------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~  297 (353)
                            +.+|++|+.|+.|++||++++    .....+.+|...+.++.++  +++|++|+.||.|++||+.+++   .+.
T Consensus       302 ~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---~~~  374 (410)
T 1vyh_C          302 KKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMK  374 (410)
T ss_dssp             ------CCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CCE
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEE
Confidence                  678999999999999999988    5666777888888888775  8899999999999999998877   566


Q ss_pred             cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      .+.+|...|++++|+|+    +.+|++|+.||+|++|+++
T Consensus       375 ~~~~h~~~v~~l~~~~~----~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 TLNAHEHFVTSLDFHKT----APYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECCSSCEEEEEECSS----SSCEEEEETTSEEEEEC--
T ss_pred             EEcCCCCcEEEEEEcCC----CCEEEEEeCCCcEEEEeCC
Confidence            77899999999999999    9999999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.5e-50  Score=331.94  Aligned_cols=287  Identities=21%  Similarity=0.361  Sum_probs=248.6

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      .+...+|++|.++|++++|+  +++|++|+.||+|++||..+++.+..+..|...|.+++|+  +++|++++.|+.+++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            45678899999999999996  8899999999999999999999999999999999999998  8899999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCcee
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      ++.+..... ..                           ...+.+|...|.++.|.+ +.+++++.|+.|++||++++++
T Consensus       125 ~~~~~~~~~-~~---------------------------~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~  176 (340)
T 1got_B          125 NLKTREGNV-RV---------------------------SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ  176 (340)
T ss_dssp             ETTTCSBSC-EE---------------------------EEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEE
T ss_pred             ECccCCCcc-ee---------------------------EEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcE
Confidence            997654110 11                           122348999999999998 8899999999999999999999


Q ss_pred             eeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591          161 LESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV  238 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  238 (353)
                      +..+.+|...|.+++|+++  .+++++.|+.|++||++++.     ....+.+|...+ .+++|+|++++|++++.||.|
T Consensus       177 ~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~d~~v  250 (340)
T 1got_B          177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQTFTGHESDI-NAICFFPNGNAFATGSDDATC  250 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-----eEEEEcCCcCCE-EEEEEcCCCCEEEEEcCCCcE
Confidence            9999999999999999443  89999999999999999887     677788888776 999999999999999999999


Q ss_pred             EEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591          239 MGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      ++||++........  ....+...+.++++  ++++|++|+.||.|++||+.+++   .+..+.+|.++|++++|+|+  
T Consensus       251 ~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~s~d--  323 (340)
T 1got_B          251 RLFDLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDD--  323 (340)
T ss_dssp             EEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTT--
T ss_pred             EEEECCCCcEEEEE--ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc---EeeEeecCCCcEEEEEEcCC--
Confidence            99999887322211  11223335666655  58999999999999999998877   66678899999999999999  


Q ss_pred             CCCeEEEEccCCCeEEEEE
Q 018591          317 GGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       317 ~~~~~l~s~~~dg~i~iw~  335 (353)
                        +.+|++|+.||.|++||
T Consensus       324 --g~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          324 --GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --SSCEEEEETTSCEEEEC
T ss_pred             --CCEEEEEcCCccEEecC
Confidence              99999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-50  Score=325.28  Aligned_cols=284  Identities=20%  Similarity=0.217  Sum_probs=249.9

Q ss_pred             CCceeeeeeCccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCcee--eEEeccCceeeEEEEEe--CCEEEEecC
Q 018591            5 SHRSLAVLSGHVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRM--FTKFGHGDGSVKAVVTV--GNKVFTAHQ   74 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~s~~~   74 (353)
                      .+...+.+++|.++|++++|+      +++|+||+.|++|++||+.+++.  ...+.+|...|.++.++  +..+++++.
T Consensus        21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~  100 (321)
T 3ow8_A           21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL  100 (321)
T ss_dssp             CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence            455667788999999999995      45899999999999999877654  45688999999999998  779999999


Q ss_pred             CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591           75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV  152 (353)
Q Consensus        75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i  152 (353)
                      |++|++||+++++     .+.                           .+..|...+.+++|+|  ++|++|+.||.|++
T Consensus       101 D~~i~lWd~~~~~-----~~~---------------------------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i  148 (321)
T 3ow8_A          101 DAHIRLWDLENGK-----QIK---------------------------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI  148 (321)
T ss_dssp             TSEEEEEETTTTE-----EEE---------------------------EEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred             CCcEEEEECCCCC-----EEE---------------------------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence            9999999998775     221                           2225777888999999  89999999999999


Q ss_pred             EEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          153 WRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       153 wd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      ||+++++....+..|...|.+++|++  .++++++.||.|++||+++++     ....+.+|...+ .+++|+|++++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v-~~l~~spd~~~l~  222 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLHTLEGHAMPI-RSLTFSPDSQLLV  222 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCC-CEEEECTTSCEEE
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEcccCCce-eEEEEcCCCCEEE
Confidence            99999999999989999999999944  389999999999999999887     677788888766 9999999999999


Q ss_pred             eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591          231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC  308 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~  308 (353)
                      +++.|+.|++||++..    .....+.+|...+.+++++  +.+|++++.|+.|++||+.+++   .+..+.+|...|.+
T Consensus       223 s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~h~~~v~~  295 (321)
T 3ow8_A          223 TASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVWG  295 (321)
T ss_dssp             EECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEE
T ss_pred             EEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEcCCCCcEEE
Confidence            9999999999999887    5566778899888888774  8899999999999999999877   67778899999999


Q ss_pred             EEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          309 LQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       309 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      ++|+|+    +++|++++.||.|++||..
T Consensus       296 v~~s~~----g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          296 VKYNGN----GSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECTT----SSEEEEEETTCCEEEEECC
T ss_pred             EEECCC----CCEEEEEeCCCeEEEEeCC
Confidence            999999    9999999999999999964

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-49  Score=325.45  Aligned_cols=289  Identities=25%  Similarity=0.307  Sum_probs=246.8

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      .+...+|+||.++|++++|+  +++|+||+.||+|++||..+++....+..|...|.+++|+  +..+++++.|+.+++|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            45678899999999999996  8899999999999999999999999999999999999998  8899999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      ++........                          ......+.+|...|.++.|++  ..+++++.|++|++||+++++
T Consensus       134 ~~~~~~~~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~  187 (354)
T 2pbi_B          134 PLTFDKNENM--------------------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ  187 (354)
T ss_dssp             ECCCCTTCCS--------------------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEeccccccc--------------------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence            9865431100                          011233447999999999999  689999999999999999999


Q ss_pred             eeeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591          160 CLESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ++..+.+|...|.++++.+    +.+++++.||.|++||+++++     ....+..|...+ .+++|+|++.+|++++.|
T Consensus       188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~D  261 (354)
T 2pbi_B          188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQAFETHESDV-NSVRYYPSGDAFASGSDD  261 (354)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEECTTSSEEEEEETT
T ss_pred             EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCCCCe-EEEEEeCCCCEEEEEeCC
Confidence            9999999999999999832    489999999999999999987     677788888776 999999999999999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      +.|++||++........  ....+...+.++.  +++++|++|+.|+.|++||+.+++   .+..+.+|.+.|++++|+|
T Consensus       262 ~~v~lwd~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIY--SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---RVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             SCEEEEETTTTEEEEEE--CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEEEECT
T ss_pred             CeEEEEECCCCcEEEEE--cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---eEEEEECCCCcEEEEEECC
Confidence            99999999876322111  1112223444554  469999999999999999998877   5667889999999999999


Q ss_pred             CCCCCCeEEEEccCCCeEEEEE
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      +    +++|++|+.||+|++|+
T Consensus       337 d----g~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          337 D----GTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             T----SSCEEEEETTSEEEEEC
T ss_pred             C----CCEEEEEcCCCCEEecC
Confidence            9    99999999999999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.8e-50  Score=332.97  Aligned_cols=304  Identities=23%  Similarity=0.304  Sum_probs=249.0

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      ....+.++|+||.++|++++|+  +++|+||+.||+|++||+.+++....+..|...|.+++|+  +++|++++.|+.++
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~  133 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS  133 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred             ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence            3556778999999999999996  8899999999999999999999999999999999999998  88999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~  156 (353)
                      +|++........                         .......+.+|.+.|.++.|.|   ..|++|+.|+.|++||++
T Consensus       134 iw~~~~~~~~~~-------------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~  188 (380)
T 3iz6_a          134 IFNLSSQADRDG-------------------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT  188 (380)
T ss_dssp             EEECCCCSSCCC-------------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT
T ss_pred             EEECCCCccccC-------------------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC
Confidence            999976431100                         0011233448999999999988   579999999999999999


Q ss_pred             Cceeeeec-----cccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          157 DLKCLESI-----KAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       157 ~~~~~~~~-----~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      +++.+..+     .+|...|.++++.   ++.+++|+.|++|++||++...    .....+.+|...+ .+++|+|++++
T Consensus       189 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~~~~~h~~~v-~~v~~~p~~~~  263 (380)
T 3iz6_a          189 TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVRTYHGHEGDI-NSVKFFPDGQR  263 (380)
T ss_dssp             TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCEEECCCSSCC-CEEEECTTSSE
T ss_pred             CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceEEECCcCCCe-EEEEEecCCCe
Confidence            99888776     6789999999993   3599999999999999998543    2567788888876 99999999999


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeec---cccceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc-cCC
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACET---KAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI-TGH  302 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~h  302 (353)
                      |++++.||.|++||++++..........   ..+...+  .++++++++|++|+.||.|++||...++....+..+ .+|
T Consensus       264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h  343 (380)
T 3iz6_a          264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH  343 (380)
T ss_dssp             EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence            9999999999999999874322211111   1111224  445557999999999999999999887744333222 689


Q ss_pred             CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      .+.|++++|+|+    +.+|++|+.||+|++|++...+.
T Consensus       344 ~~~v~~l~~s~d----g~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          344 EGRISCLGLSSD----GSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             CCCCCEEEECSS----SSEEEEECTTSCEEEEECCSSSS
T ss_pred             CCceEEEEECCC----CCEEEEeeCCCCEEEEecCCCcc
Confidence            999999999999    99999999999999999987643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-48  Score=314.09  Aligned_cols=285  Identities=17%  Similarity=0.229  Sum_probs=242.9

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      .+..++|.+|.+.|++++|+  +++|++|+.||+|++||+++++.+..+..|..+|.++.|.  +++|++|+.|++|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            35678899999999999996  8899999999999999999999999999999999999998  8899999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL-  158 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~-  158 (353)
                      |+++++     .                           ...+.+|...|.+++|+|  .++++|+.|+.|++||++++ 
T Consensus        83 d~~~~~-----~---------------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~  130 (304)
T 2ynn_A           83 NYNTGE-----K---------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW  130 (304)
T ss_dssp             ETTTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT
T ss_pred             ECCCCc-----E---------------------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc
Confidence            998876     2                           223347999999999999  79999999999999999877 


Q ss_pred             eeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeec
Q 018591          159 KCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGG  233 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~  233 (353)
                      .....+.+|...|.+++|++   ..+++++.|++|++||++...     ....+..+....+..+.|+|  ++.+|++++
T Consensus       131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s  205 (304)
T 2ynn_A          131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (304)
T ss_dssp             EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred             chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence            55677889999999999954   389999999999999998776     33344433333348889886  678999999


Q ss_pred             CCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591          234 SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       234 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~  311 (353)
                      .|+.|++||++++    .....+.+|...+.++.++  +++|++|+.||.|++||+.+++   .+..+..|...+.+++|
T Consensus       206 ~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~---~~~~~~~~~~~~~~~~~  278 (304)
T 2ynn_A          206 DDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIAT  278 (304)
T ss_dssp             TTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEECCSSSSEEEEEE
T ss_pred             CCCeEEEEeCCCC----ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---eeeeccCCCccEEEEEE
Confidence            9999999999987    5667778898888877765  7899999999999999999887   66777889999999999


Q ss_pred             ecCCCCCCe--EEEEccCCCeEEEEEcCCC
Q 018591          312 SPNAVGGGF--LLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       312 ~~~~~~~~~--~l~s~~~dg~i~iw~~~~~  339 (353)
                      +|+    +.  ++++|+.|| +.+|++.+.
T Consensus       279 ~~~----~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          279 HPT----GRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             CTT----CGGGCEEEEETTE-EEEEECC--
T ss_pred             CCC----CCceEEEEecCCc-eEEEEeccC
Confidence            998    43  688887665 778887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-48  Score=315.18  Aligned_cols=303  Identities=15%  Similarity=0.202  Sum_probs=233.3

Q ss_pred             CCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCc--eeeEEe-cc-CceeeEEEEEe--CCEEEEecCCCc
Q 018591            4 KSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDL--RMFTKF-GH-GDGSVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      ++.+++.+|++|.++|++++|++++|++|+.|++|++||+.++  +....+ .. |...|.+++|+  +++|++++.|++
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            4677899999999999999999779999999999999999875  455556 44 89999999998  789999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      |++|+++.......                         .......+.+|...|.+++|+|  .+|++|+.|+.|++||+
T Consensus        82 v~iw~~~~~~~~~~-------------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           82 VSIWAKEESADRTF-------------------------EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             EEEEEC-------C-------------------------CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             EEEEEcccCcCccc-------------------------cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            99999864321000                         0011233458999999999999  89999999999999999


Q ss_pred             CC----ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC--CC
Q 018591          156 AD----LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD--GK  227 (353)
Q Consensus       156 ~~----~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~  227 (353)
                      +.    .+++..+.+|...|.+++|++  .+|++++.|++|++||...+.   ..+...+.+|...+ .+++|+|+  +.
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~~~v-~~~~~~~~~~~~  212 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHEGTV-WSSDFDKTEGVF  212 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCE-EEEEECCSSSSC
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCCCcE-EEEEecCCCCee
Confidence            43    356778889999999999944  389999999999999987652   12566778888776 99999998  67


Q ss_pred             eEEeecCCCcEEEeecccccc----ceeeeeeccc-cceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          228 WVYGGGSDGFVMGWEGNVEIV----RWKLACETKA-HEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~-~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      +|++++.|+.|++||+.....    .+.....+.. |...+.+++++ +.+|++++.||.|++||..+++.........+
T Consensus       213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  292 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC  292 (330)
T ss_dssp             EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred             EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence            899999999999999876421    1123333443 78889999886 66899999999999999886532112223467


Q ss_pred             CCc-CeEEEEeec--CCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          302 HEG-PVKCLQASP--NAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       302 h~~-~v~~~~~~~--~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      |.. .|.+++|+|  +    +++|++|+.||+|++|++++.
T Consensus       293 h~~~~v~~v~~~~~~~----~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          293 HGVYEINVVKWLELNG----KTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             TTTSCEEEEEEC---------CCEEEEETTSEEEEEEC---
T ss_pred             cccceEEEEEEecCCC----ceEEEEecCCCcEEEEEeccC
Confidence            887 899999999  6    789999999999999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.8e-47  Score=309.32  Aligned_cols=285  Identities=24%  Similarity=0.410  Sum_probs=245.3

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      ..++..++.+|.++|++++|+  +++|++|+.||.|++|++.+++....+.+|...|.+++|+  +++|++++.||.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            456778899999999999996  8899999999999999999999999999999999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||+++++     .                           ...+.+|...|.++.|+|  +++++|+.|+.|++||++++
T Consensus        92 wd~~~~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  139 (312)
T 4ery_A           92 WDVSSGK-----C---------------------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG  139 (312)
T ss_dssp             EETTTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EECCCCc-----E---------------------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence            9998765     2                           222337999999999999  89999999999999999999


Q ss_pred             eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +++..+..|..+|.+++|++  ..+++++.||.|++||+++++     ....+..+....+..++|+|+++++++++.|+
T Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  214 (312)
T 4ery_A          140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  214 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred             EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            99999999999999999943  489999999999999999886     44444444444559999999999999999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeE----EEEE-EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAV----LCVC-LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v----~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~  311 (353)
                      .|++||++++    +....+.+|....    ..+. .++.+|++|+.||.|++||+.+++   .+..+.+|...|.+++|
T Consensus       215 ~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~  287 (312)
T 4ery_A          215 TLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVISTAC  287 (312)
T ss_dssp             EEEEEETTTT----EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---EEEEECCCSSCEEEEEE
T ss_pred             eEEEEECCCC----cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---hhhhhhccCCcEEEEee
Confidence            9999999987    3444444444322    2233 348899999999999999999877   67778899999999999


Q ss_pred             ecCCCCCCeEEEEcc--CCCeEEEEEcC
Q 018591          312 SPNAVGGGFLLYSGS--LDKSLRVWWVS  337 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~--~dg~i~iw~~~  337 (353)
                      +|+    +.+|++++  .|+.|++|+..
T Consensus       288 ~p~----~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          288 HPT----ENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSS----SSEEEEEECTTTCCEEEEECC
T ss_pred             cCc----CCceEEEEccCCccEEEecCC
Confidence            999    99999986  69999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-47  Score=313.28  Aligned_cols=304  Identities=20%  Similarity=0.283  Sum_probs=240.6

Q ss_pred             CCceeeeeeCccC-ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeE---EeccCceeeEEEEEe--CCEEEEecCCC
Q 018591            5 SHRSLAVLSGHVG-SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFT---KFGHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus         5 ~~~~~~~l~~h~~-~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      ..+++.++++|.+ .|++++|+  |++||+|+.|++|++||+.++....   ...+|...|.+++|+  +++|++++.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4577899999998 99999996  8999999999999999998876432   236899999999998  78999999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      ++++|+++.+...   .                           ...+.+|...|.+++|+|  ++|++|+.|+.|++||
T Consensus        84 ~v~iw~~~~~~~~---~---------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd  133 (345)
T 3fm0_A           84 TTCIWKKNQDDFE---C---------------------------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE  133 (345)
T ss_dssp             CEEEEEECCC-EE---E---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEccCCCeE---E---------------------------EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEE
Confidence            9999998765411   1                           122337999999999999  8999999999999999


Q ss_pred             cCCc---eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591          155 VADL---KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       155 ~~~~---~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  229 (353)
                      ++++   +++..+.+|...|.+++|++  .+|++++.|+.|++||.+.++.   .....+.+|...+ .+++|+|++++|
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~~v-~~l~~sp~g~~l  209 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHESTV-WSLAFDPSGQRL  209 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCE-EEEEECTTSSEE
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCCce-EEEEECCCCCEE
Confidence            9765   45667888999999999944  3899999999999999987641   1345677888776 999999999999


Q ss_pred             EeecCCCcEEEeecccccc-----------ceeeeeeccc-cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcce--
Q 018591          230 YGGGSDGFVMGWEGNVEIV-----------RWKLACETKA-HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKL--  293 (353)
Q Consensus       230 ~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~--  293 (353)
                      ++++.|+.|++|+......           .+.....+.+ |...+.+++++  +..|++++.|+.|++|+.......  
T Consensus       210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~  289 (345)
T 3fm0_A          210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ  289 (345)
T ss_dssp             EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS
T ss_pred             EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce
Confidence            9999999999999743211           1122233333 67778888775  789999999999999998764311  


Q ss_pred             ----EEeccccCCCcCeEEEEeecCCCCCC-eEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          294 ----CRVGAITGHEGPVKCLQASPNAVGGG-FLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       294 ----~~~~~~~~h~~~v~~~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                          .......+|...|++++|+|+    + .+|++|+.||+|++|++.+++.+...+
T Consensus       290 ~~~~~~~~~~~~h~~~V~~v~~~p~----~~~~laS~s~Dg~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          290 PTFSLTAHLHQAHSQDVNCVAWNPK----EPGLLASCSDDGEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             CCEEEEEEETTSSSSCEEEEEECSS----STTEEEEEETTSCEEEEEECC--------
T ss_pred             eeEEEEeeecccccCcEeEeEEeCC----CceEEEEcCCCCcEEEEEecCCCCccccc
Confidence                112234689999999999998    6 599999999999999999988765543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-47  Score=310.01  Aligned_cols=286  Identities=25%  Similarity=0.393  Sum_probs=237.1

Q ss_pred             CCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-----ceeeEEeccCceeeEEEEEe--CCEEEEecC
Q 018591            5 SHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-----LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ   74 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~   74 (353)
                      ...+..+|.||.++|++++|+   +++|++|+.|++|++||+..     +..+..+.+|...|.+++|+  +++|++++.
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            456778899999999999996   47999999999999999753     34577889999999999998  789999999


Q ss_pred             CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591           75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV  152 (353)
Q Consensus        75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i  152 (353)
                      |++|++||+++++     .                           ...+.+|...|.+++|++  .++++|+.|+.|++
T Consensus        86 D~~v~~wd~~~~~-----~---------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v  133 (319)
T 3frx_A           86 DKTLRLWDVATGE-----T---------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV  133 (319)
T ss_dssp             TSEEEEEETTTTE-----E---------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCEEEEEECCCCC-----e---------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            9999999998875     2                           223348999999999999  79999999999999


Q ss_pred             EEcCCceeeeeccccCcceEEEEEeCC--------eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591          153 WRVADLKCLESIKAHDDAVNGLVASKG--------IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       153 wd~~~~~~~~~~~~~~~~v~~i~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (353)
                      ||++ ++++..+.+|...|.++.+.+.        .+++++.|+.|++||+++.+     ....+.+|...+ .+++|+|
T Consensus       134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~h~~~v-~~~~~sp  206 (319)
T 3frx_A          134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEADFIGHNSNI-NTLTASP  206 (319)
T ss_dssp             EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEEEECCCCSCE-EEEEECT
T ss_pred             EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hheeecCCCCcE-EEEEEcC
Confidence            9986 5677888899999999999432        79999999999999999876     667778888776 9999999


Q ss_pred             CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEecc----
Q 018591          225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGA----  298 (353)
Q Consensus       225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----  298 (353)
                      ++++|++++.||.|++||+...+    ....+.. ...+.++++  ++.+|++++.+ .+++|+++.......+..    
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~  280 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG  280 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc
Confidence            99999999999999999999873    3333333 345666655  57888887765 599999987653222211    


Q ss_pred             -ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          299 -ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       299 -~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                       ...|...+.+++|+|+    |++|++|+.||.|++|++.+.
T Consensus       281 ~~~~~~~~v~~~~~spd----g~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          281 YSKAAEPHAVSLAWSAD----GQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCGGGCCCEEEEEECTT----SSEEEEEETTSCEEEEEEEEC
T ss_pred             cccCcCcceeEEEECCC----CCEEEEeecCceEEEEEEeec
Confidence             1245678999999999    999999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.3e-47  Score=316.19  Aligned_cols=287  Identities=20%  Similarity=0.231  Sum_probs=224.5

Q ss_pred             eeeeCccCceEEEEEC--CcEEEEEeC------CCcEEEEeCCCceee----EEeccCceeeEEEEEe-CCEEEEecCCC
Q 018591           10 AVLSGHVGSVSSLALC--GEFILSASQ------GKDIIVWQQPDLRMF----TKFGHGDGSVKAVVTV-GNKVFTAHQDS   76 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~~~l~s~~~------dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~-~~~l~s~~~dg   76 (353)
                      ....+|.+.|++++|+  |++|++|+.      |+.|++|+..++...    .....|...|.+++|+ .+.+++++.||
T Consensus        36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg  115 (357)
T 4g56_B           36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSG  115 (357)
T ss_dssp             ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTS
T ss_pred             CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCC
Confidence            3445799999999996  999999997      788999998776533    3345678889999998 67788899999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      +|++||+.+++.....                            .....+|...|++++|+|  ++|++|+.|+.|++||
T Consensus       116 ~v~lWd~~~~~~~~~~----------------------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B          116 AVELWEILEKESLLVN----------------------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             CEEEC--------CCC----------------------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEEEeeccccceeEEE----------------------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999876521110                            111227999999999999  7999999999999999


Q ss_pred             cCCceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeee--eccCCceeeEEEEcCC-CCe
Q 018591          155 VADLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGIL--EGHKDVSLNSVVVSDD-GKW  228 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~  228 (353)
                      +++++++..+.+|...|++++|.+   ..+++++.||.|++||+++++     ....+  ..+.. .+.+++|+|+ +.+
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-----~~~~~~~~~~~~-~v~~v~~sp~~~~~  241 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-----PATRIDFCASDT-IPTSVTWHPEKDDT  241 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-----CBCBCCCTTCCS-CEEEEEECTTSTTE
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-----eeeeeeeccccc-cccchhhhhcccce
Confidence            999999999999999999999932   378999999999999999876     33322  23333 3599999997 568


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCcceEEeccccCCCcC
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP  305 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~  305 (353)
                      |++|+.|+.|++||++++    +....+..|...+.+++++  + ++|++|+.|++|+|||+++++   .+. ..+|.+.
T Consensus       242 la~g~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~---~~~-~~~H~~~  313 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE---VFR-DLSHRDF  313 (357)
T ss_dssp             EEEEESSSCEEEEESSCG----GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE---EEE-ECCCSSC
T ss_pred             EEEeecccceeEEECCCC----cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc---EeE-ECCCCCC
Confidence            889999999999999987    4556677888889888875  4 689999999999999999876   333 3479999


Q ss_pred             eEEEEeec-CCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          306 VKCLQASP-NAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       306 v~~~~~~~-~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      |++++|+| +    +.+|++++.||+|++|++.+....
T Consensus       314 V~~vafsP~d----~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          314 VTGVAWSPLD----HSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             EEEEEECSSS----TTEEEEEETTSCEEEEECC-----
T ss_pred             EEEEEEeCCC----CCEEEEEcCCCeEEEEECCCCCcc
Confidence            99999999 5    889999999999999999765443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=311.95  Aligned_cols=283  Identities=20%  Similarity=0.208  Sum_probs=225.0

Q ss_pred             eCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC-----------ceeeEEeccCceeeEEEEEe-CCEEEEecCCCcE
Q 018591           13 SGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD-----------LRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRI   78 (353)
Q Consensus        13 ~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i   78 (353)
                      ..|...|.+++|+  |++|++++ |+++++||...           .........+...|.+++|+ .+.|++++.||+|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v  105 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV  105 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence            4578889999996  88888887 77888887321           11111222345679999998 7789999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~  156 (353)
                      ++||+++++.....                            .....+|...|++++|+|  ++|++|+.|+.|++||++
T Consensus       106 ~lWd~~~~~~~~~~----------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B          106 ELWELDENETLIVS----------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEEEECTTSSCEEE----------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEEeccCCCceeEe----------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            99999887632111                            112237999999999999  899999999999999999


Q ss_pred             CceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCC-CCeEEe
Q 018591          157 DLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDD-GKWVYG  231 (353)
Q Consensus       157 ~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~  231 (353)
                      +++++..+.+|...|++++|++   ..+++++.|++|++||+++++     ....+.. .....+.+++|+|+ ++++++
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----PASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----CEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-----eeeeeecceeeccceeeeecCCCCcceEE
Confidence            9999999999999999999933   378999999999999999887     4444332 22333589999995 568899


Q ss_pred             ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEE
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKC  308 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~  308 (353)
                      |+.||.|++||++++    +....+.+|...|.++.++  + ++|++|+.|++|++||+.+++    +..+.+|.+.|++
T Consensus       233 g~~dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~----~~~~~~H~~~V~~  304 (344)
T 4gqb_B          233 GDENGTVSLVDTKST----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE----LFRSQAHRDFVRD  304 (344)
T ss_dssp             EETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE----EEEECCCSSCEEE
T ss_pred             eccCCcEEEEECCCC----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc----EEEEcCCCCCEEE
Confidence            999999999999987    5666778899999988875  4 589999999999999998865    3356899999999


Q ss_pred             EEeecCCCCCC-eEEEEccCCCeEEEEEcCCCCC
Q 018591          309 LQASPNAVGGG-FLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       309 ~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ++|+|+    + .+|++++.||+|++|++.+...
T Consensus       305 v~~sp~----~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          305 ATWSPL----NHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEECSS----STTEEEEEETTSCEEEEECCC---
T ss_pred             EEEeCC----CCeEEEEEcCCCeEEEEECCCCCC
Confidence            999998    5 4788999999999999987643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.5e-46  Score=306.51  Aligned_cols=286  Identities=17%  Similarity=0.274  Sum_probs=227.3

Q ss_pred             CceeeeeeCccCceEEEEE--------CCcEEEEEeCCCcEEEEeCCC-------ceeeEEeccCceeeEEEEEe--CCE
Q 018591            6 HRSLAVLSGHVGSVSSLAL--------CGEFILSASQGKDIIVWQQPD-------LRMFTKFGHGDGSVKAVVTV--GNK   68 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~--------~~~~l~s~~~dg~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~--~~~   68 (353)
                      .++..+|+||.+.|++++|        ++++|++|+.|++|++||+.+       +.....+.+|...|.+++|+  +.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            4567889999999999999        478999999999999999864       34667889999999999998  789


Q ss_pred             EEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC
Q 018591           69 VFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW  146 (353)
Q Consensus        69 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~  146 (353)
                      +++++.|++|++||+++++     .                           ...+.+|...|.+++|+|  .+|++++.
T Consensus        91 l~s~s~D~~v~lwd~~~~~-----~---------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGT-----T---------------------------YKRFVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             EEEEETTSEEEEEETTSSC-----E---------------------------EEEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred             EEEEcCCCcEEEEECCCCc-----E---------------------------EEEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence            9999999999999998775     2                           222347999999999999  79999999


Q ss_pred             CCcEEEEEcCCceeeee--ccccCcceEEEEEeC------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeecc
Q 018591          147 DKTLKVWRVADLKCLES--IKAHDDAVNGLVASK------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGH  212 (353)
Q Consensus       147 dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  212 (353)
                      |+.|++||+........  ...|...|.+++|++            .++++++.|+.|++||.. .+     ....+.+|
T Consensus       139 d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~-----~~~~~~~h  212 (343)
T 2xzm_R          139 EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ-----IRYTFKAH  212 (343)
T ss_dssp             TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE-----EEEEEECC
T ss_pred             CCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc-----eeEEEcCc
Confidence            99999999974333222  237889999999943            479999999999999943 32     45667788


Q ss_pred             CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591          213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      ...+ .+++|+|++++|++++.||.|++||+......   ...+ .+...+.++++  ++.++++ +.|+.|++||+.++
T Consensus       213 ~~~v-~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~---~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          213 ESNV-NHLSISPNGKYIATGGKDKKLLIWDILNLTYP---QREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQ  286 (343)
T ss_dssp             SSCE-EEEEECTTSSEEEEEETTCEEEEEESSCCSSC---SEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSC
T ss_pred             cccc-eEEEECCCCCEEEEEcCCCeEEEEECCCCccc---ceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCC
Confidence            8766 99999999999999999999999999543211   1111 12334666665  4666654 56788999999876


Q ss_pred             cceE--Eec--------cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          291 GKLC--RVG--------AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       291 ~~~~--~~~--------~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +...  .+.        ...+|...|.+++|+|+    +++|++|+.||.|++|+++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL----GKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS----SCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCceEEeecCcchhhhhhcCCCCceEEEEECCC----CCeEEEecCCceEEEEEEEcc
Confidence            5321  111        12378889999999999    999999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-45  Score=312.46  Aligned_cols=290  Identities=23%  Similarity=0.385  Sum_probs=257.0

Q ss_pred             CceeeeeeCccCc-eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591            6 HRSLAVLSGHVGS-VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus         6 ~~~~~~l~~h~~~-v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~   84 (353)
                      .+....+.+|.+. +.++.+++++|++|+.||.|++||+.+++.+..+.+|...|.++.++++.+++++.||+|++||++
T Consensus       108 ~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             CCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             cceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECC
Confidence            3456789999986 588889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      +++     .+.                           .+.+|...|.++.++++.+++|+.||.|++||+++++.+..+
T Consensus       188 ~~~-----~~~---------------------------~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          188 TGE-----CIH---------------------------TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             TTE-----EEE---------------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             cCc-----EEE---------------------------EECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            775     222                           223799999999999999999999999999999999999999


Q ss_pred             cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          165 KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       165 ~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      .+|...|.++.+.++.+++++.||.|++||+++++     ....+.+|...+ .++.|  ++.++++++.||.|++||++
T Consensus       236 ~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v-~~~~~--~~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----CLHTLQGHTNRV-YSLQF--DGIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             ECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----EEEEECCCSSCE-EEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred             cCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----EeEEecCCCCce-EEEEE--CCCEEEEEeCCCeEEEEECC
Confidence            99999999999988899999999999999999887     677778887765 88888  78899999999999999999


Q ss_pred             ccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591          245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s  324 (353)
                      ++    +....+.+|...+.++.++++++++|+.||.|++||+++++....+.....|...|++++|++      ++|++
T Consensus       308 ~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~s  377 (445)
T 2ovr_B          308 TG----NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK------NFVIT  377 (445)
T ss_dssp             TC----CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS------SEEEE
T ss_pred             CC----CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC------CEEEE
Confidence            87    556667788999999999999999999999999999998874433333334889999999964      59999


Q ss_pred             ccCCCeEEEEEcCCCCCcccc
Q 018591          325 GSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       325 ~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      |+.||.|++||+.+++.+...
T Consensus       378 ~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          378 SSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCeEEEEECCCCceeeee
Confidence            999999999999998877654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.5e-45  Score=300.09  Aligned_cols=289  Identities=26%  Similarity=0.368  Sum_probs=234.1

Q ss_pred             CCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-----eeeEEeccCceeeEEEEEe--CCEEEEecC
Q 018591            5 SHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-----RMFTKFGHGDGSVKAVVTV--GNKVFTAHQ   74 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~--~~~l~s~~~   74 (353)
                      +.++..+|+||+++|++|+|+   +++|+||+.||+|+|||+.+.     .+...+.+|...|.+++|+  +++|++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            445667899999999999996   579999999999999998754     3567789999999999998  789999999


Q ss_pred             CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591           75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV  152 (353)
Q Consensus        75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i  152 (353)
                      |+.|++|+.......                                .....+...+..+.+.+  ..+++++.|+.+++
T Consensus       107 d~~i~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~  154 (340)
T 4aow_A          107 DGTLRLWDLTTGTTT--------------------------------RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL  154 (340)
T ss_dssp             TSEEEEEETTTTEEE--------------------------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             cccceEEeeccccee--------------------------------eeecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence            999999998876521                                11125667777888887  89999999999999


Q ss_pred             EEcCCcee-eeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          153 WRVADLKC-LESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       153 wd~~~~~~-~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      ||...... .....+|...+..+++.+    ..+++++.|+.|++||+++.+     ....+.+|...+ .+++|+|+++
T Consensus       155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v-~~~~~s~~~~  228 (340)
T 4aow_A          155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKTNHIGHTGYL-NTVTVSPDGS  228 (340)
T ss_dssp             ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEECTTSS
T ss_pred             EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eeeEecCCCCcE-EEEEECCCCC
Confidence            99876543 455678899999999932    278899999999999999887     677788888776 9999999999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEe------cccc
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRV------GAIT  300 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~  300 (353)
                      +|++++.||.|++||++...    ....+.. ...+.++.++ +..+++++.|+.|++||+++......+      ....
T Consensus       229 ~l~s~s~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  303 (340)
T 4aow_A          229 LCASGGKDGQAMLWDLNEGK----HLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK  303 (340)
T ss_dssp             EEEEEETTCEEEEEETTTTE----EEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------
T ss_pred             EEEEEeCCCeEEEEEeccCc----eeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeecc
Confidence            99999999999999999873    3333333 3456666665 456677778999999999876532222      2345


Q ss_pred             CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +|...|++++|+|+    +++|++|+.||.|+|||+++|.
T Consensus       304 ~h~~~v~~l~~s~d----g~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          304 AEPPQCTSLAWSAD----GQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCCCCEEEEEECTT----SSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCCCEEEEEECCC----CCEEEEEeCCCEEEEEeCCCcC
Confidence            78999999999999    9999999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-45  Score=313.37  Aligned_cols=287  Identities=24%  Similarity=0.348  Sum_probs=244.7

Q ss_pred             eeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccc
Q 018591           10 AVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSEN   89 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~   89 (353)
                      ....+|...|+++++++++|++|+.||.|++||+.+++....+.+|...|.++.+++++|++|+.||.|++||+++++  
T Consensus       127 ~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~--  204 (435)
T 1p22_A          127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE--  204 (435)
T ss_dssp             ECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC--
T ss_pred             ecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc--
Confidence            344567788999999999999999999999999999999999999999999999999999999999999999998875  


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee---eeccc
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL---ESIKA  166 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~  166 (353)
                         .+.                           .+.+|...|.++.|+++.+++|+.||.|++||+++++..   ..+.+
T Consensus       205 ---~~~---------------------------~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  254 (435)
T 1p22_A          205 ---MLN---------------------------TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG  254 (435)
T ss_dssp             ---EEE---------------------------EECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             ---EEE---------------------------EEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecC
Confidence               222                           223789999999999999999999999999999887655   66788


Q ss_pred             cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          167 HDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       167 ~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      |...|.++.+.++.+++++.||.|++||+++++     ....+.+|...+ .++.++  ++++++|+.||.|++||++++
T Consensus       255 ~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v-~~~~~~--~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          255 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHKRGI-ACLQYR--DRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCE-EEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred             CCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----EEEEEcCCCCcE-EEEEeC--CCEEEEEeCCCeEEEEECCCC
Confidence            999999999988899999999999999999987     777888888766 888884  679999999999999999987


Q ss_pred             ccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce------EEeccccCCCcCeEEEEeecCCCCCCe
Q 018591          247 IVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL------CRVGAITGHEGPVKCLQASPNAVGGGF  320 (353)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~  320 (353)
                          .....+.+|...+.++.+++.+|++|+.||.|++||+.+++..      ..+..+.+|.+.|++++|  +    +.
T Consensus       327 ----~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~----~~  396 (435)
T 1p22_A          327 ----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D----EF  396 (435)
T ss_dssp             ----CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C----SS
T ss_pred             ----CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C----CC
Confidence                5666778899999999999999999999999999998765421      145567899999999999  4    67


Q ss_pred             EEEEccCCCeEEEEEcCCCCCccccc
Q 018591          321 LLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       321 ~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +|++++.||.|++||+.+........
T Consensus       397 ~l~s~s~Dg~i~iwd~~~~~~~~~~~  422 (435)
T 1p22_A          397 QIVSSSHDDTILIWDFLNDPAAQAEP  422 (435)
T ss_dssp             CEEECCSSSEEEEEC-----------
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccCC
Confidence            89999999999999999877655444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-44  Score=307.47  Aligned_cols=289  Identities=22%  Similarity=0.375  Sum_probs=255.5

Q ss_pred             CCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~   82 (353)
                      ..+++++..+.+|.++|++++|++++|++|+.||+|++||+.+++.+..+.+|...|.++.++++.+++++.||.|++||
T Consensus       146 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          146 AVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD  225 (445)
T ss_dssp             TTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEE
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      +++++     .                           ...+.+|...|.++.+.++.+++|+.||.|++||+++++++.
T Consensus       226 ~~~~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (445)
T 2ovr_B          226 IETGQ-----C---------------------------LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH  273 (445)
T ss_dssp             SSSCC-----E---------------------------EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred             CCCCc-----E---------------------------EEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeE
Confidence            98765     2                           122337999999999988999999999999999999999999


Q ss_pred             eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      .+.+|...|.++.+.+..+++++.||.|++||+++++     ....+.+|...+ .++.+  +++++++++.||.|++||
T Consensus       274 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v-~~~~~--~~~~l~~~~~dg~i~vwd  345 (445)
T 2ovr_B          274 TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLT-SGMEL--KDNILVSGNADSTVKIWD  345 (445)
T ss_dssp             EECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCE-EEEEE--ETTEEEEEETTSCEEEEE
T ss_pred             EecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC-----EEEEEcCCcccE-EEEEE--eCCEEEEEeCCCeEEEEE
Confidence            9999999999999988899999999999999999987     677777887755 66666  467999999999999999


Q ss_pred             ccccccceeeeeecc---ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc--cCCCcCeEEEEeecCCCC
Q 018591          243 GNVEIVRWKLACETK---AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI--TGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~  317 (353)
                      ++++.    ....+.   .|...+.++.+++++|++|+.||.|++||+.+++....+...  .+|.+.|++++|+|+   
T Consensus       346 ~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---  418 (445)
T 2ovr_B          346 IKTGQ----CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT---  418 (445)
T ss_dssp             TTTCC----EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS---
T ss_pred             CCCCc----EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC---
Confidence            98873    334444   378899999999999999999999999999998844433211  478889999999999   


Q ss_pred             CCeEEEEccCCCe----EEEEEcCCC
Q 018591          318 GGFLLYSGSLDKS----LRVWWVSKQ  339 (353)
Q Consensus       318 ~~~~l~s~~~dg~----i~iw~~~~~  339 (353)
                       +.+|++|+.||+    |.+||+...
T Consensus       419 -~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          419 -KLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             -EEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             -EEEEEEcccCCCCccEEEEEECCCC
Confidence             999999999997    999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-44  Score=302.17  Aligned_cols=283  Identities=24%  Similarity=0.395  Sum_probs=231.3

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce------------------eeEEEEEe--CCEEEE
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG------------------SVKAVVTV--GNKVFT   71 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~------------------~v~~~~~~--~~~l~s   71 (353)
                      +|.+.|++++|+  |++||+|+ |+.+++|++.+++.+..+..|..                  .|.+++|+  +++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            699999999996  88999976 68999999999998888765532                  38999998  789999


Q ss_pred             ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc
Q 018591           72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT  149 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~  149 (353)
                      ++.|+.|++||+++++     .                           ...+.+|...|.+++|+|  ..|++++.|+.
T Consensus       141 ~~~d~~i~iwd~~~~~-----~---------------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~  188 (393)
T 1erj_A          141 GAEDRLIRIWDIENRK-----I---------------------------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRT  188 (393)
T ss_dssp             EETTSCEEEEETTTTE-----E---------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EcCCCeEEEEECCCCc-----E---------------------------EEEEccCCCCEEEEEEcCCCCEEEEecCCCc
Confidence            9999999999998765     2                           222347999999999998  79999999999


Q ss_pred             EEEEEcCCceeeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeee-------eccCCceeeE
Q 018591          150 LKVWRVADLKCLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGIL-------EGHKDVSLNS  219 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~  219 (353)
                      |++||++++++...+. +...+.++++.+   .++++++.|+.|++||++++.     ....+       .+|...+ .+
T Consensus       189 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~h~~~v-~~  261 (393)
T 1erj_A          189 VRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-----LVERLDSENESGTGHKDSV-YS  261 (393)
T ss_dssp             EEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----EEEEEC------CCCSSCE-EE
T ss_pred             EEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----EEEeecccccCCCCCCCCE-EE
Confidence            9999999999887775 567899999943   389999999999999999876     33333       4566655 99


Q ss_pred             EEEcCCCCeEEeecCCCcEEEeeccccccc--------eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591          220 VVVSDDGKWVYGGGSDGFVMGWEGNVEIVR--------WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       220 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~  289 (353)
                      ++|+|++++|++++.|+.|++||++.....        ......+.+|...+.++.++  +.+|++|+.|+.|++||..+
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999999999764221        12334566788888888774  88999999999999999998


Q ss_pred             CcceEEeccccCCCcCeEEEEeecCCC--CCCeEEEEccCCCeEEEEEcCCC
Q 018591          290 FGKLCRVGAITGHEGPVKCLQASPNAV--GGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      ++   .+..+.+|...|.+++|+|+..  .++.+|++|+.||+|++|++.+.
T Consensus       342 ~~---~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          342 GN---PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CC---EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             Ce---EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            87   6677889999999999986210  01789999999999999998754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.7e-44  Score=315.40  Aligned_cols=322  Identities=20%  Similarity=0.266  Sum_probs=247.5

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec-------cCceeeEEEEEe--CCEEEEe
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG-------HGDGSVKAVVTV--GNKVFTA   72 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~--~~~l~s~   72 (353)
                      ++++++.++.+|.+.|++++|+  +++|++|+.|++|++||+.+++.+..+.       +|.+.|.+++|+  +++|+++
T Consensus       178 ~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA  257 (611)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred             CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence            4567788999999999999996  8899999999999999999999988884       799999999998  7899999


Q ss_pred             cCCCcEEEEEcccCccceeEEeeccccc-------------cceeeeecccce--eEe-ecccceeeeeecCCceEEEEE
Q 018591           73 HQDSRIRVWKVSRSSENVFRLVDTLPTT-------------KDYLGKFMKQSN--YVQ-TRRHHKRLWIEHADSISCLTV  136 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~i~~~~~  136 (353)
                      +.|++|++||+++++.     +..++..             ...+........  ... ........+.+|...|++++|
T Consensus       258 s~D~~v~lWd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~  332 (611)
T 1nr0_A          258 SADKTIKIWNVATLKV-----EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS  332 (611)
T ss_dssp             ETTSEEEEEETTTTEE-----EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             eCCCeEEEEeCCCCce-----eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence            9999999999987652     2211110             000000000000  000 011123455689999999999


Q ss_pred             eC--CeEEEecCCCcEEEEEcCCceeeeec-cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCccccc--------
Q 018591          137 YN--GLIYSGSWDKTLKVWRVADLKCLESI-KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHS--------  204 (353)
Q Consensus       137 ~~--~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------  204 (353)
                      +|  ++|++++.|+.|++||+.+++....+ ..|...|.++++ +++.+++++.|+.+++|+..........        
T Consensus       333 spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~  412 (611)
T 1nr0_A          333 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS  412 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSS
T ss_pred             eCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCC
Confidence            99  89999999999999999998887766 679999999999 5569999999999999998754311000        


Q ss_pred             -c---------------------------eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec
Q 018591          205 -L---------------------------KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       205 -~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                       .                           ...+ .+... +.+++|+|++++|++|+.|+.|++||+..+..  ..... 
T Consensus       413 ~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~-v~~va~spdg~~lasgs~D~~v~lwd~~~~~~--~~~~~-  487 (611)
T 1nr0_A          413 QPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYN-SSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--SEVKT-  487 (611)
T ss_dssp             CEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSC-EEEEEECTTSCEEEEEETTSEEEEEEEETTEE--EEEEE-
T ss_pred             CCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCC-ceEEEEeCCCCEEEEeCCCCeEEEEEccCCce--eeeec-
Confidence             0                           0001 12222 48999999999999999999999999987521  11222 


Q ss_pred             cccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEec--cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591          257 KAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVG--AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       257 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~  332 (353)
                      ..|...|.++++  ++++|++++.|++|++|++.+...  .+.  .+.+|...|++++|+|+    +++|++|+.|++|+
T Consensus       488 ~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~--~~~~~~~~~H~~~V~~v~fspd----g~~lasgs~D~~v~  561 (611)
T 1nr0_A          488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE--LAHTNSWTFHTAKVACVSWSPD----NVRLATGSLDNSVI  561 (611)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE--ESCCCCCCCCSSCEEEEEECTT----SSEEEEEETTSCEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc--eeeeeeeeecccceeEEEECCC----CCEEEEEECCCcEE
Confidence            567778877776  589999999999999999987332  222  23459999999999999    99999999999999


Q ss_pred             EEEcCCCCC
Q 018591          333 VWWVSKQSS  341 (353)
Q Consensus       333 iw~~~~~~~  341 (353)
                      +|+++++..
T Consensus       562 lW~~~~~~~  570 (611)
T 1nr0_A          562 VWNMNKPSD  570 (611)
T ss_dssp             EEETTCTTS
T ss_pred             EEECCCccc
Confidence            999988653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-44  Score=319.07  Aligned_cols=292  Identities=17%  Similarity=0.204  Sum_probs=243.2

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEe--CCEEEEecCC--
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQD--   75 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d--   75 (353)
                      .+++....|.+|.+.|++++|+  |++||+|+.||+|+|||+.++  .....+.+|.+.|.+++|+  ++.|++++.+  
T Consensus        47 ~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           47 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            4567888999999999999996  899999999999999998754  3456788899999999998  7888888765  


Q ss_pred             --CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcE
Q 018591           76 --SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTL  150 (353)
Q Consensus        76 --g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v  150 (353)
                        +.|++||.  +.     ..                           ..+.+|...|.+++|+|  . .|++|+.|+.|
T Consensus       127 ~~~~v~~wd~--~~-----~~---------------------------~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v  172 (611)
T 1nr0_A          127 RFGHVFLFDT--GT-----SN---------------------------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  172 (611)
T ss_dssp             CSEEEEETTT--CC-----BC---------------------------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             ceeEEEEeeC--CC-----Cc---------------------------ceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence              46777774  22     11                           11238999999999999  3 59999999999


Q ss_pred             EEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeee-------ccCCceeeEEE
Q 018591          151 KVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILE-------GHKDVSLNSVV  221 (353)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~~  221 (353)
                      ++||..++++...+.+|...|.+++|+++  +|++++.|++|++||+.+++     ....+.       +|...+ .+++
T Consensus       173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~-----~~~~~~~~~~~~~~h~~~V-~~v~  246 (611)
T 1nr0_A          173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT-----KTGVFEDDSLKNVAHSGSV-FGLT  246 (611)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEECBCTTSSSCSSSSCE-EEEE
T ss_pred             EEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc-----EeeeeccccccccccCCCE-EEEE
Confidence            99999999999999999999999999443  89999999999999998876     444442       577665 9999


Q ss_pred             EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      |+|++++|++++.|++|++||+.+++....+.. ...+......+.++++.+++++.|+.+++||...++   ....+.+
T Consensus       247 ~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~~g  322 (611)
T 1nr0_A          247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVRYG  322 (611)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEECC
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC-CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEEcC
Confidence            999999999999999999999988743222211 122344566777899999999999999999998765   5566789


Q ss_pred             CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      |...|++++|+|+    +++|++++.|++|++||+.+++...
T Consensus       323 h~~~v~~l~~spd----g~~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          323 HNKAITALSSSAD----GKTLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             CSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCCEEEEEEeCC----CCEEEEEeCCCcEEEEECCCCceee
Confidence            9999999999999    9999999999999999999876544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.2e-45  Score=304.88  Aligned_cols=296  Identities=16%  Similarity=0.154  Sum_probs=245.6

Q ss_pred             CCCCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCce------eeEEeccCceeeEEEEEe------C--
Q 018591            1 MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLR------MFTKFGHGDGSVKAVVTV------G--   66 (353)
Q Consensus         1 m~~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~~~------~--   66 (353)
                      |+..-.+....+.+|.++|++++|++++|++|+.||.|++||+.+++      .+..+..|...|.+++|+      +  
T Consensus         1 m~~~~~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~   80 (397)
T 1sq9_A            1 MSKVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE   80 (397)
T ss_dssp             --CEEEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             CchhhhhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcc
Confidence            44444566788999999999999999999999999999999999887      788888999999999997      4  


Q ss_pred             -CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec-----CCceEEEEEe---
Q 018591           67 -NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH-----ADSISCLTVY---  137 (353)
Q Consensus        67 -~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~---  137 (353)
                       .+|++++.||.|++|+++++........                           ..+..|     ...|.+++|+   
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIF---------------------------EKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEE---------------------------EEECCSCTTGGGSCEEEEEEECCC
T ss_pred             ccEEEEEcCCCCEEEEEccCCcccccccc---------------------------eeecccccccCCCcEEEEEEeecc
Confidence             6899999999999999987763111111                           122256     5899999999   


Q ss_pred             -C--Ce-EEEecCCCcEEEEEcCC------ceeee-----ec-------cccCcceEEEEEeCC-eEEEEcCCCcEEEEe
Q 018591          138 -N--GL-IYSGSWDKTLKVWRVAD------LKCLE-----SI-------KAHDDAVNGLVASKG-IVYSASADGKIKAWG  194 (353)
Q Consensus       138 -~--~~-l~~~~~dg~v~iwd~~~------~~~~~-----~~-------~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd  194 (353)
                       +  .. |++++.||.|++||+++      ++.+.     .+       ..|...|.+++|+++ .+++++.||.|++||
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE  213 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEE
Confidence             7  77 99999999999999988      66666     66       448899999999433 999999999999999


Q ss_pred             CCCCCcccccceeeeec---c---CCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeeccc-------
Q 018591          195 KELGKSHCHSLKGILEG---H---KDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKA-------  258 (353)
Q Consensus       195 ~~~~~~~~~~~~~~~~~---~---~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~-------  258 (353)
                      +++.+     ....+..   |   ...+ .+++|+|++++|++++.|   |.|++||++++    +....+..       
T Consensus       214 ~~~~~-----~~~~~~~~~~h~~~~~~i-~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          214 LSTLR-----PLYNFESQHSMINNSNSI-RSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQA  283 (397)
T ss_dssp             TTTTE-----EEEEEECCC---CCCCCE-EEEEECSSTTEEEEEEEETTEEEEEEEETTTC----CEEEEECBC------
T ss_pred             CCCCc-----eeEEEeccccccccCCcc-ceEEECCCCCEEEEEecCCCCceEEEEECCCC----cccceeccCcccccc
Confidence            99876     6667776   6   5555 999999999999999999   99999999987    44455555       


Q ss_pred             ------cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEecccc------CC---------------CcCeEEE
Q 018591          259 ------HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAIT------GH---------------EGPVKCL  309 (353)
Q Consensus       259 ------~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~h---------------~~~v~~~  309 (353)
                            |...+.++.++  +++|++++.||.|++||+.+++   .+..+.      +|               ...|+++
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~  360 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV  360 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc---eeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence                  78888888775  8899999999999999999877   555566      67               9999999


Q ss_pred             EeecCCCCCC----------eEEEEccCCCeEEEEEcCCCC
Q 018591          310 QASPNAVGGG----------FLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       310 ~~~~~~~~~~----------~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +|+|+    +          ++|++++.||.|++|++++++
T Consensus       361 ~~~~~----g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          361 KFLKK----GWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEECT----TTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             Eeccc----cccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99999    7          799999999999999998763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-44  Score=289.06  Aligned_cols=293  Identities=25%  Similarity=0.354  Sum_probs=248.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      ....++++++.+|.++|++++|. +++|++|+.||.|++||+.+++....+..|...|.+++|+  ++++++++.||.++
T Consensus         5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            5 FTGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            34568899999999999999995 8899999999999999999999999999999999999998  88999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      +|++.......                             ....+.+|...|.++.|+++.+++++.||.|++||  .++
T Consensus        85 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~  133 (313)
T 3odt_A           85 GVPLFATSGED-----------------------------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGS  133 (313)
T ss_dssp             EEETTCCTTSC-----------------------------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTE
T ss_pred             EEEeeecCCCC-----------------------------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCc
Confidence            99997653110                             12223379999999999889999999999999999  677


Q ss_pred             eeeeccccCcceEEEEE-e--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeec-cCCceeeEEEEcCCCCeEEeecCC
Q 018591          160 CLESIKAHDDAVNGLVA-S--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~-~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ....+..|...+.++.+ +  ++.+++++.||.|++||..  +     ....+.. +... +.+++|+|++. +++++.|
T Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~-----~~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~d  204 (313)
T 3odt_A          134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--K-----VIKTFSGIHNDV-VRHLAVVDDGH-FISCSND  204 (313)
T ss_dssp             EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--E-----EEEEECSSCSSC-EEEEEEEETTE-EEEEETT
T ss_pred             EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--c-----eEEEEeccCccc-EEEEEEcCCCe-EEEccCC
Confidence            88888899999999998 3  4599999999999999933  2     4455565 4444 59999999998 9999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      |.|++||++++    +....+..|...+.++.++ ...|++++.||.|++||+.+++   .+..+..|...|.+++|+|+
T Consensus       205 g~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          205 GLIKLVDMHTG----DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             SEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEEEECTT
T ss_pred             CeEEEEECCch----hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEEEEccC
Confidence            99999999987    5566677888899998886 2279999999999999999887   66677889999999999999


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcCCCCCcccccC
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                          ++ +++++.||.|++|++++++.....+.
T Consensus       278 ----~~-~~~~~~dg~i~iw~~~~~~~~~~~~~  305 (313)
T 3odt_A          278 ----GD-IIVGSSDNLVRIFSQEKSRWASEDEI  305 (313)
T ss_dssp             ----SC-EEEEETTSCEEEEESCGGGCCC----
T ss_pred             ----CC-EEEEeCCCcEEEEeCCCCceeehhhh
Confidence                77 66789999999999998887766553

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-43  Score=303.83  Aligned_cols=287  Identities=22%  Similarity=0.368  Sum_probs=252.3

Q ss_pred             ceeeeeeCccCc-eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcc
Q 018591            7 RSLAVLSGHVGS-VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus         7 ~~~~~l~~h~~~-v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~   84 (353)
                      .....+.+|.+. +.++.+++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+ +..+++|+.||+|++||++
T Consensus       112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred             cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence            356789999988 57889999999999999999999999999999999999999999998 5699999999999999998


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCcee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      ++.     .+                           ..+.+|...|.++++.+    .++++|+.||.|++||++++..
T Consensus       192 ~~~-----~~---------------------------~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~  239 (464)
T 3v7d_B          192 KGC-----CT---------------------------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS  239 (464)
T ss_dssp             TTE-----EE---------------------------EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred             CCc-----EE---------------------------EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence            765     22                           22337999999999984    7899999999999999987652


Q ss_pred             -----------------------eeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591          161 -----------------------LESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL  217 (353)
Q Consensus       161 -----------------------~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (353)
                                             +..+.+|...+.++...++.+++++.||.|++||+++++     ....+.+|...+ 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v-  313 (464)
T 3v7d_B          240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-----CLYILSGHTDRI-  313 (464)
T ss_dssp             C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-
T ss_pred             cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCCCCE-
Confidence                                   456678899999998888999999999999999999887     677788888776 


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG  297 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  297 (353)
                      .+++|+|+++++++++.||.|++||++++    +....+.+|...+.++.+++++|++++.||.|++||+.++...   .
T Consensus       314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---~  386 (464)
T 3v7d_B          314 YSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK---F  386 (464)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE---E
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee---e
Confidence            99999999999999999999999999988    5667778899999999999999999999999999999987632   2


Q ss_pred             cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      .. .|...+..++|+|+    +++|++++ ||.|++||+++++.+..
T Consensus       387 ~~-~~~~~~~~~~~~~~----~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          387 SY-HHTNLSAITTFYVS----DNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             EE-ECTTCCCEEEEEEC----SSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             ee-cCCCCccEEEEEeC----CCEEEEec-CCeEEEEECCCCcEEeh
Confidence            22 36677888999999    99999998 89999999999988764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.6e-42  Score=310.45  Aligned_cols=284  Identities=25%  Similarity=0.386  Sum_probs=226.8

Q ss_pred             ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC-----ceeeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591            7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD-----LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~-----~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      +....+++|++.|++|+|+   +++|+||+.||+|++||+.+     +.....+.+|...|.+++|+  +++|++|+.||
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4456799999999999996   57999999999999999875     34567789999999999998  78999999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd  154 (353)
                      +|++||+.++.     .                           .+.+.+|...|.+++|++  .+|++|+.|+.|++||
T Consensus       453 ~v~vwd~~~~~-----~---------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd  500 (694)
T 3dm0_A          453 ELRLWDLAAGV-----S---------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN  500 (694)
T ss_dssp             EEEEEETTTTE-----E---------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEEEEECCCCc-----c---------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            99999998765     1                           223348999999999999  7999999999999999


Q ss_pred             cCCceeeee---ccccCcceEEEEEeCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          155 VADLKCLES---IKAHDDAVNGLVASKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       155 ~~~~~~~~~---~~~~~~~v~~i~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      .........   ..+|...|.+++|+++    .+++++.|++|++||+++.+     +...+.+|...+ .+++|+|+++
T Consensus       501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~~~~~h~~~v-~~v~~spdg~  574 (694)
T 3dm0_A          501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTGYV-STVAVSPDGS  574 (694)
T ss_dssp             TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEECTTSS
T ss_pred             CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEEEEcCCCCCE-EEEEEeCCCC
Confidence            865433322   2568899999999443    79999999999999999887     677888888776 9999999999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEecc-------
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGA-------  298 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------  298 (353)
                      +|++++.||.|++||+.++.    ....+.. ...+.++.+  ++.++++++ ++.|++||+++++....+..       
T Consensus       575 ~l~sg~~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~  648 (694)
T 3dm0_A          575 LCASGGKDGVVLLWDLAEGK----KLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE  648 (694)
T ss_dssp             EEEEEETTSBCEEEETTTTE----EEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----
T ss_pred             EEEEEeCCCeEEEEECCCCc----eEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc
Confidence            99999999999999999873    3333332 344656655  466666654 56699999998763322211       


Q ss_pred             ---------ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          299 ---------ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       299 ---------~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                               ...+...+++++|+|+    +++|++|+.||.|++|++..
T Consensus       649 ~~~~~~~~~~~~~~~~~~~l~~spd----g~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          649 KADNSGPAATKRKVIYCTSLNWSAD----GSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             ------------CCCCEEEEEECTT----SSEEEEEETTSEEEEEEC--
T ss_pred             cccccccccCCceeEEeeeEEEcCC----CCEEEEEcCCCeEEEEeccC
Confidence                     0011224789999999    99999999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-42  Score=304.92  Aligned_cols=276  Identities=28%  Similarity=0.430  Sum_probs=239.1

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      +++.+..+.+|..+|++++|+  +++|++++.||.|++||.. ++.+..+..|...|.+++|+  +++|++++.||.|++
T Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~  370 (577)
T 2ymu_A          292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  370 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            467788899999999999996  8899999999999999975 45567788899999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      |+.....      +                           ..+.+|...|.+++|+|  .+|++++.|+.|++||. ++
T Consensus       371 ~~~~~~~------~---------------------------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~  416 (577)
T 2ymu_A          371 WNRNGQL------L---------------------------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  416 (577)
T ss_dssp             EETTCCE------E---------------------------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TC
T ss_pred             EcCCCCE------E---------------------------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CC
Confidence            9964321      1                           12237899999999998  78999999999999995 67


Q ss_pred             eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +.+..+.+|...|++++|++  ..+++++.|+.|++||... +     ....+.+|...+ .+++|+|++++|++++.|+
T Consensus       417 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~~~v-~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSSSV-RGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCSSCE-EEEEECTTSCEEEEEETTS
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCCCCE-EEEEEcCCCCEEEEEeCCC
Confidence            88888999999999999943  3899999999999999753 3     566778888776 9999999999999999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .|++||...     +....+.+|...|.++++  ++++|++++.||.|++||.. ++   .+..+.+|.+.|++++|+||
T Consensus       490 ~i~iw~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~---~~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          490 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---LLQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             EEEEEETTS-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC---EEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEcCCC-----CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC---EEEEEcCCCCCEEEEEEcCC
Confidence            999999643     455667788888888877  48899999999999999964 44   67778899999999999999


Q ss_pred             CCCCCeEEEEccCCCeEEEEE
Q 018591          315 AVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~  335 (353)
                          +++|+|++.|++|++||
T Consensus       561 ----g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          561 ----GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             ----SSCEEEEETTSCEEEEC
T ss_pred             ----CCEEEEEeCCCEEEEeC
Confidence                99999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.6e-43  Score=282.08  Aligned_cols=253  Identities=22%  Similarity=0.267  Sum_probs=214.9

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      +..+++.+|...|.+++|+  +.+|++++.||+|++||++++.     .                           ...+
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----~---------------------------~~~~   51 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----E---------------------------VRSI   51 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----E---------------------------EEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----e---------------------------eEEe
Confidence            4567788999999999998  8899999999999999998765     2                           1223


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCc
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      ..|..+|.++.|++  ++|++|+.|+.|++||+++++++..+.+|...|.+++|+++  ++++++.|++|++||++++. 
T Consensus        52 ~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-  130 (304)
T 2ynn_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-  130 (304)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-
T ss_pred             eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-
Confidence            37889999999998  89999999999999999999999999999999999999443  89999999999999998764 


Q ss_pred             ccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE----cCcEEEE
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL----VGEFLCS  275 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~  275 (353)
                         .+...+.+|...+ .+++|+| ++.+|++|+.|+.|++||++........   ...+...+..+.+    ++.+|++
T Consensus       131 ---~~~~~~~~h~~~v-~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s  203 (304)
T 2ynn_A          131 ---ALEQTFEGHEHFV-MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMIT  203 (304)
T ss_dssp             ---EEEEEECCCCSCE-EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEE
T ss_pred             ---chhhhhcccCCcE-EEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEE
Confidence               2456677888776 9999999 6789999999999999999876432222   2234445555544    4679999


Q ss_pred             ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      |+.|+.|++||+++++   .+..+.+|...|.+++|+|+    +.+|++|+.||+|++||+.+++......
T Consensus       204 ~s~D~~i~iWd~~~~~---~~~~~~~h~~~v~~~~~~p~----~~~l~s~s~Dg~i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKS---CVATLEGHMSNVSFAVFHPT----LPIIISGSEDGTLKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             EETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSS----SSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EcCCCeEEEEeCCCCc---cceeeCCCCCCEEEEEECCC----CCEEEEEcCCCeEEEEECCCCceeeecc
Confidence            9999999999999877   67788999999999999999    9999999999999999999988766554

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-42  Score=286.17  Aligned_cols=287  Identities=16%  Similarity=0.218  Sum_probs=239.9

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      .....|.+|.++|++++|+  +++|++|+.||.|++||+.+++.+..+..|...|.+++|+  +++|++++.||.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            3445689999999999996  8899999999999999999999999999999999999998  78999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC-----CcEEEEEc
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD-----KTLKVWRV  155 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d-----g~v~iwd~  155 (353)
                      +++++     .+..+                            .+...+.++.|++  ..+++++.+     +.|++||+
T Consensus       103 ~~~~~-----~~~~~----------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B          103 VSNGQ-----CVATW----------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             TTTCC-----EEEEE----------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             CCCCc-----EEEEe----------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence            98775     22111                            3778899999999  889999988     99999999


Q ss_pred             CCce-----------eeeeccccCc--ceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591          156 ADLK-----------CLESIKAHDD--AVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       156 ~~~~-----------~~~~~~~~~~--~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      ....           ....+..|..  .+.+++|++  ..+++++.||.|++||+++..    .....+..|...+ .++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v-~~~  224 (369)
T 3zwl_B          150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVDSIDLHEKSI-SDM  224 (369)
T ss_dssp             EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEEEEECCSSCE-EEE
T ss_pred             cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEEEEecCCCce-eEE
Confidence            7653           2334445555  899999933  489999999999999999832    2667777777766 999


Q ss_pred             EEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCC--------------eEEE
Q 018591          221 VVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADK--------------SIGI  284 (353)
Q Consensus       221 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg--------------~i~i  284 (353)
                      +|+|++++|++++.|+.|++||+++...    ...+. +...+.++  .++++++++++.++              .+++
T Consensus       225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  299 (369)
T 3zwl_B          225 QFSPDLTYFITSSRDTNSFLVDVSTLQV----LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF  299 (369)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCE----EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred             EECCCCCEEEEecCCceEEEEECCCCce----eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence            9999999999999999999999998743    22222 34445444  45689999999888              8999


Q ss_pred             EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      ||..+++   .+..+.+|...|++++|+|+    +++|++++.||.|++|+++++....
T Consensus       300 ~d~~~~~---~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          300 YHKIFEE---EIGRVQGHFGPLNTVAISPQ----GTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             EETTTCC---EEEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             EecCCCc---chhheecccCcEEEEEECCC----CCEEEEEcCCCeEEEEECccccchh
Confidence            9999887   66677899999999999999    9999999999999999998765433

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.9e-43  Score=291.02  Aligned_cols=291  Identities=16%  Similarity=0.141  Sum_probs=230.1

Q ss_pred             CCCceeeeeeCccCceEEEEEC--C-cEEEEEeCCCcEEEEeCCCceeeEEec--cCceeeEEEEEe---CCEEEEecCC
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--G-EFILSASQGKDIIVWQQPDLRMFTKFG--HGDGSVKAVVTV---GNKVFTAHQD   75 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~-~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~s~~~d   75 (353)
                      ++.+....+.+|.+.|++++|+  + ++|++|+.||.|++||+.+++....+.  +|...|.+++|+   +++|++++.|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            4567788999999999999996  5 799999999999999999888887775  699999999997   4789999999


Q ss_pred             CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEE
Q 018591           76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVW  153 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iw  153 (353)
                      +.|++||++...   .......                           .+|...|.+++|++  ..+++|+.|+.|++|
T Consensus       141 ~~i~iwd~~~~~---~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          141 GATTLRDFSGSV---IQVFAKT---------------------------DSWDYWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             TEEEEEETTSCE---EEEEECC---------------------------CCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             CEEEEEECCCCc---eEEEecc---------------------------CCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            999999998532   1111100                           14668899999999  899999999999999


Q ss_pred             EcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeE
Q 018591          154 RVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWV  229 (353)
Q Consensus       154 d~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  229 (353)
                      |+ +++++..+..|...|.+++|+++   .+++++.|+.|++||+++.+.. ..+...+ .|...+ .+++|+| ++++|
T Consensus       191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-~~~~~v-~~~~~s~~~~~~l  266 (383)
T 3ei3_B          191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM-PHEKPV-NAAYFNPTDSTKL  266 (383)
T ss_dssp             ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE-ECSSCE-EEEEECTTTSCEE
T ss_pred             EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe-cCCCce-EEEEEcCCCCCEE
Confidence            99 57888889999999999999443   7999999999999999974311 1133333 466655 9999999 99999


Q ss_pred             EeecCCCcEEEeeccccccceeeeeec---cccc----------eeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591          230 YGGGSDGFVMGWEGNVEIVRWKLACET---KAHE----------MAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~----------~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                      ++++.|+.|++||+++...........   ..|.          ..+  .++++++++  +|+.||.|++||+.+++   
T Consensus       267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~---  341 (383)
T 3ei3_B          267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG---  341 (383)
T ss_dssp             EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC---
T ss_pred             EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc---
Confidence            999999999999998874332222111   0111          122  333445666  88899999999999887   


Q ss_pred             EeccccC--CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          295 RVGAITG--HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       295 ~~~~~~~--h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .+..+.+  |...+..++|+|+    +++|++++ ||.|++|++++
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~----g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPT----GDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTT----SSEEEEEE-TTEEEEEECC-
T ss_pred             eeeeecCCCCCceEEEEEEecC----ccEEEEec-CCcEEEEecCC
Confidence            4555555  5677888899999    99999997 99999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-41  Score=297.17  Aligned_cols=284  Identities=27%  Similarity=0.428  Sum_probs=244.5

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      +++.+..+.+|..+|++++|+  +++|++++.|+.|++||. +++.+..+.+|...|.+++|+  +..+++++.||.|++
T Consensus       251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~  329 (577)
T 2ymu_A          251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  329 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence            567888999999999999996  889999999999999996 567888899999999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||.....                                 ...+.+|...|.+++|+|  ..+++++.|+.|++||. ++
T Consensus       330 w~~~~~~---------------------------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~  375 (577)
T 2ymu_A          330 WNRNGQH---------------------------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG  375 (577)
T ss_dssp             EETTSCE---------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TC
T ss_pred             EeCCCCe---------------------------------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CC
Confidence            9986543                                 112237889999999999  79999999999999995 67


Q ss_pred             eeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +.+..+.+|...|.+++|+++  ++++++.|+.|++||.. ++     ....+.+|...+ .+++|+|++++|++++.|+
T Consensus       376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~-----~~~~~~~~~~~v-~~~~~s~d~~~l~~~~~d~  448 (577)
T 2ymu_A          376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----LLQTLTGHSSSV-WGVAFSPDDQTIASASDDK  448 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CC-----EEEEEECCSSCE-EEEEECTTSSEEEEEETTS
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CC-----EEEEecCCCCCe-EEEEECCCCCEEEEEcCCC
Confidence            888889999999999999443  89999999999999964 33     567778888776 9999999999999999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .|++||...     +....+.+|...+.++++  ++++|++++.|+.|++||.. ++   .+..+.+|...|++++|+|+
T Consensus       449 ~v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~---~~~~~~~h~~~v~~l~~s~d  519 (577)
T 2ymu_A          449 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---LLQTLTGHSSSVRGVAFSPD  519 (577)
T ss_dssp             EEEEEETTS-----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC---EEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEECCC-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC---EEEEEeCCCCCEEEEEEcCC
Confidence            999999754     345566778888887776  58899999999999999964 44   56778899999999999999


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                          +++|++++.||.|++||. +++.+..
T Consensus       520 ----g~~l~s~~~dg~v~lwd~-~~~~~~~  544 (577)
T 2ymu_A          520 ----GQTIASASDDKTVKLWNR-NGQLLQT  544 (577)
T ss_dssp             ----SSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred             ----CCEEEEEECcCEEEEEeC-CCCEEEE
Confidence                999999999999999996 4444443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.4e-43  Score=296.27  Aligned_cols=296  Identities=15%  Similarity=0.126  Sum_probs=219.1

Q ss_pred             CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceee--EEeccCceeeEEEEEe---CCEEEEecCC
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMF--TKFGHGDGSVKAVVTV---GNKVFTAHQD   75 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~---~~~l~s~~~d   75 (353)
                      ...+......+|...|+||+|+   +++||+|+.||.|+|||+.+++..  ..+.+|.+.|.+|+|+   +++|++++.|
T Consensus       107 ~~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             TTTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             cceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            4456667788999999999996   579999999999999999877644  4456899999999996   6799999999


Q ss_pred             CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEE
Q 018591           76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVW  153 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iw  153 (353)
                      |+|++||++++..   ......                           ..+...+.+++|++  .+|++|+.||.|++|
T Consensus       187 ~~v~iwd~~~~~~---~~~~~~---------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          187 GTTRLQDFKGNIL---RVFASS---------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             SCEEEEETTSCEE---EEEECC---------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             CEEEEeeccCCce---eEEecc---------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            9999999976531   111100                           03445678899998  899999999999999


Q ss_pred             EcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          154 RVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       154 d~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      |++ ++.+..+.+|...|++++|++.   ++++++.|+.|++||+++.+..  .......+|...+ .+++|+|++++|+
T Consensus       237 d~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~--~~~~~~~~h~~~v-~~~~~spdg~~l~  312 (435)
T 4e54_B          237 NMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK--ASFLYSLPHRHPV-NAACFSPDGARLL  312 (435)
T ss_dssp             ESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS--SCCSBCCBCSSCE-EECCBCTTSSEEE
T ss_pred             ccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc--ceEEEeeeccccc-cceeECCCCCeeE
Confidence            985 5677888999999999999432   7889999999999999876521  1122334566655 9999999999999


Q ss_pred             eecCCCcEEEeeccccccceeeeeeccccc--eeE--EEEEEcCcEEEEe------------cCCCeEEEEecCCCcceE
Q 018591          231 GGGSDGFVMGWEGNVEIVRWKLACETKAHE--MAV--LCVCLVGEFLCSG------------SADKSIGIWKREAFGKLC  294 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v--~~~~~~~~~l~~~------------~~dg~i~iw~~~~~~~~~  294 (353)
                      +++.||.|++||+..+............+.  ...  ..+.+++.+++++            ..++.|++||..+++.  
T Consensus       313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--  390 (435)
T 4e54_B          313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--  390 (435)
T ss_dssp             EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--
T ss_pred             EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--
Confidence            999999999999988643322221111100  001  1122223333333            3456899999999873  


Q ss_pred             Eecc-ccCCCcCeEEE-EeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          295 RVGA-ITGHEGPVKCL-QASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       295 ~~~~-~~~h~~~v~~~-~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                       +.. ..+|...|.++ +|+|+    +++|++|+ |+.|+||++++++.
T Consensus       391 -~~~l~~~~~~~v~s~~~fspd----g~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          391 -MCQLYDPESSGISSLNEFNPM----GDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             -EEEECCSSCCCCCCEEEECTT----SSCEEEEC-SSEEEECCCC----
T ss_pred             -EEEEeCCCCCcEEEEEEECCC----CCEEEEEc-CCcEEEEECCcCee
Confidence             333 35788889887 69999    99999886 78999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.1e-42  Score=285.38  Aligned_cols=293  Identities=13%  Similarity=0.120  Sum_probs=233.8

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~   84 (353)
                      .+..|.++|++++|+  +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+  +++|++++.||.|++||++
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            456699999999996  8899999999999999999987  888999999999999998  8899999999999999997


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee--
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC--  160 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~--  160 (353)
                      +++...                              ...+..|...|.+++|++  .++++++.|+.|++||++.++.  
T Consensus        83 ~~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~  132 (372)
T 1k8k_C           83 GRTWKP------------------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW  132 (372)
T ss_dssp             TTEEEE------------------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             CCeeee------------------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence            764110                              011126889999999998  7999999999999999987652  


Q ss_pred             --eeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCc-------------ccccceeeeeccCCceeeEEEEc
Q 018591          161 --LESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKS-------------HCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       161 --~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                        ......|...|.+++|.+  ..+++++.||.|++||++....             ........+..|...+ .+++|+
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~  211 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV-HGVCFS  211 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE-EEEEEC
T ss_pred             eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE-EEEEEC
Confidence              333467899999999943  3899999999999999752210             0112556666777665 999999


Q ss_pred             CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCC--Ccc-------
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREA--FGK-------  292 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~--~~~-------  292 (353)
                      |++++|++++.|+.|++||++++    +....+..|...+.++.+  ++.++++| .|+.|++|++.+  ++-       
T Consensus       212 ~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~  286 (372)
T 1k8k_C          212 ANGSRVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLD  286 (372)
T ss_dssp             SSSSEEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC----ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccC
Confidence            99999999999999999999987    455556677777776665  57777777 999999999987  310       


Q ss_pred             ----------------------eEEe------ccc-cCCCcCeEEEEeecCCCCCC---eEEEEccCCCeEEEEEcCCCC
Q 018591          293 ----------------------LCRV------GAI-TGHEGPVKCLQASPNAVGGG---FLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       293 ----------------------~~~~------~~~-~~h~~~v~~~~~~~~~~~~~---~~l~s~~~dg~i~iw~~~~~~  340 (353)
                                            ....      ..+ .+|..+|++++|.+..   +   .+|++++.||.|++|++.+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          287 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGG---KAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEEST---TTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCC---CcceeeEEEecCCCceEEEEecChh
Confidence                                  0000      223 4899999999977541   5   899999999999999998765


Q ss_pred             Cc
Q 018591          341 ST  342 (353)
Q Consensus       341 ~~  342 (353)
                      .+
T Consensus       364 ~~  365 (372)
T 1k8k_C          364 SA  365 (372)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-42  Score=289.05  Aligned_cols=249  Identities=25%  Similarity=0.396  Sum_probs=221.7

Q ss_pred             eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      ...+.+|..+|++++|+  +.+|++|+.||+|++||+.++..                                ...+.+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------------------------------~~~l~~  148 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------------------------------ERTLKG  148 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------------------------------CEEECC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------------------------EEEEec
Confidence            45677899999999998  78999999999999999987751                                223348


Q ss_pred             cCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccc
Q 018591          127 HADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      |...|.+++|++  .+|++|+.|+.|++||+.+++++..+.+|...|.+++|.+  +.+++++.|++|++||++++.   
T Consensus       149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~---  225 (410)
T 1vyh_C          149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---  225 (410)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---
Confidence            999999999998  7999999999999999999999999999999999999943  489999999999999999987   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-------------
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-------------  269 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------  269 (353)
                        ....+.+|...+ .++.++|++.++++++.|+.|++||+.++    .....+..|...+.++.++             
T Consensus       226 --~~~~~~~h~~~v-~~~~~~~~g~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  298 (410)
T 1vyh_C          226 --CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATG  298 (410)
T ss_dssp             --EEEEEECCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred             --EEEEEeCCCccE-EEEEECCCCCEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence              677888888876 99999999999999999999999999887    4556677888888888775             


Q ss_pred             ---------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          270 ---------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       270 ---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                               +.+|++|+.|+.|++||+++++   .+..+.+|...|++++|+|+    +++|++|+.||.|++||+.+++
T Consensus       299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~----g~~l~s~s~D~~i~vwd~~~~~  371 (410)
T 1vyh_C          299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSG----GKFILSCADDKTLRVWDYKNKR  371 (410)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSS----SSCEEEEETTTEEEEECCTTSC
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCc---eEEEEECCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCc
Confidence                     4589999999999999999877   67778899999999999999    9999999999999999999888


Q ss_pred             Cccccc
Q 018591          341 STSDSE  346 (353)
Q Consensus       341 ~~~~~~  346 (353)
                      ++....
T Consensus       372 ~~~~~~  377 (410)
T 1vyh_C          372 CMKTLN  377 (410)
T ss_dssp             CCEEEE
T ss_pred             eEEEEc
Confidence            776654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.6e-42  Score=277.58  Aligned_cols=254  Identities=23%  Similarity=0.302  Sum_probs=218.8

Q ss_pred             ceeeEEeccCceeeEEEEEe------CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccc
Q 018591           46 LRMFTKFGHGDGSVKAVVTV------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRH  119 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (353)
                      +.......+|.+.|.+++|+      +.+|++|+.|++|++|+++.+...   .                          
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---~--------------------------   72 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---L--------------------------   72 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---E--------------------------
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---e--------------------------
Confidence            34456678899999999995      458999999999999999765411   1                          


Q ss_pred             ceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeC
Q 018591          120 HKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGK  195 (353)
Q Consensus       120 ~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~  195 (353)
                       ...+.+|...|.++++++  ..+++++.|+.|++||+.+++++..+..|...+.+++|++  ..+++++.||.|++||+
T Consensus        73 -~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           73 -QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             -EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             -eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence             112338999999999999  7899999999999999999999999999999999999944  39999999999999999


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFL  273 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l  273 (353)
                      ++++     ....+..+...+ .+++|+|++++|++++.||.|++||++++    +....+.+|...+.++.+  ++++|
T Consensus       152 ~~~~-----~~~~~~~~~~~v-~~~~~spdg~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~~~l  221 (321)
T 3ow8_A          152 ESGK-----KEYSLDTRGKFI-LSIAYSPDGKYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLL  221 (321)
T ss_dssp             TTCS-----EEEEEECSSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTSCEE
T ss_pred             CCCc-----eeEEecCCCceE-EEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCCCEE
Confidence            9887     555666666655 99999999999999999999999999987    566667788888877776  48899


Q ss_pred             EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ++|+.|+.|++||+++++   .+..+.+|...|.+++|+|+    +.+|++++.||+|++||+.+++++.+..
T Consensus       222 ~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~sp~----~~~l~s~s~D~~v~iwd~~~~~~~~~~~  287 (321)
T 3ow8_A          222 VTASDDGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPD----DTHFVSSSSDKSVKVWDVGTRTCVHTFF  287 (321)
T ss_dssp             EEECTTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEcCCCeEEEEECCCcc---eeEEEcCCCCceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCEEEEEEc
Confidence            999999999999999877   56678899999999999999    9999999999999999999988776553

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-41  Score=282.34  Aligned_cols=287  Identities=17%  Similarity=0.240  Sum_probs=232.3

Q ss_pred             eeeCccCc--eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591           11 VLSGHVGS--VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        11 ~l~~h~~~--v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~   85 (353)
                      ...+|.+.  +.+++|+++.+++++.||.|++||+.+++....+.. |...|.+++|+  +++|++++.||.|++||+++
T Consensus        86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence            33467655  556778888889999999999999999998887765 78999999998  78999999999999999987


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcC-Cceeeeec
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVA-DLKCLESI  164 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~  164 (353)
                      ++     .+                           ..+.+|...|.++.|+++.+++++.||.|++||++ ....+..+
T Consensus       166 ~~-----~~---------------------------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  213 (401)
T 4aez_A          166 QT-----KL---------------------------RTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL  213 (401)
T ss_dssp             CC-----EE---------------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             Ce-----EE---------------------------EEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE
Confidence            65     22                           22237999999999999999999999999999998 56678888


Q ss_pred             cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeec--CCCcEE
Q 018591          165 KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGG--SDGFVM  239 (353)
Q Consensus       165 ~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~  239 (353)
                      .+|...|.+++|++  ..+++++.|+.|++||+++.+     ....+..|...+ .+++|+|++. ++++++  .|+.|+
T Consensus       214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~v-~~~~~~p~~~~ll~~~~gs~d~~i~  287 (401)
T 4aez_A          214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-----PKFTKTNHNAAV-KAVAWCPWQSNLLATGGGTMDKQIH  287 (401)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-----EEEEECCCSSCC-CEEEECTTSTTEEEEECCTTTCEEE
T ss_pred             cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-----ccEEecCCcceE-EEEEECCCCCCEEEEecCCCCCEEE
Confidence            89999999999943  389999999999999999876     666677777765 9999999765 555544  799999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEE--cCcEEEE--ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCS--GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA  315 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  315 (353)
                      +||+.++.    ....+. +...+.++.+  +++++++  |+.||.|++||+.+++. .....+.+|...|.+++|+|+ 
T Consensus       288 i~d~~~~~----~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~d-  360 (401)
T 4aez_A          288 FWNAATGA----RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPD-  360 (401)
T ss_dssp             EEETTTCC----EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTT-
T ss_pred             EEECCCCC----EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCC-
Confidence            99999873    333332 3455666666  5888888  55899999999988542 244557789999999999999 


Q ss_pred             CCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          316 VGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                         +.+|++++.||.|++|++.+++.+...
T Consensus       361 ---g~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          361 ---GRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             ---SSEEEEECTTSEEEEEECCC-------
T ss_pred             ---CCEEEEEeCCCcEEEEECCCCcccccc
Confidence               999999999999999999998877654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-41  Score=282.49  Aligned_cols=289  Identities=12%  Similarity=0.164  Sum_probs=227.7

Q ss_pred             eeeCccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCceeeEEecc-----CceeeEEEEEeC------CEEEEec
Q 018591           11 VLSGHVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRMFTKFGH-----GDGSVKAVVTVG------NKVFTAH   73 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~------~~l~s~~   73 (353)
                      ...+|.++|++++|+      ...+++++.++.|++||+.+++.+..+..     |...|.+++|+.      .+|++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            344899999999997      34677777778999999998887776654     457899999982      3899999


Q ss_pred             CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591           74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL  150 (353)
Q Consensus        74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v  150 (353)
                      .||.|++||+++++     .+                           ..+.+|...|.+++|+|   .+|++++.||.|
T Consensus        93 ~dg~i~v~d~~~~~-----~~---------------------------~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i  140 (366)
T 3k26_A           93 SRGIIRIINPITMQ-----CI---------------------------KHYVGHGNAINELKFHPRDPNLLLSVSKDHAL  140 (366)
T ss_dssp             TTCEEEEECTTTCC-----EE---------------------------EEEESCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             CCCEEEEEEchhce-----Ee---------------------------eeecCCCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence            99999999998765     21                           22237999999999987   789999999999


Q ss_pred             EEEEcCCceeeeec---cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccc----------------------
Q 018591          151 KVWRVADLKCLESI---KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCH----------------------  203 (353)
Q Consensus       151 ~iwd~~~~~~~~~~---~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~----------------------  203 (353)
                      ++||+++++.+..+   ..|...|.+++|++  ..+++++.||.|++||+++++....                      
T Consensus       141 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          141 RLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             EEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             EEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence            99999999988887   78999999999943  4899999999999999987652100                      


Q ss_pred             -cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc----------eeeeeeccccceeEEE--EEEc-
Q 018591          204 -SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR----------WKLACETKAHEMAVLC--VCLV-  269 (353)
Q Consensus       204 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~--~~~~-  269 (353)
                       ........|...+ .+++|+  ++++++++.|+.|++||+......          ......+..|...+.+  ++++ 
T Consensus       221 ~~~~~~~~~~~~~v-~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  297 (366)
T 3k26_A          221 FPDFSTRDIHRNYV-DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF  297 (366)
T ss_dssp             CCSEEECSSCSSCC-CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred             cCccccccCCcceE-EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence             0011222365555 999998  679999999999999999876331          1234445555555544  4556 


Q ss_pred             -CcEEEEecCCCeEEEEecCCCcceE-EeccccCC--CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          270 -GEFLCSGSADKSIGIWKREAFGKLC-RVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       270 -~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                       +++|++|+.||.|++||+.+++... ....+.+|  ...|++++|+|+    +++|++++.||.|++||+.+
T Consensus       298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD----SSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT----SSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC----CCeEEEEeCCCEEEEEEecC
Confidence             8999999999999999999876332 33356666  789999999999    99999999999999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2e-41  Score=285.28  Aligned_cols=302  Identities=17%  Similarity=0.234  Sum_probs=234.0

Q ss_pred             CCCceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEec-------------cCceeeEEEEEe--
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFG-------------HGDGSVKAVVTV--   65 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~--   65 (353)
                      ...+....+.+|.++|++++|+   +++|++|+.||.|++||+.+++....+.             +|...|.+++|+  
T Consensus        31 ~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  110 (408)
T 4a11_B           31 ELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH  110 (408)
T ss_dssp             EECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred             ccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence            3456778899999999999995   6899999999999999998876554442             589999999997  


Q ss_pred             -CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----C
Q 018591           66 -GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----G  139 (353)
Q Consensus        66 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~  139 (353)
                       +.+|++++.||.|++||++++.     ....+                            .+...+.++.+.+     .
T Consensus       111 ~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~----------------------------~~~~~~~~~~~~~~~~~~~  157 (408)
T 4a11_B          111 DTGMFTSSSFDKTLKVWDTNTLQ-----TADVF----------------------------NFEETVYSHHMSPVSTKHC  157 (408)
T ss_dssp             CTTCEEEEETTSEEEEEETTTTE-----EEEEE----------------------------ECSSCEEEEEECSSCSSCC
T ss_pred             CCcEEEEEeCCCeEEEeeCCCCc-----cceec----------------------------cCCCceeeeEeecCCCCCc
Confidence             5689999999999999998765     11111                            4677888999987     3


Q ss_pred             eEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCccc-----------ccc
Q 018591          140 LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHC-----------HSL  205 (353)
Q Consensus       140 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~-----------~~~  205 (353)
                      ++++++.||.|++||+++++.+..+..|...|.+++|.++   .+++++.||.|++||++......           ...
T Consensus       158 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T 4a11_B          158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV  237 (408)
T ss_dssp             EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred             EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence            8999999999999999999999999999999999999443   58899999999999998765110           011


Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc--ceeEEEEEE-cCcEEEEecCCCeE
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EMAVLCVCL-VGEFLCSGSADKSI  282 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~-~~~~l~~~~~dg~i  282 (353)
                      ......|...+ .+++|+|++++|++++.||.|++||+.++.............  ......... .+..+++++.++.|
T Consensus       238 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  316 (408)
T 4a11_B          238 ESANTAHNGKV-NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTI  316 (408)
T ss_dssp             TTSSCSCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred             ccccccccCce-eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEE
Confidence            11224555555 999999999999999999999999999874332221111111  111122222 25677777889999


Q ss_pred             EEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          283 GIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       283 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ++||+.+++   .+..+.+|...|++++|+|+    +++|++++.||.|++|++.+.+.+...+
T Consensus       317 ~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          317 AVYTVYSGE---QITMLKGHYKTVDCCVFQSN----FQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             EEEETTTCC---EEEEECCCSSCEEEEEEETT----TTEEEEEETTSCEEEEEECC--------
T ss_pred             EEEECcCCc---ceeeeccCCCeEEEEEEcCC----CCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            999999887   67778899999999999999    9999999999999999999988776443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=281.67  Aligned_cols=290  Identities=16%  Similarity=0.141  Sum_probs=230.3

Q ss_pred             eeeeCccCceEEEEEC--C-cEEEEEeC---CCcEEEEeCCCceeeEEe-ccCceeeEEEEEe-----CCEEEEecCCCc
Q 018591           10 AVLSGHVGSVSSLALC--G-EFILSASQ---GKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-----GNKVFTAHQDSR   77 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~-~~l~s~~~---dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~-----~~~l~s~~~dg~   77 (353)
                      ..+++|.++|++++|+  + .++++|+.   ||.|++||+.+++..... ..|...|.+++|+     +++|++++.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4567899999999997  4 46667776   999999999988776543 3678899999997     288999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE------eC--CeEEEecCCCc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV------YN--GLIYSGSWDKT  149 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~--~~l~~~~~dg~  149 (353)
                      |++||++++..                               ....+.+|...|.++.|      ++  +.|++++.||.
T Consensus        92 i~iwd~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           92 LHIWNLEAPEM-------------------------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEECTTSCSS-------------------------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             EEEEeCCCCCc-------------------------------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            99999987641                               12223379999999966      44  69999999999


Q ss_pred             EEEEEcCCce-eeeeccccCc----ceEEEE----E--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceee
Q 018591          150 LKVWRVADLK-CLESIKAHDD----AVNGLV----A--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       150 v~iwd~~~~~-~~~~~~~~~~----~v~~i~----~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                      |++||+++++ ++..+..|.+    .+.+++    |  .+..+++++.||.|++||+++++     . .....+...+ .
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~-~~~~~~~~~v-~  213 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-----L-RWETNIKNGV-C  213 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-----E-EEEEECSSCE-E
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-----e-eeecCCCCce-E
Confidence            9999999876 6777765544    889998    4  33489999999999999999886     3 2334455554 9


Q ss_pred             EEEEcC---CCCeEEeecCCCcEEEeeccccccceee-eeeccccceeEEEEEEc--Cc-EEEEecCCCeEEEEecCCCc
Q 018591          219 SVVVSD---DGKWVYGGGSDGFVMGWEGNVEIVRWKL-ACETKAHEMAVLCVCLV--GE-FLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       219 ~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~iw~~~~~~  291 (353)
                      +++|+|   ++.++++++.||.|++||++........ ......|...+.++.++  ++ +|++++.||.|++||++.+.
T Consensus       214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          214 SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            999999   9999999999999999999887433222 11334788888888775  55 89999999999999998654


Q ss_pred             ce----------------EEeccccCCCcCeEEEEeecCCCCCCeEEE-EccCCCeEEEEEcCCCCC
Q 018591          292 KL----------------CRVGAITGHEGPVKCLQASPNAVGGGFLLY-SGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       292 ~~----------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~-s~~~dg~i~iw~~~~~~~  341 (353)
                      ..                ..+..+.+|..+|++++|+|+    +++|+ +++.||.|++|++.+.+.
T Consensus       294 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          294 QRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD----KRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS----STTEEEEEETTSEEEEEEECC---
T ss_pred             ccccccCCCCccccccccceeeccccCCCCeeEEEEcCC----CCeEEEEecCCCcEEEEECCCccc
Confidence            32                467778899999999999999    88888 899999999999987654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-41  Score=286.98  Aligned_cols=277  Identities=15%  Similarity=0.189  Sum_probs=233.5

Q ss_pred             eCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeC----CCce------eeEEecc----------CceeeEEEEEe--CC
Q 018591           13 SGHVGSVSSLALC--GE-FILSASQGKDIIVWQQ----PDLR------MFTKFGH----------GDGSVKAVVTV--GN   67 (353)
Q Consensus        13 ~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~----~~~~------~~~~~~~----------~~~~v~~~~~~--~~   67 (353)
                      ..|.++|++++|+  ++ +|++|+.||.|++||+    .+++      ....+..          |...|.+++|+  ++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            3466999999997  77 9999999999999999    8888      4555555          78899999998  78


Q ss_pred             EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec
Q 018591           68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS  145 (353)
Q Consensus        68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~  145 (353)
                      +|++++.||.|++||.. +.     .                           ...+.+|...|.+++|+|  .+|++++
T Consensus       122 ~l~~~~~dg~i~i~~~~-~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKT-GA-----L---------------------------LNVLNFHRAPIVSVKWNKDGTHIISMD  168 (425)
T ss_dssp             EEEEEETTSCEEEEETT-SC-----E---------------------------EEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEeCCCeEEEEeCC-CC-----e---------------------------eeeccCCCccEEEEEECCCCCEEEEEe
Confidence            99999999999999933 22     1                           122237899999999998  7899999


Q ss_pred             CCCcEEEEEcCCceeeeeccccCcc---------------eEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591          146 WDKTLKVWRVADLKCLESIKAHDDA---------------VNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~~~~~~~---------------v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  209 (353)
                      .|+.|++||+.+++.+..+..+...               +.++.| +++.+++++.+|.|++||+++++     ....+
T Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~~~  243 (425)
T 1r5m_A          169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-----PTGKL  243 (425)
T ss_dssp             TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-----CSEEE
T ss_pred             cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-----eeeee
Confidence            9999999999999999888877766               889999 66799999999999999999886     66677


Q ss_pred             eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~  287 (353)
                      ..|...+ .+++|+|++++|++++.|+.|++||++.+    .....+..|...+.++.++  + ++++++.|+.|++||+
T Consensus       244 ~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          244 IGHHGPI-SVLEFNDTNKLLLSASDDGTLRIWHGGNG----NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             CCCSSCE-EEEEEETTTTEEEEEETTSCEEEECSSSB----SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred             ccCCCce-EEEEECCCCCEEEEEcCCCEEEEEECCCC----ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence            7777765 99999999999999999999999999987    4455556778888888875  5 9999999999999999


Q ss_pred             CCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          288 EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       288 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      .+++   .+..+..|...|.+++|+|+    +++|++++.||.|++|++.+++
T Consensus       318 ~~~~---~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          318 KQNT---LLALSIVDGVPIFAGRISQD----GQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTTE---EEEEEECTTCCEEEEEECTT----SSEEEEEETTSCEEEEECHHHH
T ss_pred             CCCc---EeEecccCCccEEEEEEcCC----CCEEEEEECCCeEEEEECCCCc
Confidence            9877   56667789999999999999    9999999999999999998766

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-40  Score=272.85  Aligned_cols=277  Identities=16%  Similarity=0.262  Sum_probs=231.6

Q ss_pred             eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCcee---eEEec--cCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591           10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRM---FTKFG--HGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~---~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      ....+|.++|++++|+  +++|++++ ||.|++||+.+++.   +..+.  .|...|.+++|+  +++|++++.||.|++
T Consensus        45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            3445799999999996  88999998 99999999987653   33333  788999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||++++....                              ...+..|...|.+++|++  +++++++.||.|++||++++
T Consensus       124 ~d~~~~~~~~------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~  173 (337)
T 1gxr_A          124 WDLAAPTPRI------------------------------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ  173 (337)
T ss_dssp             EECCCC--EE------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             EECCCCCcce------------------------------eeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence            9998765211                              112236888999999998  78999999999999999999


Q ss_pred             eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      +.+..+..|...+.+++|++  ..+++++.||.|++||+++++     ....+. +... +.+++|+|+++++++++.++
T Consensus       174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~~-~~~~-v~~~~~s~~~~~l~~~~~~~  246 (337)
T 1gxr_A          174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQHD-FTSQ-IFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEEE-CSSC-EEEEEECTTSSEEEEEETTS
T ss_pred             ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-----eEeeec-CCCc-eEEEEECCCCCEEEEEcCCC
Confidence            99999999999999999943  389999999999999999886     344433 3344 49999999999999999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .|++||++...     ......|...+.++.++  +++|++++.||.|++||+.+++..   . ...|...|.+++|+|+
T Consensus       247 ~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---~-~~~~~~~v~~~~~s~~  317 (337)
T 1gxr_A          247 NVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---F-QSKESSSVLSCDISVD  317 (337)
T ss_dssp             CEEEEETTSSC-----EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---E-EEECSSCEEEEEECTT
T ss_pred             cEEEEECCCCC-----eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE---E-EecCCCcEEEEEECCC
Confidence            99999998873     23456677888888775  889999999999999999987743   2 2457889999999999


Q ss_pred             CCCCCeEEEEccCCCeEEEEEcC
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                          +++|++++.||.|++|++.
T Consensus       318 ----~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          318 ----DKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ----SCEEEEEETTSCEEEEEEE
T ss_pred             ----CCEEEEecCCCeEEEEEEe
Confidence                9999999999999999973

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-40  Score=279.57  Aligned_cols=281  Identities=19%  Similarity=0.294  Sum_probs=224.1

Q ss_pred             ceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec--cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           18 SVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG--HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        18 ~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      .++.|+|+ +++||+|. |++|+|||..+++....+.  .|...|++++|+  +++|++|+.||.|++||+++++     
T Consensus       107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----  180 (420)
T 4gga_A          107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----  180 (420)
T ss_dssp             TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----
T ss_pred             cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----
Confidence            35678997 67777765 8999999999999887664  677889999998  8899999999999999998875     


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCC-ceeeeeccccCcce
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD-LKCLESIKAHDDAV  171 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v  171 (353)
                      .+                           ..+.+|...+.++.+++..+++|+.|+.+++||... ...+..+.+|...+
T Consensus       181 ~~---------------------------~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~  233 (420)
T 4gga_A          181 RL---------------------------RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV  233 (420)
T ss_dssp             EE---------------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             EE---------------------------EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccce
Confidence            22                           223379999999999999999999999999999876 44567788999999


Q ss_pred             EEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEe--ecCCCcEEEeecccc
Q 018591          172 NGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYG--GGSDGFVMGWEGNVE  246 (353)
Q Consensus       172 ~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~  246 (353)
                      ..+.+.  +..+++++.|+.+++||...++.. .........|...+ .+++|+|++. .+++  |+.|+.|++||+.++
T Consensus       234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~-~~~~~~~~~~~~~V-~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAV-KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESSCCSSC-SCCSEEECCCSSCE-EEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeeeecCCCCeeeeeeccccceEEeecccccc-ceeeeeecccCCce-eeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            999993  349999999999999999877521 12334555666655 9999999765 4443  568999999999988


Q ss_pred             ccceeeeeeccccceeEEEEEE--cCcEEEEec--CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591          247 IVRWKLACETKAHEMAVLCVCL--VGEFLCSGS--ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL  322 (353)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l  322 (353)
                      .    ....+..+. .+.++.+  +++.+++++  .|+.|++||+.+++   ++..+.+|.+.|++++|+|+    +++|
T Consensus       312 ~----~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~---~v~~l~gH~~~V~~l~~spd----g~~l  379 (420)
T 4gga_A          312 A----CLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPD----GATV  379 (420)
T ss_dssp             E----EEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTT----SSCE
T ss_pred             c----cceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCC----CCEE
Confidence            3    333333333 3444444  567666543  79999999999887   67788999999999999999    9999


Q ss_pred             EEccCCCeEEEEEcCCCCCcccc
Q 018591          323 YSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       323 ~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      +||+.||+|++||+.+..+....
T Consensus       380 ~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          380 ASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             EEEETTTEEEEECCSCSSCC---
T ss_pred             EEEecCCeEEEEECCCCCccchh
Confidence            99999999999999876555443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-41  Score=287.02  Aligned_cols=301  Identities=16%  Similarity=0.214  Sum_probs=227.8

Q ss_pred             CCCceeeee-eCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC---ce---eeEEeccCceeeEEEEEe--CCEEEE
Q 018591            4 KSHRSLAVL-SGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD---LR---MFTKFGHGDGSVKAVVTV--GNKVFT   71 (353)
Q Consensus         4 ~~~~~~~~l-~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~---~~---~~~~~~~~~~~v~~~~~~--~~~l~s   71 (353)
                      ++++++..+ .+|.++|++++|+   +++|++|+.||+|++||+.+   +.   ....+ .|...|.+++|+  +++|++
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            467888899 8999999999995   57999999999999999876   33   23333 488999999998  789999


Q ss_pred             ecCCCcEEEEEcc---cCccceeEEeeccccccceeeeecccceeEeecccceeeeee--cCCceEEEEEe--C--CeEE
Q 018591           72 AHQDSRIRVWKVS---RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE--HADSISCLTVY--N--GLIY  142 (353)
Q Consensus        72 ~~~dg~i~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~--~~l~  142 (353)
                      ++.||.|++||++   .+..     .......  .+               ....+..  +...+.++.+.  +  .+++
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~-----~~~~~~~--~i---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  186 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESE-----VKFLNCE--CI---------------RKINLKNFGKNEYAVRMRAFVNEEKSLLV  186 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTE-----EEEEEEE--EE---------------EEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred             EeCCCEEEEEEeccccCCce-----eeccccc--ee---------------EEEEccCcccccCceEEEEEEcCCCCEEE
Confidence            9999999999996   3321     1110000  00               0000011  66778888854  4  7999


Q ss_pred             EecCCCcEEEEEcCCceeeeeccc--cCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCcee
Q 018591          143 SGSWDKTLKVWRVADLKCLESIKA--HDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSL  217 (353)
Q Consensus       143 ~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v  217 (353)
                      +|+.||.|++||+++++++..+..  |...|++++|++  ..+++++.||.|++||+++++     +...+. .|.. .|
T Consensus       187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~-~v  260 (437)
T 3gre_A          187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-----LIRSWSFGDHA-PI  260 (437)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-----EEEEEBCTTCE-EE
T ss_pred             EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-----EEEEEecCCCC-ce
Confidence            999999999999999999999987  889999999943  389999999999999999876     555554 4444 45


Q ss_pred             eEEEEcC----CCCeEEeecCCCcEEEeeccccccceeeee--------------------eccc--cceeEEEEEEc-C
Q 018591          218 NSVVVSD----DGKWVYGGGSDGFVMGWEGNVEIVRWKLAC--------------------ETKA--HEMAVLCVCLV-G  270 (353)
Q Consensus       218 ~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~--~~~~v~~~~~~-~  270 (353)
                      .+++++|    ++.+|++++.||.|++||++++.....+..                    .+.+  |...+.+++++ +
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~  340 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSND  340 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETT
T ss_pred             EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCc
Confidence            9996654    678999999999999999987743222211                    0111  55567666665 6


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEEecc----------------------------------ccCCCcCeEEEEeecCCC
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCRVGA----------------------------------ITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------------------------------~~~h~~~v~~~~~~~~~~  316 (353)
                      ++|++|+.||.|++||+.+++....+..                                  ...|...|++++|+++.+
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            7999999999999999998774433321                                  123899999999998732


Q ss_pred             CCCeEEEEccCCCeEEEEE
Q 018591          317 GGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       317 ~~~~~l~s~~~dg~i~iw~  335 (353)
                        +.+|++|+.||.|+||+
T Consensus       421 --~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 --TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             --SEEEEEEETTSCEEEEC
T ss_pred             --ceEEEEEcCCceEEEeC
Confidence              67999999999999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-41  Score=283.08  Aligned_cols=290  Identities=12%  Similarity=0.148  Sum_probs=236.2

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccce
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENV   90 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~   90 (353)
                      |.+.|++++|+  +++|++|+.||.|++|| .+++.+..+..|...|.+++|+  +++|++++.||.|++||+.++.   
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---  182 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT---  182 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---
Confidence            78899999996  88999999999999999 7888899999999999999998  7899999999999999998765   


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDD  169 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  169 (353)
                        .+..+.........            ............+.++.|++ +.+++++.||.|++||+++++.+..+..|..
T Consensus       183 --~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          183 --VMQHFELKETGGSS------------INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             --EEEEECCC---------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred             --EEEEeeccccCccc------------eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence              22222111000000            00000112233388899988 8999999999999999999999999999999


Q ss_pred             ceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591          170 AVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       170 ~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  247 (353)
                      .|.+++|++  ..+++++.|+.|++||+++++     ....+..|...+ .+++|+|++ ++++++.|+.|++||++++ 
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~i-~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-  320 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-----SQNCFYGHSQSI-VSASWVGDD-KVISCSMDGSVRLWSLKQN-  320 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBS-----CSEEECCCSSCE-EEEEEETTT-EEEEEETTSEEEEEETTTT-
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-----cceEecCCCccE-EEEEECCCC-EEEEEeCCCcEEEEECCCC-
Confidence            999999943  389999999999999999876     666777777765 999999999 9999999999999999887 


Q ss_pred             cceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcc-----------------eEEeccccCCCc--Ce
Q 018591          248 VRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGK-----------------LCRVGAITGHEG--PV  306 (353)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~h~~--~v  306 (353)
                         .....+..|...+.++.++  +++|++++.||.|++||+.+++.                 ...+..+.+|..  .|
T Consensus       321 ---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  397 (425)
T 1r5m_A          321 ---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI  397 (425)
T ss_dssp             ---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred             ---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence               4555666777788777765  88999999999999999987651                 114566788876  99


Q ss_pred             EEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          307 KCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      ++++|+|+    +++|++++.||.|++|+++
T Consensus       398 ~~~~~s~~----~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          398 FDLSWNCA----GNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEECTT----SSEEEEEESSSCCEEEECC
T ss_pred             EEEEccCC----CceEEEEecCceEEEEeec
Confidence            99999999    9999999999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=272.43  Aligned_cols=236  Identities=16%  Similarity=0.170  Sum_probs=197.2

Q ss_pred             eCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEE----eccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591           13 SGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTK----FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        13 ~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~----~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~   85 (353)
                      ..|..+|++++|+ .+.|++|+.||+|+|||+.+++.+..    ..+|...|.+++|+  +++|++|+.||+|++||+++
T Consensus        79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            3467789999997 67899999999999999998876544    35799999999998  88999999999999999988


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeee
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      ++     .+                           ..+.+|...|.+++|++   .++++++.|+.|++||++++++..
T Consensus       159 ~~-----~~---------------------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~  206 (344)
T 4gqb_B          159 QV-----VL---------------------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS  206 (344)
T ss_dssp             TE-----EE---------------------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred             Cc-----EE---------------------------EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence            75     22                           23348999999999998   478999999999999999998887


Q ss_pred             ecc--ccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC-CeEEeecCCC
Q 018591          163 SIK--AHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG-KWVYGGGSDG  236 (353)
Q Consensus       163 ~~~--~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg  236 (353)
                      .+.  .+...+.+++|.+   .++++|+.||.|++||+++++     +...+.+|...+ .+++|+|++ ++|++|+.|+
T Consensus       207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-----~~~~~~~h~~~v-~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-----CVLSSAVHSQCV-TGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------CCEEEECCSSCE-EEEEECSSSSCCEEEEETTS
T ss_pred             eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-----EEEEEcCCCCCE-EEEEEccCCCeEEEEEeCCC
Confidence            774  4556789999943   278899999999999999887     778888998876 999999997 5799999999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCc
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      .|++||+++++    + ..+.+|...|.+++|+  + .+|++++.|++|++|++.+..
T Consensus       281 ~i~vwd~~~~~----~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          281 SLAVLDSSLSE----L-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEECTTCCE----E-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEECCCCc----E-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            99999998872    2 3467899999999885  4 467899999999999998743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.6e-40  Score=271.78  Aligned_cols=288  Identities=11%  Similarity=0.085  Sum_probs=216.4

Q ss_pred             CceEEEEEC--CcEEEEEeCCC-------cEEEEeCCCcee----------eEEeccCceeeEEEEEeCCEEEEec----
Q 018591           17 GSVSSLALC--GEFILSASQGK-------DIIVWQQPDLRM----------FTKFGHGDGSVKAVVTVGNKVFTAH----   73 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg-------~v~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~l~s~~----   73 (353)
                      -||++++|+  +++|++|+.|.       .|++|++.....          ...+..|...+.+++++++.++++.    
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~   94 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS   94 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence            589999995  88999987643       599999865431          1345678889999999988887764    


Q ss_pred             -------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE--
Q 018591           74 -------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY--  142 (353)
Q Consensus        74 -------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~--  142 (353)
                             .|+.+++|+++....... .......                      .....+...+.+++|+|  ++++  
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~-~~~~~~~----------------------~~~~~~~~~~~~v~fSpDg~~la~a  151 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLE-FLTSVDF----------------------DASTNADDYTKLVYISREGTVAAIA  151 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEE-EEEEECS----------------------SCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred             cEEEEecCCCcEEEEEecCCCceEE-Eeeeece----------------------eecCCcccCEEEEEEcCCCCEEEEE
Confidence                   567899999876543211 1111000                      00114556788999999  5554  


Q ss_pred             EecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591          143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       143 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      +++.|+.|++||+++++++..+. |...|.+++|++ + ++++++ ++.+++|+..+++.   ........|... +.++
T Consensus       152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~---~~~~~~~~~~~~-v~~v  225 (365)
T 4h5i_A          152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC---IARKTDFDKNWS-LSKI  225 (365)
T ss_dssp             ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE---EEEECCCCTTEE-EEEE
T ss_pred             ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc---eeeeecCCCCCC-EEEE
Confidence            45579999999999999998885 778899999944 3 666666 55677777766651   111233345444 5999


Q ss_pred             EEcCCCCeEEeecCCC----cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceE
Q 018591          221 VVSDDGKWVYGGGSDG----FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       221 ~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                      +|+|+++++++++.|+    .+++|++............+.+|...|.++++  +|++||+|+.|++|+|||+++++   
T Consensus       226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~---  302 (365)
T 4h5i_A          226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS---  302 (365)
T ss_dssp             EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE---
T ss_pred             EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc---
Confidence            9999999999998887    68888887765444445567778888887766  58999999999999999999887   


Q ss_pred             Eecc-ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          295 RVGA-ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       295 ~~~~-~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      .+.. +.+|..+|++++|+||    +++|+|||.|++|+||++++..
T Consensus       303 ~~~~~~~gH~~~V~~v~fSpd----g~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          303 MSKIFKQAHSFAITEVTISPD----STYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EEEEETTSSSSCEEEEEECTT----SCEEEEEETTSEEEEEECCTTT
T ss_pred             EEEEecCcccCCEEEEEECCC----CCEEEEEeCCCeEEEEEcCCCC
Confidence            5554 5789999999999999    9999999999999999997553

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9e-40  Score=265.98  Aligned_cols=277  Identities=18%  Similarity=0.285  Sum_probs=218.7

Q ss_pred             eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec--cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG--HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .++|+|+ +++||+| .|++|+|||+.+++++..+.  +|...|.+++|+  +++|++|+.||+|++|++++++     .
T Consensus        28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----~  101 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----R  101 (318)
T ss_dssp             CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----E
T ss_pred             ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----e
Confidence            5789998 6677665 58999999999999888764  678889999998  8899999999999999998876     2


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc-eeeeeccccCcceE
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL-KCLESIKAHDDAVN  172 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~  172 (353)
                      +                           ..+.+|...+.++.+.+..+++++.++.+++|+.... ..+..+.+|...+.
T Consensus       102 ~---------------------------~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (318)
T 4ggc_A          102 L---------------------------RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC  154 (318)
T ss_dssp             E---------------------------EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             E---------------------------EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceE
Confidence            2                           2233799999999999999999999999999998765 45677788999999


Q ss_pred             EEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE---EeecCCCcEEEeeccccc
Q 018591          173 GLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV---YGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       173 ~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~  247 (353)
                      .+.+  .+..+++++.|+.|++||+++++.. .........+...+ ..++++|++..+   ++++.++.|++||.....
T Consensus       155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~  232 (318)
T 4ggc_A          155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-WVPLQTFTQHQGAV-KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA  232 (318)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCBTTB-SCCSEEECCCCSCE-EEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred             EEEEcCCCCEEEEEecCcceeEEECCCCccc-ccceeeecccCCce-EEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence            9999  4448999999999999999877522 12233344444544 899999976543   467889999999998863


Q ss_pred             cceeeeeeccccceeEEEEEEcCcEEEE--ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          248 VRWKLACETKAHEMAVLCVCLVGEFLCS--GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      ...   ...........++.++++.+++  |+.|+.|++||+++++   .+..+.+|.+.|++++|+|+    +++|+||
T Consensus       233 ~~~---~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~~spd----g~~l~S~  302 (318)
T 4ggc_A          233 CLS---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLTMSPD----GATVASA  302 (318)
T ss_dssp             EEE---EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEEECTT----SSCEEEE
T ss_pred             ccc---cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEcCC----CCEEEEE
Confidence            221   1112222333444455666654  4479999999999887   67788999999999999999    9999999


Q ss_pred             cCCCeEEEEEcCCCC
Q 018591          326 SLDKSLRVWWVSKQS  340 (353)
Q Consensus       326 ~~dg~i~iw~~~~~~  340 (353)
                      +.||+|+|||+.+..
T Consensus       303 s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          303 AADETLRLWRCFELD  317 (318)
T ss_dssp             ETTTEEEEECCSCCC
T ss_pred             ecCCeEEEEECCCCC
Confidence            999999999997654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-41  Score=289.55  Aligned_cols=301  Identities=12%  Similarity=0.068  Sum_probs=221.8

Q ss_pred             ceeeeeeCccCceEEEEEC--C---------cEEEE-------------------EeCCCcEEEEeCCCceee----EEe
Q 018591            7 RSLAVLSGHVGSVSSLALC--G---------EFILS-------------------ASQGKDIIVWQQPDLRMF----TKF   52 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~---------~~l~s-------------------~~~dg~v~vwd~~~~~~~----~~~   52 (353)
                      +...++. +.+.|++|+|+  +         ++||+                   ++.|++|+|||+.+++..    ..+
T Consensus       125 r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l  203 (524)
T 2j04_B          125 RRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI  203 (524)
T ss_dssp             SCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE
T ss_pred             cceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE
Confidence            3344444 57788888885  3         56666                   557889999999877642    446


Q ss_pred             ccCceeeEEEEEeC--------CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           53 GHGDGSVKAVVTVG--------NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        53 ~~~~~~v~~~~~~~--------~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      .+|.+.|.+++|+.        .+|++++.||+|++||+..+........                     ....+...+
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~---------------------~~~~p~~~l  262 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK---------------------MCEKPSLTL  262 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE---------------------CCCSCSEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce---------------------eecCceEEE
Confidence            77888999999983        5899999999999999976542100000                     001122344


Q ss_pred             eecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCce-eeeeccccCcceEEE--EEeC---CeEEEEcCCCcEEEEeCCC
Q 018591          125 IEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLK-CLESIKAHDDAVNGL--VASK---GIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       125 ~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~---~~l~~~~~dg~i~iwd~~~  197 (353)
                      .+|...|++++|++ +.|++|+.||+|++||++++. +...+.+|...|.++  .+++   .+|++++.|++|++||+++
T Consensus       263 ~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          263 SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            58999999999988 899999999999999998764 455678999999999  4543   4789999999999999988


Q ss_pred             CCcccccceeeeeccCC-ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEE
Q 018591          198 GKSHCHSLKGILEGHKD-VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLC  274 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  274 (353)
                      ++     ....+.+|.. ..+.+++|+|+++.+++++.|+.|++||++..    .....+.+|...|.+++++  +++|+
T Consensus       343 ~~-----~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          343 IA-----TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             HH-----HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred             CC-----cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEeCCCCCeEE
Confidence            76     4445555543 22488999999999999999999999999887    3444566788899888875  88999


Q ss_pred             EecCCCeEEEEecCCC-----c---------c---------------------------eEEeccccCCCcCeEEEEeec
Q 018591          275 SGSADKSIGIWKREAF-----G---------K---------------------------LCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~-----~---------~---------------------------~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      +|+.||+|++||+...     +         .                           ...+..+.+|..+|.+++|+|
T Consensus       414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp  493 (524)
T 2j04_B          414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE  493 (524)
T ss_dssp             EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred             EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence            9999999999985321     0         0                           012334567889999999999


Q ss_pred             CCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +.+. +..+++|+.||.|+||++.-.
T Consensus       494 ~~~~-~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          494 TSAG-GKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             STTT-TTEEEEECTTSEEEEEECSCC
T ss_pred             CCCc-cHHHHhhccCceEEEEEcccc
Confidence            8211 349999999999999998754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-41  Score=286.71  Aligned_cols=290  Identities=14%  Similarity=0.150  Sum_probs=236.7

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC----ceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcc
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPD----LRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~   84 (353)
                      .|...|++++|+  +++|++|+.||.|++||+.+    .+.+..+..|...|.+++|+   +++|++++.||.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            588999999996  88999999999999999987    45888899999999999997   6789999999999999998


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCL  161 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~  161 (353)
                      +......... .                      .....+..|...|.+++|++   .++++++.||.|++||+++++.+
T Consensus       145 ~~~~~~~~~~-~----------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          145 KCTESPSNYT-P----------------------LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV  201 (416)
T ss_dssp             TTSSCTTTCC-C----------------------BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred             CCcccccccc-c----------------------cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence            7651000000 0                      00011126889999999998   58999999999999999999998


Q ss_pred             eecccc------CcceEEEEEeC---CeEEEEcCCC---cEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcC-CCC
Q 018591          162 ESIKAH------DDAVNGLVASK---GIVYSASADG---KIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSD-DGK  227 (353)
Q Consensus       162 ~~~~~~------~~~v~~i~~~~---~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~  227 (353)
                      ..+..+      ...|.+++|++   ..+++++.|+   .|++||+++..    .+...+. +|...+ .+++|+| +++
T Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~----~~~~~~~~~~~~~v-~~~~~s~~~~~  276 (416)
T 2pm9_A          202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN----TPLQTLNQGHQKGI-LSLDWCHQDEH  276 (416)
T ss_dssp             EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----SCSBCCCSCCSSCE-EEEEECSSCSS
T ss_pred             eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----CCcEEeecCccCce-eEEEeCCCCCC
Confidence            888776      78999999943   3799999998   99999999863    1455666 677665 9999999 899


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C-cEEEEecCCCeEEEEecCCCcceEEe--------
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G-EFLCSGSADKSIGIWKREAFGKLCRV--------  296 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iw~~~~~~~~~~~--------  296 (353)
                      +|++++.||.|++||++++    +....+..|...+.++.++  + .+|++++.||.|++||+.+.+.....        
T Consensus       277 ~l~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  352 (416)
T 2pm9_A          277 LLLSSGRDNTVLLWNPESA----EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ  352 (416)
T ss_dssp             CEEEEESSSEEEEECSSSC----CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--------
T ss_pred             eEEEEeCCCCEEEeeCCCC----ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc
Confidence            9999999999999999987    5566667788888777775  5 79999999999999999876532111        


Q ss_pred             ------------------------ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          297 ------------------------GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       297 ------------------------~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                                              .....|..++.+++|+|+    |++|++++.||.|+||++.+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          353 ESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG----GKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             --------------CCSCCCSSCCCCCSTTCCCSCCCEEETT----TEEECBCTTSSCBCCBCCCCC
T ss_pred             CCcccccccccccccccccccccccCCccccCCccceEEeeC----CeEEEEeCCCCeEEEEEeccC
Confidence                                    011126778889999999    999999999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.7e-40  Score=276.06  Aligned_cols=288  Identities=14%  Similarity=0.154  Sum_probs=227.0

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      +++....+.+| ..+....|+  +++|++|+.||.|++||+.+++....+..|...|.+++|+  +++|++++.||.|++
T Consensus        87 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A           87 IRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             SEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            34444555555 333333554  8899999999999999999999999889999999999998  779999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ||+++++.                                ...+.+|...|.+++|+|  .+|++++.||.|++||++++
T Consensus       166 wd~~~~~~--------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          166 WSVKDGSN--------------------------------PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             EETTTCCC--------------------------------CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT
T ss_pred             EeCCCCcC--------------------------------ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC
Confidence            99987651                                222347999999999998  78999999999999999999


Q ss_pred             eeeeeccc---cCcceEEEEE---------------------eC--CeEEEEcCCCcEEEEeCCCCCcccccceeeee-c
Q 018591          159 KCLESIKA---HDDAVNGLVA---------------------SK--GIVYSASADGKIKAWGKELGKSHCHSLKGILE-G  211 (353)
Q Consensus       159 ~~~~~~~~---~~~~v~~i~~---------------------~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~  211 (353)
                      +.+..+..   +...+.++++                     ++  ..+++++.||.|++||+++++     ....+. .
T Consensus       214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~  288 (420)
T 3vl1_A          214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-----QTIQLPSK  288 (420)
T ss_dssp             EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC-----EEEEECCT
T ss_pred             ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc-----eeEEcccc
Confidence            99888864   4556666655                     12  289999999999999999887     344443 4


Q ss_pred             cCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE-cCcEEEEecCCCeEEEEecC
Q 018591          212 HKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL-VGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       212 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~  288 (353)
                      |... +.+++|+|++. +|++++.||.|++||++++..   ....+.. |...+.++.+ ++++|++++.||.|++|++.
T Consensus       289 ~~~~-v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          289 FTCS-CNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             TSSC-EEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred             cCCC-ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence            5544 59999999998 999999999999999988632   2233333 5556666655 58899999999999999998


Q ss_pred             CCcceEE------eccccCCCcCeEEEEeecCCCCCCe---EEEEccCCCeEEEEEcCC
Q 018591          289 AFGKLCR------VGAITGHEGPVKCLQASPNAVGGGF---LLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       289 ~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~~---~l~s~~~dg~i~iw~~~~  338 (353)
                      ..+.+..      ...+.+|.+.|.+++|+|+    +.   .|++++.+|.+.+|++++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSD----DESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CTTCCSCEECTTSCEEECCSSCCCCEEEEECC----SSSSCEEEEEETTTEEEEEESCC
T ss_pred             CCCCCccceeccCccEEccCCcceEEEEEccC----CCCcceEEEEcCCceEEEEeccC
Confidence            7533211      1234578889999999999    66   666667789999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-39  Score=267.46  Aligned_cols=254  Identities=16%  Similarity=0.216  Sum_probs=215.7

Q ss_pred             ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      .+....+.+|.+.|.+++|+  +++|++++.||+|++||+.++.     .+.                           .
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----~~~---------------------------~   92 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVH---------------------------A   92 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----EEE---------------------------E
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----cce---------------------------E
Confidence            45677889999999999998  7899999999999999998765     222                           2


Q ss_pred             eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc----eeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCC
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL----KCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~  196 (353)
                      +..|...|.+++|+|  +++++|+.|+.|++||+.+.    .....+.+|...|.++.| +++.+++++.|++|++||++
T Consensus        93 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~  172 (340)
T 1got_B           93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE  172 (340)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC
Confidence            236888999999999  89999999999999999765    356677899999999999 66799999999999999999


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLC  274 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  274 (353)
                      +++     ....+.+|...+ .+++|+|+++++++|+.|+.|++||++++    .....+.+|...+.++.++  +++|+
T Consensus       173 ~~~-----~~~~~~~h~~~v-~~~~~~~~~~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~  242 (340)
T 1got_B          173 TGQ-----QTTTFTGHTGDV-MSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFA  242 (340)
T ss_dssp             TTE-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCc-----EEEEEcCCCCce-EEEEECCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEE
Confidence            887     677788888776 99999999999999999999999999987    4556677888888887774  88999


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +|+.||.|++||+++++..... ....+...|++++|+|+    +++|++|+.||.|++||+.+++.+....
T Consensus       243 s~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~~~~~~~~  309 (340)
T 1got_B          243 TGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTT----SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEE-ccCCcccceEEEEECCC----CCEEEEECCCCeEEEEEcccCcEeeEee
Confidence            9999999999999987633221 12334457999999999    9999999999999999998887665443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-39  Score=288.58  Aligned_cols=318  Identities=17%  Similarity=0.204  Sum_probs=237.0

Q ss_pred             CCCCceeeeeeCccC---ceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEe-c---cCceeeEEEEEe-CCEEEE
Q 018591            3 CKSHRSLAVLSGHVG---SVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKF-G---HGDGSVKAVVTV-GNKVFT   71 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~---~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~-~---~~~~~v~~~~~~-~~~l~s   71 (353)
                      .++++++..+.+|..   .|++++|+   +++|++++.||.|++||+.+++.+..+ .   .|...|.++.|+ +.+|++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~  269 (615)
T 1pgu_A          190 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT  269 (615)
T ss_dssp             TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             CCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEE
Confidence            356788899999999   99999995   679999999999999999999999999 6   899999999995 889999


Q ss_pred             ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee-------------cccceeee--------------
Q 018591           72 AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT-------------RRHHKRLW--------------  124 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~--------------  124 (353)
                      ++.||.|++||+++++..........+...............+..             .......+              
T Consensus       270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  349 (615)
T 1pgu_A          270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP  349 (615)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence            999999999999876521111100000000000000001100000             01111222              


Q ss_pred             -------------------eecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC---------------------------
Q 018591          125 -------------------IEHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD---------------------------  157 (353)
Q Consensus       125 -------------------~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~---------------------------  157 (353)
                                         .+|...|.+++|.+ +.+++++.|+.|++||+.+                           
T Consensus       350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  429 (615)
T 1pgu_A          350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL  429 (615)
T ss_dssp             TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred             cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCce
Confidence                               24556666666654 6777777777777777653                           


Q ss_pred             -------ceeeeeccccCcceEEEEEeCCeEEEEcC-CCcEEEEeCCCCCcccccce-eeeeccCCceeeEEEEcCCCCe
Q 018591          158 -------LKCLESIKAHDDAVNGLVASKGIVYSASA-DGKIKAWGKELGKSHCHSLK-GILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       158 -------~~~~~~~~~~~~~v~~i~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                             ++.+..+ .+...+.++++++..+++++. |+.|++||+.+++     .. ..+..|...+ .+++|+|++++
T Consensus       430 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~v-~~~~~s~~g~~  502 (615)
T 1pgu_A          430 LILQSFTGDIIKSV-RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE-----VSFDLKTPLRAKP-SYISISPSETY  502 (615)
T ss_dssp             EEEETTTCCEEEEE-ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE-----EEEECSSCCSSCE-EEEEECTTSSE
T ss_pred             EEEeccCCceeeec-ccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcc-----ccccccCCccCce-EEEEECCCCCE
Confidence                   2223333 256778888888778888888 9999999998765     22 5556676665 99999999999


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE------------cCcEEEEecCCCeEEEEecCCCcceEE
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL------------VGEFLCSGSADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~------------~~~~l~~~~~dg~i~iw~~~~~~~~~~  295 (353)
                      |++++.||.|++||+.++    +....+.+ |...+.++.+            ++++|++++.||.|++||+.++..  .
T Consensus       503 l~~~~~dg~i~iw~~~~~----~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~  576 (615)
T 1pgu_A          503 IAAGDVMGKILLYDLQSR----EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--I  576 (615)
T ss_dssp             EEEEETTSCEEEEETTTT----EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--C
T ss_pred             EEEcCCCCeEEEeeCCCC----cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce--e
Confidence            999999999999999987    45555666 8888887776            678999999999999999998732  5


Q ss_pred             eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      +..+.+|...|++++|+|+    ++ |++++.||.|++|+++.
T Consensus       577 ~~~~~~h~~~v~~l~~s~~----~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          577 IKALNAHKDGVNNLLWETP----ST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEETTSSTTCEEEEEEEET----TE-EEEEETTSCEEEEEEC-
T ss_pred             chhhhcCccceEEEEEcCC----CC-eEEecCCceEEEEeeec
Confidence            6668899999999999999    99 99999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-41  Score=283.01  Aligned_cols=295  Identities=13%  Similarity=0.089  Sum_probs=220.3

Q ss_pred             eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc--eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591           10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~   83 (353)
                      ..++.|.++|++++|+  +++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+  +++|++++.||.|++||+
T Consensus         5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            3455678899999996  889999999999999999988  7888899999999999998  789999999999999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce--
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK--  159 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~--  159 (353)
                      +++...                             .....+.+|...|.+++|+|  ++|++++.|+.|++||+++++  
T Consensus        85 ~~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           85 RPDGTW-----------------------------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             ----CC-----------------------------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             CCCCce-----------------------------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            876400                             01122237999999999998  799999999999999998877  


Q ss_pred             -eeeeccc-cCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcc-------------cccceeeeeccCCceeeEEEE
Q 018591          160 -CLESIKA-HDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSH-------------CHSLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       160 -~~~~~~~-~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~  222 (353)
                       ....+.. |...|.+++|+++  ++++++.|+.|++||++.....             ...+...+ .|...+ .+++|
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~  213 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV-HAVGF  213 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE-EEEEE
T ss_pred             eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE-EEEEE
Confidence             3667777 9999999999443  8999999999999998643210             11233444 666655 99999


Q ss_pred             cCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc-c-------
Q 018591          223 SDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG-K-------  292 (353)
Q Consensus       223 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~-~-------  292 (353)
                      +|++++|++++.||.|++||+.++.........+..|...+.++.+  ++++|++|+.++.+ +|+..... .       
T Consensus       214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~  292 (377)
T 3dwl_C          214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDA  292 (377)
T ss_dssp             CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCS
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecc
Confidence            9999999999999999999999885443446677788887877766  58899999877766 66554211 0       


Q ss_pred             -------------------e---------EEe-------------ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          293 -------------------L---------CRV-------------GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       293 -------------------~---------~~~-------------~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                                         .         ...             .....|...|+++.+.+....+...|+|++.||.|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i  372 (377)
T 3dwl_C          293 GTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRV  372 (377)
T ss_dssp             CCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcE
Confidence                               0         000             01123999999999877521111279999999999


Q ss_pred             EEEEc
Q 018591          332 RVWWV  336 (353)
Q Consensus       332 ~iw~~  336 (353)
                      ++||+
T Consensus       373 ~iWdl  377 (377)
T 3dwl_C          373 VLWTL  377 (377)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6e-39  Score=274.63  Aligned_cols=304  Identities=24%  Similarity=0.335  Sum_probs=244.0

Q ss_pred             CCCCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCCc
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSR   77 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~   77 (353)
                      ..+++++..+.+|.++|++++|+ +.+|++|+.||+|++||+.+++.+..+.+|...|.++++.    +.++++++.||.
T Consensus       149 ~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          149 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             CCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            46788999999999999999997 5599999999999999999999999999999999999986    478999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCC
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~  157 (353)
                      |++||+++.........     ..........+.    ........+.+|...+.++...++++++|+.||.|++||+++
T Consensus       229 i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~  299 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGE-----EHDYPLVFHTPE----ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ  299 (464)
T ss_dssp             EEEEECCCCCCC-----------CCSSEEESCGG----GCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             EEEeeCCCCcccccccc-----cCCcceEeeccC----CCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            99999987652211100     000000000000    001123455689999999988889999999999999999999


Q ss_pred             ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591          158 LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ++++..+.+|...|.++++++  ..+++++.||.|++||+++++     ....+.+|...+ .+++++  ++++++++.|
T Consensus       300 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v-~~~~~~--~~~l~s~s~d  371 (464)
T 3v7d_B          300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-----LMYTLQGHTALV-GLLRLS--DKFLVSAAAD  371 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEEC--SSEEEEEETT
T ss_pred             CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----EEEEEeCCCCcE-EEEEEc--CCEEEEEeCC
Confidence            999999999999999999944  499999999999999999887     777888888776 999997  5799999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecc-ccCCCcCeEEEEeecC
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPN  314 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~  314 (353)
                      |.|++||+.+......   ....+...+.++.++++++++|+ ||.|++||+++++   .+.. +.+|...|.+++|++ 
T Consensus       372 g~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~---~~~~~~~~~~~~v~~v~~~~-  443 (464)
T 3v7d_B          372 GSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK---LVHANILKDADQIWSVNFKG-  443 (464)
T ss_dssp             SEEEEEETTTCCEEEE---EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC---EEESCTTTTCSEEEEEEEET-
T ss_pred             CcEEEEECCCCceeee---ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc---EEehhhccCCCcEEEEEecC-
Confidence            9999999998642222   22344566788888999999998 8999999999987   4443 567899999999984 


Q ss_pred             CCCCCeEEEEccCCCeEEEEE
Q 018591          315 AVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~  335 (353)
                          ..++++++.||.+.+|-
T Consensus       444 ----~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          444 ----KTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             ----TEEEEEEEETTEEEEEE
T ss_pred             ----CEEEEEEEeCCeEEEEE
Confidence                57777778888766554

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.6e-40  Score=269.54  Aligned_cols=281  Identities=11%  Similarity=0.078  Sum_probs=229.6

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce---eeEEeccCceeeEEEEEe--CC-EEEEecCCCcEEE
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR---MFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRV   80 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~   80 (353)
                      +....+|.+.|++++|+  +++|++++.||.|++||+.+++   ....+..|...|.+++|+  ++ +|++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            44556899999999996  8899999999999999998776   344556889999999998  78 8999999999999


Q ss_pred             EEc-ccCccceeEEeeccccccceeeeecccceeEeecccceeeeee--cCCceEEEEEeC-CeEEEecCCCcEEEEEcC
Q 018591           81 WKV-SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE--HADSISCLTVYN-GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        81 w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~  156 (353)
                      ||+ +++..                                 ..+.+  |...|.+++|++ +.+++++.|+.|++||++
T Consensus        84 wd~~~~~~~---------------------------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~  130 (342)
T 1yfq_A           84 VDLIGSPSF---------------------------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             ECSSSSSSE---------------------------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             EEeccCCce---------------------------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccc
Confidence            999 77651                                 11226  999999999997 999999999999999998


Q ss_pred             C---------ceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEcC-C
Q 018591          157 D---------LKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVSD-D  225 (353)
Q Consensus       157 ~---------~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  225 (353)
                      +         ++++..+. |...|.++++.++.+++++.|+.|++||+++ ...   ........+... +.+++|+| +
T Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~-i~~i~~~~~~  205 (342)
T 1yfq_A          131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---NGTIEESGLKYQ-IRDVALLPKE  205 (342)
T ss_dssp             HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC---CCEEEECSCSSC-EEEEEECSGG
T ss_pred             ccccccccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc---cceeeecCCCCc-eeEEEECCCC
Confidence            8         77777776 8899999999777799999999999999988 441   122233344444 59999999 9


Q ss_pred             CCeEEeecCCCcEEEeecccc--ccceeeeeeccccc---------eeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591          226 GKWVYGGGSDGFVMGWEGNVE--IVRWKLACETKAHE---------MAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       226 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~---------~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      ++++++++.||.|++|+++..  .........+..|.         ..+.++.+  ++++|++++.||.|++||+.+++ 
T Consensus       206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-  284 (342)
T 1yfq_A          206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-  284 (342)
T ss_dssp             GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-
T ss_pred             CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh-
Confidence            999999999999999999775  11112333344443         37777776  58899999999999999999877 


Q ss_pred             eEEeccccCC-CcCeEEEEeecCCCCCCeEEEEccCCCe-EEEEEc
Q 018591          293 LCRVGAITGH-EGPVKCLQASPNAVGGGFLLYSGSLDKS-LRVWWV  336 (353)
Q Consensus       293 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~s~~~dg~-i~iw~~  336 (353)
                        .+..+.+| ..+|++++  |+    +++|++++.||. .+.|..
T Consensus       285 --~~~~~~~~h~~~v~~~~--~~----~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          285 --KIKNFAKFNEDSVVKIA--CS----DNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             --EEEECCCCSSSEEEEEE--EC----SSEEEEEEECTHHHHCSSS
T ss_pred             --HhhhhhcccCCCceEec--CC----CCeEEEEecCCcccccccc
Confidence              56678888 99999999  88    999999999998 555543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.4e-39  Score=261.81  Aligned_cols=252  Identities=18%  Similarity=0.256  Sum_probs=202.4

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCC--ceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEE
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPD--LRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRV   80 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~   80 (353)
                      +..+.+|.+.|++++|+  |++||+|+.|++|++||+.+  .+.+..+.+|.+.|.+++|+    +++|++++.||+|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            45788999999999996  89999999999999999874  46788999999999999995    679999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcC
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~  156 (353)
                      ||++++....                              ...+.+|...|.+++|+|    .+|++++.|+.|++||++
T Consensus        82 Wd~~~~~~~~------------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~  131 (297)
T 2pm7_B           82 WKEENGRWSQ------------------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK  131 (297)
T ss_dssp             EEBSSSCBCC------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred             EEcCCCceEE------------------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence            9998653111                              112236899999999997    489999999999999998


Q ss_pred             Cce--eeeeccccCcceEEEEEeC---------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          157 DLK--CLESIKAHDDAVNGLVASK---------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       157 ~~~--~~~~~~~~~~~v~~i~~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                      ++.  ....+.+|...|.+++|++               ..|++++.|++|++||+++++. .......+.+|...+ .+
T Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-~~~~~~~l~~H~~~V-~~  209 (297)
T 2pm7_B          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWV-RD  209 (297)
T ss_dssp             SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCE-EE
T ss_pred             CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-eEEEEEEecCCCCce-EE
Confidence            753  2356678999999999954               3899999999999999987541 112345677888776 99


Q ss_pred             EEEcCCC---CeEEeecCCCcEEEeecccccccee-eeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591          220 VVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWK-LACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       220 ~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      ++|+|++   .+|++++.|+.|++||++....... .......|...+.++++  ++++|++++.||.|++|+......
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~  288 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCc
Confidence            9999984   8999999999999999987432111 11112456667777666  589999999999999999875443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-39  Score=295.12  Aligned_cols=287  Identities=18%  Similarity=0.251  Sum_probs=246.8

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      +..+.+.+|.+.|++++|+  +++|++|+.||.|++||+.+++.+..+..|...|.+++|+  +++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            4678899999999999997  8999999999999999999999999999999999999998  88999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc-e
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL-K  159 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~-~  159 (353)
                      +.++.     .                           ...+.+|...|.+++|+|  ..+++++.||.|++||++++ .
T Consensus        84 ~~~~~-----~---------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           84 YNTGE-----K---------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA  131 (814)
T ss_dssp             TTTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred             CCCCc-----E---------------------------EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence            98775     2                           122237999999999999  78999999999999999886 7


Q ss_pred             eeeeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeecC
Q 018591          160 CLESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGGS  234 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  234 (353)
                      ....+.+|...|.+++|++   +.+++++.||.|++||+.++.     ....+..+....+..++|+|  ++.++++++.
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            7788889999999999965   389999999999999998876     45555555544459999999  9999999999


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS  312 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~  312 (353)
                      ||.|++||+.++    .....+..|...+.++.++  ++++++++.||.|++||+.+++   .+..+..|...+.+++|+
T Consensus       207 dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~  279 (814)
T 3mkq_A          207 DLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK---VEKTLNVGLERSWCIATH  279 (814)
T ss_dssp             TSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS---EEEEECCSSSSEEEEEEC
T ss_pred             CCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEeecCCCcEEEEEEc
Confidence            999999999887    4556667788888777764  7899999999999999999877   666778889999999999


Q ss_pred             cCCCCCCe--EEEEccCCCeEEEEEcCCCCCc
Q 018591          313 PNAVGGGF--LLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       313 ~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      |+    +.  +++++ .|+.+.+|++......
T Consensus       280 ~~----~~~~~~~~~-~~~~~~~~~~~~~~~~  306 (814)
T 3mkq_A          280 PT----GRKNYIASG-FDNGFTVLSLGNDEPT  306 (814)
T ss_dssp             TT----CGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred             cC----CCceEEEEE-eCCCEEEEEcCCCCce
Confidence            99    65  45555 4667889998765543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-39  Score=308.48  Aligned_cols=294  Identities=21%  Similarity=0.308  Sum_probs=243.6

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~   83 (353)
                      ....+.+|.+.|++++|+  +++|++|+.||+|++||+.+++.+..+.+|...|.+++|+  +++|++++.||.|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            345678999999999996  8999999999999999999999999999999999999998  789999999999999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      .++.     .                           ...+.+|...|.++.|++    ..+++|+.|+.|++||+++++
T Consensus       687 ~~~~-----~---------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          687 ATGK-----L---------------------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             TTCC-----E---------------------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             CCCc-----e---------------------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence            8875     2                           222337999999999987    479999999999999999999


Q ss_pred             eeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccc----------------------------------
Q 018591          160 CLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCH----------------------------------  203 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------  203 (353)
                      ++..+.+|...|++++|++  ..+++++.||.|++||+++++....                                  
T Consensus       735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  814 (1249)
T 3sfz_A          735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII  814 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred             hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence            9999999999999999943  3899999999999999876541100                                  


Q ss_pred             ---------------cceeee-eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591          204 ---------------SLKGIL-EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC  267 (353)
Q Consensus       204 ---------------~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  267 (353)
                                     .....+ .+|... +.+++|+|+++++++++.||.|++||+.++    .....+.+|...+.++.
T Consensus       815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~  889 (1249)
T 3sfz_A          815 VAAKNKVLLFDIHTSGLLAEIHTGHHST-IQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVM  889 (1249)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECSSSSC-CCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEE
T ss_pred             EEcCCcEEEEEecCCCceeEEcCCCCCc-eEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEE
Confidence                           000111 144444 489999999999999999999999999987    45556677777777777


Q ss_pred             Ec--CcEEEEecCCCeEEEEecCC--------------------------------------------------------
Q 018591          268 LV--GEFLCSGSADKSIGIWKREA--------------------------------------------------------  289 (353)
Q Consensus       268 ~~--~~~l~~~~~dg~i~iw~~~~--------------------------------------------------------  289 (353)
                      ++  +++|++++.||.|++|++.+                                                        
T Consensus       890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  969 (1249)
T 3sfz_A          890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL  969 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence            64  67888888888888887532                                                        


Q ss_pred             -----------------------CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          290 -----------------------FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       290 -----------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                                             ++   .+..+.+|...|++++|+|+    +++|++++.||.|++|++.+++.....
T Consensus       970 sp~g~~l~~g~~~g~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~d----g~~l~s~~~dg~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A          970 SPHLEYVAFGDEDGAIKIIELPNNR---VFSSGVGHKKAVRHIQFTAD----GKTLISSSEDSVIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp             CTTSSEEEEEETTSCCEEEETTTTS---CEEECCCCSSCCCCEEECSS----SSCEEEECSSSBEEEEETTTTEEECCB
T ss_pred             cCCCCEEEEEcCCCCEEEEEcCCCc---eeeecccCCCceEEEEECCC----CCEEEEEcCCCEEEEEECCCCceEEEe
Confidence                                   11   23345679999999999999    999999999999999999988765433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-39  Score=260.85  Aligned_cols=253  Identities=17%  Similarity=0.202  Sum_probs=206.1

Q ss_pred             eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      +..+.+|...|.+++|+  +++|++|+.|++|++||++.....                              ....+.+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------------------------------~~~~l~g   51 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------------------------------LIDTLTG   51 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------------------------------CCEEECC
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------------------------------EEEEEcc
Confidence            34567899999999998  889999999999999999754211                              1223348


Q ss_pred             cCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCC
Q 018591          127 HADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKE  196 (353)
Q Consensus       127 ~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~  196 (353)
                      |..+|.+++|++    ++|++|+.|++|++||+++++  .+..+..|...|.+++|.+    .++++++.|+.|++||++
T Consensus        52 H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~  131 (297)
T 2pm7_B           52 HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK  131 (297)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred             ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence            999999999974    689999999999999998764  5566778999999999943    489999999999999998


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCC-------------CCeEEeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDD-------------GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV  263 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  263 (353)
                      .....   ....+.+|...+ .+++|+|+             +++|++|+.|+.|++||++.+.........+.+|...|
T Consensus       132 ~~~~~---~~~~~~~h~~~v-~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V  207 (297)
T 2pm7_B          132 ENGTT---SPIIIDAHAIGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (297)
T ss_dssp             SSSCB---CCEEEECCSSCE-EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             CCCce---eeeeeecccCcc-ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence            76311   134566777765 99999997             57999999999999999987654445666788899999


Q ss_pred             EEEEEcC-----cEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          264 LCVCLVG-----EFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       264 ~~~~~~~-----~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      .++++++     .+|++++.|++|++||+++....  ..+....+|...|.+++|+|+    +++|++++.||.|++|+.
T Consensus       208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEETTSCEEEEEE
T ss_pred             EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC----CCEEEEEcCCCcEEEEEE
Confidence            9998863     68999999999999999875321  122222578899999999999    999999999999999998


Q ss_pred             CCC
Q 018591          337 SKQ  339 (353)
Q Consensus       337 ~~~  339 (353)
                      ...
T Consensus       284 ~~~  286 (297)
T 2pm7_B          284 NLE  286 (297)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            743

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-40  Score=281.37  Aligned_cols=286  Identities=13%  Similarity=0.171  Sum_probs=233.9

Q ss_pred             ccCceEEEEEC--Cc-EEEEE----------eCCCcEEEEeCCCce---eeEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591           15 HVGSVSSLALC--GE-FILSA----------SQGKDIIVWQQPDLR---MFTKFGHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus        15 h~~~v~~~~~~--~~-~l~s~----------~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      +...|.+++|+  ++ +|++|          +.||.|++||+.+++   .+..+ .|...|.+++|+  +.+|++++.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            45679999996  55 99999          899999999998876   33334 478899999997  78999999999


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVW  153 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iw  153 (353)
                      .|++|++....... ..                           ...+.+|...|.+++|+|   .+|++++.||.|++|
T Consensus        90 ~v~vw~~~~~~~~~-~~---------------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           90 SLELYSTNEANNAI-NS---------------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CEEEECCSSTTSCC-CE---------------------------EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             eEEEeecccccccc-cc---------------------------hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            99999998732100 01                           222337999999999997   689999999999999


Q ss_pred             EcCCce------eee---eccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC-----Cce
Q 018591          154 RVADLK------CLE---SIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK-----DVS  216 (353)
Q Consensus       154 d~~~~~------~~~---~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~  216 (353)
                      |+++++      ...   .+..|...|.+++|++   ..+++++.||.|++||+++++     ....+..+.     ...
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~  216 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-----EVIHLSYTSPNSGIKQQ  216 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-----EEEEECCCCCSSCCCCC
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-----cceEEeccccccccCCc
Confidence            998876      332   3467899999999943   489999999999999999886     555555552     334


Q ss_pred             eeEEEEcCCC-CeEEeecCCC---cEEEeeccccccceeeeeecc-ccceeEEEEEE---cCcEEEEecCCCeEEEEecC
Q 018591          217 LNSVVVSDDG-KWVYGGGSDG---FVMGWEGNVEIVRWKLACETK-AHEMAVLCVCL---VGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       217 v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~---~~~~l~~~~~dg~i~iw~~~  288 (353)
                      +.+++|+|++ .++++++.|+   .|++||++...   .....+. +|...+.++.+   ++++|++++.||.|++||++
T Consensus       217 v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          217 LSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             EEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             eEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence            5999999997 6899999998   99999998853   2344455 78888888877   47899999999999999999


Q ss_pred             CCcceEEeccccCCCcCeEEEEeecCCCCCC-eEEEEccCCCeEEEEEcCCCCCccc
Q 018591          289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGG-FLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +++   .+..+.+|...|++++|+|+    + .+|++++.||.|++|++.+......
T Consensus       294 ~~~---~~~~~~~~~~~v~~~~~s~~----~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          294 SAE---QLSQFPARGNWCFKTKFAPE----APDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             SCC---EEEEEECSSSCCCCEEECTT----CTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             CCc---cceeecCCCCceEEEEECCC----CCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            887   67778899999999999999    7 8999999999999999998776544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-40  Score=274.70  Aligned_cols=276  Identities=16%  Similarity=0.148  Sum_probs=196.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC------CCcEEEEEcccCccceeEEeecc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ------DSRIRVWKVSRSSENVFRLVDTL   97 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~   97 (353)
                      .++++.++.+.....|+++...    ...|...|.+++|+  |++|++++.      |+.|++|+..++....     .+
T Consensus        16 ~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----~~   86 (357)
T 4g56_B           16 ENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----SL   86 (357)
T ss_dssp             ----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----GG
T ss_pred             cceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----eE
Confidence            3455666667888999976443    34689999999998  899999997      6778888876554110     00


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeee----ccccCcceE
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLES----IKAHDDAVN  172 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~  172 (353)
                                             .....+|...|.+++|+| +.+++++.||.|++||+.+++....    ..+|...|+
T Consensus        87 -----------------------~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~  143 (357)
T 4g56_B           87 -----------------------CTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK  143 (357)
T ss_dssp             -----------------------CSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEE
T ss_pred             -----------------------ecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE
Confidence                                   111227889999999999 8888999999999999988765433    347899999


Q ss_pred             EEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccc
Q 018591          173 GLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       173 ~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~  249 (353)
                      +++|++  .+|++++.|+.|++||+++++     ....+.+|...+ .+++|+|++. ++++++.||.|++||+++++..
T Consensus       144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~h~~~v-~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~  217 (357)
T 4g56_B          144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKA-----VLKSYNAHSSEV-NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA  217 (357)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEcCCCCCE-EEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence            999943  389999999999999999887     777888888876 9999999874 7899999999999999887432


Q ss_pred             eeeeeeccccceeEEEEEEc---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591          250 WKLACETKAHEMAVLCVCLV---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS  326 (353)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~  326 (353)
                      ..  .....+...+.++.++   +.+|++|+.|+.|++||+++++   .+..+.+|...|++++|+|+   ++++|++|+
T Consensus       218 ~~--~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~l~~sp~---~~~~lasgs  289 (357)
T 4g56_B          218 TR--IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---SAQTSAVHSQNITGLAYSYH---SSPFLASIS  289 (357)
T ss_dssp             CB--CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG---GCEEECCCSSCEEEEEECSS---SSCCEEEEE
T ss_pred             ee--eeeccccccccchhhhhcccceEEEeecccceeEEECCCCc---EeEEEeccceeEEEEEEcCC---CCCEEEEEe
Confidence            22  2334556667777764   5689999999999999999887   56677899999999999998   136899999


Q ss_pred             CCCeEEEEEcCCCCCcccccC
Q 018591          327 LDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       327 ~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      .||+|+|||+++++.+.....
T Consensus       290 ~D~~i~iwd~~~~~~~~~~~H  310 (357)
T 4g56_B          290 EDCTVAVLDADFSEVFRDLSH  310 (357)
T ss_dssp             TTSCEEEECTTSCEEEEECCC
T ss_pred             CCCEEEEEECCCCcEeEECCC
Confidence            999999999999887765543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=270.23  Aligned_cols=290  Identities=19%  Similarity=0.231  Sum_probs=232.6

Q ss_pred             CCCceeeeeeCccCceEEEEEC-----CcEEEEEeCCCcEEEEeCCC-ceee-EEeccCceeeEEEEEe--CCEEEEecC
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC-----GEFILSASQGKDIIVWQQPD-LRMF-TKFGHGDGSVKAVVTV--GNKVFTAHQ   74 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~-----~~~l~s~~~dg~v~vwd~~~-~~~~-~~~~~~~~~v~~~~~~--~~~l~s~~~   74 (353)
                      ...+.+..+.+|.+.|++++|+     |++|++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+  +++|++++.
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            3456788899999999999996     38999999999999999987 5554 7788999999999998  789999999


Q ss_pred             CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE--eC--CeEEEecCCCcE
Q 018591           75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV--YN--GLIYSGSWDKTL  150 (353)
Q Consensus        75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~l~~~~~dg~v  150 (353)
                      ||.|++||++++..     ..                            ..+|...|.++.|  ++  .++++++.||.|
T Consensus       107 dg~v~iwd~~~~~~-----~~----------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i  153 (368)
T 3mmy_A          107 DKTAKMWDLSSNQA-----IQ----------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL  153 (368)
T ss_dssp             TSEEEEEETTTTEE-----EE----------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             CCcEEEEEcCCCCc-----ee----------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence            99999999987651     11                            1279999999999  66  679999999999


Q ss_pred             EEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe--
Q 018591          151 KVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW--  228 (353)
Q Consensus       151 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--  228 (353)
                      ++||+++++++..+..+ ..+.++.+.+..+++++.++.+++|+++....    ..............++++.++...  
T Consensus       154 ~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (368)
T 3mmy_A          154 KFWDTRSSNPMMVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPS----EFRRIESPLKHQHRCVAIFKDKQNKP  228 (368)
T ss_dssp             EEECSSCSSCSEEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----EEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred             EEEECCCCcEEEEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccc----hhhhccccccCCCceEEEcccCCCCC
Confidence            99999999988888765 47778888888999999999999999987652    222222222222366776665554  


Q ss_pred             --EEeecCCCcEEEeeccccccceeeeeeccccce------------eEEEEEEc--CcEEEEecCCCeEEEEecCCCcc
Q 018591          229 --VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM------------AVLCVCLV--GEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       229 --l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                        +++++.||.|++|+++..... .....+..|..            .+.++.++  +++|++|+.||.|++||+.+++ 
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-  306 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-  306 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-
T ss_pred             CeEEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-
Confidence              999999999999999876321 22233444443            57777764  8899999999999999999877 


Q ss_pred             eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          293 LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       293 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                        .+..+.+|..+|++++|+|+    +++|++++.|+..+.|++...
T Consensus       307 --~~~~~~~~~~~v~~~~~s~~----g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          307 --KLKTSEQLDQPISACCFNHN----GNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             --EEEECCCCSSCEEEEEECTT----SSCEEEEECCCSTTCGGGCCT
T ss_pred             --EEEEecCCCCCceEEEECCC----CCeEEEEecccccccccccCC
Confidence              67778899999999999999    999999999986666665443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.5e-39  Score=260.44  Aligned_cols=244  Identities=23%  Similarity=0.357  Sum_probs=203.2

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      +.++..+++|...|++++|+  +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+  +.+|++++.|++|++|
T Consensus        55 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw  134 (319)
T 3frx_A           55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW  134 (319)
T ss_dssp             EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            45678899999999999996  8899999999999999999999999999999999999998  7899999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCC--------eEEEecCCCcEEEE
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNG--------LIYSGSWDKTLKVW  153 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~l~~~~~dg~v~iw  153 (353)
                      |++...                                 ...+.+|...|.++.+.|.        .+++++.|+.|++|
T Consensus       135 d~~~~~---------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w  181 (319)
T 3frx_A          135 TIKGQC---------------------------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW  181 (319)
T ss_dssp             ETTSCE---------------------------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEE
T ss_pred             ECCCCe---------------------------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE
Confidence            986432                                 1122379999999999872        79999999999999


Q ss_pred             EcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591          154 RVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       154 d~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  231 (353)
                      |+++.+....+.+|...|.+++|+++  +|++++.||.|++||+++++     ....+..+. . +.+++|+|++.++++
T Consensus       182 d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~-~-v~~~~~sp~~~~la~  254 (319)
T 3frx_A          182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----AMYTLSAQD-E-VFSLAFSPNRYWLAA  254 (319)
T ss_dssp             ETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----EEEEEECCS-C-EEEEEECSSSSEEEE
T ss_pred             ECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEecCCC-c-EEEEEEcCCCCEEEE
Confidence            99999999999999999999999443  89999999999999999886     555555543 3 599999999999998


Q ss_pred             ecCCCcEEEeeccccccceeeeee----ccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACE----TKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      ++.++ +++|++............    ...+...+.++++  +|++|++|+.||.|++||+.+.
T Consensus       255 ~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          255 ATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            87655 999999876322222111    1234455655555  6999999999999999998753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.5e-40  Score=279.65  Aligned_cols=276  Identities=16%  Similarity=0.193  Sum_probs=220.3

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .+++++|+  +++|++|+.||.|++||+.+++....+..| ..+....++  +++|++++.||.|++||++++.     .
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~  131 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----Q  131 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----E
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----e
Confidence            34578885  889999999999999999988877766666 333333444  8899999999999999988664     2


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV  171 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  171 (353)
                      ..                           .+.+|...|.+++|+|  ++|++|+.|+.|++||+++++.+..+.+|...|
T Consensus       132 ~~---------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  184 (420)
T 3vl1_A          132 RE---------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV  184 (420)
T ss_dssp             EE---------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred             ee---------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence            21                           2227999999999998  799999999999999999999999999999999


Q ss_pred             EEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---C--------------------ceeeEEEEcCCC
Q 018591          172 NGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---D--------------------VSLNSVVVSDDG  226 (353)
Q Consensus       172 ~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~--------------------~~v~~~~~~~~~  226 (353)
                      .+++|++  ..+++++.|+.|++||+++++     ....+..+.   .                    ..+.+++|+|++
T Consensus       185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          185 TDIAIIDRGRNVLSASLDGTIRLWECGTGT-----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTTTE-----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEeECCCCc-----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            9999944  389999999999999999886     444444321   1                    223556678999


Q ss_pred             CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc-EEEEecCCCeEEEEecCCCcceEEeccccC-C
Q 018591          227 KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE-FLCSGSADKSIGIWKREAFGKLCRVGAITG-H  302 (353)
Q Consensus       227 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h  302 (353)
                      +++++++.||.|++||++++..   .......|...+.++.++  +. +|++|+.||.|++||+++++.  .+..+.+ |
T Consensus       260 ~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~  334 (420)
T 3vl1_A          260 KYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--PVGEFLINE  334 (420)
T ss_dssp             EEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEEEST
T ss_pred             CEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--chhhhhccC
Confidence            9999999999999999988742   222234567788888775  55 999999999999999998753  2444554 6


Q ss_pred             CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ...|.++.+ |+    +.+|++++.||.|++|++..+..
T Consensus       335 ~~~v~~~~~-~~----~~~l~s~~~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          335 GTPINNVYF-AA----GALFVSSGFDTSIKLDIISDPES  368 (420)
T ss_dssp             TSCEEEEEE-ET----TEEEEEETTTEEEEEEEECCTTC
T ss_pred             CCCceEEEe-CC----CCEEEEecCCccEEEEeccCCCC
Confidence            778888855 56    78999999999999999987543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-39  Score=275.27  Aligned_cols=252  Identities=23%  Similarity=0.353  Sum_probs=220.9

Q ss_pred             CCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~   82 (353)
                      ..+++.+..+.+|.++|++++|++++|++|+.||.|++||+.+++.+..+.+|...|.++.|+++.+++++.||.|++||
T Consensus       160 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             SSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEe
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      ++++.....                             ...+.+|...|.++.+.++++++|+.||.|++||+++++++.
T Consensus       240 ~~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  290 (435)
T 1p22_A          240 MASPTDITL-----------------------------RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR  290 (435)
T ss_dssp             CSSSSCCEE-----------------------------EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCCCCcee-----------------------------eeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEE
Confidence            987652111                             122337999999999988999999999999999999999999


Q ss_pred             eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      .+.+|...|.++.++++.+++++.||.|++||+++++     ....+.+|...+ .+++|  ++.++++|+.||.|++||
T Consensus       291 ~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v-~~~~~--~~~~l~sg~~dg~i~vwd  362 (435)
T 1p22_A          291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-----CLRVLEGHEELV-RCIRF--DNKRIVSGAYDGKIKVWD  362 (435)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             EEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCcCcE-EEEEe--cCCEEEEEeCCCcEEEEE
Confidence            9999999999999998999999999999999999887     777888888766 88888  688999999999999999


Q ss_pred             ccccccce-----eeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591          243 GNVEIVRW-----KLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       243 ~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      +..+....     .....+.+|...+.++.+++.+|++|+.||.|++||+.+..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             HHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred             CCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence            98763111     14566778999999999999999999999999999998765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.3e-40  Score=267.05  Aligned_cols=257  Identities=16%  Similarity=0.195  Sum_probs=197.0

Q ss_pred             eeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe----CCEEEEecCCCcEEEE
Q 018591           10 AVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~w   81 (353)
                      ..+.+|.++|++++|+  |++||+|+.|++|++||+.+++  .+..+.+|...|.+++|+    +++|++++.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3567999999999996  8999999999999999998764  567889999999999995    6899999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCC
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~  157 (353)
                      |++++....                              ...+.+|...|.+++|+|    .+|++|+.|+.|++||++.
T Consensus        87 d~~~~~~~~------------------------------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           87 REENGTWEK------------------------------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             CCSSSCCCE------------------------------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             ECCCCcceE------------------------------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            998653111                              112237999999999998    3799999999999999986


Q ss_pred             ce---eeeeccccCcceEEEEEeC-------------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc
Q 018591          158 LK---CLESIKAHDDAVNGLVASK-------------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV  215 (353)
Q Consensus       158 ~~---~~~~~~~~~~~v~~i~~~~-------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  215 (353)
                      +.   ....+.+|...|.+++|++                   .+|++++.|+.|++||++...  .......+.+|...
T Consensus       137 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~l~~h~~~  214 (316)
T 3bg1_A          137 EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQKLEAHSDW  214 (316)
T ss_dssp             SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEECCBCCSSC
T ss_pred             CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceeeecccCCCc
Confidence            53   2456678999999999943                   379999999999999997542  01145567788877


Q ss_pred             eeeEEEEcCCC----CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591          216 SLNSVVVSDDG----KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       216 ~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~  289 (353)
                      + .+++|+|++    ++|++++.|++|++|++............+..|...+.+++++  +++|++++.|+.|++|+...
T Consensus       215 V-~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          215 V-RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             E-EEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             e-EEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            6 999999986    7899999999999999876311101112234567778777764  88999999999999999764


Q ss_pred             CcceEEeccc
Q 018591          290 FGKLCRVGAI  299 (353)
Q Consensus       290 ~~~~~~~~~~  299 (353)
                      .....++..+
T Consensus       294 ~g~~~~~~~~  303 (316)
T 3bg1_A          294 DGQWVCISDV  303 (316)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEeeec
Confidence            4333344333

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-39  Score=261.52  Aligned_cols=259  Identities=20%  Similarity=0.272  Sum_probs=202.7

Q ss_pred             CCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           44 PDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        44 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      .+.+++..+.+|...|.++.|++++|++++.|++|++||++.+...   ....+..                        
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~---~~~~~~~------------------------   54 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFT---LIDVLDE------------------------   54 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCE---EEEEECT------------------------
T ss_pred             cccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeE---EEEEEec------------------------
Confidence            3566788899999999999999889999999999999999765311   1111100                        


Q ss_pred             eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC-------ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEE
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD-------LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKA  192 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~i  192 (353)
                       .+|...|.+++|+|  ++|++|+.|+.|++||++.       .+++..+.+|...|.+++|++  .+|++++.|++|++
T Consensus        55 -~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~i  133 (330)
T 2hes_X           55 -TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI  133 (330)
T ss_dssp             -TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             -CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence             04999999999999  8899999999999999853       356777889999999999944  38999999999999


Q ss_pred             EeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---
Q 018591          193 WGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---  269 (353)
Q Consensus       193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---  269 (353)
                      ||++.... .......+.+|...+ .+++|+|++.+|++++.|+.|++||...+.  ......+.+|...|.++.++   
T Consensus       134 wd~~~~~~-~~~~~~~~~~h~~~v-~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          134 WETDESGE-EYECISVLQEHSQDV-KHVIWHPSEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTE  209 (330)
T ss_dssp             EECCTTCC-CCEEEEEECCCSSCE-EEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSS
T ss_pred             EeccCCCC-CeEEEEEeccCCCce-EEEEECCCCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCC
Confidence            99954320 112455677887766 999999999999999999999999987642  24556778899999888875   


Q ss_pred             -CcEEEEecCCCeEEEEecCCCcc-----eEEeccccC-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          270 -GEFLCSGSADKSIGIWKREAFGK-----LCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       270 -~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                       +.+|++|+.|++|++||+..+..     ......+.+ |...|.+++|+++    + +|++++.||.|++|+..++
T Consensus       210 ~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN----G-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT----S-CEEEEETTSCEEEEEEETT
T ss_pred             CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC----C-EEEEEeCCCEEEEEEcCCC
Confidence             45899999999999999875421     123344544 9999999999975    4 8999999999999998765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=271.46  Aligned_cols=308  Identities=13%  Similarity=0.245  Sum_probs=221.2

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----------eeEEeccCc------------eeeEEEEEe--C-
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR-----------MFTKFGHGD------------GSVKAVVTV--G-   66 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~--~-   66 (353)
                      |.+.|++++|+  +++||+|+.||.|++||+.+++           ....+.+|.            ..|.+++|+  + 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999996  8999999999999999998877           577888998            889999998  3 


Q ss_pred             -CEEEEecCCCcEEEEEcccCccceeEEeeccccccc----------eeeeecccceeEeecccceee-eeecCCceEEE
Q 018591           67 -NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD----------YLGKFMKQSNYVQTRRHHKRL-WIEHADSISCL  134 (353)
Q Consensus        67 -~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~  134 (353)
                       ..|++++.||.|++||+..+....  ....+.....          .......+.... ......+. ..+|...|.++
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRP--EGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLM-VEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEE--ECCSCC--------CCCCCSCCCCEEEEEEEE-EEEEEEEEECSCCSSCCCEE
T ss_pred             cceEEEeCCCCeEEEEecccccCCc--ceecccCccccccCcccccceEeccccchhee-eeccceEEeccCCCcceEEE
Confidence             689999999999999998654210  0000000000          000000000111 11111222 35899999999


Q ss_pred             EEeC--CeEEEecCCCcEEEEEcCC-ceeee-------eccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcc
Q 018591          135 TVYN--GLIYSGSWDKTLKVWRVAD-LKCLE-------SIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSH  201 (353)
Q Consensus       135 ~~~~--~~l~~~~~dg~v~iwd~~~-~~~~~-------~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~  201 (353)
                      +|+|  .+|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|++   ..+++++.||.|++||+++++. 
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-  261 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL-  261 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS-
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc-
Confidence            9999  788888 799999999984 44444       3678999999999943   5899999999999999998761 


Q ss_pred             cccceeeeeccCC-----------ceeeEEEEcCCCCeEEeecCCCcEEEeeccc-cccceeeeeecccccee-------
Q 018591          202 CHSLKGILEGHKD-----------VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV-EIVRWKLACETKAHEMA-------  262 (353)
Q Consensus       202 ~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~-------  262 (353)
                      .......+..|..           ..|.+++|+|++++|++++. +.|++||++. +    .....+..|...       
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN----RPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS----SCSCCEESCGGGTTTHHHH
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc----cccceeecccccccccccc
Confidence            0011456666665           14599999999999999998 9999999987 4    333444444321       


Q ss_pred             ----------EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecc-----------------------------ccCCC
Q 018591          263 ----------VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGA-----------------------------ITGHE  303 (353)
Q Consensus       263 ----------v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------------------------~~~h~  303 (353)
                                ..++++++++|++|+.||.|++||+.+++.......                             ...+.
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN  416 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccC
Confidence                      156777899999999999999999998764321100                             11345


Q ss_pred             cCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          304 GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       304 ~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      ..|.+++|+|+    +++|++++.|+ +.+|.-+
T Consensus       417 ~~i~~~~~~p~----~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          417 KKILHTAWHPK----ENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             SCCCEEEECSS----SSEEEEECSSC-EEEEECC
T ss_pred             CceeEEEECCC----CCEEEEEecce-eeeeccc
Confidence            67999999999    99999998886 7788643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4e-39  Score=265.47  Aligned_cols=298  Identities=15%  Similarity=0.123  Sum_probs=216.7

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc----eeeEEeccCceeeEEEEEe----CCEEEEecCCCcE
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDL----RMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRI   78 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i   78 (353)
                      ...+.+|.++|++++|+  +++|++|+.||.|++||+.++    +....+.+|...|.+++|+    +++|++++.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45678999999999996  889999999999999999876    4677788999999999996    6799999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEE
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd  154 (353)
                      ++||++.+......                       ........+.+|...|.+++|+|    .++++++.||.|++||
T Consensus        84 ~vwd~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd  140 (351)
T 3f3f_A           84 KLWEEDPDQEECSG-----------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD  140 (351)
T ss_dssp             EEEEECTTSCTTSS-----------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred             EEEecCCCcccccc-----------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence            99999876421000                       00011223347999999999997    4899999999999999


Q ss_pred             cCCceeeeecc-------------ccCcceEEEEEe-----CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591          155 VADLKCLESIK-------------AHDDAVNGLVAS-----KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS  216 (353)
Q Consensus       155 ~~~~~~~~~~~-------------~~~~~v~~i~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (353)
                      +++++.+..+.             .|...+.+++|.     +..+++++.++.+.+|+...++.   .....+.+|...+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~i  217 (351)
T 3f3f_A          141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAAKLPGHKSLI  217 (351)
T ss_dssp             CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEEECCCCCSCE
T ss_pred             CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeeeecCCCCcce
Confidence            98876554443             577889999993     45999999999998888776651   1355666777765


Q ss_pred             eeEEEEcCCC----CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEE----EecCCCeEEEEe
Q 018591          217 LNSVVVSDDG----KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLC----SGSADKSIGIWK  286 (353)
Q Consensus       217 v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~----~~~~dg~i~iw~  286 (353)
                       .+++|+|++    ++|++++.||.|++||++........    ..+........  .....+.    .+.....+.+|+
T Consensus       218 -~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (351)
T 3f3f_A          218 -RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS----EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS  292 (351)
T ss_dssp             -EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------------CC
T ss_pred             -eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc----CCcccceeccCCCcccccccccccccccceeeeecc
Confidence             999999998    89999999999999999876322221    11111111111  1122222    233344555555


Q ss_pred             cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      ....   ..+..+.+|...|++++|+|+    +++|++++.||.|++|++.+++....
T Consensus       293 ~~~~---~~~~~~~~h~~~v~~~~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          293 NLQV---ELLSEHDDHNGEVWSVSWNLT----GTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             SEEE---EEEEEECTTSSCEEEEEECSS----SCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cccc---cEEEEEecccccEEEEEEcCC----CCEEEEecCCCcEEEEecCcCcchhh
Confidence            4443   377788899999999999999    99999999999999999998876554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.2e-38  Score=261.46  Aligned_cols=284  Identities=19%  Similarity=0.243  Sum_probs=232.4

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccce
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENV   90 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~   90 (353)
                      |.++|.+++|+  |++++++..++.+..|+...........+|...|.+++|+  ++++++++ ||.|++||++++....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            56789999996  8999999888888888766655555556789999999998  77888888 9999999998764211


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce--eeeeccc
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK--CLESIKA  166 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~--~~~~~~~  166 (353)
                      ....                           ....+|...|.+++|+|  +++++++.||.|++||+++++  ....+..
T Consensus        87 ~~~~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  139 (337)
T 1gxr_A           87 PVSQ---------------------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             CSEE---------------------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             eeec---------------------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence            1000                           00116889999999999  789999999999999998877  5667788


Q ss_pred             cCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          167 HDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       167 ~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      |...|.+++|.+  ..+++++.||.|++||+++++     ....+..|...+ .+++|+|+++++++++.||.|++||++
T Consensus       140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~~~d~~  213 (337)
T 1gxr_A          140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----LVRQFQGHTDGA-SCIDISNDGTKLWTGGLDNTVRSWDLR  213 (337)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeeecccCce-EEEEECCCCCEEEEEecCCcEEEEECC
Confidence            999999999943  489999999999999999886     667777777766 999999999999999999999999999


Q ss_pred             ccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591          245 VEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL  322 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l  322 (353)
                      ++...    ... .+...+.++.+  +++++++++.++.|++||+.+++.    ..+..|...|.+++|+|+    +++|
T Consensus       214 ~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~l  280 (337)
T 1gxr_A          214 EGRQL----QQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYC----GKWF  280 (337)
T ss_dssp             TTEEE----EEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE----EEECCCSSCEEEEEECTT----SSEE
T ss_pred             CCceE----eee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe----EEEcCCccceeEEEECCC----CCEE
Confidence            87422    222 24455666665  588999999999999999998752    346789999999999999    9999


Q ss_pred             EEccCCCeEEEEEcCCCCCcccc
Q 018591          323 YSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       323 ~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ++++.||.|++|++.+++.+...
T Consensus       281 ~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          281 VSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEecCCCcEEEEECCCCeEEEEe
Confidence            99999999999999998776543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=259.73  Aligned_cols=258  Identities=18%  Similarity=0.267  Sum_probs=209.7

Q ss_pred             CceeeEEeccCce-eeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccce
Q 018591           45 DLRMFTKFGHGDG-SVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK  121 (353)
Q Consensus        45 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (353)
                      ..+++..+.+|.. .|.+++|+  +++|++|+.|++|++||++++......                             
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~-----------------------------   54 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS-----------------------------   54 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------------------
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------------------
Confidence            3456778888877 99999998  889999999999999999876411000                             


Q ss_pred             eeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc--eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeC
Q 018591          122 RLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL--KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGK  195 (353)
Q Consensus       122 ~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~  195 (353)
                      ....+|...|.+++|+|  ++|++|+.|+.+++||+.++  +++..+.+|...|.+++|++  ++|++++.|++|++||+
T Consensus        55 ~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~  134 (345)
T 3fm0_A           55 VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV  134 (345)
T ss_dssp             EECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             eeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence            01127999999999999  89999999999999998765  46788899999999999943  49999999999999999


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFL  273 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l  273 (353)
                      +....  ......+..|...+ .+++|+|++++|++++.|+.|++||.+.+.  ......+.+|...|.+++++  +++|
T Consensus       135 ~~~~~--~~~~~~~~~h~~~v-~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l  209 (345)
T 3fm0_A          135 DEEDE--YECVSVLNSHTQDV-KHVVWHPSQELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRL  209 (345)
T ss_dssp             CTTSC--EEEEEEECCCCSCE-EEEEECSSSSCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCC--eEEEEEecCcCCCe-EEEEECCCCCEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEE
Confidence            87641  12345667777765 999999999999999999999999988752  23445677889999888875  8899


Q ss_pred             EEecCCCeEEEEecCCCcc------------eEEeccccC-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          274 CSGSADKSIGIWKREAFGK------------LCRVGAITG-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~------------~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      ++|+.|++|++|+......            ...+..+.+ |...|.+++|+|+    +..|++++.|+.|++|+.....
T Consensus       210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~----~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL----TGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT----TCCEEEEETTSCEEEEEECTTS
T ss_pred             EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC----CCEEEEEeCCCeEEEEEeCCCC
Confidence            9999999999999743221            123334444 8899999999999    9999999999999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2e-37  Score=274.35  Aligned_cols=293  Identities=16%  Similarity=0.196  Sum_probs=230.0

Q ss_pred             CCceeeeeeCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCceeeEEeccCce---eeEEEEEe---CCEEEEecCC
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GE-FILSASQGKDIIVWQQPDLRMFTKFGHGDG---SVKAVVTV---GNKVFTAHQD   75 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~---~~~l~s~~~d   75 (353)
                      +++++..+.+|...|++++|+  ++ ++++++.||.|++||+.+++.+..+..|..   .|.+++|+   +++|++++.|
T Consensus       149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  228 (615)
T 1pgu_A          149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD  228 (615)
T ss_dssp             TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred             CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence            456788899999999999997  44 899999999999999999999999999999   99999997   5689999999


Q ss_pred             CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee---ecCCceEEEEEeC-CeEEEecCCCcEE
Q 018591           76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI---EHADSISCLTVYN-GLIYSGSWDKTLK  151 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~l~~~~~dg~v~  151 (353)
                      |.|++||+++++     .+..+.                          .   .|...|.++.|+. .++++++.|+.|+
T Consensus       229 g~i~vwd~~~~~-----~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~  277 (615)
T 1pgu_A          229 RKISCFDGKSGE-----FLKYIE--------------------------DDQEPVQGGIFALSWLDSQKFATVGADATIR  277 (615)
T ss_dssp             CCEEEEETTTCC-----EEEECC--------------------------BTTBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred             CeEEEEECCCCC-----EeEEec--------------------------ccccccCCceEEEEEcCCCEEEEEcCCCcEE
Confidence            999999998765     222210                          1   5888999999965 8999999999999


Q ss_pred             EEEcCCceeeeecccc----CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce----------
Q 018591          152 VWRVADLKCLESIKAH----DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS----------  216 (353)
Q Consensus       152 iwd~~~~~~~~~~~~~----~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------  216 (353)
                      +||+++++.+..+..+    ...+.++.+ .++.+++++.||.|++||+.+++     ....+.+|...+          
T Consensus       278 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~v~~~~~~~l~~  352 (615)
T 1pgu_A          278 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-----VLKTISGHNKGITALTVNPLIS  352 (615)
T ss_dssp             EEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-----EEEEECCCSSCEEEEETTTTEE
T ss_pred             EEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-----EEEEEeCCCCCEEEEEecCcEE
Confidence            9999999998888766    467788888 66699999999999999988654     223333322211          


Q ss_pred             ----------------------eeEEEEcCCCCeEEeecCCC--------------------------------------
Q 018591          217 ----------------------LNSVVVSDDGKWVYGGGSDG--------------------------------------  236 (353)
Q Consensus       217 ----------------------v~~~~~~~~~~~l~~~~~dg--------------------------------------  236 (353)
                                            |.+++| +++..+++++.|+                                      
T Consensus       353 ~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  431 (615)
T 1pgu_A          353 GSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI  431 (615)
T ss_dssp             EETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred             ECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence                                  133333 2234444444444                                      


Q ss_pred             ------------------------------------cEEEeeccccccceeee-eeccccceeEEEEEE--cCcEEEEec
Q 018591          237 ------------------------------------FVMGWEGNVEIVRWKLA-CETKAHEMAVLCVCL--VGEFLCSGS  277 (353)
Q Consensus       237 ------------------------------------~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~--~~~~l~~~~  277 (353)
                                                          .|++||+..+.    .. ..+..|...+.++.+  ++++|++++
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  507 (615)
T 1pgu_A          432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIAAGD  507 (615)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcc----ccccccCCccCceEEEEECCCCCEEEEcC
Confidence                                                44444444431    11 445667788888877  589999999


Q ss_pred             CCCeEEEEecCCCcceEEeccccC-CCcCeEEEEeec----------CCCCCCeEEEEccCCCeEEEEEcCCC-CCcccc
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQASP----------NAVGGGFLLYSGSLDKSLRVWWVSKQ-SSTSDS  345 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~----------~~~~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~  345 (353)
                      .||.|++||+.+++   .+..+.+ |...|++++|+|          +    +++|++++.||.|++|++.++ +.+...
T Consensus       508 ~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~  580 (615)
T 1pgu_A          508 VMGKILLYDLQSRE---VKTSRWAFRTSKINAISWKPAEKGANEEEIE----EDLVATGSLDTNIFIYSVKRPMKIIKAL  580 (615)
T ss_dssp             TTSCEEEEETTTTE---EEECCSCCCSSCEEEEEECCCC------CCS----CCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             CCCeEEEeeCCCCc---ceeEeecCCCCceeEEEEcCccccccccccC----CCEEEEEcCCCcEEEEECCCCceechhh
Confidence            99999999999877   5666777 999999999999          8    999999999999999999987 454443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-39  Score=269.64  Aligned_cols=264  Identities=17%  Similarity=0.202  Sum_probs=214.6

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY  113 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (353)
                      ..+..|+..+..+...+.+|.+.|.+++|+  +++|++|+.||+|++||+.++.     .                    
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----~--------------------  100 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----K--------------------  100 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----E--------------------
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----c--------------------
Confidence            456678888888999999999999999998  7899999999999999998765     1                    


Q ss_pred             EeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-------eeeeccccCcceEEEEEeC---CeE
Q 018591          114 VQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK-------CLESIKAHDDAVNGLVASK---GIV  181 (353)
Q Consensus       114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~---~~l  181 (353)
                             ...+..|...|.+++|+|  .++++|+.|+.+++||+.+..       ....+.+|.+.|.++.|.+   ..+
T Consensus       101 -------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l  173 (380)
T 3iz6_a          101 -------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL  173 (380)
T ss_dssp             -------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred             -------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEE
Confidence                   222337889999999999  899999999999999986532       3456788999999999933   379


Q ss_pred             EEEcCCCcEEEEeCCCCCcccccceeee-----eccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeee
Q 018591          182 YSASADGKIKAWGKELGKSHCHSLKGIL-----EGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACE  255 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  255 (353)
                      ++++.|++|++||+++++     ....+     .+|...+ .++++++ +++++++|+.|+.|++||++...   .....
T Consensus       174 ~s~s~D~~i~~wd~~~~~-----~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~  244 (380)
T 3iz6_a          174 ITGSGDQTCVLWDVTTGQ-----RISIFGSEFPSGHTADV-LSLSINSLNANMFISGSCDTTVRLWDLRITS---RAVRT  244 (380)
T ss_dssp             EEECTTSCEEEECTTTCC-----EEEEECCCSSSSCCSCE-EEEEECSSSCCEEEEEETTSCEEEEETTTTC---CCCEE
T ss_pred             EEECCCCcEEEEEcCCCc-----EEEEeecccCCCCccCe-EEEEeecCCCCEEEEEECCCeEEEEECCCCC---cceEE
Confidence            999999999999999887     33333     4566655 9999977 78999999999999999997432   34556


Q ss_pred             ccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccc----cCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591          256 TKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAI----TGHEGPVKCLQASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       256 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg  329 (353)
                      +.+|...|.++.+  ++++|++|+.||+|++||+++++....+...    ..+...|++++|+|+    +++|++|+.||
T Consensus       245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~dg  320 (380)
T 3iz6_a          245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS----GRLLFAGYSNG  320 (380)
T ss_dssp             ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS----SSEEEEECTTS
T ss_pred             ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC----CCEEEEEECCC
Confidence            6788888888777  4889999999999999999987743222111    112335899999999    99999999999


Q ss_pred             eEEEEEcCCCCCccc
Q 018591          330 SLRVWWVSKQSSTSD  344 (353)
Q Consensus       330 ~i~iw~~~~~~~~~~  344 (353)
                      .|++||+..++....
T Consensus       321 ~i~vwd~~~~~~~~~  335 (380)
T 3iz6_a          321 DCYVWDTLLAEMVLN  335 (380)
T ss_dssp             CEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCceEEE
Confidence            999999988776543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-37  Score=295.33  Aligned_cols=330  Identities=17%  Similarity=0.229  Sum_probs=255.6

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe----CCEEEEecCCC
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDS   76 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg   76 (353)
                      ..+++.+..+.+|.+.|++++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+    +..+++++.||
T Consensus       644 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~  723 (1249)
T 3sfz_A          644 AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF  723 (1249)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred             CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence            46788899999999999999996  8899999999999999999999999999999999999997    34799999999


Q ss_pred             cEEEEEcccCccce--------eEEeeccccccceeeeeccc--------------------------------------
Q 018591           77 RIRVWKVSRSSENV--------FRLVDTLPTTKDYLGKFMKQ--------------------------------------  110 (353)
Q Consensus        77 ~i~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--------------------------------------  110 (353)
                      .|++||++++....        ...+...+... .+......                                      
T Consensus       724 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  802 (1249)
T 3sfz_A          724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK  802 (1249)
T ss_dssp             CEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred             eEEEEECCCcchhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence            99999998765211        11111111111 11000000                                      


Q ss_pred             -------ceeEe-ecccce------------eeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591          111 -------SNYVQ-TRRHHK------------RLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHD  168 (353)
Q Consensus       111 -------~~~~~-~~~~~~------------~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  168 (353)
                             ...+. ......            ....+|...|.+++|+|  ..+++++.||.|++||+.++..+..+.+|.
T Consensus       803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~  882 (1249)
T 3sfz_A          803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL  882 (1249)
T ss_dssp             CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc
Confidence                   00000 000001            11127788899999998  889999999999999999999999999999


Q ss_pred             cceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCc----------------------------------------------
Q 018591          169 DAVNGLVASKG--IVYSASADGKIKAWGKELGKS----------------------------------------------  200 (353)
Q Consensus       169 ~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~----------------------------------------------  200 (353)
                      ..|.+++|+++  .+++++.||.|++||+.....                                              
T Consensus       883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (1249)
T 3sfz_A          883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA  962 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred             cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccC
Confidence            99999999433  899999999999998542100                                              


Q ss_pred             ----------------------------ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceee
Q 018591          201 ----------------------------HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       201 ----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  252 (353)
                                                  ........+.+|...+ .+++|+|+++++++++.||.|++||+.++.    .
T Consensus       963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~----~ 1037 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV-RHIQFTADGKTLISSSEDSVIQVWNWQTGD----Y 1037 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC-CCEEECSSSSCEEEECSSSBEEEEETTTTE----E
T ss_pred             cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce-EEEEECCCCCEEEEEcCCCEEEEEECCCCc----e
Confidence                                        0011223344566655 999999999999999999999999999873    2


Q ss_pred             eeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          253 ACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       253 ~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                      . ....|...+.++.+. +..+++++.||.|++||+.+++   .+..+.+|.+.|++++|+|+    +++|++++.||+|
T Consensus      1038 ~-~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v 1109 (1249)
T 3sfz_A         1038 V-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR---IERDFTCHQGTVLSCAISSD----ATKFSSTSADKTA 1109 (1249)
T ss_dssp             E-CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC---CCEEEECCSSCCCCEEECSS----SSSCEEECCSSCC
T ss_pred             E-EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc---eeEEEcccCCcEEEEEECCC----CCEEEEEcCCCcE
Confidence            2 345778888888886 6678999999999999999887   56667889999999999999    9999999999999


Q ss_pred             EEEEcCCCCCccccc
Q 018591          332 RVWWVSKQSSTSDSE  346 (353)
Q Consensus       332 ~iw~~~~~~~~~~~~  346 (353)
                      ++||+.+++.+....
T Consensus      1110 ~iwd~~~~~~~~~l~ 1124 (1249)
T 3sfz_A         1110 KIWSFDLLSPLHELK 1124 (1249)
T ss_dssp             CEECSSSSSCSBCCC
T ss_pred             EEEECCCcceeeeec
Confidence            999999988776655

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-37  Score=259.94  Aligned_cols=234  Identities=21%  Similarity=0.405  Sum_probs=197.0

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .|++++|+  +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+  +++|++++.|++|++||+++++     .
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-----~  199 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-----C  199 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----E
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-----e
Confidence            49999996  8999999999999999999999999999999999999997  7899999999999999998765     1


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec------
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI------  164 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~------  164 (353)
                      ...+                            .+...+.+++++|   .++++|+.|+.|++||+++++.+..+      
T Consensus       200 ~~~~----------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~  251 (393)
T 1erj_A          200 SLTL----------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES  251 (393)
T ss_dssp             EEEE----------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred             EEEE----------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC
Confidence            1111                            4566799999987   78999999999999999998877766      


Q ss_pred             -cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcc-------cccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591          165 -KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSH-------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS  234 (353)
Q Consensus       165 -~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  234 (353)
                       .+|...|.+++|++  ..+++++.|+.|++||+++....       .......+.+|...+ .+++|+|++.+|++|+.
T Consensus       252 ~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~sgs~  330 (393)
T 1erj_A          252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV-LSVATTQNDEYILSGSK  330 (393)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCE-EEEEECGGGCEEEEEET
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE-EEEEECCCCCEEEEEeC
Confidence             57899999999943  38999999999999999864311       112345667787766 99999999999999999


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEEc--------CcEEEEecCCCeEEEEecCC
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--------GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~iw~~~~  289 (353)
                      |+.|++||..++    .....+.+|...+.++.+.        +++|++|+.||+|++|++..
T Consensus       331 D~~v~iwd~~~~----~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          331 DRGVLFWDKKSG----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEEECCCC----eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999999999987    4566778899999988864        57999999999999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=283.88  Aligned_cols=197  Identities=10%  Similarity=0.098  Sum_probs=165.4

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCc
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      ...||.+.|++++|+  +++||+|+.||+|++|+..+.+....+. |...|.+++|+ +++|++++.|++|++||+++++
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc
Confidence            345899999999996  8899999999999999998887766654 67899999999 7789999999999999998765


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceee----
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCL----  161 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~----  161 (353)
                           .+..+                            .|...|++++|+|  +++++|+.||.|++||+++++..    
T Consensus        91 -----~~~~~----------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           91 -----VLTTV----------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             -----EEEEE----------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             -----EEEEE----------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence                 22211                            3667899999999  89999999999999999987754    


Q ss_pred             -------eeccccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeecc-----------------CC
Q 018591          162 -------ESIKAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGH-----------------KD  214 (353)
Q Consensus       162 -------~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~  214 (353)
                             ..+.+|.++|++++|++   +.+++++.||.| +||+++++     ....+..|                 ..
T Consensus       138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~h~  211 (902)
T 2oaj_A          138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-----IKQSFIYELPPFAPGGDFSEKTNEKRT  211 (902)
T ss_dssp             CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-----EEEEECCCBCTTCCCSTTCCCTTSCBC
T ss_pred             ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-----eEEEEecccCCcCCCcccccccccccC
Confidence                   34467899999999965   389999999999 99999876     44444443                 11


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  247 (353)
                      ..|.+++|+|++++|++++.||.|++||+++++
T Consensus       212 ~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          212 PKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             CCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            335999999999999999999999999998764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.5e-37  Score=248.33  Aligned_cols=253  Identities=22%  Similarity=0.340  Sum_probs=208.8

Q ss_pred             ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      ......+.+|...|.+++|+  +++|++++.||.|++|++.++.     .                           ...
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----~---------------------------~~~   60 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----F---------------------------EKT   60 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----E---------------------------EEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----c---------------------------chh
Confidence            45667788999999999998  7899999999999999997765     1                           122


Q ss_pred             eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCC
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~  199 (353)
                      +.+|...|.+++|+|  ++|++++.|+.|++||+++++++..+.+|...|.++.|++  +.+++++.|+.|++||+++++
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  140 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK  140 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE
Confidence            237999999999999  8999999999999999999999999999999999999943  499999999999999999887


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEec
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGS  277 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~  277 (353)
                           ....+..|...+ .+++|+|+++++++++.||.|++||++++.....   ....+...+.++.  +++++|++++
T Consensus       141 -----~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          141 -----CLKTLPAHSDPV-SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT---LIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             -----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             -----EEEEecCCCCcE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE---EeccCCCceEEEEECCCCCEEEEEc
Confidence                 667777777765 9999999999999999999999999988732211   1233444555554  4689999999


Q ss_pred             CCCeEEEEecCCCcceEEeccccCCCcCeEE--EEee-cCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKC--LQAS-PNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~--~~~~-~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .||.|++||+.+++   .+..+.+|...+..  ..++ ++    +.+|++|+.||.|++||+.+++.+....
T Consensus       212 ~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~  276 (312)
T 4ery_A          212 LDNTLKLWDYSKGK---CLKTYTGHKNEKYCIFANFSVTG----GKWIVSGSEDNLVYIWNLQTKEIVQKLQ  276 (312)
T ss_dssp             TTTEEEEEETTTTE---EEEEECSSCCSSSCCCEEEECSS----SCEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred             CCCeEEEEECCCCc---EEEEEEecCCceEEEEEEEEeCC----CcEEEEECCCCEEEEEECCCchhhhhhh
Confidence            99999999999877   55666777665432  2344 45    8899999999999999999988776554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-37  Score=254.99  Aligned_cols=252  Identities=19%  Similarity=0.223  Sum_probs=210.3

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      +....+.+|...|.+++|+  +.+|++|+.||+|++||..+...     .                           ..+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----~---------------------------~~~  102 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----E---------------------------HAV  102 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----E---------------------------EEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----c---------------------------eEE
Confidence            5667889999999999998  78999999999999999877651     1                           122


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEe
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWG  194 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd  194 (353)
                      ..|...|.+++|+|  ..+++|+.|+.+++|++...      .....+..|...|.++.|.+  ..+++++.|++|++||
T Consensus       103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd  182 (354)
T 2pbi_B          103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD  182 (354)
T ss_dssp             ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence            25778899999999  89999999999999998643      33456678999999999943  3899999999999999


Q ss_pred             CCCCCcccccceeeeeccCCceeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C
Q 018591          195 KELGKSHCHSLKGILEGHKDVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G  270 (353)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  270 (353)
                      +++++     ....+.+|...+ .+++++|  ++++|++|+.||.|++||++++    .....+..|...+.++.++  +
T Consensus       183 ~~~~~-----~~~~~~~h~~~v-~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~  252 (354)
T 2pbi_B          183 VESGQ-----LLQSFHGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSG  252 (354)
T ss_dssp             TTTCC-----EEEEEECCSSCE-EEEEECCCSSCCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCCe-----EEEEEcCCCCCe-EEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCC
Confidence            99987     778888888776 8999987  5689999999999999999987    4566677888889888774  8


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ++|++|+.|++|++||++..+..... ....+...+.+++|+|+    +.+|++|+.|+.|++||+.+++.+...
T Consensus       253 ~~l~s~s~D~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          253 DAFASGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLS----GRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEE-cCCCcccceeEEEEeCC----CCEEEEEECCCcEEEEECCCCceEEEE
Confidence            89999999999999999886532221 22234457899999999    999999999999999999888766544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.2e-38  Score=256.96  Aligned_cols=251  Identities=19%  Similarity=0.205  Sum_probs=197.0

Q ss_pred             EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591           51 KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA  128 (353)
Q Consensus        51 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (353)
                      .+.+|...|.+++|+  +++|++|+.|++|++||++++...   .                           ...+.+|.
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---~---------------------------~~~l~gH~   57 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---L---------------------------IADLRGHE   57 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---E---------------------------EEEEECCS
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---E---------------------------EEEEcCCC
Confidence            456899999999998  899999999999999999765311   1                           12234899


Q ss_pred             CceEEEEEeC----CeEEEecCCCcEEEEEcCCc--eeeeeccccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCC
Q 018591          129 DSISCLTVYN----GLIYSGSWDKTLKVWRVADL--KCLESIKAHDDAVNGLVASK----GIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       129 ~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~  198 (353)
                      ..|.+++|++    ++|++|+.|++|++||++++  +....+.+|...|.+++|++    .++++++.|+.|++||++..
T Consensus        58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            9999999963    78999999999999999876  45667788999999999943    38999999999999999875


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCC-----------------CCeEEeecCCCcEEEeeccccccceeeeeeccccce
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDD-----------------GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                      ..  ......+.+|...+ .+++|+|+                 +++|++|+.|+.|++||++... .+.....+.+|..
T Consensus       138 ~~--~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~  213 (316)
T 3bg1_A          138 GQ--WEVKKINNAHTIGC-NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSD  213 (316)
T ss_dssp             SC--EEECCBTTSSSSCB-CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSS
T ss_pred             CC--cceeeeeccccCCc-ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCC
Confidence            31  11234455676655 89999997                 4789999999999999996531 2234556788999


Q ss_pred             eEEEEEEc--C----cEEEEecCCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          262 AVLCVCLV--G----EFLCSGSADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       262 ~v~~~~~~--~----~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      .|.+++++  +    .+|++|+.|++|++|++.+... ......+.+|...|.+++|+|+    +++|++++.||+|++|
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~----g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT----ANILAVSGGDNKVTLW  289 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT----TCCEEEEESSSCEEEE
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC----CCEEEEEcCCCeEEEE
Confidence            99999885  3    6899999999999999986321 1112234568899999999999    9999999999999999


Q ss_pred             EcCCC
Q 018591          335 WVSKQ  339 (353)
Q Consensus       335 ~~~~~  339 (353)
                      +....
T Consensus       290 ~~~~~  294 (316)
T 3bg1_A          290 KESVD  294 (316)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            98643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-37  Score=281.50  Aligned_cols=331  Identities=10%  Similarity=0.094  Sum_probs=228.8

Q ss_pred             eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC------------------ceeeEEEEEe--C
Q 018591           10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG------------------DGSVKAVVTV--G   66 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~--~   66 (353)
                      ..+++|.++|++++|+   +..|++|+.||.| +||+.+++.+..+..|                  ...|.+++|+  +
T Consensus       145 ~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg  223 (902)
T 2oaj_A          145 FFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS  223 (902)
T ss_dssp             TCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred             cccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence            3457899999999997   3689999999999 9999999999888765                  5779999998  7


Q ss_pred             CEEEEecCCCcEEEEEcccCccceeEEeecccc-------------cccee--eeec---cc--ceeEeec-c------c
Q 018591           67 NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPT-------------TKDYL--GKFM---KQ--SNYVQTR-R------H  119 (353)
Q Consensus        67 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~---~~--~~~~~~~-~------~  119 (353)
                      .+|++++.||.|++||+++++....+.+.....             ....+  ..+.   .+  ...+... .      .
T Consensus       224 ~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~  303 (902)
T 2oaj_A          224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ  303 (902)
T ss_dssp             SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred             CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence            899999999999999998765211101100000             00001  0110   00  0111111 0      0


Q ss_pred             c-----------------------------eeeee-ecCCceEEEEEeC------------CeEEEecCCCcEEEEEcCC
Q 018591          120 H-----------------------------KRLWI-EHADSISCLTVYN------------GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus       120 ~-----------------------------~~~~~-~~~~~i~~~~~~~------------~~l~~~~~dg~v~iwd~~~  157 (353)
                      .                             .+.+. .+...|..+.+.+            ..+++++.||.|++||+.+
T Consensus       304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~  383 (902)
T 2oaj_A          304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS  383 (902)
T ss_dssp             CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred             eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence            1                             11221 3566777777633            2688889999999999977


Q ss_pred             ceeeee-------ccccCcceEEEEE----------------------------------eC--CeEEEEcCCCcEEEEe
Q 018591          158 LKCLES-------IKAHDDAVNGLVA----------------------------------SK--GIVYSASADGKIKAWG  194 (353)
Q Consensus       158 ~~~~~~-------~~~~~~~v~~i~~----------------------------------~~--~~l~~~~~dg~i~iwd  194 (353)
                      +.....       +..|...|+++++                                  ++  +.+++|+.|++|++||
T Consensus       384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd  463 (902)
T 2oaj_A          384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD  463 (902)
T ss_dssp             CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred             CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence            643322       3334455555444                                  22  3899999999999999


Q ss_pred             CCCCCccccccee-ee-----eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-------------------
Q 018591          195 KELGKSHCHSLKG-IL-----EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-------------------  249 (353)
Q Consensus       195 ~~~~~~~~~~~~~-~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------  249 (353)
                      +.++......... .+     .+|...+ .+++|+|++++|++|+.||+|++||+.+++..                   
T Consensus       464 ~~~g~~~~~~~~~~~l~~~~~~~h~~~V-~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (902)
T 2oaj_A          464 ASHGDIQDNASFEVNLSRTLNKAKELAV-DKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS  542 (902)
T ss_dssp             SSCCTTTTTBCEEEEHHHHTTCSSSCCE-EEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred             CCCccccCCceEEeechhhcCCCCCCce-eEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence            9887521100111 01     1566555 99999999999999999999999999865210                   


Q ss_pred             ----------------------eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceE--Eecccc-CC
Q 018591          250 ----------------------WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLC--RVGAIT-GH  302 (353)
Q Consensus       250 ----------------------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~-~h  302 (353)
                                            +.+...+.+|...|.+++++  | +||+|+.|++|++||+++.....  .+..+. +|
T Consensus       543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh  621 (902)
T 2oaj_A          543 LNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ  621 (902)
T ss_dssp             GGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred             ccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence                                  12345667788888887764  8 99999999999999998765321  223554 89


Q ss_pred             CcCeEEEEee-----cCCCCCCeEEEEccCCCeEEEEEc---CCCCCccc
Q 018591          303 EGPVKCLQAS-----PNAVGGGFLLYSGSLDKSLRVWWV---SKQSSTSD  344 (353)
Q Consensus       303 ~~~v~~~~~~-----~~~~~~~~~l~s~~~dg~i~iw~~---~~~~~~~~  344 (353)
                      .+.|++++|+     ||... +.+|++|+.|++|++||+   .+++...+
T Consensus       622 ~~~V~sv~Fs~~~~~~Dg~~-~~~l~sgs~D~tv~~wd~~p~~~g~~~~~  670 (902)
T 2oaj_A          622 SACVTCIEFVIMEYGDDGYS-SILMVCGTDMGEVITYKILPASGGKFDVQ  670 (902)
T ss_dssp             CCCEEEEEEEEEECTTSSSE-EEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred             ccceEEEEEEEEecCCCCCc-ceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence            9999999999     87110 489999999999999999   56554433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.5e-37  Score=251.83  Aligned_cols=247  Identities=21%  Similarity=0.292  Sum_probs=196.4

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      +++...+.+|...|++++|+  +.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+  +++|++++.|++|++|
T Consensus        66 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w  145 (343)
T 2xzm_R           66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW  145 (343)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred             ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence            45678899999999999996  8899999999999999999999999999999999999998  7899999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC------------CeEEEecCCCc
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------------GLIYSGSWDKT  149 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~l~~~~~dg~  149 (353)
                      |+....     ......                         ..+|...|.++.|+|            .++++++.||.
T Consensus       146 d~~~~~-----~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  195 (343)
T 2xzm_R          146 NILGEC-----KFSSAE-------------------------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR  195 (343)
T ss_dssp             ESSSCE-----EEECCT-------------------------TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE
T ss_pred             eccCCc-----eeeeec-------------------------ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE
Confidence            987432     110000                         016888999999988            26999999999


Q ss_pred             EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          150 LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      |++|| .+.+....+.+|...|.+++|+++  +|++++.||.|++||+.....    ....+. +... |.+++|+|++.
T Consensus       196 i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~----~~~~~~-~~~~-v~~v~~sp~~~  268 (343)
T 2xzm_R          196 LKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY----PQREFD-AGST-INQIAFNPKLQ  268 (343)
T ss_dssp             EEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS----CSEEEE-CSSC-EEEEEECSSSC
T ss_pred             EEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc----cceeec-CCCc-EEEEEECCCCC
Confidence            99999 456777888899999999999443  899999999999999954431    222332 2223 59999999998


Q ss_pred             eEEeecCCCcEEEeeccccccceeeee---------eccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLAC---------ETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      +++++ .|+.|++|++.+.........         ...+|...+.+++++  +++|++|+.||.|++|+++++
T Consensus       269 ~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          269 WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            77655 577899999987643221111         112566777777764  889999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=253.26  Aligned_cols=253  Identities=18%  Similarity=0.243  Sum_probs=205.2

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe----CCEEEEecCCCc
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSR   77 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~   77 (353)
                      |+++..+.+|.++|++++|+  +++|++|+.||.|++||+.  +++.+..+..|...|.+++|+    +++|++++.||.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            46788999999999999996  8899999999999999997  667888899999999999996    789999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEE
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVW  153 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iw  153 (353)
                      |++||++++...   .                           ...+..|...|.+++|+|    .++++++.|+.|++|
T Consensus        81 v~iwd~~~~~~~---~---------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~  130 (379)
T 3jrp_A           81 VLIWKEENGRWS---Q---------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  130 (379)
T ss_dssp             EEEEEEETTEEE---E---------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             EEEEEcCCCcee---E---------------------------eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence            999999876411   1                           122236899999999997    489999999999999


Q ss_pred             EcCCce--eeeeccccCcceEEEEEeC---------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591          154 RVADLK--CLESIKAHDDAVNGLVASK---------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS  216 (353)
Q Consensus       154 d~~~~~--~~~~~~~~~~~v~~i~~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (353)
                      |+++..  ....+..|...|.+++|.+               ..+++++.||.|++||++.... ...+...+.+|...+
T Consensus       131 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~h~~~v  209 (379)
T 3jrp_A          131 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWV  209 (379)
T ss_dssp             ECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCE
T ss_pred             ecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-ceeeEEEEecccCcE
Confidence            998763  3445678999999999943               4899999999999999987651 122445667777765


Q ss_pred             eeEEEEcCC---CCeEEeecCCCcEEEeeccccccce-eeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591          217 LNSVVVSDD---GKWVYGGGSDGFVMGWEGNVEIVRW-KLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       217 v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                       .+++|+|+   +++|++++.||.|++||++.+.... ........|...+.++.+  ++++|++++.||.|++|++...
T Consensus       210 -~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          210 -RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             -EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             -eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence             99999999   8999999999999999998863221 223333446777777766  5889999999999999998743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-36  Score=250.48  Aligned_cols=290  Identities=10%  Similarity=0.050  Sum_probs=207.8

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRI   78 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i   78 (353)
                      .+.+++..+.+|.++|++++|+  |++|++|+.|| +++||+.+++.......+.  +..+.+.  ++.+ ++++.|++|
T Consensus         7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A            7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC--CCEEEECTTSSEEEEECSSTTEE
T ss_pred             cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC--eEEEEEcCCCCEEEEEECCccEE
Confidence            4566777889999999999996  88999988775 7899999888776655443  4445554  6665 578888999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~  158 (353)
                      ++||..+++     .+..+                            .+...|.++.++++.++++. |+.|++||+.++
T Consensus        84 ~iWd~~~~~-----~~~~~----------------------------~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~  129 (355)
T 3vu4_A           84 HIWDDVKKQ-----DVSRI----------------------------KVDAPVKDLFLSREFIVVSY-GDVISVFKFGNP  129 (355)
T ss_dssp             EEEETTTTE-----EEEEE----------------------------ECSSCEEEEEECSSEEEEEE-TTEEEEEESSTT
T ss_pred             EEEECCCCc-----EEEEE----------------------------ECCCceEEEEEcCCEEEEEE-cCEEEEEECCCC
Confidence            999998775     22221                            46678999999997766654 789999999988


Q ss_pred             -eeeeeccccCcceEEEEEeCCeEEE--EcCCCcEEEEeCCCCCcc----------cccc-eeeeeccCCceeeEEEEcC
Q 018591          159 -KCLESIKAHDDAVNGLVASKGIVYS--ASADGKIKAWGKELGKSH----------CHSL-KGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       159 -~~~~~~~~~~~~v~~i~~~~~~l~~--~~~dg~i~iwd~~~~~~~----------~~~~-~~~~~~~~~~~v~~~~~~~  224 (353)
                       +.+..+..   +...+++.++.++.  ++.||.|++||++++...          ...+ ...+.+|...+ .+++|+|
T Consensus       130 ~~~~~~~~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v-~~~~~s~  205 (355)
T 3vu4_A          130 WKRITDDIR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI-KMVRLNR  205 (355)
T ss_dssp             CCBSSCCEE---EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE-EEEEECT
T ss_pred             ceeeEEecc---CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce-EEEEECC
Confidence             77776655   33344455576666  588999999999875310          0011 56778888876 9999999


Q ss_pred             CCCeEEeecCCCc-EEEeeccccccceeeeeecc-c-cceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceE--Eec
Q 018591          225 DGKWVYGGGSDGF-VMGWEGNVEIVRWKLACETK-A-HEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLC--RVG  297 (353)
Q Consensus       225 ~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~-~-~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~--~~~  297 (353)
                      ++++|++++.|++ |++||++++    +....+. + |...+.+++++  +++|++++.|++|++||++......  .+.
T Consensus       206 ~g~~l~s~s~d~~~v~iwd~~~~----~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~  281 (355)
T 3vu4_A          206 KSDMVATCSQDGTIIRVFKTEDG----VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALK  281 (355)
T ss_dssp             TSSEEEEEETTCSEEEEEETTTC----CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETT
T ss_pred             CCCEEEEEeCCCCEEEEEECCCC----cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccc
Confidence            9999999999998 999999987    4455555 4 78888888775  8899999999999999997653110  100


Q ss_pred             c------------------ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          298 A------------------ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       298 ~------------------~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      .                  ...+......++|+|+    +++|++++.||.+++|++..++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d----~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          282 GWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE----SSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             TTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS----SEEEEEETTTTEEEEEEEEEETTT
T ss_pred             ceeeccccccccceeEEEeccCCCCCceEEEEeCC----CCEEEEEeCCCeEEEEEEEcCCCC
Confidence            0                  0112233477999999    999999999999999998875543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-37  Score=260.56  Aligned_cols=284  Identities=15%  Similarity=0.185  Sum_probs=220.0

Q ss_pred             ceEEEEECCc---EEEEEeCCCcEEEEeCCCc----eeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCc
Q 018591           18 SVSSLALCGE---FILSASQGKDIIVWQQPDL----RMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        18 ~v~~~~~~~~---~l~s~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      ....++++++   ++++++.||.|+||++...    +.+..+.+|.+.|.+++|+   +++|++++.||.|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            3445677644   4445788999999998654    2345677899999999996   6799999999999999998764


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      ...     .                    .......+.+|...|.+++|+|   .+|++++.||.|++||+++++.+..+
T Consensus       116 ~~~-----~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A          116 LVL-----P--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             CSS-----C--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             Ccc-----c--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence            110     0                    0012334458999999999998   48999999999999999999999998


Q ss_pred             --cccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeee-eccCCceeeEEEEcCCCCeEEee---cCCC
Q 018591          165 --KAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGIL-EGHKDVSLNSVVVSDDGKWVYGG---GSDG  236 (353)
Q Consensus       165 --~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg  236 (353)
                        ..|...|.+++|++  ..+++++.||.|++||+++++     ....+ ..|....+..++|+|+++++++|   +.|+
T Consensus       171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~  245 (402)
T 2aq5_A          171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER  245 (402)
T ss_dssp             CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred             ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCc
Confidence              78999999999943  489999999999999999887     55666 67777655999999999999999   8999


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEE-EecCCCeEEEEecCCCcc-eEEeccccCCCcCeEEEEee
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLC-SGSADKSIGIWKREAFGK-LCRVGAITGHEGPVKCLQAS  312 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~  312 (353)
                      .|++||++.........  ...+...+.++.+  ++++|+ +|+.||.|++||+.+++. ...+..+. |..+|.+++|+
T Consensus       246 ~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~s  322 (402)
T 2aq5_A          246 QVALWDTKHLEEPLSLQ--ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYM  322 (402)
T ss_dssp             EEEEEETTBCSSCSEEE--ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEEC
T ss_pred             eEEEEcCccccCCceEE--eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEe
Confidence            99999998864321111  1234444555554  577775 566899999999998774 33343333 67899999999


Q ss_pred             cCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          313 PNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       313 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      |+    +.++++  .|+.+++|++.++.
T Consensus       323 p~----~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          323 PK----RGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             CG----GGSCGG--GTEEEEEEEEETTE
T ss_pred             cc----ccccee--cceeEEEEEcCCCc
Confidence            99    887764  56799999998754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-37  Score=254.93  Aligned_cols=256  Identities=18%  Similarity=0.213  Sum_probs=210.7

Q ss_pred             ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      |+++..+.+|...|.+++|+  +++|++++.||.|++||++.....   .                           ...
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~---------------------------~~~   50 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---L---------------------------IDT   50 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE---E---------------------------EEE
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce---e---------------------------eeE
Confidence            34566788999999999998  889999999999999999744311   1                           222


Q ss_pred             eeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEe----CCeEEEEcCCCcEEEE
Q 018591          124 WIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVAS----KGIVYSASADGKIKAW  193 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~----~~~l~~~~~dg~i~iw  193 (353)
                      +.+|...|++++|++    .+|++++.||.|++||+++++  .+..+..|...|.+++|.    +..+++++.|+.|++|
T Consensus        51 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~  130 (379)
T 3jrp_A           51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  130 (379)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence            337999999999973    799999999999999999887  777888899999999993    4589999999999999


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcC-------------CCCeEEeecCCCcEEEeeccccccceeeeeeccccc
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSD-------------DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE  260 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  260 (353)
                      |++....   .....+..|...+ .+++|+|             ++.++++++.||.|++||++.+.........+..|.
T Consensus       131 d~~~~~~---~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~  206 (379)
T 3jrp_A          131 EFKENGT---TSPIIIDAHAIGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  206 (379)
T ss_dssp             ECCTTSC---CCEEEEECCTTCE-EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             ecCCCCc---eeeEEecCCCCce-EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence            9988741   1233455666665 9999999             699999999999999999988766666777788888


Q ss_pred             eeEEEEEEc-----CcEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEE
Q 018591          261 MAVLCVCLV-----GEFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRV  333 (353)
Q Consensus       261 ~~v~~~~~~-----~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~i  333 (353)
                      ..+.++.++     +++|++++.||.|++||+.+++..  ..+.....|...|++++|+|+    +++|++++.||.|++
T Consensus       207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~i  282 (379)
T 3jrp_A          207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTL  282 (379)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEESSSSEEE
T ss_pred             CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC----CCEEEEecCCCcEEE
Confidence            888888775     679999999999999999986422  233344568899999999999    999999999999999


Q ss_pred             EEcCCC
Q 018591          334 WWVSKQ  339 (353)
Q Consensus       334 w~~~~~  339 (353)
                      |++...
T Consensus       283 w~~~~~  288 (379)
T 3jrp_A          283 WKENLE  288 (379)
T ss_dssp             EEEEET
T ss_pred             EeCCCC
Confidence            999854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.6e-36  Score=250.39  Aligned_cols=250  Identities=15%  Similarity=0.198  Sum_probs=209.3

Q ss_pred             CCCCceeeeeeC-ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEE
Q 018591            3 CKSHRSLAVLSG-HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIR   79 (353)
Q Consensus         3 ~~~~~~~~~l~~-h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~   79 (353)
                      ..+++....+.. |...|++++|+  +++|++|+.||.|++||+.+++.+..+..|...|.++.|+++.+++++.||.|+
T Consensus       120 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~  199 (401)
T 4aez_A          120 ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIH  199 (401)
T ss_dssp             TTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEE
Confidence            356677777776 89999999996  889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      +||++....                               ....+.+|...|.+++|++  .++++|+.||.|++||+++
T Consensus       200 i~d~~~~~~-------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          200 HHDVRIANH-------------------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             EEETTSSSC-------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             EEecccCcc-------------------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence            999985431                               1223347999999999998  7999999999999999999


Q ss_pred             ceeeeeccccCcceEEEEEeC---CeEEEEc--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-
Q 018591          158 LKCLESIKAHDDAVNGLVASK---GIVYSAS--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-  231 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-  231 (353)
                      ++++..+..|...|.+++|++   ..+++++  .|+.|++||+++++     ....+.. ... +.+++|+|+++++++ 
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----~~~~~~~-~~~-v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----RVNTVDA-GSQ-VTSLIWSPHSKEIMST  321 (401)
T ss_dssp             SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----EEEEEEC-SSC-EEEEEECSSSSEEEEE
T ss_pred             CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----EEEEEeC-CCc-EEEEEECCCCCeEEEE
Confidence            999999999999999999944   2666655  79999999999887     5555543 333 599999999999999 


Q ss_pred             -ecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcc
Q 018591          232 -GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       232 -~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                       |+.||.|++||+..+..  .....+.+|...+.++.+  ++.+|++++.||.|++|++.+++.
T Consensus       322 ~g~~dg~i~v~~~~~~~~--~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGL--TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             ECTTTCEEEEEEEETTEE--EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred             eecCCCcEEEEecCCccc--eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence             66899999999987532  233345678888877766  488999999999999999998774

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.5e-35  Score=250.09  Aligned_cols=247  Identities=17%  Similarity=0.281  Sum_probs=208.3

Q ss_pred             CCCCceeeeee--CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcE
Q 018591            3 CKSHRSLAVLS--GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRI   78 (353)
Q Consensus         3 ~~~~~~~~~l~--~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i   78 (353)
                      ..+++.++.+.  +|.+.|++|+|+  |++|++|+.||+|++||+++++.+..+.+|...+.++.+++..|++|+.|+.+
T Consensus       132 ~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i  211 (420)
T 4gga_A          132 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI  211 (420)
T ss_dssp             TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCce
Confidence            35677776654  678899999996  89999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~  156 (353)
                      ++||.......                               ...+.+|...+..+.+.+  .++++++.|+.+++||..
T Consensus       212 ~~~d~~~~~~~-------------------------------~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~  260 (420)
T 4gga_A          212 HHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  260 (420)
T ss_dssp             EEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             eEeeeccccee-------------------------------eEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence            99998765421                               223347999999999998  899999999999999998


Q ss_pred             Cce----eeeeccccCcceEEEEEeC---CeEEE--EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          157 DLK----CLESIKAHDDAVNGLVASK---GIVYS--ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       157 ~~~----~~~~~~~~~~~v~~i~~~~---~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      +++    .+.....|...|.+++|.+   +.+++  |+.|++|++||+.++.     ....+..+..  +.++.|+|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-----~~~~~~~~~~--v~~~~~~~~~~  333 (420)
T 4gga_A          261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLSAVDAHSQ--VCSILWSPHYK  333 (420)
T ss_dssp             CCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-----EEEEEECSSC--EEEEEEETTTT
T ss_pred             cccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-----cceeeccccc--eeeeeecCCCC
Confidence            765    3455677899999999933   35554  5679999999999987     5555555543  48999999999


Q ss_pred             eEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591          228 WVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       228 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      .+++++  .|+.|++||+.++    +....+.+|...|.+++++  |++|++|+.|++|++||+....
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~----~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             eEEEEEecCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            887754  7999999999987    5677788999999988874  8899999999999999998755

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=258.25  Aligned_cols=264  Identities=12%  Similarity=0.160  Sum_probs=205.5

Q ss_pred             EEeCCCceeeEEe-ccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEe
Q 018591           40 VWQQPDLRMFTKF-GHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQ  115 (353)
Q Consensus        40 vwd~~~~~~~~~~-~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (353)
                      .|+ .+++.+..+ .+|.+.|.+++|+   +++|++|+.||+|++||+.+.....  ..                     
T Consensus        47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~---------------------  102 (437)
T 3gre_A           47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--VY---------------------  102 (437)
T ss_dssp             GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--CC---------------------
T ss_pred             ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--cc---------------------
Confidence            488 567888888 8999999999997   4699999999999999997722100  00                     


Q ss_pred             ecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC---Cceeeeecc----------c--cCcceEEEEE--
Q 018591          116 TRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA---DLKCLESIK----------A--HDDAVNGLVA--  176 (353)
Q Consensus       116 ~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~---~~~~~~~~~----------~--~~~~v~~i~~--  176 (353)
                          ......+|...|.+++|++  ++|++|+.||.|++||++   +++....+.          .  +...+.++.+  
T Consensus       103 ----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  178 (437)
T 3gre_A          103 ----SSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV  178 (437)
T ss_dssp             ----SCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred             ----ceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence                0001116899999999999  889999999999999995   444333322          1  4556677764  


Q ss_pred             e--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeec--cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceee
Q 018591          177 S--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEG--HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       177 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  252 (353)
                      .  +..+++++.|+.|++||+++++     ....+..  |...+ .+++|+|++++|++++.||.|++||++.+    ..
T Consensus       179 ~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~  248 (437)
T 3gre_A          179 NEEKSLLVALTNLSRVIIFDIRTLE-----RLQIIENSPRHGAV-SSICIDEECCVLILGTTRGIIDIWDIRFN----VL  248 (437)
T ss_dssp             CSSCEEEEEEETTSEEEEEETTTCC-----EEEEEECCGGGCCE-EEEEECTTSCEEEEEETTSCEEEEETTTT----EE
T ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCe-----eeEEEccCCCCCce-EEEEECCCCCEEEEEcCCCeEEEEEcCCc----cE
Confidence            2  4499999999999999999987     6677776  55654 99999999999999999999999999987    44


Q ss_pred             eeecc-ccceeEEEEEEc------CcEEEEecCCCeEEEEecCCCcceEEec---------------------cccC--C
Q 018591          253 ACETK-AHEMAVLCVCLV------GEFLCSGSADKSIGIWKREAFGKLCRVG---------------------AITG--H  302 (353)
Q Consensus       253 ~~~~~-~~~~~v~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~~~~~~---------------------~~~~--h  302 (353)
                      ...+. .|...+.++.+.      +.+|++|+.||.|++||+++++....+.                     .+.+  |
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS  328 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence            44443 667788888543      5699999999999999999876333222                     1122  7


Q ss_pred             CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ...|++++|+ +    +++|++|+.||.|++||+.+++......
T Consensus       329 ~~~v~~l~~~-~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          329 LNALSTISVS-N----DKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             GGGGCCEEEE-T----TEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             CCceEEEEEC-C----ceEEEecCCCCeEEEEECCCcccceEEe
Confidence            7789999999 6    7999999999999999999988776544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.9e-36  Score=251.12  Aligned_cols=254  Identities=18%  Similarity=0.218  Sum_probs=208.1

Q ss_pred             CCceeeeeeC-----ccCceEEEEEC------CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe---CCEEE
Q 018591            5 SHRSLAVLSG-----HVGSVSSLALC------GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV---GNKVF   70 (353)
Q Consensus         5 ~~~~~~~l~~-----h~~~v~~~~~~------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~   70 (353)
                      +++.+..+..     |...|++++|+      +++|++|+.||.|++||+.+++.+..+..|...|.+++|+   +++|+
T Consensus        53 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  132 (366)
T 3k26_A           53 SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL  132 (366)
T ss_dssp             GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEE
T ss_pred             CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEE
Confidence            4555556654     55789999995      4699999999999999999999999999999999999996   67999


Q ss_pred             EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591           71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK  148 (353)
Q Consensus        71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg  148 (353)
                      +++.||.|++||+++++     .+..+..                        +.+|...|.+++|+|  +++++++.||
T Consensus       133 s~~~dg~i~iwd~~~~~-----~~~~~~~------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg  183 (366)
T 3k26_A          133 SVSKDHALRLWNIQTDT-----LVAIFGG------------------------VEGHRDEVLSADYDLLGEKIMSCGMDH  183 (366)
T ss_dssp             EEETTSCEEEEETTTTE-----EEEEECS------------------------TTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeCCCeEEEEEeecCe-----EEEEecc------------------------cccccCceeEEEECCCCCEEEEecCCC
Confidence            99999999999998765     2211100                        026899999999998  7999999999


Q ss_pred             cEEEEEcCCceeeeeccc----------------------------cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCc
Q 018591          149 TLKVWRVADLKCLESIKA----------------------------HDDAVNGLVASKGIVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       149 ~v~iwd~~~~~~~~~~~~----------------------------~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      .|++||+++++....+..                            |...|.+++|.++.+++++.|+.|++||+++...
T Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTC
T ss_pred             CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccc
Confidence            999999998766555443                            8999999999988999999999999999987652


Q ss_pred             c---------cccceeeeeccCCceeeEEEEcCC--CCeEEeecCCCcEEEeeccccccceeeeeecccc--ceeEEEEE
Q 018591          201 H---------CHSLKGILEGHKDVSLNSVVVSDD--GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH--EMAVLCVC  267 (353)
Q Consensus       201 ~---------~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~  267 (353)
                      .         .......+..|...+ .+++|+|+  +++|++++.||.|++||+..+.........+..|  ...+.++.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  342 (366)
T 3k26_A          264 DIDKIKPSESNVTILGRFDYSQCDI-WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS  342 (366)
T ss_dssp             CGGGCCTTCCCEEEEEEEECSSCCS-SCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE
T ss_pred             cccccccCCcchheeccccccCCcE-EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEE
Confidence            1         112355666777665 99999999  9999999999999999999875544444556666  67888887


Q ss_pred             Ec--CcEEEEecCCCeEEEEecC
Q 018591          268 LV--GEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       268 ~~--~~~l~~~~~dg~i~iw~~~  288 (353)
                      ++  +++|++++.||.|++||+.
T Consensus       343 ~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          343 FSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eCCCCCeEEEEeCCCEEEEEEec
Confidence            74  8899999999999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.5e-35  Score=266.85  Aligned_cols=290  Identities=17%  Similarity=0.225  Sum_probs=236.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRI   78 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i   78 (353)
                      ..+++.+..+.+|.++|++++|+  +++|++|+.||.|++||+.+++.+..+..|...|.+++|+  +.+|++++.||.|
T Consensus        42 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  121 (814)
T 3mkq_A           42 YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV  121 (814)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEE
Confidence            45788899999999999999996  8899999999999999999999999999999999999998  7799999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEc
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~  155 (353)
                      ++||++++..    .                           ...+.+|...|.+++|+|   ..+++++.||.|++||+
T Consensus       122 ~vw~~~~~~~----~---------------------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~  170 (814)
T 3mkq_A          122 KLWNWENNWA----L---------------------------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL  170 (814)
T ss_dssp             EEEEGGGTSE----E---------------------------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             EEEECCCCce----E---------------------------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            9999987631    1                           222337999999999998   68999999999999999


Q ss_pred             CCceeeeeccccC-cceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          156 ADLKCLESIKAHD-DAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       156 ~~~~~~~~~~~~~-~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      .+++....+..+. ..+.+++|.+    ..+++++.||.|++||+++++     ....+.+|...+ .+++|+|++++++
T Consensus       171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~~~~~~~~v-~~~~~~~~~~~l~  244 (814)
T 3mkq_A          171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVATLEGHMSNV-SFAVFHPTLPIII  244 (814)
T ss_dssp             TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEEEEECCSSCE-EEEEECSSSSEEE
T ss_pred             CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEEEEcCCCCCE-EEEEEcCCCCEEE
Confidence            8888777776554 8899999943    389999999999999999887     677777887765 9999999999999


Q ss_pred             eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc--EEEEecCCCeEEEEecCCCcceEEe----------
Q 018591          231 GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE--FLCSGSADKSIGIWKREAFGKLCRV----------  296 (353)
Q Consensus       231 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~iw~~~~~~~~~~~----------  296 (353)
                      +++.||.|++||+.++    .....+..+...+.+++++  +.  +++++ .++.+.+|++........+          
T Consensus       245 ~~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  319 (814)
T 3mkq_A          245 SGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSG  319 (814)
T ss_dssp             EEETTSCEEEEETTTC----SEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEEC
T ss_pred             EEeCCCeEEEEECCCC----cEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEEC
Confidence            9999999999999887    4555666677778888775  44  35554 5666888887643211000          


Q ss_pred             ------------------------------ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          297 ------------------------------GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       297 ------------------------------~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                                                    ..+..+...+.+++|+|+    +++|++++ ||.+.+|++...
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~la~~~-~~~~~i~~~~~~  387 (814)
T 3mkq_A          320 GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN----GRFVTVVG-DGEYVIYTALAW  387 (814)
T ss_dssp             CTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTT----SSEEEEEE-TTEEEEEETTTT
T ss_pred             cccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCC----CCEEEEec-CCEEEEEECccc
Confidence                                          111334556889999998    88888887 888999987543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=235.33  Aligned_cols=247  Identities=21%  Similarity=0.276  Sum_probs=206.9

Q ss_pred             CceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           45 DLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        45 ~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      ..+....+.+|.+.|.+++|. +++|++++.||.|++||++++.     .                           ...
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-----~---------------------------~~~   54 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW-----L---------------------------GTV   54 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE-----E---------------------------EEE
T ss_pred             cHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE-----E---------------------------EEE
Confidence            347788899999999999987 8899999999999999997654     1                           222


Q ss_pred             eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc---eeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCC
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL---KCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~  198 (353)
                      +..|...|.+++|+|  .++++++.||.|++|++...   +.+..+..|...|.++.+.++.+++++.||.|++||  ..
T Consensus        55 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~  132 (313)
T 3odt_A           55 VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG  132 (313)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT
T ss_pred             eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC
Confidence            337899999999999  89999999999999998654   567778899999999999888999999999999999  33


Q ss_pred             CcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEEc--CcEEE
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLV--GEFLC  274 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~  274 (353)
                      +     ....+..|...+ .++++.| +++++++++.||.|++||...      ....+.. +...+.++.++  +. ++
T Consensus       133 ~-----~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~  199 (313)
T 3odt_A          133 S-----LVYNLQAHNASV-WDAKVVSFSENKFLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FI  199 (313)
T ss_dssp             E-----EEEEEECCSSCE-EEEEEEETTTTEEEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETTE-EE
T ss_pred             c-----EEEecccCCCce-eEEEEccCCCCEEEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCCe-EE
Confidence            3     566777777766 8999988 899999999999999999443      2233333 66677777664  55 99


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +++.||.|++||+++++   .+..+.+|...|++++|+|+    + .|++++.||.|++||+.+++......
T Consensus       200 ~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~----~-~l~~~~~dg~v~iwd~~~~~~~~~~~  263 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTGD---VLRTYEGHESFVYCIKLLPN----G-DIVSCGEDRTVRIWSKENGSLKQVIT  263 (313)
T ss_dssp             EEETTSEEEEEETTTCC---EEEEEECCSSCEEEEEECTT----S-CEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred             EccCCCeEEEEECCchh---hhhhhhcCCceEEEEEEecC----C-CEEEEecCCEEEEEECCCCceeEEEe
Confidence            99999999999999887   66777899999999999999    7 68999999999999999988766554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.9e-35  Score=239.37  Aligned_cols=257  Identities=21%  Similarity=0.304  Sum_probs=208.0

Q ss_pred             CCCceeeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccc
Q 018591           43 QPDLRMFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRH  119 (353)
Q Consensus        43 ~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (353)
                      .++.++..++.+|.+.|++++|+   +++|+||+.||+|++||+...+......                          
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~--------------------------   78 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIP--------------------------   78 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEE--------------------------
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccee--------------------------
Confidence            34456677899999999999997   5789999999999999998765322222                          


Q ss_pred             ceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeC
Q 018591          120 HKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGK  195 (353)
Q Consensus       120 ~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~  195 (353)
                       ...+.+|...|.++.|+|  .+|++++.|+.|++|+............+...+..+.+  .+..+++++.|+.+++||.
T Consensus        79 -~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           79 -QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             -EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             -eEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence             233448999999999999  89999999999999999998888888888888888888  3448999999999999998


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCC--CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--Cc
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDG--KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GE  271 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  271 (353)
                      ....    .......+|...+ ..++|++++  .++++++.|+.|++||++..    .....+.+|...|.+++++  ++
T Consensus       158 ~~~~----~~~~~~~~~~~~v-~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~  228 (340)
T 4aow_A          158 LGVC----KYTVQDESHSEWV-SCVRFSPNSSNPIIVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGS  228 (340)
T ss_dssp             TSCE----EEEECSSSCSSCE-EEEEECSCSSSCEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCCc----eEEEEeccccCcc-cceEEccCCCCcEEEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCC
Confidence            8665    1334445566655 899998864  57889999999999999988    5666777888889888774  88


Q ss_pred             EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          272 FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +|++|+.||.|++||+++.+   .+..+.. ...|.++.|+|+    +. +++++.|+.|++||++.+..+..
T Consensus       229 ~l~s~s~Dg~i~iwd~~~~~---~~~~~~~-~~~v~~~~~~~~----~~-~~~~~~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          229 LCASGGKDGQAMLWDLNEGK---HLYTLDG-GDIINALCFSPN----RY-WLCAATGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             EEEEEETTCEEEEEETTTTE---EEEEEEC-SSCEEEEEECSS----SS-EEEEEETTEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCeEEEEEeccCc---eeeeecC-CceEEeeecCCC----Cc-eeeccCCCEEEEEECCCCeEEEe
Confidence            99999999999999999876   4444554 468999999997    55 55666799999999987765443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.1e-35  Score=262.56  Aligned_cols=254  Identities=22%  Similarity=0.316  Sum_probs=206.3

Q ss_pred             eeEEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           48 MFTKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      ....+.+|...|++++++   +++|++|+.||+|++|++.........                           ..+.+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~---------------------------~~~~~  426 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV---------------------------AQRRL  426 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE---------------------------EEEEE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc---------------------------cccee
Confidence            445688999999999997   468999999999999999765421111                           12334


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCc
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      .+|...|.+++|++  ++|++|+.||.|++||+.+++.+..+.+|...|.+++|++  ..+++++.|++|++||......
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~  506 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK  506 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence            58999999999999  8999999999999999999999999999999999999943  3899999999999999865431


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCC--CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEe
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDG--KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSG  276 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  276 (353)
                        ........+|...+ .+++|+|++  ..+++++.|+.|++||++..    .....+.+|...+.+++++  +++|++|
T Consensus       507 --~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~sg  579 (694)
T 3dm0_A          507 --YTISEGGEGHRDWV-SCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDGSLCASG  579 (694)
T ss_dssp             --EEECSSTTSCSSCE-EEEEECSCSSSCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             --eeeccCCCCCCCcE-EEEEEeCCCCcceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence              01111223566655 999999986  57999999999999999887    5566778899888888775  8899999


Q ss_pred             cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +.||.|++||+.+++   .+..+. +...|.+++|+|+    +.+|++++ |+.|++||+++++.+..
T Consensus       580 ~~Dg~i~iwd~~~~~---~~~~~~-~~~~v~~~~~sp~----~~~l~~~~-~~~i~iwd~~~~~~~~~  638 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGK---KLYSLE-ANSVIHALCFSPN----RYWLCAAT-EHGIKIWDLESKSIVED  638 (694)
T ss_dssp             ETTSBCEEEETTTTE---EEECCB-CSSCEEEEEECSS----SSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             eCCCeEEEEECCCCc---eEEEec-CCCcEEEEEEcCC----CcEEEEEc-CCCEEEEECCCCCChhh
Confidence            999999999999877   444454 4567999999999    88887775 55699999998876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.3e-35  Score=246.51  Aligned_cols=260  Identities=17%  Similarity=0.187  Sum_probs=210.1

Q ss_pred             eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           48 MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        48 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      ....+.+|...|.+++|++++|++++.||.|++|++++.....     .                     ......+.+|
T Consensus         8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~-----~---------------------~~~~~~~~~h   61 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNEN-----P---------------------KDKSYSHFVH   61 (397)
T ss_dssp             EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCC-----G---------------------GGGEEEEECC
T ss_pred             hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccccc-----C---------------------CCcceEEecC
Confidence            4556789999999999999999999999999999998765100     0                     0112333479


Q ss_pred             CCceEEEEEeC---------CeEEEecCCCcEEEEEcCCcee-----eeecccc-----CcceEEEEEe----CC--e-E
Q 018591          128 ADSISCLTVYN---------GLIYSGSWDKTLKVWRVADLKC-----LESIKAH-----DDAVNGLVAS----KG--I-V  181 (353)
Q Consensus       128 ~~~i~~~~~~~---------~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~--~-l  181 (353)
                      ...|.+++|++         .+|++++.||.|++||+.+++.     ...+..|     ...|.+++|.    ++  . +
T Consensus        62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred             CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence            99999999985         4799999999999999998876     7888888     5899999997    44  7 9


Q ss_pred             EEEcCCCcEEEEeCCC------CCcccccceeeee-------ccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc
Q 018591          182 YSASADGKIKAWGKEL------GKSHCHSLKGILE-------GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV  248 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  248 (353)
                      ++++.||.|++||++.      .+.........+.       .|... +.+++|+|++ ++++++.||.|++||+++.  
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--  217 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF-ATSVDISERG-LIATGFNNGTVQISELSTL--  217 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC-CCEEEECTTS-EEEEECTTSEEEEEETTTT--
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC-ceEEEECCCc-eEEEEeCCCcEEEEECCCC--
Confidence            9999999999999988      4421111111442       34554 4999999999 9999999999999999987  


Q ss_pred             ceeeeeeccc---c---ceeEEEEEE--cCcEEEEecCC---CeEEEEecCCCcceEEeccccC-------------CCc
Q 018591          249 RWKLACETKA---H---EMAVLCVCL--VGEFLCSGSAD---KSIGIWKREAFGKLCRVGAITG-------------HEG  304 (353)
Q Consensus       249 ~~~~~~~~~~---~---~~~v~~~~~--~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~-------------h~~  304 (353)
                        .....+..   |   ...+.++.+  ++++|++++.|   |.|++||+.+++   .+..+.+             |..
T Consensus       218 --~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          218 --RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE---RIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             --EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC---EEEEECBC--------CCBSBSS
T ss_pred             --ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc---ccceeccCcccccccccccccCC
Confidence              45555555   7   778888777  48899999999   999999999877   5566677             999


Q ss_pred             CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .|.+++|+|+    +++|++++.||.|++||+.+++.+....
T Consensus       293 ~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          293 WVMSLSFNDS----GETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             CEEEEEECSS----SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEECCC----CCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999999999    9999999999999999999887776654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=254.80  Aligned_cols=228  Identities=14%  Similarity=0.055  Sum_probs=176.0

Q ss_pred             EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCC--------
Q 018591           68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNG--------  139 (353)
Q Consensus        68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------  139 (353)
                      .+++++.|++|++|++++++.... .                           ...+.+|.+.|.+++|+|.        
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~-~---------------------------~~~l~~~~~~V~~v~wsp~~~~~~~~~  226 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCV-K---------------------------VQTIVHSFGEVWDLKWHEGCHAPHLVG  226 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEE-E---------------------------EEEEEECCCSEEEEEECSSCCCSSSSC
T ss_pred             hhccCCCCceEEEEEccCCCCCce-E---------------------------EEEEEecCCcEEEEEECCCCCCCCCCc
Confidence            456677899999999987652110 0                           1112367889999999973        


Q ss_pred             eEEEecCCCcEEEEEcCCcee-----------eeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          140 LIYSGSWDKTLKVWRVADLKC-----------LESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       140 ~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      +|++++.||+|++||+.+++.           ...+.+|...|++++| +++.|++|+.||+|++||++++.    .+..
T Consensus       227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~----~~~~  302 (524)
T 2j04_B          227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE----VPSF  302 (524)
T ss_dssp             EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCS----SCSE
T ss_pred             eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCC----CceE
Confidence            899999999999999976532           2356789999999999 55699999999999999998764    1445


Q ss_pred             eeeccCCceeeEE--EEcCCC-CeEEeecCCCcEEEeeccccccceeeeeeccccce--eE--EEEEEcCcEEEEecCCC
Q 018591          208 ILEGHKDVSLNSV--VVSDDG-KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM--AV--LCVCLVGEFLCSGSADK  280 (353)
Q Consensus       208 ~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~~~~~dg  280 (353)
                      .+.+|...+ .++  +|+|++ .+|++++.|++|++||+++.....    .+.+|..  .+  .+++|+++.+++++.|+
T Consensus       303 ~~~~H~~~V-~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~----~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~  377 (524)
T 2j04_B          303 YDQVHDSYI-LSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK----TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS  377 (524)
T ss_dssp             EEECSSSCE-EEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC----EEEEECSCCSCCCEEEETTTTEEEEECSSS
T ss_pred             EeecccccE-EEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc----ccccccccCcccceEeCCCcCeEEEeCCCC
Confidence            677888776 888  578887 899999999999999998874332    2223321  23  45666688999999999


Q ss_pred             eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          281 SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       281 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +|++||++++.   .+..+.+|.+.|++++|+|+    +++|++|+.||+|++|++...
T Consensus       378 tv~lwd~~~~~---~~~~l~gH~~~V~sva~Sp~----g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          378 SLRAVPSRAAF---AVHPLVSRETTITAIGVSRL----HPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             EEEEEETTCTT---CCEEEEECSSCEEEEECCSS----CCBCEEEETTTEEECCBSCSS
T ss_pred             cEEEEECcccc---cceeeecCCCceEEEEeCCC----CCeEEEEECCCEEEEEechHh
Confidence            99999999876   45567789999999999999    999999999999999998653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-34  Score=241.94  Aligned_cols=280  Identities=14%  Similarity=0.123  Sum_probs=214.2

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCCce---eeEEeccC------------------------------------
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLR---MFTKFGHG------------------------------------   55 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~---~~~~~~~~------------------------------------   55 (353)
                      .++.+++|+  |++|+++ .++.|++||+.+++   .+..+..+                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999996  7766655 57899999999998   66555433                                    


Q ss_pred             ------------------ceeeEEEEEe--CCEE-EEecCCCcEEEEEcc--cCccceeEEeeccccccceeeeecccce
Q 018591           56 ------------------DGSVKAVVTV--GNKV-FTAHQDSRIRVWKVS--RSSENVFRLVDTLPTTKDYLGKFMKQSN  112 (353)
Q Consensus        56 ------------------~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (353)
                                        .+.|.+++|+  +++| ++++.||.|++||+.  ++..  ...+..                
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~--~~~~~~----------------  145 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--LKLRKR----------------  145 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC--EEEEEE----------------
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce--eeeeec----------------
Confidence                              2369999998  6775 899999999999998  5431  111110                


Q ss_pred             eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee----eccccCcceEEEEE-eC---C-eE
Q 018591          113 YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE----SIKAHDDAVNGLVA-SK---G-IV  181 (353)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i~~-~~---~-~l  181 (353)
                                  ..|...|.+++|+|  .+|++|+.+|.|++|++.+++...    .+.+|...|++++| ++   + ++
T Consensus       146 ------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  213 (450)
T 2vdu_B          146 ------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFI  213 (450)
T ss_dssp             ------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEE
T ss_pred             ------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEE
Confidence                        15778999999999  799999999999999998877554    77889999999999 33   3 89


Q ss_pred             EEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec----
Q 018591          182 YSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET----  256 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----  256 (353)
                      ++++.|+.|++||+++++     .... +.+|...+ .+++|+ ++++|++++.|+.|++||+.++..........    
T Consensus       214 ~s~~~d~~i~vwd~~~~~-----~~~~~~~~h~~~v-~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~  286 (450)
T 2vdu_B          214 ITSDRDEHIKISHYPQCF-----IVDKWLFGHKHFV-SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKP  286 (450)
T ss_dssp             EEEETTSCEEEEEESCTT-----CEEEECCCCSSCE-EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred             EEEcCCCcEEEEECCCCc-----eeeeeecCCCCce-EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhh
Confidence            999999999999999876     4444 55777665 999999 99999999999999999999874332221100    


Q ss_pred             -----------------cccceeEEEEEE--cCcEEEEec-CCCeEEEEec--CCCcceEEeccccCCCcCeEEEEeecC
Q 018591          257 -----------------KAHEMAVLCVCL--VGEFLCSGS-ADKSIGIWKR--EAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       257 -----------------~~~~~~v~~~~~--~~~~l~~~~-~dg~i~iw~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                                       ......+.++.+  ++++|++++ .++.|++|++  ..+..+..+..+..| +.|.+++|+|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence                             012234555555  588999888 8999999999  555445567777777 88999999997


Q ss_pred             CCCCCeEEEEccC------CCeEEEEEcCCC
Q 018591          315 AVGGGFLLYSGSL------DKSLRVWWVSKQ  339 (353)
Q Consensus       315 ~~~~~~~l~s~~~------dg~i~iw~~~~~  339 (353)
                          +.++++++.      +..|.+|.+...
T Consensus       366 ----~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          366 ----EFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             ----EEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             ----cEEEEEecccCCCCCCcceEEEEEEcC
Confidence                666666554      556899987643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2e-34  Score=227.10  Aligned_cols=291  Identities=15%  Similarity=0.083  Sum_probs=198.1

Q ss_pred             CCceeeeeeCccC----ceEEEEEC----Cc-EEEEEeCCCcEEEEeCCCc---eeeEEeccCceeeEEEEEeC---CEE
Q 018591            5 SHRSLAVLSGHVG----SVSSLALC----GE-FILSASQGKDIIVWQQPDL---RMFTKFGHGDGSVKAVVTVG---NKV   69 (353)
Q Consensus         5 ~~~~~~~l~~h~~----~v~~~~~~----~~-~l~s~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~---~~l   69 (353)
                      ..+++..|+...+    .+.++-|.    .+ -+++++. ..|++|+..++   +.+.++..|+.+|..+.+.+   +.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  102 (356)
T 2w18_A           24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV  102 (356)
T ss_dssp             CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred             eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence            3456677776544    34555553    22 5666665 69999999998   89999999999999999873   333


Q ss_pred             EEecCCCcE-EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec---
Q 018591           70 FTAHQDSRI-RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS---  145 (353)
Q Consensus        70 ~s~~~dg~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---  145 (353)
                      ..+-.+=.+ .++.+.-...           ...+       .        ....-.+|...|..+  ....++..+   
T Consensus       103 ~~~~~~~~~~~v~sla~spd-----------~~~~-------~--------~~l~s~g~~~~v~~l--~~g~lv~ss~~g  154 (356)
T 2w18_A          103 CVALGNLEIREIRALFCSSD-----------DESE-------K--------QVLLKSGNIKAVLGL--TKRRLVSSSGTL  154 (356)
T ss_dssp             EEEECSSSEEEEEEECC-----------------C-------C--------EEEEEEEEEEEEEEE--TTTEEEEEESSS
T ss_pred             eeeeccccccceEEEEECCC-----------cccc-------c--------cEEEeCCCeEEEEec--CCCcEEEecccC
Confidence            222211111 1121111100           0000       0        000001344444443  335555553   


Q ss_pred             CCCcEEEEEc-CCceeeeeccccCcceEEEEEeC-----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC--cee
Q 018591          146 WDKTLKVWRV-ADLKCLESIKAHDDAVNGLVASK-----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD--VSL  217 (353)
Q Consensus       146 ~dg~v~iwd~-~~~~~~~~~~~~~~~v~~i~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v  217 (353)
                      .|+.|++|++ .+++.+..+..|...+..++|++     ..|++++.|++|++||+++++     +...+.+|..  ..+
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~~~v~~v  229 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDDSYQASV  229 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-----EEEEEECCC---CCC
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-----EEEEEcCCCcceeee
Confidence            5999999999 55888888888998888888833     499999999999999999998     7777776543  234


Q ss_pred             eEEEEcCCCCeE------------EeecCCCcEEEeeccccccceeeeee-ccccceeEEEEEEcCcEEEEecCCCeEEE
Q 018591          218 NSVVVSDDGKWV------------YGGGSDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCLVGEFLCSGSADKSIGI  284 (353)
Q Consensus       218 ~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  284 (353)
                      .+++|+|++.++            ++|+.|++|++||..++......... ..+|.....+.++++.++++|+.|++|+|
T Consensus       230 ~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkI  309 (356)
T 2w18_A          230 CHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAI  309 (356)
T ss_dssp             EEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEE
T ss_pred             EEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEE
Confidence            678999999876            56788999999999987432221111 23566566677777899999999999999


Q ss_pred             EecCCCcceEEeccccCCCcCeE-EEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          285 WKREAFGKLCRVGAITGHEGPVK-CLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       285 w~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      ||+.+++   .+.++.+|...+. .++|+|+    |++|++|+.|++|+|||+
T Consensus       310 WDl~tGk---~l~tL~gH~~~vvs~vafSPD----G~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          310 WDLLLGQ---CTALLPPVSDQHWSFVKWSGT----DSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTTCS---EEEEECCC--CCCCEEEECSS----SSEEEEECTTSCEEEEEE
T ss_pred             EECCCCc---EEEEecCCCCCeEEEEEECCC----CCEEEEEECCCcEEEecC
Confidence            9999988   7778888987655 6899999    999999999999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-35  Score=264.89  Aligned_cols=250  Identities=18%  Similarity=0.250  Sum_probs=200.2

Q ss_pred             eeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe----CCEEEEecCCCcEEE
Q 018591            9 LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRV   80 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~~   80 (353)
                      +..+.+|.++|++++|+  +++|++|+.||.|++||+.  +++.+..+.+|.+.|.+++|+    +++|++++.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            46789999999999996  8899999999999999987  667888899999999999996    679999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcC
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~  156 (353)
                      ||+.++...   .                           ...+.+|...|.+++|+|    ..+++|+.||.|++||++
T Consensus        82 wd~~~~~~~---~---------------------------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           82 WKEENGRWS---Q---------------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             EEEETTEEE---E---------------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             EECCCCccc---c---------------------------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            999876411   1                           122237999999999997    489999999999999998


Q ss_pred             Cce--eeeeccccCcceEEEEEeC---------------CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          157 DLK--CLESIKAHDDAVNGLVASK---------------GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       157 ~~~--~~~~~~~~~~~v~~i~~~~---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                      ++.  ....+.+|...|.+++|.+               ..+++++.||.|++||++++.. ...+...+.+|...+ .+
T Consensus       132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~h~~~V-~~  209 (753)
T 3jro_A          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLESTLEGHSDWV-RD  209 (753)
T ss_dssp             SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-EEEEEEEECCCSSCE-EE
T ss_pred             cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-cceeeeeecCCCCcE-EE
Confidence            763  3455678999999999943               4899999999999999987741 123455667787766 99


Q ss_pred             EEEcCC---CCeEEeecCCCcEEEeeccccccce-eeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCC
Q 018591          220 VVVSDD---GKWVYGGGSDGFVMGWEGNVEIVRW-KLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       220 ~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      ++|+|+   ++++++++.||.|++||+..+.... ........|...+.++.+  +++++++|+.||.|++|++...
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            999999   8999999999999999998863221 123333456667766655  5889999999999999999853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-34  Score=239.31  Aligned_cols=249  Identities=13%  Similarity=0.119  Sum_probs=205.4

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEE--eccCceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      ++..+.+|...|++++|+  +++|++++.||.|++||+.+++....  +..|...|.+++|+  +++|++++.||.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            788999999999999996  88999999999999999988875544  36788999999998  7899999999999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc----
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV----  155 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~----  155 (353)
                      |++.......  ..                          ....+|...|.+++|+|  .++++++.||.|++||+    
T Consensus       124 d~~~~~~~~~--~~--------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  175 (372)
T 1k8k_C          124 YFEQENDWWV--CK--------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  175 (372)
T ss_dssp             EEETTTTEEE--EE--------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             EecCCCccee--ee--------------------------eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc
Confidence            9987652111  11                          11126889999999998  78999999999999995    


Q ss_pred             --------------CCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          156 --------------ADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       156 --------------~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                                    ..++++..+..|...|.+++|++  ..+++++.|+.|++||+++++     ....+..|...+ .+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~v-~~  249 (372)
T 1k8k_C          176 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-----AVATLASETLPL-LA  249 (372)
T ss_dssp             TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-----EEEEEECSSCCE-EE
T ss_pred             ccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----eeEEEccCCCCe-EE
Confidence                          36788888989999999999943  399999999999999999887     677777777665 99


Q ss_pred             EEEcCCCCeEEeecCCCcEEEeeccc--cccc----------------------------eeee------eec-ccccee
Q 018591          220 VVVSDDGKWVYGGGSDGFVMGWEGNV--EIVR----------------------------WKLA------CET-KAHEMA  262 (353)
Q Consensus       220 ~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~----------------------------~~~~------~~~-~~~~~~  262 (353)
                      ++|+|++.+++++ .|+.|++|++..  +...                            ....      ..+ .+|...
T Consensus       250 ~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  328 (372)
T 1k8k_C          250 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS  328 (372)
T ss_dssp             EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred             EEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence            9999999988888 899999999987  3100                            0000      222 478889


Q ss_pred             EEEEEE---cC---cEEEEecCCCeEEEEecCCCc
Q 018591          263 VLCVCL---VG---EFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       263 v~~~~~---~~---~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      |.++++   ++   .+|++|+.||.|++||+.+++
T Consensus       329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            999874   35   899999999999999998755

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-34  Score=241.77  Aligned_cols=259  Identities=12%  Similarity=0.098  Sum_probs=203.1

Q ss_pred             EEeCCCceeeEEeccCceeeEEEEEe--C-CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEee
Q 018591           40 VWQQPDLRMFTKFGHGDGSVKAVVTV--G-NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQT  116 (353)
Q Consensus        40 vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (353)
                      +|++...+....+.+|...|.+++|+  + ++|++++.||.|++||+.++.....     +                   
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~-------------------  112 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----I-------------------  112 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----E-------------------
T ss_pred             cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----e-------------------
Confidence            34445667788899999999999998  4 7999999999999999987652110     0                   


Q ss_pred             cccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccc---cCcceEEEEEeC--CeEEEEcCCC
Q 018591          117 RRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKA---HDDAVNGLVASK--GIVYSASADG  188 (353)
Q Consensus       117 ~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~i~~~~--~~l~~~~~dg  188 (353)
                            ...+|...|.+++|+|   .+|++++.|+.|++||++. ..+..+..   |...|.+++|++  ..+++++.|+
T Consensus       113 ------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  185 (383)
T 3ei3_B          113 ------QGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG  185 (383)
T ss_dssp             ------CCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred             ------ecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence                  0116999999999998   6999999999999999985 44555543   448899999943  4999999999


Q ss_pred             cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591          189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC  267 (353)
Q Consensus       189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  267 (353)
                      .|++||++ ++     ....+..|...+ .+++|+|+++ ++++++.|+.|++||++...........+ .|...+.++.
T Consensus       186 ~i~i~d~~-~~-----~~~~~~~h~~~v-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~  257 (383)
T 3ei3_B          186 RLLLLGLD-GH-----EIFKEKLHKAKV-THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAY  257 (383)
T ss_dssp             EEEEEETT-SC-----EEEEEECSSSCE-EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEE
T ss_pred             CEEEEECC-CC-----EEEEeccCCCcE-EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEE
Confidence            99999995 33     567777888776 9999999998 89999999999999999843322343333 5777888877


Q ss_pred             E---cCcEEEEecCCCeEEEEecCCCcceEEeccccCC-------C----------cCeEEEEeecCCCCCCeEEEEccC
Q 018591          268 L---VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGH-------E----------GPVKCLQASPNAVGGGFLLYSGSL  327 (353)
Q Consensus       268 ~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~----------~~v~~~~~~~~~~~~~~~l~s~~~  327 (353)
                      +   ++++|++++.|+.|++||+++++..   ..+.+|       .          +.+..++|+|+    +++  +++.
T Consensus       258 ~s~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d----g~~--s~s~  328 (383)
T 3ei3_B          258 FNPTDSTKLLTTDQRNEIRVYSSYDWSKP---DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD----DQL--LLND  328 (383)
T ss_dssp             ECTTTSCEEEEEESSSEEEEEETTBTTSC---SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC----TTT--CTTC
T ss_pred             EcCCCCCEEEEEcCCCcEEEEECCCCccc---cccccccccccccccceEEeccCCCCceEEEecCC----ccc--ccCC
Confidence            6   4689999999999999999987643   223322       2          34455777777    666  8889


Q ss_pred             CCeEEEEEcCCCCCccccc
Q 018591          328 DKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       328 dg~i~iw~~~~~~~~~~~~  346 (353)
                      ||.|++||+.+++.+....
T Consensus       329 d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          329 KRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             CCCEEEEETTTCCEEEEEC
T ss_pred             CCeEEEEecCCCceeeeec
Confidence            9999999999998876655

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.2e-35  Score=244.13  Aligned_cols=247  Identities=12%  Similarity=0.017  Sum_probs=190.8

Q ss_pred             eccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC
Q 018591           52 FGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD  129 (353)
Q Consensus        52 ~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (353)
                      +..+.++|.+++|+  +++|++++.||.|++||+.++.   .....                           .+.+|..
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---~~~~~---------------------------~~~~h~~   56 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---WKHAR---------------------------TFSDHDK   56 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---EEECC---------------------------CBCCCSS
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---eEEEE---------------------------EEecCCc
Confidence            44466789999998  8899999999999999998752   01222                           2237999


Q ss_pred             ceEEEEEeC--CeEEEecCCCcEEEEEcCCce---eeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccc
Q 018591          130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      .|.+++|+|  ++|++++.|+.|++||+.+++   +...+..|...|.+++|++  ..+++++.|+.|++||++.++.  
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--  134 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND--  134 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc--
Confidence            999999999  799999999999999999877   6777788999999999943  4899999999999999987751  


Q ss_pred             ccceeeeec-cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc--------------cceeeeeeccccceeEEEEE
Q 018591          203 HSLKGILEG-HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI--------------VRWKLACETKAHEMAVLCVC  267 (353)
Q Consensus       203 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~~~~v~~~~  267 (353)
                      ......+.. |...+ .+++|+|++++|++++.|+.|++||+....              ........+ .|...+.++.
T Consensus       135 ~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          135 WWVSKHLKRPLRSTI-LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             CCCCEEECSSCCSCE-EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             ceeeeEeecccCCCe-EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence            112455565 66655 999999999999999999999999986321              112344445 7888888887


Q ss_pred             E--cCcEEEEecCCCeEEEEecCCCcce-EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          268 L--VGEFLCSGSADKSIGIWKREAFGKL-CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       268 ~--~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +  ++++|++++.||.|++||+.+++.+ ..+..+.+|..+|.+++|+|+    +++|++++.|+.+ +|+..
T Consensus       213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE----SAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET----TEEEEEESSSSEE-EECCC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC----CCEEEEEcCCcEE-EEEeC
Confidence            7  4889999999999999999988742 226778899999999999999    9999999877766 66655

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=226.84  Aligned_cols=246  Identities=17%  Similarity=0.240  Sum_probs=203.6

Q ss_pred             CCCCceeeeee--CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcE
Q 018591            3 CKSHRSLAVLS--GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRI   78 (353)
Q Consensus         3 ~~~~~~~~~l~--~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i   78 (353)
                      ..++++++.++  +|...|++++|+  +++|++|+.||+|++||+++++.+..+.+|...+.++.+.+..+++++.++.+
T Consensus        52 ~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~  131 (318)
T 4ggc_A           52 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI  131 (318)
T ss_dssp             TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             CCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCce
Confidence            45778777765  678899999996  89999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~  156 (353)
                      ++|+.......                               ...+.+|...+.++.+.+  .++++++.||.|++||++
T Consensus       132 ~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  180 (318)
T 4ggc_A          132 HHHDVRVAEHH-------------------------------VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA  180 (318)
T ss_dssp             EEEETTSSSCE-------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred             EeeecCCCcee-------------------------------EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence            99998776421                               222337999999999998  899999999999999998


Q ss_pred             Ccee----eeeccccCcceEEEEEeCC-----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC
Q 018591          157 DLKC----LESIKAHDDAVNGLVASKG-----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       157 ~~~~----~~~~~~~~~~v~~i~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      +++.    ......+...|.++.+.+.     .+++++.++.|++||.+...     .... ..+... +..+.|+|++.
T Consensus       181 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-----~~~~-~~~~~~-v~~~~~~~~~~  253 (318)
T 4ggc_A          181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLSA-VDAHSQ-VCSILWSPHYK  253 (318)
T ss_dssp             CBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-----EEEE-EECSSC-EEEEEEETTTT
T ss_pred             CCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-----cccc-ccceee-eeeeeeccccc
Confidence            7653    3344567888999998332     34577889999999998876     3333 333333 48999999998


Q ss_pred             eEEee--cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591          228 WVYGG--GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       228 ~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .++++  +.|+.|++||++++    +....+.+|...|.+++++  +++|++|+.||+|++||+.+.
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~~----~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             ceEEEEEcCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            87764  47999999999988    5667788999999998875  889999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-33  Score=229.66  Aligned_cols=256  Identities=17%  Similarity=0.198  Sum_probs=214.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---   75 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---   75 (353)
                      ..+++.+..+.+|.+.|++++|+  +++|++++.||.|++||+.+++.+..+. +...|.++.|+  +.++++++.+   
T Consensus        61 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  139 (369)
T 3zwl_B           61 SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMK  139 (369)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTT
T ss_pred             CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccC
Confidence            46788899999999999999996  8899999999999999999999998888 78899999998  7899999998   


Q ss_pred             --CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC--ceEEEEEeC--CeEEEecCCCc
Q 018591           76 --SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD--SISCLTVYN--GLIYSGSWDKT  149 (353)
Q Consensus        76 --g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~l~~~~~dg~  149 (353)
                        |.|++||+............                     .......+..|..  .+.+++|++  +.+++++.||.
T Consensus       140 ~~g~i~~~d~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  198 (369)
T 3zwl_B          140 NPGSINIYEIERDSATHELTKV---------------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK  198 (369)
T ss_dssp             BCCEEEEEEEEECTTTCCEEEE---------------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSE
T ss_pred             CCCEEEEEEecCCccceeeccc---------------------ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCE
Confidence              99999999876532111110                     1112233335666  999999999  89999999999


Q ss_pred             EEEEEcCC-ceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC
Q 018591          150 LKVWRVAD-LKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG  226 (353)
Q Consensus       150 v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (353)
                      |++||+++ .+.+..+..|...|.+++|++  ..+++++.|+.|++||+++.+     ....+. +... +..++|+|++
T Consensus       199 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~-~~~~-~~~~~~~~~~  271 (369)
T 3zwl_B          199 ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ-----VLKKYE-TDCP-LNTAVITPLK  271 (369)
T ss_dssp             EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEE-CSSC-EEEEEECSSS
T ss_pred             EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc-----eeeeec-CCCC-ceeEEecCCC
Confidence            99999998 788899999999999999943  389999999999999999887     555555 3333 4999999999


Q ss_pred             CeEEeecCCC--------------cEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCC
Q 018591          227 KWVYGGGSDG--------------FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       227 ~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      +++++++.++              .+++||...+    .....+.+|...+.++.++  +++|++++.||.|++|+++.+
T Consensus       272 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          272 EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             SEEEEEECCC-------------CEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ceEEEeecCCCceEEEEecCCCcceeEEEecCCC----cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            9999999988              8999999887    5566677888889888874  889999999999999999865


Q ss_pred             c
Q 018591          291 G  291 (353)
Q Consensus       291 ~  291 (353)
                      .
T Consensus       348 ~  348 (369)
T 3zwl_B          348 Y  348 (369)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=259.18  Aligned_cols=254  Identities=18%  Similarity=0.216  Sum_probs=207.3

Q ss_pred             eEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           49 FTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        49 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      +..+.+|.+.|.+++|+  +++|++|+.||.|++||+..+...   .                           ...+.+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~---~---------------------------~~~l~~   51 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK---L---------------------------IDTLTG   51 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE---E---------------------------EEEECC
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc---c---------------------------ceeccC
Confidence            34678999999999998  789999999999999999754311   1                           222337


Q ss_pred             cCCceEEEEEeC----CeEEEecCCCcEEEEEcCCce--eeeeccccCcceEEEEEe----CCeEEEEcCCCcEEEEeCC
Q 018591          127 HADSISCLTVYN----GLIYSGSWDKTLKVWRVADLK--CLESIKAHDDAVNGLVAS----KGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       127 ~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~----~~~l~~~~~dg~i~iwd~~  196 (353)
                      |...|.+++|++    +.+++|+.||.|++||+.+++  .+..+..|...|.+++|+    +..+++++.||.|++||++
T Consensus        52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            999999999975    689999999999999999886  777888899999999993    4599999999999999998


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcC-------------CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSD-------------DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV  263 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  263 (353)
                      ....   .....+..|...+ .+++|+|             ++.++++|+.||.|++||++.+.........+.+|...+
T Consensus       132 ~~~~---~~~~~~~~~~~~v-~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V  207 (753)
T 3jro_A          132 ENGT---TSPIIIDAHAIGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (753)
T ss_dssp             SSSC---CCCEEEECCSSCE-EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             cCCC---cceeEeecCCCce-EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence            7741   1234456666665 9999999             589999999999999999998766666777788899999


Q ss_pred             EEEEEc-----CcEEEEecCCCeEEEEecCCCcce--EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          264 LCVCLV-----GEFLCSGSADKSIGIWKREAFGKL--CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       264 ~~~~~~-----~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      .++.++     +.+|++|+.||.|++||+.+++..  ..+....+|...|++++|+|+    +++|++++.||.|++|++
T Consensus       208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd----g~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT----TCCEEEECSSSCEECCBC
T ss_pred             EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC----CCEEEEEcCCCEEEEEec
Confidence            888775     679999999999999999886421  123344568899999999999    999999999999999999


Q ss_pred             CCCC
Q 018591          337 SKQS  340 (353)
Q Consensus       337 ~~~~  340 (353)
                      ..+.
T Consensus       284 ~~~~  287 (753)
T 3jro_A          284 NLEG  287 (753)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            8654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-34  Score=235.43  Aligned_cols=269  Identities=12%  Similarity=0.019  Sum_probs=198.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeecccccccee
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYL  104 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~  104 (353)
                      ++.+|++|+.||.|++||+.+++.+..+.  ...|.++.+... +++++.|++|++|+.+...     .+..+....   
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~-----~~~~~~~~~---  115 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQI-----TILDSKTNK---  115 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEE-----EEEETTTCC---
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCce-----EEeecCCcc---
Confidence            37899999999999999999999888876  467777777766 9999999999999986421     000000000   


Q ss_pred             eeecccceeEeecccceeeeeecCCceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeeecc-ccCcceEEEEEeCC
Q 018591          105 GKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVASKG  179 (353)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~  179 (353)
                                    .......+|...|.+++|+|    +++++++.||.|++||++++++..... .+...+.+++|+++
T Consensus       116 --------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd  181 (343)
T 3lrv_A          116 --------------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD  181 (343)
T ss_dssp             --------------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT
T ss_pred             --------------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC
Confidence                          00111126778999999987    689999999999999999998876663 34568999999443


Q ss_pred             --eEEEEcCCCcEEEEeCCCCCcccccce-eeeec-cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeee
Q 018591          180 --IVYSASADGKIKAWGKELGKSHCHSLK-GILEG-HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACE  255 (353)
Q Consensus       180 --~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  255 (353)
                        ++++|+.||.|++||+++++     .. ..+.. |...+ .+++|+|++.+|++++ ++.|++||++........ ..
T Consensus       182 g~~lasg~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~v-~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~-~~  253 (343)
T 3lrv_A          182 SLLLALYSPDGILDVYNLSSPD-----QASSRFPVDEEAKI-KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY-PT  253 (343)
T ss_dssp             SCEEEEECTTSCEEEEESSCTT-----SCCEECCCCTTSCE-EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS-CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCC-----CCccEEeccCCCCE-EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee-cc
Confidence              88899999999999999887     33 55666 77665 9999999999999999 559999999987432211 11


Q ss_pred             cccccee----EEEEEEcCcEEEEecC-CCeEEEEecCCCcceEEeccccCCCcCeEEEEeec---CCCCCCeEEEEccC
Q 018591          256 TKAHEMA----VLCVCLVGEFLCSGSA-DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP---NAVGGGFLLYSGSL  327 (353)
Q Consensus       256 ~~~~~~~----v~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~l~s~~~  327 (353)
                      +..+...    ..++++++++|++++. |+.+++|++.........       .++..+.|.|   +    ...+++++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~l~~~~~  322 (343)
T 3lrv_A          254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------DEESALCLQSDTAD----FTDMDVVCG  322 (343)
T ss_dssp             CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------EEEEECCC----CC----CCEEEEEEE
T ss_pred             cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------cCceeEecCccccc----cceeEEEec
Confidence            1112222    3555667999999988 999999999765432221       5677888888   6    778888888


Q ss_pred             CCeEEEEEcC
Q 018591          328 DKSLRVWWVS  337 (353)
Q Consensus       328 dg~i~iw~~~  337 (353)
                      ||.+.++-..
T Consensus       323 d~~~~~~~~~  332 (343)
T 3lrv_A          323 DGGIAAILKT  332 (343)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCceEEEEec
Confidence            9988887543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.9e-34  Score=240.78  Aligned_cols=232  Identities=13%  Similarity=0.058  Sum_probs=168.5

Q ss_pred             CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-------
Q 018591           66 GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-------  138 (353)
Q Consensus        66 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------  138 (353)
                      +.+|++++.|++|++||.+.+.......+..+.                           +|.+.|++++|+|       
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~---------------------------gH~~~v~~v~~~p~~~~~~~  153 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKS---------------------------GHHNFVNDIDIADVYSADNR  153 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTT---------------------------SCSSCEEEEEEEEEECTTCS
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccC---------------------------CCCCceEEEEEccccccccC
Confidence            457999999999999999887643333333332                           8999999999975       


Q ss_pred             ---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCccccc--------
Q 018591          139 ---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHS--------  204 (353)
Q Consensus       139 ---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~--------  204 (353)
                         ++|++|+.|++|++||++++.++..+..|..++.+++|+++   ++++++.|++|++||+++++.....        
T Consensus       154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~  233 (393)
T 4gq1_A          154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN  233 (393)
T ss_dssp             EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred             CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence               58999999999999999988888888889999999999543   7999999999999999877521100        


Q ss_pred             ------------ceeeeeccCCceeeEEEEc-CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE-------
Q 018591          205 ------------LKGILEGHKDVSLNSVVVS-DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL-------  264 (353)
Q Consensus       205 ------------~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-------  264 (353)
                                  ......+|...+ .++.|+ |+++.+++++.|+.+++||+..+...    ..+..+...+.       
T Consensus       234 ~~~~s~~~~~~~~~~~~~~~~~~v-~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~  308 (393)
T 4gq1_A          234 PWLLTLNTLPLVNTCHSSGIASSL-ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPN  308 (393)
T ss_dssp             CCSEEEESGGGC------CCSSSC-SEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCS
T ss_pred             ceEEecccccceeeeecccccccc-eeeeeecCCCCEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccc
Confidence                        001123444444 788876 79999999999999999999876321    11122211111       


Q ss_pred             -------------EEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC
Q 018591          265 -------------CVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       265 -------------~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg  329 (353)
                                   .+.+  ++.++++|+.||.|++||+.+++   .+..+.+|..+|++++|+|+    |++||+++.||
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---~~~~~~~~~~~V~svafspd----G~~LA~as~~G  381 (393)
T 4gq1_A          309 VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---SNSIPIQLGMPIVDFCWHQD----GSHLAIATEGS  381 (393)
T ss_dssp             EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT---CCEEEEECSSCEEEEEECTT----SSEEEEEESSE
T ss_pred             cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc---EEEEecCCCCcEEEEEEcCC----CCEEEEEeCCC
Confidence                         1111  24577889999999999999887   44556678899999999999    99999999776


Q ss_pred             eEEEEEcC
Q 018591          330 SLRVWWVS  337 (353)
Q Consensus       330 ~i~iw~~~  337 (353)
                       +.+|++.
T Consensus       382 -v~lvrL~  388 (393)
T 4gq1_A          382 -VLLTRLM  388 (393)
T ss_dssp             -EEEEEEG
T ss_pred             -eEEEEEe
Confidence             5566553

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=234.28  Aligned_cols=264  Identities=14%  Similarity=0.153  Sum_probs=212.1

Q ss_pred             EEEeCCCceeeEEeccCceeeEEEEEe-C----CEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591           39 IVWQQPDLRMFTKFGHGDGSVKAVVTV-G----NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY  113 (353)
Q Consensus        39 ~vwd~~~~~~~~~~~~~~~~v~~~~~~-~----~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (353)
                      ..|+....+.+..+.+|...|.+++|+ .    ++|++++.||.|++||+++.....                       
T Consensus        22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----------------------   78 (368)
T 3mmy_A           22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----------------------   78 (368)
T ss_dssp             -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----------------------
T ss_pred             ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----------------------
Confidence            345667778888899999999999998 2    689999999999999998733111                       


Q ss_pred             EeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCC--eEEEEcCC
Q 018591          114 VQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKG--IVYSASAD  187 (353)
Q Consensus       114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~--~l~~~~~d  187 (353)
                             ...+.+|...|.+++|+|  ++|++++.||.|++||+++++.+. +..|...|.+++|  .++  .+++++.|
T Consensus        79 -------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d  150 (368)
T 3mmy_A           79 -------PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWD  150 (368)
T ss_dssp             -------EEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETT
T ss_pred             -------EEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCC
Confidence                   123347999999999998  799999999999999999988776 4579999999999  444  79999999


Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC  267 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  267 (353)
                      |.|++||+++++     ....+..+..  +.++.+.  ...+++++.++.+++|+++..............+...+.++.
T Consensus       151 g~i~vwd~~~~~-----~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (368)
T 3mmy_A          151 KTLKFWDTRSSN-----PMMVLQLPER--CYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIF  221 (368)
T ss_dssp             SEEEEECSSCSS-----CSEEEECSSC--EEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEE
T ss_pred             CcEEEEECCCCc-----EEEEEecCCC--ceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEc
Confidence            999999999887     5566665542  2555555  458888999999999999887555555555555667777777


Q ss_pred             EcCcE----EEEecCCCeEEEEecCCCcceEEeccccCCCc------------CeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          268 LVGEF----LCSGSADKSIGIWKREAFGKLCRVGAITGHEG------------PVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       268 ~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~------------~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                      ++...    +++++.||.|++|+++.......+..+.+|..            +|++++|+|+    +++|++++.||.|
T Consensus       222 ~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~s~~~dg~i  297 (368)
T 3mmy_A          222 KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV----HGTLATVGSDGRF  297 (368)
T ss_dssp             ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT----TCCEEEEETTSCE
T ss_pred             ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecC----CCEEEEEccCCeE
Confidence            76544    99999999999999998743234556667766            7999999999    9999999999999


Q ss_pred             EEEEcCCCCCccccc
Q 018591          332 RVWWVSKQSSTSDSE  346 (353)
Q Consensus       332 ~iw~~~~~~~~~~~~  346 (353)
                      ++||+.+++.+....
T Consensus       298 ~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          298 SFWDKDARTKLKTSE  312 (368)
T ss_dssp             EEEETTTTEEEEECC
T ss_pred             EEEECCCCcEEEEec
Confidence            999999988776654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.1e-34  Score=232.92  Aligned_cols=249  Identities=14%  Similarity=0.118  Sum_probs=198.7

Q ss_pred             EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           50 TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      ....+|.+.|.+++|+  +++|++++.||.|++|++..+.....                             .....+|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-----------------------------~~~~~~~   55 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-----------------------------LLQSLRY   55 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------EEEEEEC
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------ceeeeec
Confidence            3446799999999998  78999999999999999987641110                             1122279


Q ss_pred             CCceEEEEEeC--C-eEEEecCCCcEEEEEc-CCceeeeeccc--cCcceEEEEEe-CCeEEEEcCCCcEEEEeCCC---
Q 018591          128 ADSISCLTVYN--G-LIYSGSWDKTLKVWRV-ADLKCLESIKA--HDDAVNGLVAS-KGIVYSASADGKIKAWGKEL---  197 (353)
Q Consensus       128 ~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~-~~~~~~~~~~~--~~~~v~~i~~~-~~~l~~~~~dg~i~iwd~~~---  197 (353)
                      ...|.+++|++  . ++++|+.||.|++||+ .+++. ..+..  |...|.+++|. ++.+++++.|+.|++||+++   
T Consensus        56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred             CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc
Confidence            99999999998  6 8999999999999999 77654 66778  99999999995 56999999999999999986   


Q ss_pred             ------CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc-cccceeeeeeccccceeEEEEEE--
Q 018591          198 ------GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV-EIVRWKLACETKAHEMAVLCVCL--  268 (353)
Q Consensus       198 ------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~--  268 (353)
                            .+     +...+. +...+ .+++|+|++  +++++.|+.|++||++. ....  .......+...+.++.+  
T Consensus       135 ~~~~~~~~-----~~~~~~-~~~~v-~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~  203 (342)
T 1yfq_A          135 GVIAVKNL-----NSNNTK-VKNKI-FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLP  203 (342)
T ss_dssp             BCEEEEES-----CSSSSS-SCCCE-EEEEECSSE--EEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCEEEEEECS
T ss_pred             ccccccCC-----eeeEEe-eCCce-EEEEecCCc--EEEEeCCCeEEEEECCcccccc--ceeeecCCCCceeEEEECC
Confidence                  44     333444 55544 999999987  99999999999999987 4322  22223345556666655  


Q ss_pred             -cCcEEEEecCCCeEEEEecCCC------cceEEeccccCCCc---------CeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591          269 -VGEFLCSGSADKSIGIWKREAF------GKLCRVGAITGHEG---------PVKCLQASPNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       269 -~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~l~s~~~dg~i~  332 (353)
                       +++++++++.||.|++|+++..      +   ....+..|..         .|++++|+|+    +++|++++.||.|+
T Consensus       204 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSS---KRFAFRCHRLNLKDTNLAYPVNSIEFSPR----HKFLYTAGSDGIIS  276 (342)
T ss_dssp             GGGCEEEEEETTSEEEEEECCTTCCSTTCT---TCEEEECCCCCTTCCSSCCCEEEEEECTT----TCCEEEEETTSCEE
T ss_pred             CCCCEEEEEecCCcEEEEEEcCCCcccccc---cceeeecccccccccccceeEEEEEEcCC----CCEEEEecCCceEE
Confidence             5789999999999999999876      3   3444566654         9999999999    99999999999999


Q ss_pred             EEEcCCCCCccccc
Q 018591          333 VWWVSKQSSTSDSE  346 (353)
Q Consensus       333 iw~~~~~~~~~~~~  346 (353)
                      +||+.+++.+....
T Consensus       277 vwd~~~~~~~~~~~  290 (342)
T 1yfq_A          277 CWNLQTRKKIKNFA  290 (342)
T ss_dssp             EEETTTTEEEEECC
T ss_pred             EEcCccHhHhhhhh
Confidence            99999988776654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-34  Score=240.27  Aligned_cols=264  Identities=9%  Similarity=0.035  Sum_probs=203.4

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      .-...|.+|+|+  |+++||++.|++|+  |.+.++   .+.+|...|.+++|++.-     .++.+.+|+.+...    
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~~----   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-----FENKLDFELAQQNG----   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-----CCCTTTTSCCCSSC----
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-----CcceEEEEeCCCce----
Confidence            345789999996  99999999999999  755554   447999999999998432     45555555543222    


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDD  169 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  169 (353)
                        ...+                            .|...|.+++|+|  ..|++++.||.|++||...  ++..+. |..
T Consensus        79 --~~~~----------------------------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~  125 (588)
T 2j04_A           79 --LLNS----------------------------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG  125 (588)
T ss_dssp             --SSTT----------------------------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS
T ss_pred             --Eeec----------------------------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC
Confidence              0000                            4678899999999  8899999999999999544  666676 665


Q ss_pred             -----ceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccc--cceeee----eccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          170 -----AVNGLVASKG--IVYSASADGKIKAWGKELGKSHCH--SLKGIL----EGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       170 -----~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                           .+.+++|+++  +|++|+.||+|++||+.++.....  .....+    .+|...+ .+++|+|+|  +++++.|+
T Consensus       126 ~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V-~sVawSPdg--Laass~D~  202 (588)
T 2j04_A          126 NLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV-THIVWYEDV--LVAALSNN  202 (588)
T ss_dssp             CSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE-EEEEEETTE--EEEEETTC
T ss_pred             ccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE-EEEEEcCCc--EEEEeCCC
Confidence                 4999999444  999999999999999998751000  023444    5566555 999999999  88888999


Q ss_pred             cEEEeeccccccceeeeeec-cccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe--ec
Q 018591          237 FVMGWEGNVEIVRWKLACET-KAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA--SP  313 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~--~~  313 (353)
                      .|++||+..+... .....+ .+|...|.+++|+++.||+++ ++.|++||+.+++   ......+|.+.|.+++|  +|
T Consensus       203 tVrlWd~~~~~~~-~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~va~~~s~  277 (588)
T 2j04_A          203 SVFSMTVSASSHQ-PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS---ISSLKTGSLENFHIIPLNHEK  277 (588)
T ss_dssp             CEEEECCCSSSSC-CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE---EEEEECSCCSCCCEEEETTCS
T ss_pred             eEEEEECCCCccc-cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe---EEEEEcCCCceEEEEEeeeCC
Confidence            9999999887311 112234 367788888888888999887 6999999999865   21223379999999999  99


Q ss_pred             CCCCCCeEEEEccCCCeEEEEEcC
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +    +..|+++++||+ ++|...
T Consensus       278 d----~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          278 E----STILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             S----CEEEEECSSCEE-EEEESS
T ss_pred             C----CCEEEEEcCCCC-EEEeec
Confidence            9    999999999999 999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2e-33  Score=237.59  Aligned_cols=258  Identities=16%  Similarity=0.200  Sum_probs=202.5

Q ss_pred             EEeccCceeeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee
Q 018591           50 TKFGHGDGSVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE  126 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (353)
                      .....|.+.|.+++|+   +.+|++++.||.|++|++........      +                .........+.+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------~----------------~~~~~~~~~~~~  179 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------P----------------SGECQPDLRLRG  179 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------T----------------TCCCCCSEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------c----------------cccCCCcEEecC
Confidence            3445678999999998   35899999999999999986421100      0                000112334458


Q ss_pred             cCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCcee-------eeeccccCcceEEEEEeC---CeEEEEcCCCcEEEE
Q 018591          127 HADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKC-------LESIKAHDDAVNGLVASK---GIVYSASADGKIKAW  193 (353)
Q Consensus       127 ~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~---~~l~~~~~dg~i~iw  193 (353)
                      |...|.+++|++  . +|++|+.||.|++||+.++..       ...+..|...|.+++|.+   ..+++++.||.|++|
T Consensus       180 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~  259 (430)
T 2xyi_A          180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW  259 (430)
T ss_dssp             CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence            999999999998  3 899999999999999987322       455678999999999943   388999999999999


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcCCCC-eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--C
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--G  270 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  270 (353)
                      |+++...  ......+..|...+ ++++|+|++. ++++|+.||.|++||++...   .....+..|...+.++.++  +
T Consensus       260 d~~~~~~--~~~~~~~~~~~~~v-~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          260 DTRNNNT--SKPSHTVDAHTAEV-NCLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHN  333 (430)
T ss_dssp             ETTCSCS--SSCSEEEECCSSCE-EEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSC
T ss_pred             ECCCCCC--CcceeEeecCCCCe-EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCC
Confidence            9997631  11445566777765 9999999987 68899999999999998742   3455666788889888886  4


Q ss_pred             -cEEEEecCCCeEEEEecCCCcc-----------eEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEEEEcC
Q 018591          271 -EFLCSGSADKSIGIWKREAFGK-----------LCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       271 -~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~iw~~~  337 (353)
                       .+|++++.||.|++||+.....           ...+..+.+|...|++++|+|+    +. +|++++.||.|++|++.
T Consensus       334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~----~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN----EPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSS----STTEEEEEETTSEEEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCC----CCCEEEEEECCCCEEEeEcc
Confidence             4799999999999999987321           1256667889999999999999    77 99999999999999987


Q ss_pred             CC
Q 018591          338 KQ  339 (353)
Q Consensus       338 ~~  339 (353)
                      +.
T Consensus       410 ~~  411 (430)
T 2xyi_A          410 EN  411 (430)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.8e-33  Score=236.73  Aligned_cols=251  Identities=18%  Similarity=0.209  Sum_probs=205.1

Q ss_pred             eeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCC----------ceeeEEeccCceeeEEEEEe--CC-EEEEec
Q 018591           10 AVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPD----------LRMFTKFGHGDGSVKAVVTV--GN-KVFTAH   73 (353)
Q Consensus        10 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~----------~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~   73 (353)
                      ..+.+|.+.|++++|+   +.+|++++.||.|++||+.+          .+.+..+.+|...|.+++|+  +. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            4566899999999996   46999999999999999876          67788899999999999998  44 999999


Q ss_pred             CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcE
Q 018591           74 QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTL  150 (353)
Q Consensus        74 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v  150 (353)
                      .||.|++|++..........                         .....+.+|...|.+++|+|   ..+++++.||.|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i  256 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVI-------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL  256 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEE-------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             CCCeEEEEeCCCCCCCCcee-------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence            99999999998743110000                         01223347999999999987   689999999999


Q ss_pred             EEEEcCCc---eeeeeccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591          151 KVWRVADL---KCLESIKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       151 ~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (353)
                      ++||++++   +.+..+..|...|++++|+++   .+++++.||.|++||++...    .+...+..|...+ .+++|+|
T Consensus       257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~~~~~h~~~v-~~i~~sp  331 (430)
T 2xyi_A          257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLHSFESHKDEI-FQVQWSP  331 (430)
T ss_dssp             EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSEEEECCSSCE-EEEEECS
T ss_pred             EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeEEeecCCCCE-EEEEECC
Confidence            99999987   567777889999999999442   68899999999999999754    2566777787766 9999999


Q ss_pred             CCC-eEEeecCCCcEEEeeccccccc----------eeeeeeccccceeEEEEEEc--Cc-EEEEecCCCeEEEEecCCC
Q 018591          225 DGK-WVYGGGSDGFVMGWEGNVEIVR----------WKLACETKAHEMAVLCVCLV--GE-FLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       225 ~~~-~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~iw~~~~~  290 (353)
                      +++ ++++++.|+.|++||+......          ........+|...+.++.++  +. +|++++.||.|++|++...
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            985 6899999999999999873211          14555667788889888886  55 8999999999999998753

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.8e-33  Score=229.42  Aligned_cols=249  Identities=14%  Similarity=0.158  Sum_probs=195.0

Q ss_pred             EEeccCceeeEEEEEe--CC-EEEEecC---CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           50 TKFGHGDGSVKAVVTV--GN-KVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~--~~-~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      ..+.+|...|.+++|+  +. ++++++.   ||.|++||+++++....                               .
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-------------------------------~   60 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-------------------------------R   60 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------------------------------E
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-------------------------------e
Confidence            3457799999999998  43 4556665   99999999987652111                               1


Q ss_pred             eeecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCCce-eeeeccccCcceEEEEEe--------CCeEEEEcCCCc
Q 018591          124 WIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRVADLK-CLESIKAHDDAVNGLVAS--------KGIVYSASADGK  189 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~--------~~~l~~~~~dg~  189 (353)
                      ..+|...|.+++|+|     .++++|+.||.|++||+.+++ ++..+.+|...|.++.|.        +..+++++.||.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            127899999999987     679999999999999999888 888899999999999662        339999999999


Q ss_pred             EEEEeCCCCCcccccceeeeeccC---CceeeEEE----EcCCCCeEEeecCCCcEEEeeccccccceeeeeecccccee
Q 018591          190 IKAWGKELGKSHCHSLKGILEGHK---DVSLNSVV----VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMA  262 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  262 (353)
                      |++||+++++.    ....+..+.   ...+.+++    |+|+++++++++.||.|++||++.+..     .....|...
T Consensus       141 i~vwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~  211 (357)
T 3i2n_A          141 VKVWDPRQKDD----PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNG  211 (357)
T ss_dssp             EEEECTTSCSS----CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSC
T ss_pred             EEEEeCCCCCC----cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCc
Confidence            99999988751    334443333   33458888    788999999999999999999998742     222455667


Q ss_pred             EEEEEE-----cCcEEEEecCCCeEEEEecCCCcceEEe--ccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEEE
Q 018591          263 VLCVCL-----VGEFLCSGSADKSIGIWKREAFGKLCRV--GAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRVW  334 (353)
Q Consensus       263 v~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~iw  334 (353)
                      +.++.+     ++.+|++++.||.|++||+++++....+  ..+.+|...|++++|+|+    +. +|++++.||.|++|
T Consensus       212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ----NRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT----EEEEEEEEETTSEEEEE
T ss_pred             eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC----CCcEEEEEeCCCcEEEe
Confidence            777776     4689999999999999999876532221  133489999999999999    77 89999999999999


Q ss_pred             EcCCCCCc
Q 018591          335 WVSKQSST  342 (353)
Q Consensus       335 ~~~~~~~~  342 (353)
                      |+..+...
T Consensus       288 d~~~~~~~  295 (357)
T 3i2n_A          288 KYEYPIQR  295 (357)
T ss_dssp             EEECCSCC
T ss_pred             ecCCCccc
Confidence            99876544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.2e-33  Score=237.85  Aligned_cols=242  Identities=13%  Similarity=0.108  Sum_probs=177.8

Q ss_pred             ceeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC--ceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            7 RSLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG--DGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      .....+.+|.++|++|+|+   +++|+||+.||+|++||++++........+  ...+.+++|+  +.+|++|+.||.|+
T Consensus       155 ~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~  234 (435)
T 4e54_B          155 PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVI  234 (435)
T ss_dssp             CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEE
T ss_pred             eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEe
Confidence            3455677999999999995   679999999999999999876555444433  4457788887  78999999999999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~  156 (353)
                      +||++...                                 ...+.+|...|.+++|+|   .++++|+.|+.|++||++
T Consensus       235 ~wd~~~~~---------------------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~  281 (435)
T 4e54_B          235 LLNMDGKE---------------------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR  281 (435)
T ss_dssp             EEESSSCB---------------------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETT
T ss_pred             eeccCcce---------------------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecc
Confidence            99986543                                 111237999999999998   478899999999999998


Q ss_pred             Cceeeee---ccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc-----eeeEEEEcCCC
Q 018591          157 DLKCLES---IKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV-----SLNSVVVSDDG  226 (353)
Q Consensus       157 ~~~~~~~---~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~  226 (353)
                      +.+....   ..+|...|++++|++  .+|++++.||.|++||+.++.     ....+..|...     .+....|+|++
T Consensus       282 ~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
T 4e54_B          282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD-----CPLGLIPHPHRHFQHLTPIKAAWHPRY  356 (435)
T ss_dssp             TCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS-----SEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred             cccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc-----cceEEecccccccccceeEEEEEcCCC
Confidence            8765443   357899999999944  399999999999999999876     33333322211     11344566655


Q ss_pred             CeEEeec------------CCCcEEEeeccccccceeeeeec-cccceeEE---EEEEcCcEEEEecCCCeEEEEecCCC
Q 018591          227 KWVYGGG------------SDGFVMGWEGNVEIVRWKLACET-KAHEMAVL---CVCLVGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       227 ~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~v~---~~~~~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      ..++++.            .++.|++||..++.    ....+ ..|...+.   .++++|++|++|+ |+.|+||+++++
T Consensus       357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~----~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK----MMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC----EEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc----EEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            5555443            34679999999874    33332 34555554   4556789998876 789999999886


Q ss_pred             c
Q 018591          291 G  291 (353)
Q Consensus       291 ~  291 (353)
                      +
T Consensus       432 k  432 (435)
T 4e54_B          432 R  432 (435)
T ss_dssp             -
T ss_pred             e
Confidence            5

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.7e-33  Score=238.51  Aligned_cols=253  Identities=14%  Similarity=0.144  Sum_probs=189.2

Q ss_pred             CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC----
Q 018591           55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA----  128 (353)
Q Consensus        55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  128 (353)
                      +.+.|.+++|+  +++|++|+.||.|++|++.++.......     .                ........+.+|.    
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-----~----------------~~~~~~~~~~~h~~~~~   85 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-----R----------------GEYNVYSTFQSHEPEFD   85 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC-----C----------------CCEEEEEEEECCCCEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc-----c----------------cceeEeccccccccccc
Confidence            57899999998  8899999999999999998765210000     0                0000122334676    


Q ss_pred             --------CceEEEEEeC----CeEEEecCCCcEEEEEcCCceee-----------------------------------
Q 018591          129 --------DSISCLTVYN----GLIYSGSWDKTLKVWRVADLKCL-----------------------------------  161 (353)
Q Consensus       129 --------~~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~-----------------------------------  161 (353)
                              ..|++++|+|    ..+++++.|+.|++||+.+++..                                   
T Consensus        86 ~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  165 (447)
T 3dw8_B           86 YLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE  165 (447)
T ss_dssp             GGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred             ccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence                    8899999998    27999999999999999765432                                   


Q ss_pred             ----ee-ccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccccccee-------eeeccCCceeeEEEEcCCC-
Q 018591          162 ----ES-IKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKG-------ILEGHKDVSLNSVVVSDDG-  226 (353)
Q Consensus       162 ----~~-~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~-  226 (353)
                          .. ..+|...|.+++|++  ..++++ .|+.|++||++....    ...       .+..|...+ .+++|+|++ 
T Consensus       166 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~  239 (447)
T 3dw8_B          166 ASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR----SFNIVDIKPANMEELTEVI-TAAEFHPNSC  239 (447)
T ss_dssp             EEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE----EEEEEECCCSSGGGCCCCE-EEEEECSSCT
T ss_pred             ccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc----eeeeeecccccccccCcce-EEEEECCCCC
Confidence                12 367999999999943  377887 899999999984331    222       245666665 999999998 


Q ss_pred             CeEEeecCCCcEEEeeccccccceeeeeeccccce------------eEEEEEEc--CcEEEEecCCCeEEEEecCC-Cc
Q 018591          227 KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEM------------AVLCVCLV--GEFLCSGSADKSIGIWKREA-FG  291 (353)
Q Consensus       227 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~v~~~~~~--~~~l~~~~~dg~i~iw~~~~-~~  291 (353)
                      ++|++++.||.|++||++.+.........+..|..            .+.++.++  +++|++++. +.|++||+++ ++
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence            99999999999999999987432222444555554            77777775  889999999 9999999987 55


Q ss_pred             ceEEeccccCCCcC---------------eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          292 KLCRVGAITGHEGP---------------VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       292 ~~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                         .+..+.+|...               +..++|+|+    +++|++|+.||.|++||+.+++.+
T Consensus       319 ---~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~----~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          319 ---PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS----DSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             ---CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT----SSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ---ccceeeccccccccccccccccccccceEEEECCC----CCEEEEeccCCEEEEEEcCCCcce
Confidence               56667777542               334999999    999999999999999999988764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.6e-33  Score=232.72  Aligned_cols=246  Identities=19%  Similarity=0.221  Sum_probs=193.4

Q ss_pred             eeeeeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCc-------eeeEEeccCceeeEEEEEe--C-CEEEEecC
Q 018591            8 SLAVLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDL-------RMFTKFGHGDGSVKAVVTV--G-NKVFTAHQ   74 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~   74 (353)
                      .+..+.+|.++|++++|+   +++|++|+.||.|++||+.++       +.+..+.+|...|.+++|+  + ++|++++.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            456788999999999995   689999999999999999987       6788899999999999998  3 68999999


Q ss_pred             CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEE
Q 018591           75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKV  152 (353)
Q Consensus        75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~i  152 (353)
                      ||.|++||+++++     .+..+..                         .+|...|.+++|+|  .+|++++.||.|++
T Consensus       153 dg~i~iwd~~~~~-----~~~~~~~-------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  202 (402)
T 2aq5_A          153 DNVILVWDVGTGA-----AVLTLGP-------------------------DVHPDTIYSVDWSRDGALICTSCRDKRVRV  202 (402)
T ss_dssp             TSCEEEEETTTTE-----EEEEECT-------------------------TTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCEEEEEECCCCC-----ccEEEec-------------------------CCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence            9999999998765     2222210                         26899999999998  79999999999999


Q ss_pred             EEcCCceeeeec-cccCcc-eEEEEEe-CC-eEEEE---cCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcC
Q 018591          153 WRVADLKCLESI-KAHDDA-VNGLVAS-KG-IVYSA---SADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSD  224 (353)
Q Consensus       153 wd~~~~~~~~~~-~~~~~~-v~~i~~~-~~-~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~  224 (353)
                      ||+++++.+..+ ..|.+. +.++.|. ++ +++++   +.|+.|++||+++.+.    ...... .+... +.+++|+|
T Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~-v~~~~~s~  277 (402)
T 2aq5_A          203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE----PLSLQELDTSSG-VLLPFFDP  277 (402)
T ss_dssp             EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS----CSEEEECCCCSS-CEEEEEET
T ss_pred             EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC----CceEEeccCCCc-eeEEEEcC
Confidence            999999999888 678765 8999993 33 66677   6899999999988651    222333 33344 59999999


Q ss_pred             CCCeEE-eecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591          225 DGKWVY-GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       225 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      ++++++ +++.||.|++||+..+........... +...+.++.++  +.+++  +.++.+++|++.+++
T Consensus       278 ~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          278 DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCG--GGTEEEEEEEEETTE
T ss_pred             CCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccccce--ecceeEEEEEcCCCc
Confidence            999986 566899999999998743222222222 44666666665  55555  456799999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=229.04  Aligned_cols=278  Identities=18%  Similarity=0.199  Sum_probs=185.7

Q ss_pred             CccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-----CCEEEEecCCCcEEEEEccc
Q 018591           14 GHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        14 ~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~   85 (353)
                      +|...|++++|+   +++|++++.||.|++||+.+++....+. +...+.++.+.     +.++++++.||.|++||+++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            699999999995   5699999999999999999999988887 46778888886     34899999999999999987


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCce-ee
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLK-CL  161 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~-~~  161 (353)
                      +..                                ...+.+|...|.+++|+|  . ++++++.||.|++||++++. ++
T Consensus       176 ~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~  223 (408)
T 4a11_B          176 GSC--------------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL  223 (408)
T ss_dssp             SCC--------------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred             cce--------------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence            651                                122337899999999999  4 58999999999999998754 33


Q ss_pred             eec---------------cccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591          162 ESI---------------KAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       162 ~~~---------------~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (353)
                      ..+               ..|...|.+++|+++  .+++++.||.|++||+++++................. .......
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  302 (408)
T 4a11_B          224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL-KFTVSCG  302 (408)
T ss_dssp             EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC-CCEECCS
T ss_pred             ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccc-eeEEecC
Confidence            333               568899999999443  8999999999999999987621111111111111111 2222333


Q ss_pred             CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCC
Q 018591          225 DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       225 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                      .+..+++++.++.|++||+.++    .....+.+|...+.++.++  +++|++|+.||.|++||+.+.+.   +.....+
T Consensus       303 ~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~  375 (408)
T 4a11_B          303 CSSEFVFVPYGSTIAVYTVYSG----EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP---VPDDDET  375 (408)
T ss_dssp             SSSCEEEEEETTEEEEEETTTC----CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------
T ss_pred             CCceEEEEecCCEEEEEECcCC----cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc---cCCCCce
Confidence            4556777788999999999987    5666777888888887774  88999999999999999998763   3322222


Q ss_pred             CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .   ....+.|..   ...+.+.+.|+.+++|+...
T Consensus       376 ~---~~~~~~~~~---~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          376 T---TKSQLNPAF---EDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ------------------------------------
T ss_pred             E---ecccccccc---ceeecccCccCceeecCCcc
Confidence            2   223344431   45667778899999998764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=236.60  Aligned_cols=259  Identities=10%  Similarity=0.121  Sum_probs=201.1

Q ss_pred             Cceeeeee-CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce-----eeEEEEEe--CCEEEEecCC
Q 018591            6 HRSLAVLS-GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-----SVKAVVTV--GNKVFTAHQD   75 (353)
Q Consensus         6 ~~~~~~l~-~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~s~~~d   75 (353)
                      ++....+. +|.+.|++++|+  |++||+++.||.|++||.+.  ++..+. |..     .|.+++|+  |++|++|+.|
T Consensus        74 ~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D  150 (588)
T 2j04_A           74 AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED  150 (588)
T ss_dssp             CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred             CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence            33333444 568999999997  99999999999999999644  666667 555     59999998  8999999999


Q ss_pred             CcEEEEEcccCcc--ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEE
Q 018591           76 SRIRVWKVSRSSE--NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVW  153 (353)
Q Consensus        76 g~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iw  153 (353)
                      |+|++||+.++..  ..+-.+.+++...                       .+|...|.+++|+|+-+++++.|+.|++|
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~-----------------------~gh~~~V~sVawSPdgLaass~D~tVrlW  207 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSD-----------------------AGSKDWVTHIVWYEDVLVAALSNNSVFSM  207 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSC-----------------------TTCCCCEEEEEEETTEEEEEETTCCEEEE
T ss_pred             CEEEEEECCCCccccccceeeeeeeccc-----------------------ccccccEEEEEEcCCcEEEEeCCCeEEEE
Confidence            9999999987642  1111222221100                       16889999999999339999999999999


Q ss_pred             EcCCcee---eeec-cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE--cCCCC
Q 018591          154 RVADLKC---LESI-KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV--SDDGK  227 (353)
Q Consensus       154 d~~~~~~---~~~~-~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~  227 (353)
                      |+..++.   ..++ .+|...|.+++|+++.+++++ +++|++||+.+++     ......+|...+ ..++|  +|++.
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~-----~~~~~~gh~~~V-~~va~~~s~d~~  280 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS-----ISSLKTGSLENF-HIIPLNHEKEST  280 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE-----EEEEECSCCSCC-CEEEETTCSSCE
T ss_pred             ECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe-----EEEEEcCCCceE-EEEEeeeCCCCC
Confidence            9987763   3456 478899999999867888887 6999999999876     323333777766 99999  99999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK  307 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~  307 (353)
                      .+++++.||+ ++|....                  ..+.+++..+++.  |+++++|+.....    +..+.+ ...|.
T Consensus       281 ~La~a~edG~-klw~~d~------------------~~~spd~~l~a~~--d~~v~lW~~~g~~----l~~~~~-~~~I~  334 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLEDE------------------LHVTADNIIAPYL--EKKFKKWSTIWNE----FNNYET-TLVIH  334 (588)
T ss_dssp             EEEECSSCEE-EEEESSS------------------EEEECCCSSHHHH--HHHHHHTTTTTTS----SSSSCC-EEEEE
T ss_pred             EEEEEcCCCC-EEEeecc------------------EEECCCceEEEEc--CCEEEEEECCCCc----eeeecc-ceEEE
Confidence            9999999999 9998761                  3366777766664  9999999976543    334444 67799


Q ss_pred             EEEeecCCCCCCeEEEEccC
Q 018591          308 CLQASPNAVGGGFLLYSGSL  327 (353)
Q Consensus       308 ~~~~~~~~~~~~~~l~s~~~  327 (353)
                      +++|+|+    |+.+|+++.
T Consensus       335 ~va~SPd----G~~lA~~~~  350 (588)
T 2j04_A          335 GISLSPD----GYSIAIVYD  350 (588)
T ss_dssp             EEEECTT----SSEEEEEEE
T ss_pred             EEEECCC----CCEEEEEEe
Confidence            9999999    999998863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.8e-32  Score=222.30  Aligned_cols=246  Identities=14%  Similarity=0.061  Sum_probs=177.0

Q ss_pred             EEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591           40 VWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR  117 (353)
Q Consensus        40 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (353)
                      +|++.+.+.+.....|...|.+++|+  +++|++|+.+| +++|+++....     ...                     
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----~~~---------------------   55 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----IMS---------------------   55 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----EEE---------------------
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----eee---------------------
Confidence            56777777887888999999999998  78888888775 78999875431     110                     


Q ss_pred             ccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEe
Q 018591          118 RHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWG  194 (353)
Q Consensus       118 ~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd  194 (353)
                              .+...+..+.+.+  +.+ ++++.|+.|++||..+++++..+. +...|.++.++++.++++ .|+.|++||
T Consensus        56 --------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~-~~~~i~i~d  125 (355)
T 3vu4_A           56 --------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS-YGDVISVFK  125 (355)
T ss_dssp             --------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE-ETTEEEEEE
T ss_pred             --------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE-EcCEEEEEE
Confidence                    1112355556655  555 678889999999999999998886 677999999987766665 478999999


Q ss_pred             CCCC-CcccccceeeeeccCCceeeEEEEcCCCCeEEe--ecCCCcEEEeeccccccc-----------eee-eeecccc
Q 018591          195 KELG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG--GGSDGFVMGWEGNVEIVR-----------WKL-ACETKAH  259 (353)
Q Consensus       195 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~-----------~~~-~~~~~~~  259 (353)
                      +.+. +     ....+..    ....+++++  .+++.  |+.||.|++||+..+...           ..+ ...+.+|
T Consensus       126 ~~~~~~-----~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h  194 (355)
T 3vu4_A          126 FGNPWK-----RITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH  194 (355)
T ss_dssp             SSTTCC-----BSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC
T ss_pred             CCCCce-----eeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence            9987 4     3333333    225567777  55665  689999999999875310           011 5567889


Q ss_pred             ceeEEEEEEc--CcEEEEecCCCe-EEEEecCCCcceEEecccc-C-CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          260 EMAVLCVCLV--GEFLCSGSADKS-IGIWKREAFGKLCRVGAIT-G-HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       260 ~~~v~~~~~~--~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      ...|.+++++  +++|++|+.|++ |++||+++++   .+..+. + |...|++++|+|+    +++|++++.|++|++|
T Consensus       195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~---~~~~~~~g~h~~~v~~~~~s~~----~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV---LVREFRRGLDRADVVDMKWSTD----GSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC---EEEEEECTTCCSCEEEEEECTT----SCEEEEEETTCEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc---EEEEEEcCCCCCcEEEEEECCC----CCEEEEEECCCEEEEE
Confidence            9999888875  889999999998 9999999887   566666 5 9999999999999    9999999999999999


Q ss_pred             EcCCCC
Q 018591          335 WVSKQS  340 (353)
Q Consensus       335 ~~~~~~  340 (353)
                      |++.+.
T Consensus       268 ~~~~~~  273 (355)
T 3vu4_A          268 EIFNDQ  273 (355)
T ss_dssp             ESSCCS
T ss_pred             EccCCC
Confidence            998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.7e-33  Score=227.23  Aligned_cols=230  Identities=13%  Similarity=0.037  Sum_probs=173.2

Q ss_pred             eCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEe
Q 018591           65 VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSG  144 (353)
Q Consensus        65 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~  144 (353)
                      ++..+++|+.||.|++||+++++.     +..+                             ....|.++.++|. ++++
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~-----~~~~-----------------------------~~~~v~~~~~~~~-~~s~   91 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKT-----ITTI-----------------------------TTPNPRTGGEHPA-IISR   91 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSC-----EEEE-----------------------------EEECCCTTCCCCS-EEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcE-----EEEE-----------------------------ecCCceeeeeCCc-eEEe
Confidence            478899999999999999988762     1111                             0234555666666 9999


Q ss_pred             cCCCcEEEEEcC---------Cceeeeecc-ccCcceEEEEEeC----CeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591          145 SWDKTLKVWRVA---------DLKCLESIK-AHDDAVNGLVASK----GIVYSASADGKIKAWGKELGKSHCHSLKGILE  210 (353)
Q Consensus       145 ~~dg~v~iwd~~---------~~~~~~~~~-~~~~~v~~i~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  210 (353)
                      +.|+.|++|+..         +++.+..+. .|..+|.++++++    +++++++.||+|++||+++++     ......
T Consensus        92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----~~~~~~  166 (343)
T 3lrv_A           92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----QYIVHS  166 (343)
T ss_dssp             CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----EEEEEC
T ss_pred             cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----EEEEEe
Confidence            999999999765         344344433 5668899999954    389999999999999999887     444444


Q ss_pred             ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEEc--CcEEEEecCCCeEEEEec
Q 018591          211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLV--GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       211 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~  287 (353)
                      .+....+.+++|+|++.+|++|+.||.|++||++++...   ...+.. |...|.++.++  +.+|++++ |+.|++||+
T Consensus       167 ~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~  242 (343)
T 3lrv_A          167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL  242 (343)
T ss_dssp             CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC---CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence            444444699999999999999999999999999987422   134455 88899888875  78999999 559999999


Q ss_pred             CCCcceEEeccccCCCcCeE--EEEeecCCCCCCeEEEEccC-CCeEEEEEcCCCCCc
Q 018591          288 EAFGKLCRVGAITGHEGPVK--CLQASPNAVGGGFLLYSGSL-DKSLRVWWVSKQSST  342 (353)
Q Consensus       288 ~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~~~~  342 (353)
                      ++.+....+..+..|...+.  +++|+|+    +++|++++. |+.|++|++.+....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~l~~~s~~d~~i~v~~~~~~~~~  296 (343)
T 3lrv_A          243 RKDVGTLAYPTYTIPEFKTGTVTYDIDDS----GKNMIAYSNESNSLTIYKFDKKTKN  296 (343)
T ss_dssp             TSSTTCBSSCCCBC-----CCEEEEECTT----SSEEEEEETTTTEEEEEEECTTTCS
T ss_pred             CCCCcceeecccccccccccceEEEECCC----CCEEEEecCCCCcEEEEEEcccccc
Confidence            98874433433334555555  6999999    999999888 999999999766543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.2e-31  Score=222.63  Aligned_cols=278  Identities=13%  Similarity=0.092  Sum_probs=211.1

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeE-----EeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFT-----KFGHGDGSVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      +.+..+..|. .+.+++|+  +.++++++.|+.|++||+.+++...     .+.+|...|.+++|+  +..+++++.|+.
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~  192 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA  192 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred             eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence            5556666554 45689996  6788888889999999999998887     345788899999996  778999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEE
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWR  154 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd  154 (353)
                      |++||+++++     .+.                           .+..|...+.+++|++  +.+ ++++.|+.|++||
T Consensus       193 v~~~d~~~~~-----~~~---------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d  240 (433)
T 3bws_A          193 VHVFDLKTLA-----YKA---------------------------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID  240 (433)
T ss_dssp             EEEEETTTCC-----EEE---------------------------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCce-----EEE---------------------------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence            9999998765     211                           1225788899999998  455 5666899999999


Q ss_pred             cCCceeeeeccccCcceEEEEEe-CC-eEEEEc--------CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591          155 VADLKCLESIKAHDDAVNGLVAS-KG-IVYSAS--------ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~~-~~-~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (353)
                      +++++.+..+..+ ..+.+++++ ++ .+++++        .|+.|++||+++++     ..... .+...+ ..++|+|
T Consensus       241 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-----~~~~~-~~~~~~-~~~~~~~  312 (433)
T 3bws_A          241 RKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-----LIDTI-GPPGNK-RHIVSGN  312 (433)
T ss_dssp             TTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-----EEEEE-EEEECE-EEEEECS
T ss_pred             CCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-----EEeec-cCCCCc-ceEEECC
Confidence            9999988888664 558999994 33 777777        48899999999876     33333 233344 8999999


Q ss_pred             CCCeE-EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecC---------------CCeEEEEe
Q 018591          225 DGKWV-YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSA---------------DKSIGIWK  286 (353)
Q Consensus       225 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---------------dg~i~iw~  286 (353)
                      +++.+ ++++.++.|++||+.++..    ...+. +...+.++.+  +++++++++.               ||.|++||
T Consensus       313 ~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          313 TENKIYVSDMCCSKIEVYDLKEKKV----QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID  387 (433)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEE----EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEECCCCcE----EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence            99755 6668999999999987732    22222 3344555555  5778887766               57999999


Q ss_pred             cCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcCC
Q 018591          287 REAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVSK  338 (353)
Q Consensus       287 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~  338 (353)
                      +.+++   .+..+.. ...+.+++|+|+    +++|++++ .|+.|++|+++.
T Consensus       388 ~~~~~---~~~~~~~-~~~~~~~~~s~d----g~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          388 TTTDT---VKEFWEA-GNQPTGLDVSPD----NRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TTTTE---EEEEEEC-SSSEEEEEECTT----SCEEEEEETTTTEEEEEEETT
T ss_pred             CCCCc---EEEEecC-CCCCceEEEcCC----CCEEEEEECCCCeEEEEEecC
Confidence            99876   3444444 457999999999    88888776 499999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.4e-30  Score=216.47  Aligned_cols=264  Identities=13%  Similarity=0.102  Sum_probs=203.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeeccccccce
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY  103 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~  103 (353)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+  ++++ ++++.|+.|++||+.+++     .+..+      
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-----~~~~~------   70 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-----VIATV------   70 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-----EEEEE------
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-----EEEEE------
Confidence            468889999999999999999999998875 47899998  6665 677799999999998775     22221      


Q ss_pred             eeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-
Q 018591          104 LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-  179 (353)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-  179 (353)
                                            .+...+.+++|+|  +.+ ++++.++.|++||+.+++.+..+.. ...+.+++|+++ 
T Consensus        71 ----------------------~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg  127 (391)
T 1l0q_A           71 ----------------------PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDG  127 (391)
T ss_dssp             ----------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred             ----------------------ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCC
Confidence                                  2334899999998  555 5566779999999999998888765 456899999433 


Q ss_pred             -eE-EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccceeeeeec
Q 018591          180 -IV-YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       180 -~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                       .+ ++++.++.|++||+.+++     ....+..+.. + ..++|+|+++++ ++++.++.|++||++++.    ....+
T Consensus       128 ~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~~~~-~-~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~  196 (391)
T 1l0q_A          128 KKLYVTNNGDKTVSVINTVTKA-----VINTVSVGRS-P-KGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTV  196 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTE-----EEEEEECCSS-E-EEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCc-----EEEEEecCCC-c-ceEEECCCCCEEEEEeCCCCEEEEEECCCCe----EEEEE
Confidence             45 788889999999999886     5555555433 3 899999999887 677889999999998873    22222


Q ss_pred             cccceeEEEEEE--cCcEEEEec---CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE-EEccCCCe
Q 018591          257 KAHEMAVLCVCL--VGEFLCSGS---ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL-YSGSLDKS  330 (353)
Q Consensus       257 ~~~~~~v~~~~~--~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l-~s~~~dg~  330 (353)
                      . +...+.++.+  ++++|++++   .++.|++||+.+++   .+..+..|. .+.+++|+|+    +++| ++++.|+.
T Consensus       197 ~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~-~~~~~~~s~d----g~~l~~s~~~d~~  267 (391)
T 1l0q_A          197 K-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---ITARIPVGP-DPAGIAVTPD----GKKVYVALSFXNT  267 (391)
T ss_dssp             E-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE---EEEEEECCS-SEEEEEECTT----SSEEEEEETTTTE
T ss_pred             e-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe---EEEEEecCC-CccEEEEccC----CCEEEEEcCCCCE
Confidence            2 2334555544  588888887   68999999999876   444555554 5799999999    7766 77789999


Q ss_pred             EEEEEcCCCCCcccc
Q 018591          331 LRVWWVSKQSSTSDS  345 (353)
Q Consensus       331 i~iw~~~~~~~~~~~  345 (353)
                      |++||+.+++.+...
T Consensus       268 v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          268 VSVIDTATNTITATM  282 (391)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCcEEEEE
Confidence            999999988765543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.4e-31  Score=218.78  Aligned_cols=239  Identities=14%  Similarity=0.103  Sum_probs=181.1

Q ss_pred             eeeCccCceEEEEECCcEEEEEe-----------CCCcEEEEeCCCceee----EEe-----ccCceeeEEEEEe--CCE
Q 018591           11 VLSGHVGSVSSLALCGEFILSAS-----------QGKDIIVWQQPDLRMF----TKF-----GHGDGSVKAVVTV--GNK   68 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~~~~l~s~~-----------~dg~v~vwd~~~~~~~----~~~-----~~~~~~v~~~~~~--~~~   68 (353)
                      .|.+|.+.|.+++++++.+++|.           .|+.+|+|++.+....    ...     ..+...+.+++|+  |++
T Consensus        68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~  147 (365)
T 4h5i_A           68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV  147 (365)
T ss_dssp             ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred             EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence            57789999999999988887764           4678999987654322    111     1234568888998  777


Q ss_pred             EE--EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591           69 VF--TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG  144 (353)
Q Consensus        69 l~--s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~  144 (353)
                      ++  +++.|++|++||+++..     .+..+                            .|...|.+++|+|  .+++++
T Consensus       148 la~as~~~d~~i~iwd~~~~~-----~~~~~----------------------------~~~~~V~~v~fspdg~~l~s~  194 (365)
T 4h5i_A          148 AAIASSKVPAIMRIIDPSDLT-----EKFEI----------------------------ETRGEVKDLHFSTDGKVVAYI  194 (365)
T ss_dssp             EEEEESCSSCEEEEEETTTTE-----EEEEE----------------------------ECSSCCCEEEECTTSSEEEEE
T ss_pred             EEEEECCCCCEEEEeECCCCc-----EEEEe----------------------------CCCCceEEEEEccCCceEEec
Confidence            65  45579999999998875     21111                            5778899999999  677777


Q ss_pred             cCCCcEEEEEcCCceeee--eccccCcceEEEEE-eCC-eEEEEcCCC----cEEEEeCCCCCcccccceeeeeccCCce
Q 018591          145 SWDKTLKVWRVADLKCLE--SIKAHDDAVNGLVA-SKG-IVYSASADG----KIKAWGKELGKSHCHSLKGILEGHKDVS  216 (353)
Q Consensus       145 ~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~i~~-~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (353)
                      + ++.+++|+..+++.+.  ....|...|.+++| +++ .+++++.|+    .++.||+...... ......+.+|...+
T Consensus       195 s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V  272 (365)
T 4h5i_A          195 T-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGI  272 (365)
T ss_dssp             C-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCE
T ss_pred             c-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec-ceeeeeecCCCCCe
Confidence            6 4567777777766543  34568889999999 333 788888777    6888998766411 11234556676665


Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeee-ccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~  289 (353)
                       ++++|+|++++|++|+.|+.|++||++++    ++... +.+|...|++++|+  +++|++|+.|++|+|||+..
T Consensus       273 -~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          273 -TSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             -EEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             -EeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence             99999999999999999999999999987    45544 57899999888774  89999999999999999964

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6e-29  Score=208.01  Aligned_cols=288  Identities=12%  Similarity=0.127  Sum_probs=210.1

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCC
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDS   76 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg   76 (353)
                      ..+++.+..+.+|.. +.+++|+  ++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+  +++|+ +++.++
T Consensus        19 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~   96 (391)
T 1l0q_A           19 VTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASS   96 (391)
T ss_dssp             TTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCC
Confidence            457788888888764 8999996  6665 777799999999999999999888765 89999998  66664 556779


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEE
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVW  153 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iw  153 (353)
                      .|++||+.+++     .+..+                            .+...+.+++|++  +.+ ++++.|+.|++|
T Consensus        97 ~v~v~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~  143 (391)
T 1l0q_A           97 TLSVIDTTSNT-----VAGTV----------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVI  143 (391)
T ss_dssp             EEEEEETTTTE-----EEEEE----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCe-----EEEEE----------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence            99999998765     21111                            2445688999998  455 788889999999


Q ss_pred             EcCCceeeeeccccCcceEEEEEeCC--eE-EEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE
Q 018591          154 RVADLKCLESIKAHDDAVNGLVASKG--IV-YSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY  230 (353)
Q Consensus       154 d~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  230 (353)
                      |+.+++.+..+..+ ..+.+++|+++  .+ ++++.++.|++||+++++     ....+.. ... +.+++|+|++++++
T Consensus       144 d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-----~~~~~~~-~~~-~~~~~~~~~g~~l~  215 (391)
T 1l0q_A          144 NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVKV-EAA-PSGIAVNPEGTKAY  215 (391)
T ss_dssp             ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEEC-SSE-EEEEEECTTSSEEE
T ss_pred             ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-----EEEEEec-CCC-ccceEECCCCCEEE
Confidence            99999988888765 45689999433  45 677889999999999876     4444443 333 48999999999999


Q ss_pred             eec---CCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEE-EEecCCCeEEEEecCCCcceEEeccccCCCc
Q 018591          231 GGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFL-CSGSADKSIGIWKREAFGKLCRVGAITGHEG  304 (353)
Q Consensus       231 ~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~  304 (353)
                      +++   .++.|++||+.++.    ....+..+.. +.++  +++++++ ++++.|+.|++||+.+++   .+..+..|..
T Consensus       216 ~~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~---~~~~~~~~~~  287 (391)
T 1l0q_A          216 VTNVDKYFNTVSMIDTGTNK----ITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNT---ITATMAVGKN  287 (391)
T ss_dssp             EEEECSSCCEEEEEETTTTE----EEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECSSS
T ss_pred             EEecCcCCCcEEEEECCCCe----EEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCc---EEEEEECCcC
Confidence            887   68999999998873    3333333333 3444  4557766 677899999999999876   3434444433


Q ss_pred             CeE---EEE------------eecCCCC------CCeEEEEccCCCeEEEEEcCCCCC
Q 018591          305 PVK---CLQ------------ASPNAVG------GGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       305 ~v~---~~~------------~~~~~~~------~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      +..   .+.            |+.+...      +...+...+.|..+++|++.++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          288 PYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             EECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             CCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence            211   112            2222100      014577778899999999987764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.8e-30  Score=217.45  Aligned_cols=204  Identities=16%  Similarity=0.083  Sum_probs=164.4

Q ss_pred             ecCCceEEEEEeC--CeE-EEecCCCcEEEEEcC--Cceeeeecc--ccCcceEEEEEeC--CeEEEEcCCCcEEEEeCC
Q 018591          126 EHADSISCLTVYN--GLI-YSGSWDKTLKVWRVA--DLKCLESIK--AHDDAVNGLVASK--GIVYSASADGKIKAWGKE  196 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~  196 (353)
                      +|...|.+++|+|  .+| ++++.||.|++||+.  +++.+..+.  .|...|.+++|++  ..|++++.+|.+++|++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence            6777899999999  564 899999999999999  888888876  5678999999944  389999999999999998


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCC---CCeEEeecCCCcEEEeeccccccceeeeee-ccccceeEEEEEE-cCc
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDD---GKWVYGGGSDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCL-VGE  271 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~  271 (353)
                      +..... .....+.+|...+ .+++|+|+   +++|++++.|+.|++||+.++.    .... ..+|...+.++.+ +++
T Consensus       180 ~~~~~~-~~~~~~~~h~~~v-~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~~sd~~  253 (450)
T 2vdu_B          180 SIPEEK-FTQEPILGHVSML-TDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF----IVDKWLFGHKHFVSSICCGKDY  253 (450)
T ss_dssp             SCCCSS-CCCCCSEECSSCE-EEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----CEEEECCCCSSCEEEEEECSTT
T ss_pred             Cccccc-ccceeeecccCce-EEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----eeeeeecCCCCceEEEEECCCC
Confidence            776110 0223566777665 99999999   9999999999999999998873    3333 4578888888888 589


Q ss_pred             EEEEecCCCeEEEEecCCCcceEEecccc----------------------CCCcCeEEEEeecCCCCCCeEEEEcc-CC
Q 018591          272 FLCSGSADKSIGIWKREAFGKLCRVGAIT----------------------GHEGPVKCLQASPNAVGGGFLLYSGS-LD  328 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------------------~h~~~v~~~~~~~~~~~~~~~l~s~~-~d  328 (353)
                      +|++++.|+.|++||+.+++....+....                      .+...|.+++|+|+    +++|++++ .|
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~----~~~l~~~~~~d  329 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN----LPFVAFFVEAT  329 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS----SSEEEEEETTC
T ss_pred             EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC----CCEEEEEECCC
Confidence            99999999999999999887433322100                      23457999999999    89999988 89


Q ss_pred             CeEEEEEc--CCC
Q 018591          329 KSLRVWWV--SKQ  339 (353)
Q Consensus       329 g~i~iw~~--~~~  339 (353)
                      +.|++|++  .++
T Consensus       330 ~~i~iw~~~~~~~  342 (450)
T 2vdu_B          330 KCIIILEMSEKQK  342 (450)
T ss_dssp             SEEEEEEECSSST
T ss_pred             CeEEEEEeccCCC
Confidence            99999999  444

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1.8e-30  Score=216.81  Aligned_cols=220  Identities=7%  Similarity=0.046  Sum_probs=158.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeE-----EeccCceeeEEEEEe----------CCEEEEecCCCcEEEEEcccCccce
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFT-----KFGHGDGSVKAVVTV----------GNKVFTAHQDSRIRVWKVSRSSENV   90 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~v~~~~~~----------~~~l~s~~~dg~i~~w~~~~~~~~~   90 (353)
                      +.+|++|+.|++|++||..+++...     .+.+|.+.|.+++|+          +++|++++.|++|++||+.++..  
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~--  178 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP--  178 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE--
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce--
Confidence            5689999999999999998876543     357899999999995          57899999999999999987651  


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeec---
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESI---  164 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~---  164 (353)
                                                    .....+|...+.+++|+|   .+|++|+.|+.|++||+++++.....   
T Consensus       179 ------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          179 ------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             ------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred             ------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence                                          112237889999999998   47999999999999999876543221   


Q ss_pred             ----------------------cccCcceEEEEEe---CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC------
Q 018591          165 ----------------------KAHDDAVNGLVAS---KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK------  213 (353)
Q Consensus       165 ----------------------~~~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  213 (353)
                                            .+|...+.++.|.   +..+++++.|+++++||+...+.     ...+..+.      
T Consensus       229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-----~~~l~~~~~~~~~~  303 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-----YNEISDSTMKLGPK  303 (393)
T ss_dssp             --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------
T ss_pred             CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-----CceEeeecCccccE
Confidence                                  3567788899882   34899999999999999987652     11111111      


Q ss_pred             ------------CceeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEec
Q 018591          214 ------------DVSLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGS  277 (353)
Q Consensus       214 ------------~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~  277 (353)
                                  ... ....++|  ++.++++|+.||.|++||..++.    .......|..+|.+++|  +|++||+++
T Consensus       304 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~----~~~~~~~~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          304 NLLPNVQGISLFPSL-LGACPHPRYMDYFATAHSQHGLIQLINTYEKD----SNSIPIQLGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             CCSCSEEEECSSCCS-SCCEECSSCTTEEEEEETTTTEEEEEETTCTT----CCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             EEccccccccccCcc-eeEEEccCCCCEEEEEECCCCEEEEEECCCCc----EEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence                        112 2233443  34467788999999999999873    33444567778887776  499999998


Q ss_pred             CCCeEEEEecC
Q 018591          278 ADKSIGIWKRE  288 (353)
Q Consensus       278 ~dg~i~iw~~~  288 (353)
                      .+| +.+|.+.
T Consensus       379 ~~G-v~lvrL~  388 (393)
T 4gq1_A          379 EGS-VLLTRLM  388 (393)
T ss_dssp             SSE-EEEEEEG
T ss_pred             CCC-eEEEEEe
Confidence            776 6666654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.8e-29  Score=207.69  Aligned_cols=266  Identities=18%  Similarity=0.177  Sum_probs=184.1

Q ss_pred             ceeeeeeCccCceEEEEEC----CcEEEEEeCCCcEEEEeCCCc---------eeeEEeccCceeeEEEEEe----CCEE
Q 018591            7 RSLAVLSGHVGSVSSLALC----GEFILSASQGKDIIVWQQPDL---------RMFTKFGHGDGSVKAVVTV----GNKV   69 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~----~~~l   69 (353)
                      +.+..+.+|..+|++++|+    +++|++|+.||.|++||+.++         +.+..+..|...|.+++|+    +.++
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            5678889999999999995    789999999999999999877         6678888999999999997    5689


Q ss_pred             EEecCCCcEEEEEcccCccceeEEe-eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEE
Q 018591           70 FTAHQDSRIRVWKVSRSSENVFRLV-DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYS  143 (353)
Q Consensus        70 ~s~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~  143 (353)
                      ++++.||.|++||++++........ .....                    .......|...+.++.|+|     ..+++
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~p~~~~~~~l~~  187 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKV--------------------LSIPPANHLQSDFCLSWCPSRFSPEKLAV  187 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEES--------------------CSCCCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccc--------------------cccccCCcccceeEEEeccCCCCCcEEEE
Confidence            9999999999999987652111000 00000                    0000116788999999986     78999


Q ss_pred             ecCCCcEEEEEcCCcee--eeeccccCcceEEEEE-eC-----CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc
Q 018591          144 GSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVA-SK-----GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV  215 (353)
Q Consensus       144 ~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~-~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  215 (353)
                      ++.|+.+.+|+...++.  +..+.+|...|++++| ++     .++++++.||.|++||++...     ...........
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~  262 (351)
T 3f3f_A          188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL-----SPLASEESLTN  262 (351)
T ss_dssp             EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred             ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc-----CccccCCcccc
Confidence            99999998888777654  7778899999999999 33     379999999999999998765     11111111111


Q ss_pred             eeeEEEEcCCCCeEEee----cCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCC
Q 018591          216 SLNSVVVSDDGKWVYGG----GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       216 ~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~  289 (353)
                      . .....++....+..+    .....+.+|+....    .....+.+|...+.++.++  +++|++|+.||.|++|++.+
T Consensus       263 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          263 S-NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             -----------------------------CCSEEE----EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             e-eccCCCcccccccccccccccceeeeecccccc----cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence            1 333333333333333    33344555555444    5667778898999888885  88999999999999999999


Q ss_pred             CcceEEeccccCC
Q 018591          290 FGKLCRVGAITGH  302 (353)
Q Consensus       290 ~~~~~~~~~~~~h  302 (353)
                      ++....+..+..|
T Consensus       338 ~~~~~~~~~~~~~  350 (351)
T 3f3f_A          338 SNEFKCMSVITAQ  350 (351)
T ss_dssp             TSCEEEEEEEC--
T ss_pred             Ccchhheeehccc
Confidence            8877676665544

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=3.7e-29  Score=197.22  Aligned_cols=175  Identities=13%  Similarity=0.050  Sum_probs=133.7

Q ss_pred             CCcEEEEeC-CCceeeEEeccCceeeEEEEEe-----CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeec
Q 018591           35 GKDIIVWQQ-PDLRMFTKFGHGDGSVKAVVTV-----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM  108 (353)
Q Consensus        35 dg~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (353)
                      |+.|++|++ ++++.+..+..|...+..++|+     +..|++++.|++|++||+++++     ++.++....       
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-----~l~tL~g~~-------  223 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-----LLKKMHIDD-------  223 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-----EEEEEECCC-------
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-----EEEEEcCCC-------
Confidence            889999998 5588888888887777777665     4899999999999999999887     433332100       


Q ss_pred             ccceeEeecccceeeeeecCCceEEEEEeC--Ce------------EEEecCCCcEEEEEcCCceeeeec-----cccCc
Q 018591          109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GL------------IYSGSWDKTLKVWRVADLKCLESI-----KAHDD  169 (353)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~------------l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~  169 (353)
                                       .+...+.+++|+|  .+            +++|+.|++|++||..+++.+..+     .+|..
T Consensus       224 -----------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~  286 (356)
T 2w18_A          224 -----------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG  286 (356)
T ss_dssp             --------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred             -----------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence                             1223566666666  22            477899999999999999887665     36666


Q ss_pred             ceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591          170 AVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG  243 (353)
Q Consensus       170 ~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  243 (353)
                      .+.+..+++..+++++.|++|++||+.+++     +...+.+|...++..++|+|+|++|++|+.|++|++||+
T Consensus       287 ~~lsg~~sg~~lASgS~DgTIkIWDl~tGk-----~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          287 RFLEGDVKDHCAAAILTSGTIAIWDLLLGQ-----CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCS-----EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eeEccccCCCEEEEEcCCCcEEEEECCCCc-----EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            666666677789999999999999999998     788888888877567999999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=3.9e-27  Score=199.68  Aligned_cols=262  Identities=13%  Similarity=0.110  Sum_probs=192.9

Q ss_pred             cEEEEeCCCc--eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccce
Q 018591           37 DIIVWQQPDL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN  112 (353)
Q Consensus        37 ~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (353)
                      .|..||..++  +.+..+..+. .+.+++|+  +..+++++.++.|++||+++++.     ....+.             
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~-----~~~~~~-------------  162 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT-----VRLSPP-------------  162 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE-----EEECCC-------------
T ss_pred             EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE-----eeecCc-------------
Confidence            4444555434  5666666554 45578887  55677788889999999988762     111110             


Q ss_pred             eEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eE-EEEcCC
Q 018591          113 YVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IV-YSASAD  187 (353)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l-~~~~~d  187 (353)
                               ..+.+|...|.+++|++  ..+++++.|+.|++||+++++.+..+..|...+.+++|+++  .+ ++++.|
T Consensus       163 ---------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  233 (433)
T 3bws_A          163 ---------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWIS  233 (433)
T ss_dssp             ---------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTT
T ss_pred             ---------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCC
Confidence                     01126888999999987  78889999999999999999999999889999999999443  45 566689


Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec--------CCCcEEEeeccccccceeeeeecccc
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--------SDGFVMGWEGNVEIVRWKLACETKAH  259 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~  259 (353)
                      +.|++||+++++     ....+..+. . +..++|+|+++++++++        .|+.|++||+.++..    .... .+
T Consensus       234 ~~i~~~d~~~~~-----~~~~~~~~~-~-~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~----~~~~-~~  301 (433)
T 3bws_A          234 EDISVIDRKTKL-----EIRKTDKIG-L-PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL----IDTI-GP  301 (433)
T ss_dssp             TEEEEEETTTTE-----EEEECCCCS-E-EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE----EEEE-EE
T ss_pred             CcEEEEECCCCc-----EEEEecCCC-C-ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE----Eeec-cC
Confidence            999999999876     444444433 2 49999999999999887        588999999988732    2222 23


Q ss_pred             ceeEEEEEE--cCc-EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC---------
Q 018591          260 EMAVLCVCL--VGE-FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL---------  327 (353)
Q Consensus       260 ~~~v~~~~~--~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~---------  327 (353)
                      ...+.++.+  +++ ++++++.++.|++||+.+++   .+..+. +...+.+++|+|+    +++|++++.         
T Consensus       302 ~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~---~~~~~~-~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~  373 (433)
T 3bws_A          302 PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK---VQKSIP-VFDKPNTIALSPD----GKYLYVSCRGPNHPTEGY  373 (433)
T ss_dssp             EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE---EEEEEE-CSSSEEEEEECTT----SSEEEEEECCCCCTTTCT
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc---EEEEec-CCCCCCeEEEcCC----CCEEEEEecCCCcccccc
Confidence            334445554  565 55777899999999999876   333333 6678999999999    888887776         


Q ss_pred             ------CCeEEEEEcCCCCCccccc
Q 018591          328 ------DKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       328 ------dg~i~iw~~~~~~~~~~~~  346 (353)
                            ||.|++||+.+++.+....
T Consensus       374 ~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          374 LKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             TSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             ccccccceEEEEEECCCCcEEEEec
Confidence                  5799999999887665443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=5.1e-27  Score=197.02  Aligned_cols=269  Identities=10%  Similarity=0.008  Sum_probs=196.9

Q ss_pred             CceEEEEEC---CcEEEEEe----CCC----cEEEEeC--CCceee--EEeccCceeeEEEEEe----------------
Q 018591           17 GSVSSLALC---GEFILSAS----QGK----DIIVWQQ--PDLRMF--TKFGHGDGSVKAVVTV----------------   65 (353)
Q Consensus        17 ~~v~~~~~~---~~~l~s~~----~dg----~v~vwd~--~~~~~~--~~~~~~~~~v~~~~~~----------------   65 (353)
                      ..+...+|+   .+++++|+    .||    .|++||+  .+++.+  ..+.+|...+..+++.                
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            456666664   45777886    467    9999999  888877  4577787777666553                


Q ss_pred             CCEEEEecCC------CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-
Q 018591           66 GNKVFTAHQD------SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-  138 (353)
Q Consensus        66 ~~~l~s~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  138 (353)
                      +..++.++.+      +.|++||++...                                 .+.+.+|...+.+++|+| 
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~---------------------------------~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN---------------------------------QFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS---------------------------------CEEEEEESSCEEEEEECTT
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC---------------------------------CEEEeCCCCcceeeEEcCC
Confidence            5677766654      799999997543                                 222337888999999999 


Q ss_pred             -CeEEEecCCC---cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCCc--EEEEeCCCCCcccccceeee
Q 018591          139 -GLIYSGSWDK---TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADGK--IKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       139 -~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~  209 (353)
                       +.|++++.++   .|++||+.+++.. .+..|...+.+++|+++  .|+ +++.++.  |++||+.+++     . ..+
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~-~~l  262 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----I-RQV  262 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----E-EEC
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----E-EeC
Confidence             7888888875   9999999988775 45667889999999443  455 6666655  9999998876     2 445


Q ss_pred             eccCCceeeEEEEcCCCCeEEeecC-CC--cEEEeeccccccceeeeeeccccceeEE--EEEEcCcEEEEecCC---Ce
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGGS-DG--FVMGWEGNVEIVRWKLACETKAHEMAVL--CVCLVGEFLCSGSAD---KS  281 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~~d---g~  281 (353)
                      ..+.... .+++|+|+|++|++++. ++  .|.+||+.++..     ..+..+...+.  +++++|++|++++.+   ..
T Consensus       263 ~~~~~~~-~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~  336 (415)
T 2hqs_A          263 TDGRSNN-TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH  336 (415)
T ss_dssp             CCCSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             cCCCCcc-cceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceE
Confidence            5555544 89999999998888775 45  577778877631     12222333444  445568888887764   68


Q ss_pred             EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEcCCCC
Q 018591          282 IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWVSKQS  340 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~~~  340 (353)
                      |++||+.+++.    ..+..|. .+.+++|+|+    +++|++++.|+   .|++||+..+.
T Consensus       337 i~~~d~~~~~~----~~l~~~~-~~~~~~~spd----g~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          337 IAKQDLATGGV----QVLSSTF-LDETPSLAPN----GTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEETTTCCE----EECCCSS-SCEEEEECTT----SSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             EEEEECCCCCE----EEecCCC-CcCCeEEcCC----CCEEEEEEcCCCccEEEEEECCCCc
Confidence            99999998763    2344454 8999999999    99999988877   89999987544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=2.6e-26  Score=198.40  Aligned_cols=275  Identities=12%  Similarity=0.144  Sum_probs=203.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEc--ccCccceeEEeeccccc
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKV--SRSSENVFRLVDTLPTT  100 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~--~~~~~~~~~~~~~~~~~  100 (353)
                      ++.++++++.|++|.+||..+++++..+..+.. +..+.++  +++|++++.|+.|++||+  .+.+     .+..+   
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i---  218 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----KVAEI---  218 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----EEEEE---
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----EEEEE---
Confidence            378899999999999999999999999984333 7788887  889999999999999999  4443     22222   


Q ss_pred             cceeeeecccceeEeecccceeeeeecCCceEEEEEeC------CeEEEec-CCCcEEEEEcCCceeeeeccc-------
Q 018591          101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN------GLIYSGS-WDKTLKVWRVADLKCLESIKA-------  166 (353)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~-~dg~v~iwd~~~~~~~~~~~~-------  166 (353)
                                               .+......++|+|      +++++++ .+++|.+||..+++++..+..       
T Consensus       219 -------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          219 -------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             -------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             -------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence                                     2344578888985      5677776 489999999999998888754       


Q ss_pred             ---cC-cceEEEEEeC-C--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcE
Q 018591          167 ---HD-DAVNGLVASK-G--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFV  238 (353)
Q Consensus       167 ---~~-~~v~~i~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i  238 (353)
                         |. ..+.++.+++ +  .+++...++.|.+||..+.+..   ....+. +...+ ..++|+|++++++++ ..+++|
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l---~~~~i~-~~~~~-~~~~~spdg~~l~va~~~~~~v  348 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL---TVTSIG-AAPFL-HDGGWDSSHRYFMTAANNSNKV  348 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC---EEEEEE-CCSSC-CCEEECTTSCEEEEEEGGGTEE
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc---eeEEec-cCcCc-cCceECCCCCEEEEEecCCCeE
Confidence               22 2688888843 2  6778888999999999876511   011222 33334 889999999977654 568899


Q ss_pred             EEeeccccccceeeeeeccccceeEEEE-EEc-CcEEEEec-CCCeEEEEecCCCcc----eEEeccccCCCcCeEEEEe
Q 018591          239 MGWEGNVEIVRWKLACETKAHEMAVLCV-CLV-GEFLCSGS-ADKSIGIWKREAFGK----LCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~l~~~~-~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~  311 (353)
                      .+||..+++...........|......+ .++ +..++++. .|++|.+||..+.+.    ...+.++.+|.+.+..+++
T Consensus       349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~  428 (543)
T 1nir_A          349 AVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT  428 (543)
T ss_dssp             EEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             EEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc
Confidence            9999998843322221112244333333 455 56677765 689999999988211    2377888889888999999


Q ss_pred             ecCCCCCCeEEEEcc-------CCCeEEEEEcCCCCCc
Q 018591          312 SPNAVGGGFLLYSGS-------LDKSLRVWWVSKQSST  342 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~-------~dg~i~iw~~~~~~~~  342 (353)
                      +|+    +++|++++       .+++|.+||+.+.+..
T Consensus       429 ~pd----g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          429 HPK----SSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CTT----CCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCC----CCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            999    99999987       2779999999998876

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=1.3e-25  Score=194.04  Aligned_cols=310  Identities=10%  Similarity=0.075  Sum_probs=219.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeC--CCceeeEEeccCceeeEEEEEe------CCEEEEe
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQ--PDLRMFTKFGHGDGSVKAVVTV------GNKVFTA   72 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~------~~~l~s~   72 (353)
                      ..+++++.++..+.. +.+++|+  |++|++++.|++|++||+  .+++.+..+..+ .....++|+      +++++++
T Consensus       166 ~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~  243 (543)
T 1nir_A          166 GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAG  243 (543)
T ss_dssp             TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEE
T ss_pred             CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEE
Confidence            467888899984333 8899996  899999999999999999  889999888854 456778775      5688888


Q ss_pred             c-CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-CceEEEEEeC---CeEEEecCC
Q 018591           73 H-QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN---GLIYSGSWD  147 (353)
Q Consensus        73 ~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~---~~l~~~~~d  147 (353)
                      + .+++|.+||..+.+     .+..++......               ...  ..|. ..+..+.+++   ..+++...+
T Consensus       244 ~~~~~~v~v~D~~t~~-----~~~~i~~~g~~~---------------~~~--~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          244 AYWPPQFAIMDGETLE-----PKQIVSTRGMTV---------------DTQ--TYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             EEESSEEEEEETTTCC-----EEEEEECCEECS---------------SSC--CEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             EccCCeEEEEeccccc-----cceeecccCccc---------------Ccc--ccccCCceEEEEECCCCCEEEEEECCC
Confidence            7 48999999988765     222222100000               000  0133 3788899987   567788889


Q ss_pred             CcEEEEEcCCceeee--eccccCcceEEEEEeCC--eEE-EEcCCCcEEEEeCCCCCcccccceeeeec----cCCceee
Q 018591          148 KTLKVWRVADLKCLE--SIKAHDDAVNGLVASKG--IVY-SASADGKIKAWGKELGKSHCHSLKGILEG----HKDVSLN  218 (353)
Q Consensus       148 g~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~--~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~  218 (353)
                      +.|.+||+.+.+.+.  .+ .+...+.++.|+++  +++ ++..+++|.+||..+++     +...+..    |.... .
T Consensus       302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-----l~~~i~~g~~ph~g~g-~  374 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-----LSALVDVGKTPHPGRG-A  374 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-----EEEEEECSSSBCCTTC-E
T ss_pred             CeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-----EEEeeccCCCCCCCCC-c
Confidence            999999998765443  33 35667788999443  444 55668999999999987     5555543    33322 2


Q ss_pred             EEEEcCC-CCeEEeec-CCCcEEEeeccccc---cceeeeeeccccceeE--EEEEEcCcEEEEec-------CCCeEEE
Q 018591          219 SVVVSDD-GKWVYGGG-SDGFVMGWEGNVEI---VRWKLACETKAHEMAV--LCVCLVGEFLCSGS-------ADKSIGI  284 (353)
Q Consensus       219 ~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~-------~dg~i~i  284 (353)
                      .+ ++|+ +..++++. .|++|.+||+.+..   ..++....+..+...+  ..+++++++|++++       .+++|.+
T Consensus       375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v  453 (543)
T 1nir_A          375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV  453 (543)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred             cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence            22 4677 66666665 68999999998721   1246667777665544  44566799999987       2679999


Q ss_pred             EecCCCcce-EEec--c---ccCCCcCeEEEEeecCCCCCCeEEEEc-----cCCCeEEEEEcCCCCCcccccCC
Q 018591          285 WKREAFGKL-CRVG--A---ITGHEGPVKCLQASPNAVGGGFLLYSG-----SLDKSLRVWWVSKQSSTSDSEEK  348 (353)
Q Consensus       285 w~~~~~~~~-~~~~--~---~~~h~~~v~~~~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~~~~~~~~~~~~  348 (353)
                      ||+.+++.. ..+.  .   +..+...+..+.|+|+    |+.|+++     +.|+.|.|||.++++++...+..
T Consensus       454 ~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          454 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR----GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             EETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS----SSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EECCCCCCCeEEeechhhcccCCCCCceEeccCCCC----CCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence            999988754 2221  1   2456778999999999    8888765     35899999999999988877643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=6.8e-26  Score=190.18  Aligned_cols=260  Identities=11%  Similarity=-0.025  Sum_probs=192.4

Q ss_pred             CCCcee--eeeeCccCceEEEEEC----------------CcEEEEEeCC------CcEEEEeCCCceeeEEeccCceee
Q 018591            4 KSHRSL--AVLSGHVGSVSSLALC----------------GEFILSASQG------KDIIVWQQPDLRMFTKFGHGDGSV   59 (353)
Q Consensus         4 ~~~~~~--~~l~~h~~~v~~~~~~----------------~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~v   59 (353)
                      .+++++  ..+.+|...+..++++                +..++.++.+      +.|++||+. +.....+..|...+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v  181 (415)
T 2hqs_A          103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPL  181 (415)
T ss_dssp             STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCE
T ss_pred             CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcc
Confidence            466666  5588998888887764                5677776654      799999987 45566777788899


Q ss_pred             EEEEEe--CCEEEEecCCC---cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591           60 KAVVTV--GNKVFTAHQDS---RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL  134 (353)
Q Consensus        60 ~~~~~~--~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  134 (353)
                      .+++|+  +++|++++.++   .|++||+++++..                                 .+..|...+.++
T Consensus       182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------------------------------~l~~~~~~~~~~  228 (415)
T 2hqs_A          182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------------------------QVASFPRHNGAP  228 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------------------------------EEECCSSCEEEE
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------------------------------EeecCCCcccCE
Confidence            999998  78899998875   9999999877521                                 122577789999


Q ss_pred             EEeC--CeEE-EecCCCc--EEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcC-CC--cEEEEeCCCCCccccc
Q 018591          135 TVYN--GLIY-SGSWDKT--LKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASA-DG--KIKAWGKELGKSHCHS  204 (353)
Q Consensus       135 ~~~~--~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~-dg--~i~iwd~~~~~~~~~~  204 (353)
                      +|+|  +.|+ +++.++.  |++||+.+++. ..+..|...+.+++|+++  .|++++. ++  .|.+||+.+++     
T Consensus       229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-----  302 (415)
T 2hqs_A          229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----  302 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----
T ss_pred             EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-----
Confidence            9999  5566 6666654  99999988766 566678889999999443  5766665 45  67778888765     


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeecCC---CcEEEeeccccccceeeeeecccc-ceeEEEEEEcCcEEEEecCCC
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---GFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCLVGEFLCSGSADK  280 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~dg  280 (353)
                      . ..+..+... +..++|+|+|++|++++.+   ..|.+||+.++..    . .+..+ .....+++++|++|++++.++
T Consensus       303 ~-~~l~~~~~~-~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----~-~l~~~~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          303 P-QRITWEGSQ-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----Q-VLSSTFLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             C-EECCCSSSE-EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----E-ECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred             E-EEEecCCCc-ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----E-EecCCCCcCCeEEcCCCCEEEEEEcCC
Confidence            2 233334443 4889999999999888764   5899999988732    1 12222 333445556789888888776


Q ss_pred             ---eEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          281 ---SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       281 ---~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                         .|++||+...    ....+.+|.+.|.+++|+|.
T Consensus       376 ~~~~l~~~d~~g~----~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          376 MGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             TEEEEEEEETTSC----CEEECCCSSSEEEEEEECCC
T ss_pred             CccEEEEEECCCC----cEEEeeCCCCCCcCCccccc
Confidence               8999998754    34557889999999999997

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=5.9e-23  Score=167.69  Aligned_cols=275  Identities=9%  Similarity=0.037  Sum_probs=183.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-CCcEEEEEcccCccceeEEeeccccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      +..+++++.++.|++||..+++....+..+.... .++++  ++++++++. ++.|.+||+.++...    ..       
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~-------   77 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----VV-------   77 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----EE-------
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----EE-------
Confidence            5568888899999999999999988887766666 88887  666666554 889999999877620    11       


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC---cEEEEEcCCceeeeeccccCcceEEEEEe
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK---TLKVWRVADLKCLESIKAHDDAVNGLVAS  177 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~i~~~  177 (353)
                                          .+..+..+..+++|+|  ++++++..++   .|.+||+.+++.+..+.. .....+++|+
T Consensus        78 --------------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s  136 (331)
T 3u4y_A           78 --------------------AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS  136 (331)
T ss_dssp             --------------------EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC
T ss_pred             --------------------ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC
Confidence                                1113444554589998  6677555553   899999999998887765 4456899994


Q ss_pred             CC--eEE-EEcCCCc-EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeeccccccceee
Q 018591          178 KG--IVY-SASADGK-IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       178 ~~--~l~-~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~  252 (353)
                      ++  .++ +...++. +.+|++.............+ .....+ ..++|+|++++++ ++..++.|.+||+.++.... .
T Consensus       137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~-~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~  213 (331)
T 3u4y_A          137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRP-FNITFTPDGNFAFVANLIGNSIGILETQNPENIT-L  213 (331)
T ss_dssp             TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSE-EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-E
T ss_pred             CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCc-cceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-e
Confidence            43  444 4455688 99999986441111111122 222334 8999999999654 55578999999998774310 0


Q ss_pred             eeeccc-cceeEEEEEEcCcEEEEe-cCCCeEEEEecCCCcceEEeccccCC----Cc---CeEEEEeecCCCCCCeEEE
Q 018591          253 ACETKA-HEMAVLCVCLVGEFLCSG-SADKSIGIWKREAFGKLCRVGAITGH----EG---PVKCLQASPNAVGGGFLLY  323 (353)
Q Consensus       253 ~~~~~~-~~~~v~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~h----~~---~v~~~~~~~~~~~~~~~l~  323 (353)
                      ...+.. ....-.+++++|++++++ ..++.|.+||..+++.. .+..+..+    ..   ....++|+|+    +++|+
T Consensus       214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~spd----g~~l~  288 (331)
T 3u4y_A          214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS-FVKSFGHGLLIDPRPLFGANQMALNKT----ETKLF  288 (331)
T ss_dssp             EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE-EEEEEECCCCCCCGGGTTCCCEEECTT----SSEEE
T ss_pred             eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee-eecccccccccCCCCcccccceEECCC----CCEEE
Confidence            222222 222335566778866554 46888999999886531 12222211    22   2356899999    87775


Q ss_pred             E-ccCCCeEEEEEcCCCCC
Q 018591          324 S-GSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       324 s-~~~dg~i~iw~~~~~~~  341 (353)
                      + +..++.|.+|++.....
T Consensus       289 v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          289 ISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEETTTTEEEEEETTSCEE
T ss_pred             EecCCCCcEEEEEecCCcc
Confidence            4 55567999999987653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.6e-23  Score=170.60  Aligned_cols=269  Identities=10%  Similarity=0.158  Sum_probs=173.8

Q ss_pred             EEEEEeCCCcEEEEeCC-Cc--eeeEEeccCceeeEEEEEe--CCEEEEecCC-CcEEEEEcc--cCccceeEEeecccc
Q 018591           28 FILSASQGKDIIVWQQP-DL--RMFTKFGHGDGSVKAVVTV--GNKVFTAHQD-SRIRVWKVS--RSSENVFRLVDTLPT   99 (353)
Q Consensus        28 ~l~s~~~dg~v~vwd~~-~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-g~i~~w~~~--~~~~~~~~~~~~~~~   99 (353)
                      ++++++.|+.|++||+. ++  +.+..+ .+...+..++|+  +++|++++.+ +.|++|+++  ++..   ..+..+  
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---~~~~~~--   80 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---TFAAES--   80 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EEEEEE--
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce---eecccc--
Confidence            44455789999999985 33  333333 356678889997  7778888776 999999997  3331   111111  


Q ss_pred             ccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEc---CCceeeeeccccCcceEE
Q 018591          100 TKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRV---ADLKCLESIKAHDDAVNG  173 (353)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~---~~~~~~~~~~~~~~~v~~  173 (353)
                                                .....+..++|+|  +.++++ ..++.|.+||+   ...+.+..+.. ...+.+
T Consensus        81 --------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~  133 (343)
T 1ri6_A           81 --------------------------ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHS  133 (343)
T ss_dssp             --------------------------ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCC
T ss_pred             --------------------------ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceE
Confidence                                      1122677899998  556555 45889999999   44455555544 345788


Q ss_pred             EEEeCC--eEEEEc-CCCcEEEEeCCC-CCccccccee--eeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeecccc
Q 018591          174 LVASKG--IVYSAS-ADGKIKAWGKEL-GKSHCHSLKG--ILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNVE  246 (353)
Q Consensus       174 i~~~~~--~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~  246 (353)
                      ++|+++  .+++++ .++.|.+||+.+ ++..   ...  ....+....+..++|+|+++++++ +..++.|.+|++...
T Consensus       134 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~  210 (343)
T 1ri6_A          134 ANISPDNRTLWVPALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP  210 (343)
T ss_dssp             CEECTTSSEEEEEEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred             EEECCCCCEEEEecCCCCEEEEEEecCCCcee---eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            889433  566665 899999999987 4310   111  223333333488999999997654 458899999999642


Q ss_pred             ccceeeeee---cccc---ceeE--EEEEEcCcEEE-EecCCCeEEEEecCC-CcceEEeccccCCCcCeEEEEeecCCC
Q 018591          247 IVRWKLACE---TKAH---EMAV--LCVCLVGEFLC-SGSADKSIGIWKREA-FGKLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       247 ~~~~~~~~~---~~~~---~~~v--~~~~~~~~~l~-~~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      .........   ....   ...+  .++++++++|+ ++..++.|++||+.. ......+..+..+.. +.+++|+|+  
T Consensus       211 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~d--  287 (343)
T 1ri6_A          211 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHS--  287 (343)
T ss_dssp             TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTT--
T ss_pred             CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCC--
Confidence            211111111   1111   1223  44555677666 555899999999983 122334444544444 899999999  


Q ss_pred             CCCeEEEEcc-CCCeEEEEEcC
Q 018591          317 GGGFLLYSGS-LDKSLRVWWVS  337 (353)
Q Consensus       317 ~~~~~l~s~~-~dg~i~iw~~~  337 (353)
                        +++|++++ .|+.|.+|++.
T Consensus       288 --g~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          288 --GKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             --SSEEEEECTTTCEEEEEEEE
T ss_pred             --CCEEEEecCCCCeEEEEEEc
Confidence              88777776 68999999655

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=4.2e-23  Score=168.90  Aligned_cols=270  Identities=9%  Similarity=0.072  Sum_probs=187.6

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCce--eeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDG--SVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      ++|++++.++.|++||+.+++.+..+.....  .+..++++  ++.+ +++..++.|.+||+.+++     .+..++...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-----~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-----TLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-----EEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-----eEeeEEcCC
Confidence            5899999999999999999999888764332  46778887  5555 566678899999998775     221111100


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec------------CCCcEEEEEcCCceeeeecccc
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS------------WDKTLKVWRVADLKCLESIKAH  167 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~  167 (353)
                      .                      ..|...+..++|++  +.++++.            .++.|.+||+.+++.+..+.. 
T Consensus        77 ~----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-  133 (337)
T 1pby_B           77 P----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             T----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             c----------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence            0                      00122455788888  5777775            579999999999888877754 


Q ss_pred             CcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---------
Q 018591          168 DDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---------  236 (353)
Q Consensus       168 ~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------  236 (353)
                      ...+.++++++ + .++++  ++.|.+||+.+++     ....+..+...  ..+.|+|+++.++..+..+         
T Consensus       134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-----~~~~~~~~~~~--~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-----LVEDKPIQSWE--AETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-----EEEEECSTTTT--TTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-----EeeeeeccccC--CCceeCCCccEEeeeccCCCceeeeeec
Confidence            45677888843 3 56666  6899999999876     44444433311  2337899988776655433         


Q ss_pred             ---------------cEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc
Q 018591          237 ---------------FVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI  299 (353)
Q Consensus       237 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  299 (353)
                                     .|.+||+.+++..   ......+...+  .++++++++++++  ++.|++||+.+++.   +..+
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~---~~~~  276 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS---IKRV  276 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE---EEEE
T ss_pred             cccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC---ccee
Confidence                           3688998887432   12222333334  4455568888888  79999999988763   3333


Q ss_pred             cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       300 ~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .. ...+.+++|+|+    +++|++++.|+.|++||+.+++.+....
T Consensus       277 ~~-~~~~~~~~~s~d----g~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          277 PL-PHSYYSVNVSTD----GSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EC-SSCCCEEEECTT----SCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             cC-CCceeeEEECCC----CCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            32 346789999999    9999989999999999999988766543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=5.4e-23  Score=185.88  Aligned_cols=274  Identities=10%  Similarity=0.009  Sum_probs=194.6

Q ss_pred             cCceEEEEEC--CcEEEEEeC-CC-----cEEEEeCCCceeeEEeccCc------------------------eeeEEEE
Q 018591           16 VGSVSSLALC--GEFILSASQ-GK-----DIIVWQQPDLRMFTKFGHGD------------------------GSVKAVV   63 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~-dg-----~v~vwd~~~~~~~~~~~~~~------------------------~~v~~~~   63 (353)
                      ...|.+++|+  |++|++++. |+     .|++||+.+++....+..+.                        ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            4579999996  899999998 88     99999999998877775543                        3478888


Q ss_pred             Ee--CCEEEEecCCCcEEEEEcccC---ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591           64 TV--GNKVFTAHQDSRIRVWKVSRS---SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN  138 (353)
Q Consensus        64 ~~--~~~l~s~~~dg~i~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  138 (353)
                      |+  +++|++++. +.|++||+.++   ..                                 ..+..|...+..++|+|
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---------------------------------~~l~~~~~~~~~~~~SP  161 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV---------------------------------RQLTHGEGFATDAKLSP  161 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSC---------------------------------CBCCCSSSCEEEEEECT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceE---------------------------------EEcccCCcccccccCCC
Confidence            88  788888876 89999999876   31                                 11125677899999999


Q ss_pred             --CeEEEecCCCcEEEEEcCCceeeeeccccCcc----------------eEEEEEeCC--eEEEEcCCC----------
Q 018591          139 --GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA----------------VNGLVASKG--IVYSASADG----------  188 (353)
Q Consensus       139 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------v~~i~~~~~--~l~~~~~dg----------  188 (353)
                        +.|+.++ ++.|++||+.+++.......+...                +.++.|+++  .|++++.|+          
T Consensus       162 DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~  240 (741)
T 2ecf_A          162 KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE  240 (741)
T ss_dssp             TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC
Confidence              6677766 569999999988776655444332                477889443  677776665          


Q ss_pred             -----------------------cEEEEeCCC-CCcccccceeeee--ccCCceeeEEEEcCCCCeEEeecC-----CCc
Q 018591          189 -----------------------KIKAWGKEL-GKSHCHSLKGILE--GHKDVSLNSVVVSDDGKWVYGGGS-----DGF  237 (353)
Q Consensus       189 -----------------------~i~iwd~~~-~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-----dg~  237 (353)
                                             .|.+||+.+ ++     ......  .+... +..++| |||++|++++.     +..
T Consensus       241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~-~~~~~~-pDg~~l~~~~~~~~~~~~~  313 (741)
T 2ecf_A          241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-----TQWIDLGKEQDIY-LARVNW-RDPQHLSFQRQSRDQKKLD  313 (741)
T ss_dssp             ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-----CEEECCCSCSSEE-EEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred             CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-----eEEecCCCCcceE-EEEEEe-CCCCEEEEEEecccCCeEE
Confidence                                   789999988 75     222222  23333 489999 99999987653     568


Q ss_pred             EEEeeccccccceeeeeecccc--ceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEE-EeecC
Q 018591          238 VMGWEGNVEIVRWKLACETKAH--EMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL-QASPN  314 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~  314 (353)
                      |++||+.++.............  ......++++|+++++++.||.++||.++....   ...+..|...|..+ .|+|+
T Consensus       314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~d  390 (741)
T 2ecf_A          314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK---AAALTHGNWSVDELLAVDEK  390 (741)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC---EEESCCSSSCEEEEEEEETT
T ss_pred             EEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC---eeeeeecceEEEeEeEEeCC
Confidence            9999998874322111111000  112345667788999999999888887763222   34456677888887 59999


Q ss_pred             CCCCCeEE-EEccCCC--eEEEEEcCC
Q 018591          315 AVGGGFLL-YSGSLDK--SLRVWWVSK  338 (353)
Q Consensus       315 ~~~~~~~l-~s~~~dg--~i~iw~~~~  338 (353)
                          ++.| ++++.|+  .+++|++..
T Consensus       391 ----g~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          391 ----AGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             ----TTEEEEEECSSCTTCBEEEEEET
T ss_pred             ----CCEEEEEEeCCCCceEEEEEEEc
Confidence                7655 5566565  899999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=7.7e-22  Score=162.52  Aligned_cols=273  Identities=11%  Similarity=0.068  Sum_probs=188.1

Q ss_pred             ccCceEEEEEC--CcEEEEEeC-------CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEE
Q 018591           15 HVGSVSSLALC--GEFILSASQ-------GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWK   82 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~-------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~   82 (353)
                      ....+..++|+  ++++++++.       ++.|.+||..+++.+..+... ..+..+.++  ++++ ++...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            34568889996  677777764       568999999999988888653 346677777  6644 5556679999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec--CCCcEEEEEcCCc
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS--WDKTLKVWRVADL  158 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~--~dg~v~iwd~~~~  158 (353)
                      .++++     .+..++.....                  ..-......+.++.+++  +.+++++  .++.|.+||..++
T Consensus       118 ~~~~~-----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A          118 AKTGE-----VKGRLVLDDRK------------------RTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             TTTCC-----EEEEEESCCCC------------------CCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred             CCCCe-----eEEEEecCCCc------------------cccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence            98876     22222110000                  00000112367899988  5566654  5789999999999


Q ss_pred             eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeec----cCCceeeEEEEcCCCCeEEee
Q 018591          159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEG----HKDVSLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~  232 (353)
                      +.+..+..+...+.++++++  +.+++++.++.|.+||..+++     ....+..    +...+ ..++|+|++++++++
T Consensus       175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-----ILSRKKLLDDGKEHFF-INISLDTARQRAFIT  248 (353)
T ss_dssp             EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-----EEEEEECCCSSSCCCE-EEEEEETTTTEEEEE
T ss_pred             ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-----EEEEEEcCCCCCCccc-ceEEECCCCCEEEEE
Confidence            99888875666688888843  478888889999999999886     4433332    23333 789999999977666


Q ss_pred             cC-CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE-EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591          233 GS-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC-SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       233 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~  310 (353)
                      +. ++.|.+||..+++..    ............+++++++++ +...++.|.+||..+++.   +..+.. ...+.+++
T Consensus       249 ~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~-~~~~~~~~  320 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNIL----AKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV---VKTFDT-PTHPNSLA  320 (353)
T ss_dssp             ESSSSEEEEEETTTCCEE----EEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE---EEEEEC-CSEEEEEE
T ss_pred             eCCCCEEEEEECCCCcEE----EEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE---EEEEec-CCCCCeEE
Confidence            54 589999999887432    222223334466777888555 455799999999998763   333333 34689999


Q ss_pred             eecCCCCCCeEEEEccCCC
Q 018591          311 ASPNAVGGGFLLYSGSLDK  329 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg  329 (353)
                      |+|+    +++|+.+..++
T Consensus       321 ~s~d----g~~l~v~~~~~  335 (353)
T 3vgz_A          321 LSAD----GKTLYVSVKQK  335 (353)
T ss_dssp             ECTT----SCEEEEEEECC
T ss_pred             EcCC----CCEEEEEEccc
Confidence            9999    88777666553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=5.9e-21  Score=156.88  Aligned_cols=269  Identities=12%  Similarity=0.170  Sum_probs=170.1

Q ss_pred             CCcEEEEeC--CCceeeE-EeccCceeeEEEEEe--CCEEEEecC---CCcEEEEEcccCccceeEEeeccccccceeee
Q 018591           35 GKDIIVWQQ--PDLRMFT-KFGHGDGSVKAVVTV--GNKVFTAHQ---DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK  106 (353)
Q Consensus        35 dg~v~vwd~--~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  106 (353)
                      ++.|.+|++  .+++... ....+......++|+  ++ |++++.   ++.|++|+++++...   .+..          
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---~~~~----------   80 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---KLNT----------   80 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---EEEE----------
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---Eeee----------
Confidence            456777765  4565443 223334566778887  45 666554   689999999765421   1111          


Q ss_pred             ecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC---ceeeeeccc---------cCcce
Q 018591          107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD---LKCLESIKA---------HDDAV  171 (353)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~---~~~~~~~~~---------~~~~v  171 (353)
                                       +..+...+..++|+|  ++|++++ .++.|.+|++..   .+.+..+..         +...+
T Consensus        81 -----------------~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~  143 (347)
T 3hfq_A           81 -----------------VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI  143 (347)
T ss_dssp             -----------------EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred             -----------------eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence                             114566778899998  6677766 789999999962   233333321         12347


Q ss_pred             EEEEEeC-C-eEEEEcCCCcEEEEeCC-CCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeeccccc
Q 018591          172 NGLVASK-G-IVYSASADGKIKAWGKE-LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNVEI  247 (353)
Q Consensus       172 ~~i~~~~-~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~  247 (353)
                      .++++++ + .+++...++.|.+||+. +++.   ................++|+|+|+++++ ...++.+.+|++....
T Consensus       144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~---~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  220 (347)
T 3hfq_A          144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL---SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT  220 (347)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEECTTSCE---EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eEEEECCCCcEEEEeCCCCEEEEEEECCCCcE---EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            8899933 3 56666678899999998 3431   1112222222222378999999996655 5678899999987522


Q ss_pred             cceeeeeeccccc------eeE--EEEEEcCcEE-EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCC
Q 018591          248 VRWKLACETKAHE------MAV--LCVCLVGEFL-CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGG  318 (353)
Q Consensus       248 ~~~~~~~~~~~~~------~~v--~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  318 (353)
                      .............      ..+  .+++++|++| ++...++.|.+|++........+..+..+...+..++|+|+    
T Consensus       221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spd----  296 (347)
T 3hfq_A          221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPT----  296 (347)
T ss_dssp             TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTT----
T ss_pred             CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCC----
Confidence            1222222211111      223  4455678877 55667899999999754344466666666777899999999    


Q ss_pred             CeEEEEccC-CCeEEEEEc--CCCCC
Q 018591          319 GFLLYSGSL-DKSLRVWWV--SKQSS  341 (353)
Q Consensus       319 ~~~l~s~~~-dg~i~iw~~--~~~~~  341 (353)
                      +++|++++. ++.|.+|++  ++++.
T Consensus       297 g~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          297 EAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            888877765 589999955  44443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.8e-22  Score=161.98  Aligned_cols=250  Identities=10%  Similarity=0.018  Sum_probs=172.4

Q ss_pred             EEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc-CccceeEEeeccccccceeeee
Q 018591           31 SASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR-SSENVFRLVDTLPTTKDYLGKF  107 (353)
Q Consensus        31 s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~  107 (353)
                      +++.|+.|++||+.+++... +..|...|.+++|+  +++|++++ ++.|++||+++ +...     ...          
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----~~~----------   79 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----KVD----------   79 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----ECC----------
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----Eec----------
Confidence            35678999999999988764 44468889999998  77888876 78999999987 5421     111          


Q ss_pred             cccceeEeecccceeeeeec-CCceEEEEEeC--CeEEEec--CCCcEEEE--EcCCceeeeeccccCcceEEEEEeCC-
Q 018591          108 MKQSNYVQTRRHHKRLWIEH-ADSISCLTVYN--GLIYSGS--WDKTLKVW--RVADLKCLESIKAHDDAVNGLVASKG-  179 (353)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~l~~~~--~dg~v~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~-  179 (353)
                                       ..+ ...+.++.|+|  ..+++++  .++...+|  +..+++ ...+..+ ..+..++|+++ 
T Consensus        80 -----------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg  140 (297)
T 2ojh_A           80 -----------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDG  140 (297)
T ss_dssp             -----------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTS
T ss_pred             -----------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCC
Confidence                             123 46788899998  6788877  33445555  444444 3444333 34888899433 


Q ss_pred             -eEE-EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeeccccccceeeeeec
Q 018591          180 -IVY-SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       180 -~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                       .++ ++..++.+++|+++....    ....+..+...+ ..++|+|++++++.++ .++.+++|++....   .....+
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~  212 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSG----VETRLTHGEGRN-DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERI  212 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTC----CEEECCCSSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEEC
T ss_pred             CEEEEEECCCCceEEEEEECCCC----cceEcccCCCcc-ccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEE
Confidence             454 788899999998643221    223444444444 9999999999887665 58999999986322   222334


Q ss_pred             cccceeEEEEEE--cCcEEEEecCC-----------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591          257 KAHEMAVLCVCL--VGEFLCSGSAD-----------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY  323 (353)
Q Consensus       257 ~~~~~~v~~~~~--~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~  323 (353)
                      ..+...+..+.+  ++++|++++.+           +.|++||+.+++. ..+..+.+|...+.+++|+|+    +++|+
T Consensus       213 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spd----g~~l~  287 (297)
T 2ojh_A          213 TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPD----GDEFA  287 (297)
T ss_dssp             CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTTTSCSCCBCTT----SSEEE
T ss_pred             ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCcccccceECCC----CCEEE
Confidence            445555655554  68888887765           5799999988653 244455578889999999999    88888


Q ss_pred             EccCCC
Q 018591          324 SGSLDK  329 (353)
Q Consensus       324 s~~~dg  329 (353)
                      +++.|.
T Consensus       288 ~~~~~~  293 (297)
T 2ojh_A          288 YVRYFP  293 (297)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            887654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=4.7e-21  Score=178.97  Aligned_cols=309  Identities=10%  Similarity=0.005  Sum_probs=190.9

Q ss_pred             eeeeeeCccCceEEEEEC--CcEEEEEeCC------CcEEEEeCCCceeeEEeccCceee-------EEEEEe--CCEEE
Q 018591            8 SLAVLSGHVGSVSSLALC--GEFILSASQG------KDIIVWQQPDLRMFTKFGHGDGSV-------KAVVTV--GNKVF   70 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~~l~s~~~d------g~v~vwd~~~~~~~~~~~~~~~~v-------~~~~~~--~~~l~   70 (353)
                      ....+.+|...+.+++|+  |++||+++.+      ..|++||+.+++ ...+..|...+       ..++|+  ++.++
T Consensus        44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~  122 (1045)
T 1k32_A           44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII  122 (1045)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence            356788999999999996  8999988653      479999998877 56778888888       899998  66677


Q ss_pred             EecCC------CcEEEEEcccCccceeEEeecccccc-----ceeeeec--------------ccce-eEeecccceeee
Q 018591           71 TAHQD------SRIRVWKVSRSSENVFRLVDTLPTTK-----DYLGKFM--------------KQSN-YVQTRRHHKRLW  124 (353)
Q Consensus        71 s~~~d------g~i~~w~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------------~~~~-~~~~~~~~~~~~  124 (353)
                      +++.+      ..|..|++.++.....   ...+...     ..+....              .... +..........+
T Consensus       123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l---~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l  199 (1045)
T 1k32_A          123 STDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI  199 (1045)
T ss_dssp             EECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred             EECCcCCCcccceEEEEECCCCCeEEe---cCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence            77654      3577777766542111   0000000     0000000              0000 000000111222


Q ss_pred             eecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC----------------------------------------ceeeee
Q 018591          125 IEHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD----------------------------------------LKCLES  163 (353)
Q Consensus       125 ~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~----------------------------------------~~~~~~  163 (353)
                      .+|...+.++.|++ ..+++++.|+.+.+|.+..                                        ...+..
T Consensus       200 ~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~  279 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK  279 (1045)
T ss_dssp             ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEE
T ss_pred             cCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeee
Confidence            34555555555555 2333444444445554321                                        111112


Q ss_pred             ccc-----------cCcceEEEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591          164 IKA-----------HDDAVNGLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       164 ~~~-----------~~~~v~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  229 (353)
                      +..           |...+.+++|+ ++  .+++++ ++.+.+|+...+.      ...+..+....+..++|+ +++.+
T Consensus       280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~s-dg~~l  351 (1045)
T 1k32_A          280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------VLKVPEPLRIRYVRRGGD-TKVAF  351 (1045)
T ss_dssp             CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred             eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc------eEEccCCCcceEEeeeEc-CCCeE
Confidence            222           22246666666 54  455444 6677777776554      222344444234889999 99999


Q ss_pred             EeecCCCcEE-EeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCe
Q 018591          230 YGGGSDGFVM-GWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPV  306 (353)
Q Consensus       230 ~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v  306 (353)
                      +.++.++.+. +|+...+.    .. .+..+...+..+  +++|++|++++.++.|++||+.+++   ......+|.+.+
T Consensus       352 ~~~s~~~~l~~~~d~~~~~----~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~---~~~~~~~~~~~v  423 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGK----AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK---PTVIERSREAMI  423 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCC----EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECSSSCC
T ss_pred             EEEECCCceEEEEECCCCC----ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc---eEEeccCCCCCc
Confidence            9888888888 88987762    11 122444445444  5569999999999999999999876   333445788999


Q ss_pred             EEEEeecCCCCCCeEEEEccCCC----------eEEEEEcCCCC
Q 018591          307 KCLQASPNAVGGGFLLYSGSLDK----------SLRVWWVSKQS  340 (353)
Q Consensus       307 ~~~~~~~~~~~~~~~l~s~~~dg----------~i~iw~~~~~~  340 (353)
                      .+++|+||    |++|++++.++          .|++||+.+++
T Consensus       424 ~~~~~SpD----G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          424 TDFTISDN----SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             CCEEECTT----SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             cceEECCC----CCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            99999999    99998887654          99999998875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=1.1e-21  Score=177.45  Aligned_cols=286  Identities=10%  Similarity=0.045  Sum_probs=188.7

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcccee
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      .|.+++|+  |++|++++. +.|++||+.+++  ....+..|...+..+.|+  |++|+.++. +.|++||+.++...  
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~--  185 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM--  185 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE--
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE--
Confidence            38899996  889999887 999999998873  344566677889999998  788888874 69999999876521  


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC---------------------
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK---------------------  148 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg---------------------  148 (353)
                         .........+.          . ....-+.......+..+.|+|  +.|++++.|+                     
T Consensus       186 ---~~~~~~~~~~~----------~-g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          186 ---QLTADGSTTIG----------N-GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             ---ECCCCCCSSEE----------E-SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             ---EeccCCcccee----------c-cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence               11100000000          0 000000000112356788998  6788777665                     


Q ss_pred             ------------cEEEEEcCC-ceeeeecc--ccCcceEEEEEeCC--eEEEEcC-----CCcEEEEeCCCCCcccccce
Q 018591          149 ------------TLKVWRVAD-LKCLESIK--AHDDAVNGLVASKG--IVYSASA-----DGKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       149 ------------~v~iwd~~~-~~~~~~~~--~~~~~v~~i~~~~~--~l~~~~~-----dg~i~iwd~~~~~~~~~~~~  206 (353)
                                  .|.+||+.+ ++......  .|...+..++| ++  .|+.++.     +..|++||+.+++     ..
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-----~~  325 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-----QR  325 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-----EE
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-----eE
Confidence                        789999988 77654432  46778899999 54  5665543     5679999999887     44


Q ss_pred             eeeeccCCc---eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE---EEEEcCcEEE-EecCC
Q 018591          207 GILEGHKDV---SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL---CVCLVGEFLC-SGSAD  279 (353)
Q Consensus       207 ~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~l~-~~~~d  279 (353)
                      ..+..+...   .+..++|+|||+++++++.+|.+++|.+....   . ...+..+...+.   .++++++.|+ +++.+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          326 VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---C-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC---C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence            444444332   23688999999999999999988888776321   1 233444444443   4566787664 55555


Q ss_pred             C--eEEEEecCC-CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC----CeEEEEEcCCC
Q 018591          280 K--SIGIWKREA-FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD----KSLRVWWVSKQ  339 (353)
Q Consensus       280 g--~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~  339 (353)
                      +  .+++|++.. ++.   ...+.. ...+.+++|+|+    +++|+....+    +.+.+|+....
T Consensus       402 ~~~~~~l~~~~~~g~~---~~~l~~-~~~~~~~~~spd----g~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          402 SARESQIYAVPLQGGQ---PQRLSK-APGMHSASFARN----ASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             CTTCBEEEEEETTCCC---CEECCC-SCSEEEEEECTT----SSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCceEEEEEEEcCCCC---eeeccc-CCCceEEEECCC----CCEEEEEecCCCCCCeEEEEEcCCC
Confidence            5  899999864 332   233333 566889999999    8877766443    57889987543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.6e-21  Score=175.29  Aligned_cols=287  Identities=11%  Similarity=0.071  Sum_probs=187.4

Q ss_pred             CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc-----Ccc
Q 018591           17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR-----SSE   88 (353)
Q Consensus        17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~-----~~~   88 (353)
                      ..|.+++|+ .+.++.+ .|+.|++||+.+++..... .+...+..++|+  ++.|+.+ .++.|++|++.+     ++.
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence            569999997 3455444 4599999999988766544 345678888887  7788885 679999999987     542


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec---------------------
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS---------------------  145 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~---------------------  145 (353)
                      ...     .......+          .... .  +...+...+.++.|+|  +.|++++                     
T Consensus       159 ~~~-----~~~~~~~~----------~~g~-~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          159 IAV-----TIDGTETL----------VYGQ-A--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             EES-----CSCCBTTE----------EESS-C--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             EEe-----ccCCCCCe----------Eccc-c--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            110     00000000          0000 0  1112334467889998  6777776                     


Q ss_pred             ------------CCCcEEEEEcCCceeeeecc--ccCcceEEEEEeCC--eEEEEcCCC-----cEEEEeCCCCCccccc
Q 018591          146 ------------WDKTLKVWRVADLKCLESIK--AHDDAVNGLVASKG--IVYSASADG-----KIKAWGKELGKSHCHS  204 (353)
Q Consensus       146 ------------~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~--~l~~~~~dg-----~i~iwd~~~~~~~~~~  204 (353)
                                  .+..|++||+.+++......  .|...+.+++|+++  .+++++.++     .|++||+.+++.    
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~----  296 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF----  296 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE----
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce----
Confidence                        44679999999887655442  46678999999443  677777665     899999998731    


Q ss_pred             ceeeeeccCCc---eeeEEEEcC--CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE---EEEEEcCcEEEE-
Q 018591          205 LKGILEGHKDV---SLNSVVVSD--DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV---LCVCLVGEFLCS-  275 (353)
Q Consensus       205 ~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~-  275 (353)
                      ...........   .+..++|+|  +|++++++..++.+++|.+....   .....+..+...+   ..++++++.|+. 
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~  373 (706)
T 2z3z_A          297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFE  373 (706)
T ss_dssp             EEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEE
T ss_pred             eeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEE
Confidence            22222111111   136789999  99999999999999999886221   2233334444444   345556776654 


Q ss_pred             ecCCC----eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC----CeEEEEEcCCCC
Q 018591          276 GSADK----SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD----KSLRVWWVSKQS  340 (353)
Q Consensus       276 ~~~dg----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~~~  340 (353)
                      +..++    .|+.||..+++ ...   + .|...+.+++|+|+    +++++....+    +.|.+||+.+++
T Consensus       374 ~~~~~~~~~~l~~~d~~~~~-~~~---l-~~~~~~~~~~~spd----g~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          374 STEASPLERHFYCIDIKGGK-TKD---L-TPESGMHRTQLSPD----GSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ESSSCTTCBEEEEEETTCCC-CEE---S-CCSSSEEEEEECTT----SSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ecCCCCceEEEEEEEcCCCC-cee---c-cCCCceEEEEECCC----CCEEEEEecCCCCCcEEEEEECCCCe
Confidence            44444    67777777654 222   2 25677999999999    8887766443    569999998775

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=7.3e-22  Score=177.52  Aligned_cols=272  Identities=12%  Similarity=0.082  Sum_probs=179.4

Q ss_pred             eEEEEECCcEEEEEeCCCcEEEEeCCCcee--eEEeccCc----------------eeeEEEEEe-CCEEEEecCCCcEE
Q 018591           19 VSSLALCGEFILSASQGKDIIVWQQPDLRM--FTKFGHGD----------------GSVKAVVTV-GNKVFTAHQDSRIR   79 (353)
Q Consensus        19 v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~----------------~~v~~~~~~-~~~l~s~~~dg~i~   79 (353)
                      +..+.|.|+.+++++.|+ | +||+.+++.  ...+..+.                ..|.+++|+ .+.++.+ .++.|+
T Consensus        28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~  104 (706)
T 2z3z_A           28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLV  104 (706)
T ss_dssp             CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEE
T ss_pred             CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEE
Confidence            444556577788888888 8 999999987  33333221                468999998 4444444 459999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      +||+.+++..                                 .+..+...+.+++|+|  +.|++ ..++.|++||+.+
T Consensus       105 ~~d~~~~~~~---------------------------------~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~  150 (706)
T 2z3z_A          105 GFDMLARKVT---------------------------------YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGK  150 (706)
T ss_dssp             EEETTTTEEE---------------------------------EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBC
T ss_pred             EEECCCCceE---------------------------------EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCc
Confidence            9999876411                                 1113556677889999  56766 4789999999988


Q ss_pred             -----ceeeeeccccCcc--------------eEEEEEeCC--eEEEEc-------------------------------
Q 018591          158 -----LKCLESIKAHDDA--------------VNGLVASKG--IVYSAS-------------------------------  185 (353)
Q Consensus       158 -----~~~~~~~~~~~~~--------------v~~i~~~~~--~l~~~~-------------------------------  185 (353)
                           ++.......+...              +.++.|+++  .|++++                               
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 7766554443332              478899443  677776                               


Q ss_pred             --CCCcEEEEeCCCCCcccccceeeee--ccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeeec
Q 018591          186 --ADGKIKAWGKELGKSHCHSLKGILE--GHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       186 --~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~  256 (353)
                        .+..|++||+.+++     ......  .+... +..++|+|||++|++++.++     .|.+||+.++..........
T Consensus       231 ~~~~~~l~~~d~~~~~-----~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~  304 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGK-----TVYLQTGEPKEKF-LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET  304 (706)
T ss_dssp             CCCEEEEEEEETTTTE-----EEECCCCSCTTCE-EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             CCCeeEEEEEECCCCc-----eEeeccCCCCcee-EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence              44679999998876     222222  23333 48999999999999877665     89999998862111111111


Q ss_pred             cc-cc--eeEEEEEE--cCcEEEEecCCCeEEEEecC-CCcceEEeccccCCCcCeEE-EEeecCCCCCCeEEEE-ccCC
Q 018591          257 KA-HE--MAVLCVCL--VGEFLCSGSADKSIGIWKRE-AFGKLCRVGAITGHEGPVKC-LQASPNAVGGGFLLYS-GSLD  328 (353)
Q Consensus       257 ~~-~~--~~v~~~~~--~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~l~s-~~~d  328 (353)
                      .. ..  .....+++  +|++++++..|+.+++|+++ +++   .+..+..|...+.. ++|+|+    ++.|+. ++.+
T Consensus       305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~---~~~~l~~~~~~v~~~~~~spd----g~~l~~~~~~~  377 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR---LIRQVTKGEWEVTNFAGFDPK----GTRLYFESTEA  377 (706)
T ss_dssp             CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC---EEEECCCSSSCEEEEEEECTT----SSEEEEEESSS
T ss_pred             CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC---EEEecCCCCeEEEeeeEEcCC----CCEEEEEecCC
Confidence            10 00  12246777  88999999999999999886 444   44556677777877 799999    766654 4455


Q ss_pred             C----eEEEEEcCCCC
Q 018591          329 K----SLRVWWVSKQS  340 (353)
Q Consensus       329 g----~i~iw~~~~~~  340 (353)
                      +    .|..|++.+++
T Consensus       378 ~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          378 SPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CTTCBEEEEEETTCCC
T ss_pred             CCceEEEEEEEcCCCC
Confidence            4    67777776654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=2.5e-21  Score=180.76  Aligned_cols=285  Identities=11%  Similarity=0.007  Sum_probs=203.7

Q ss_pred             eeeeeCccCceEEEEECC-cEEEEEeCCCcEEEEeCCC-ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591            9 LAVLSGHVGSVSSLALCG-EFILSASQGKDIIVWQQPD-LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~~-~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~   84 (353)
                      ...+.+|...+.++.|++ .++++++.|+.+++|.+.. +.....+..|. .+...+|+  ++.|+.+ .++.|.+|++.
T Consensus       196 ~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~  273 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD  273 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             eEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence            455689999999999984 4566778889999998643 44455555554 34445565  7778877 48899999984


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe-C--CeEEEecCCCcEEEEEcCCceee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY-N--GLIYSGSWDKTLKVWRVADLKCL  161 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--~~l~~~~~dg~v~iwd~~~~~~~  161 (353)
                      ...     .. .+....                ......+..|...+.+++|+ |  ..+++++ ++.|.+|+...++..
T Consensus       274 ~~~-----l~-~l~~~~----------------~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~  330 (1045)
T 1k32_A          274 TEK-----IE-KIEIGD----------------LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL  330 (1045)
T ss_dssp             TCC-----EE-ECCCCC----------------CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred             ceE-----ee-eeccCc----------------ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence            332     11 111100                00011122466788999999 8  5677766 789999999877654


Q ss_pred             eeccccCc-ceEEEEEeCC-eEEEEcCCCcEE-EEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcE
Q 018591          162 ESIKAHDD-AVNGLVASKG-IVYSASADGKIK-AWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFV  238 (353)
Q Consensus       162 ~~~~~~~~-~v~~i~~~~~-~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  238 (353)
                      . +..|.. .+..++|+++ .++.++.++.+. +||+..++     .. .+..+...+ ..++|+|+|++|++++.++.|
T Consensus       331 ~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~-----~~-~l~~~~~~~-~~~~~SpDG~~la~~~~~~~v  402 (1045)
T 1k32_A          331 K-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-----AE-KFEENLGNV-FAMGVDRNGKFAVVANDRFEI  402 (1045)
T ss_dssp             E-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-----EE-ECCCCCCSE-EEEEECTTSSEEEEEETTSEE
T ss_pred             E-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCC-----ce-EecCCccce-eeeEECCCCCEEEEECCCCeE
Confidence            4 556666 8889999722 677777788888 89988765     22 233554444 899999999999999999999


Q ss_pred             EEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCC----------CeEEEEecCCCcceEEeccccCCCcCe
Q 018591          239 MGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSAD----------KSIGIWKREAFGKLCRVGAITGHEGPV  306 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~h~~~v  306 (353)
                      ++||+.++.    .......|...+  .+++++|++|++++.+          +.|++||+.+++    +..+..|...+
T Consensus       403 ~~~d~~tg~----~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~----~~~l~~~~~~~  474 (1045)
T 1k32_A          403 MTVDLETGK----PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAATTENSHD  474 (1045)
T ss_dssp             EEEETTTCC----EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEECSCSSSBE
T ss_pred             EEEECCCCc----eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc----EEEeeCCCccc
Confidence            999998873    333333455444  4555678988887764          499999998764    34566788889


Q ss_pred             EEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          307 KCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .+++|+|+    |++|++++.++...+|+...
T Consensus       475 ~~~~~spd----G~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          475 YAPAFDAD----SKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EEEEECTT----SCEEEEEESCCCCCEECSSS
T ss_pred             CCceEcCC----CCEEEEEecccCCcCcchhc
Confidence            99999999    99999999988888887653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=2.8e-22  Score=180.76  Aligned_cols=281  Identities=9%  Similarity=-0.035  Sum_probs=185.5

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce---eeEEEEEe--CCEEEEecCC---------CcEEEE
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG---SVKAVVTV--GNKVFTAHQD---------SRIRVW   81 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~--~~~l~s~~~d---------g~i~~w   81 (353)
                      .+.+++|+  |+++++ +.||+|++||+.+++....+.+|..   .|.+++|+  +++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            46788886  776665 7899999999999998888877765   48899998  8889988764         788899


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      |+++++.   ..+...                           .+|...+..++|+|  +.|+.++. +.|++||+.+++
T Consensus        97 d~~~~~~---~~l~~~---------------------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~  145 (723)
T 1xfd_A           97 KIPHGDP---QSLDPP---------------------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ  145 (723)
T ss_dssp             ESSSCCC---EECCCT---------------------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC
T ss_pred             ECCCCce---EeccCC---------------------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc
Confidence            9988762   111111                           04555688899999  67777775 799999998887


Q ss_pred             eeeeccccCcce------------------EEEEEeCC--eEEEEcCCC-------------------------------
Q 018591          160 CLESIKAHDDAV------------------NGLVASKG--IVYSASADG-------------------------------  188 (353)
Q Consensus       160 ~~~~~~~~~~~v------------------~~i~~~~~--~l~~~~~dg-------------------------------  188 (353)
                      .......+...+                  .+++|+++  .|++++.++                               
T Consensus       146 ~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  225 (723)
T 1xfd_A          146 AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (723)
T ss_dssp             CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence            766554433333                  78999443  677776543                               


Q ss_pred             ---cEEEEeCCCCCcccccceeeeecc-----CCceeeEEEEcCCCCeEEeecC----CCcEEEeeccccccceeeeeec
Q 018591          189 ---KIKAWGKELGKSHCHSLKGILEGH-----KDVSLNSVVVSDDGKWVYGGGS----DGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       189 ---~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                         .|++||+.+++     ....+..+     ....+..++|+|||+++++...    +..|++||+.++..........
T Consensus       226 ~~~~l~~~d~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  300 (723)
T 1xfd_A          226 PSISLHVIGLNGPT-----HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (723)
T ss_dssp             CEEEEEEEESSSSC-----CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CeeEEEEEECCCCc-----eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence               79999998776     22333332     1334589999999998876543    3579999998874221111110


Q ss_pred             cccce---eEEEEEEcCcEEEE--ecCCC------eEEEEecCCCcceEEeccccCCCcCeEE-EEeecCCCCCCeEEEE
Q 018591          257 KAHEM---AVLCVCLVGEFLCS--GSADK------SIGIWKREAFGKLCRVGAITGHEGPVKC-LQASPNAVGGGFLLYS  324 (353)
Q Consensus       257 ~~~~~---~v~~~~~~~~~l~~--~~~dg------~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~l~s  324 (353)
                      .....   ....++++|+.|+.  +..++      .|++||...+........+..+...+.. ++|+|+    ++.|+.
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spd----g~~l~~  376 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEK----GNKIYF  376 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETT----TTEEEE
T ss_pred             CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCC----CCEEEE
Confidence            01000   13466778886664  45667      5667773233320002334433344554 699999    888875


Q ss_pred             ccCC---CeEEEEEcCCC
Q 018591          325 GSLD---KSLRVWWVSKQ  339 (353)
Q Consensus       325 ~~~d---g~i~iw~~~~~  339 (353)
                      .+.+   +.+++|++...
T Consensus       377 ~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          377 LSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EESSSCTTCCEEEEECSS
T ss_pred             EEcCCCCcceEEEEEeCC
Confidence            5544   78999998653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=8.6e-22  Score=173.05  Aligned_cols=274  Identities=11%  Similarity=0.035  Sum_probs=184.8

Q ss_pred             CceeeeeeC-ccCceEEEEEC--CcEEEEEeC-CCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecC---CCc
Q 018591            6 HRSLAVLSG-HVGSVSSLALC--GEFILSASQ-GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQ---DSR   77 (353)
Q Consensus         6 ~~~~~~l~~-h~~~v~~~~~~--~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~---dg~   77 (353)
                      .+.++.++. +..+|++++|+  |++||+++. ||+++||++.+++..+...++...+..+.|+ ++.+++++.   +..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~   89 (582)
T 3o4h_A           10 SRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQ   89 (582)
T ss_dssp             HHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCC
T ss_pred             HHHHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcc
Confidence            344444543 36689999985  899999887 9999999997776655444444689999998 434555554   456


Q ss_pred             EEEEEccc--CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEE
Q 018591           78 IRVWKVSR--SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWR  154 (353)
Q Consensus        78 i~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd  154 (353)
                      .++|.++.  .....  .+..                             .+...+.++++++ ..+++.+.++.+.+||
T Consensus        90 ~~l~~~~~~~~g~~~--~l~~-----------------------------~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d  138 (582)
T 3o4h_A           90 HALFKVNTSRPGEEQ--RLEA-----------------------------VKPMRILSGVDTGEAVVFTGATEDRVALYA  138 (582)
T ss_dssp             EEEEEEETTSTTCCE--ECTT-----------------------------SCSBEEEEEEECSSCEEEEEECSSCEEEEE
T ss_pred             eEEEEEeccCCCccc--cccC-----------------------------CCCceeeeeCCCCCeEEEEecCCCCceEEE
Confidence            67777655  22111  1110                             1111234455555 4455555555666999


Q ss_pred             cCCceeeeeccccCcceEEEEE--eCCeEEEEcCC----CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCe
Q 018591          155 VADLKCLESIKAHDDAVNGLVA--SKGIVYSASAD----GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       155 ~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                      +.+++.......+.   .+++|  .+..+++++.+    +.|++||+.+++     . ..+..+.... ..++|+|||+.
T Consensus       139 ~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-----~-~~l~~~~~~~-~~~~~SpDG~~  208 (582)
T 3o4h_A          139 LDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-----L-RVFDSGEGSF-SSASISPGMKV  208 (582)
T ss_dssp             EETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-----C-EEECCSSCEE-EEEEECTTSCE
T ss_pred             ccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-----c-eEeecCCCcc-ccceECCCCCE
Confidence            98887665554333   67777  33377777766    789999998876     2 3455665554 99999999999


Q ss_pred             EEeecCCC--cEEEeeccccccceeeeeeccccceeE----------EEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          229 VYGGGSDG--FVMGWEGNVEIVRWKLACETKAHEMAV----------LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       229 l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v----------~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      |+++..++  .|++||+.++...     .+..+...+          .+++++|.++++++.++.+++|++  ++   ..
T Consensus       209 l~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~---~~  278 (582)
T 3o4h_A          209 TAGLETAREARLVTVDPRDGSVE-----DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE---RV  278 (582)
T ss_dssp             EEEEECSSCEEEEEECTTTCCEE-----ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE---EE
T ss_pred             EEEccCCCeeEEEEEcCCCCcEE-----EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC---ee
Confidence            99888888  8999999887432     223332222          226778988999999999999999  44   22


Q ss_pred             ccccCCCcCeEEEEeecCCCCCCeEEEEccCCC---eEEEEEcCC
Q 018591          297 GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK---SLRVWWVSK  338 (353)
Q Consensus       297 ~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg---~i~iw~~~~  338 (353)
                      .   .+.+.+.+++|+ +    ++++++++.+.   .+.+|+...
T Consensus       279 ~---~~~~~v~~~~~s-d----g~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          279 E---APQGNHGRVVLW-R----GKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             C---CCSSEEEEEEEE-T----TEEEEEEEETTEEEEEEEETTCC
T ss_pred             c---cCCCceEEEEec-C----CEEEEEEcCCCCCCeEEEEcCCC
Confidence            2   234678999999 8    89999888774   466666543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.8e-20  Score=157.82  Aligned_cols=203  Identities=11%  Similarity=0.036  Sum_probs=143.0

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCc----------eeeEE-----eccCceeeEEEEEe--CCEEE----Ee
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDL----------RMFTK-----FGHGDGSVKAVVTV--GNKVF----TA   72 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~----------~~~~~-----~~~~~~~v~~~~~~--~~~l~----s~   72 (353)
                      ...++.++++  +.++++++.|+ +++|+....          ..+..     ...+...|.+++|+  +++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            3468888885  78999999888 899874311          01111     11245679999998  78888    88


Q ss_pred             cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCc
Q 018591           73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKT  149 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~  149 (353)
                      +.|+.|++||+++...........                     ......+.+|...|.+++|+|   .+|++++.||.
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRP---------------------FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCC---------------------SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCCceEEEEEccccccCCcCCcce---------------------eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            999999999997641000000000                     001122337999999999998   58999999999


Q ss_pred             EEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC------CceeeEEE
Q 018591          150 LKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK------DVSLNSVV  221 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~  221 (353)
                      |++||++++..+....+|...|.+++|++  .+|++|+.||.|++||.+ ++     ....+..+.      ...+.+++
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-----~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-----EKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-----EEEEECCCTTCCTTSCEEEEEEE
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-----ccccccCCcccCCCCceeEEEEE
Confidence            99999999877766777899999999943  399999999999999998 33     222222221      12458999


Q ss_pred             EcCCCCeEEe-ecCCC------cEEEeecccc
Q 018591          222 VSDDGKWVYG-GGSDG------FVMGWEGNVE  246 (353)
Q Consensus       222 ~~~~~~~l~~-~~~dg------~i~i~d~~~~  246 (353)
                      |++++.++++ ...+|      .+++|++...
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9998877754 33343      3889999865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=1.1e-19  Score=148.30  Aligned_cols=250  Identities=9%  Similarity=0.085  Sum_probs=166.7

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeC-CCcEEEEeCCCcee-eEEeccCceeeEEEEEe--CCEEEEecCCC
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQ-GKDIIVWQQPDLRM-FTKFGHGDGSVKAVVTV--GNKVFTAHQDS   76 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~-dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s~~~dg   76 (353)
                      ..+++.+..+..+...+ +++|+  ++++++++. ++.|.+||+.+++. ...+..+..+..+++++  +++++++..++
T Consensus        27 ~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  105 (331)
T 3u4y_A           27 TDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLN  105 (331)
T ss_dssp             TTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSS
T ss_pred             CcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCC
Confidence            46778888888777777 99996  776666555 89999999999988 77777776666658887  77888655553


Q ss_pred             ---cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCc-
Q 018591           77 ---RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKT-  149 (353)
Q Consensus        77 ---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~-  149 (353)
                         .|.+||+++++     .+..+                            .......+++|+|  ++++ +...++. 
T Consensus       106 ~~~~i~v~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A          106 HPFNMQSYSFLKNK-----FISTI----------------------------PIPYDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             SSCEEEEEETTTTE-----EEEEE----------------------------ECCTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             CcccEEEEECCCCC-----eEEEE----------------------------ECCCCccceEECCCCCEEEEEecCCCce
Confidence               89999998765     22211                            2334557999999  4454 4455688 


Q ss_pred             EEEEEcCCceee----eeccccCcceEEEEEeC-C--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE
Q 018591          150 LKVWRVADLKCL----ESIKAHDDAVNGLVASK-G--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       150 v~iwd~~~~~~~----~~~~~~~~~v~~i~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (353)
                      |.+|++.....+    ............++|++ +  .++++..++.|.+||+.+++.  ......+... ..+ ..++|
T Consensus       153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~~~-~~~-~~~~~  228 (331)
T 3u4y_A          153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVGTN-NLP-GTIVV  228 (331)
T ss_dssp             EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEECS-SCC-CCEEE
T ss_pred             EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeeccCC-CCC-ceEEE
Confidence            999998753322    11113345678899943 3  345556789999999988761  0004444433 333 88999


Q ss_pred             cCCCCeEEeec-CCCcEEEeeccccccce--eeeeecc--ccce---eEEEEEEcCcEEEE-ecCCCeEEEEecCCC
Q 018591          223 SDDGKWVYGGG-SDGFVMGWEGNVEIVRW--KLACETK--AHEM---AVLCVCLVGEFLCS-GSADKSIGIWKREAF  290 (353)
Q Consensus       223 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--~~~~~~~--~~~~---~v~~~~~~~~~l~~-~~~dg~i~iw~~~~~  290 (353)
                      +|++++++++. .++.|.+||..+++...  .......  ....   ...++++++++|++ +..++.|.+||+...
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            99999776554 57889999998874311  1111110  1111   12577778887755 555779999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=1.7e-19  Score=147.84  Aligned_cols=268  Identities=10%  Similarity=0.150  Sum_probs=168.5

Q ss_pred             CccCceEEEEEC--CcEEEEEeCC-CcEEEEeCC--Cce--eeEEeccCceeeEEEEEe--CCEEEEec-CCCcEEEEEc
Q 018591           14 GHVGSVSSLALC--GEFILSASQG-KDIIVWQQP--DLR--MFTKFGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWKV   83 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~d-g~v~vwd~~--~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~~   83 (353)
                      .|...+.+++|+  +++|++++.+ +.|++|++.  +++  .+..+..+. .+..++|+  ++++++++ .++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            477789999996  8888888876 999999987  444  344555444 77888887  66676555 5889999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCC-ce
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVAD-LK  159 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~-~~  159 (353)
                      +.+.  .......+                            .....+.+++|+|  +.+++++ .++.|.+||+.+ ++
T Consensus       114 ~~~~--~~~~~~~~----------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A          114 EDGL--PVGVVDVV----------------------------EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             ETTE--EEEEEEEE----------------------------CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCCc--cccccccc----------------------------cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            6222  11111111                            2233577889998  5666666 899999999987 54


Q ss_pred             eee----eccc-cCcceEEEEEeC-C-eE-EEEcCCCcEEEEeCCC--CCcccccceeeeecc-C-CceeeEEEEcCCCC
Q 018591          160 CLE----SIKA-HDDAVNGLVASK-G-IV-YSASADGKIKAWGKEL--GKSHCHSLKGILEGH-K-DVSLNSVVVSDDGK  227 (353)
Q Consensus       160 ~~~----~~~~-~~~~v~~i~~~~-~-~l-~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~  227 (353)
                      ...    .+.. ....+.+++|++ + .+ +++..++.|.+||+..  ++.........+... . ...+..++|+|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  243 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  243 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence            432    2222 245778899943 3 45 4555889999999964  321101111111111 1 11236899999998


Q ss_pred             eEE-eecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEEcCcEEEEec-CCCeEEEEecC--CCcceEEeccccCC
Q 018591          228 WVY-GGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCLVGEFLCSGS-ADKSIGIWKRE--AFGKLCRVGAITGH  302 (353)
Q Consensus       228 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~~~~~h  302 (353)
                      +++ +...++.|.+||+.......+.......+. ....++++++++|++++ .++.|.+|+++  +++ ...+..+.. 
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~-~~~~~~~~~-  321 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL-LHEKGRYAV-  321 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE-EEEEEEEEC-
T ss_pred             EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce-eeEcccccc-
Confidence            877 555789999999983211223333332222 22345555688777777 68999999654  432 334444443 


Q ss_pred             CcCeEEEEeecC
Q 018591          303 EGPVKCLQASPN  314 (353)
Q Consensus       303 ~~~v~~~~~~~~  314 (353)
                      .....+++|.|+
T Consensus       322 g~~p~~i~~~~~  333 (343)
T 1ri6_A          322 GQGPMWVVVNAH  333 (343)
T ss_dssp             SSSCCEEEEEEE
T ss_pred             CCCCeeEEEEcc
Confidence            245678888886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=3.5e-20  Score=155.98  Aligned_cols=223  Identities=14%  Similarity=0.122  Sum_probs=148.3

Q ss_pred             CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591           36 KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY  113 (353)
Q Consensus        36 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (353)
                      +.+++|+... .    +  +...+..++++  +.++++++.++ +++|+.......     ...........        
T Consensus        23 ~~vri~~~~~-~----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~-----~~~~~~~~~~~--------   81 (434)
T 2oit_A           23 KKVRIFDSPE-E----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ-----NKPGDDPNKIV--------   81 (434)
T ss_dssp             CEEECSCCCS-S----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC-----CCTTCCTTCEE--------
T ss_pred             eeEEecCCcc-c----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh-----cccccCccccc--------
Confidence            5788887532 1    1  23346667776  78899998887 999987542100     00000000000        


Q ss_pred             EeecccceeeeeecCCceEEEEEeC--CeEE----EecCCCcEEEEEcCCc--------e---eeeeccccCcceEEEEE
Q 018591          114 VQTRRHHKRLWIEHADSISCLTVYN--GLIY----SGSWDKTLKVWRVADL--------K---CLESIKAHDDAVNGLVA  176 (353)
Q Consensus       114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~----~~~~dg~v~iwd~~~~--------~---~~~~~~~~~~~v~~i~~  176 (353)
                       .   ........+...|.+++|++  ++|+    +|+.|+.|++||++++        +   .+..+.+|...|.+++|
T Consensus        82 -~---~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  157 (434)
T 2oit_A           82 -D---KVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKW  157 (434)
T ss_dssp             -E---CCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEE
T ss_pred             -c---cCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEE
Confidence             0   00001124677899999999  7788    7899999999998765        1   24566779999999999


Q ss_pred             eC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee
Q 018591          177 SK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA  253 (353)
Q Consensus       177 ~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  253 (353)
                      ++   ..+++++.||+|++||++++.     .......|...+ .+++|+|+|++|++|+.||.|++||.+ +.......
T Consensus       158 ~p~~~~~las~s~Dg~v~iwD~~~~~-----~~~~~~~~~~~v-~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~  230 (434)
T 2oit_A          158 NPTVPSMVAVCLADGSIAVLQVTETV-----KVCATLPSTVAV-TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP  230 (434)
T ss_dssp             CSSCTTEEEEEETTSCEEEEEESSSE-----EEEEEECGGGCE-EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred             CCCCCCEEEEEECCCeEEEEEcCCCc-----ceeeccCCCCce-eEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence            43   489999999999999999875     334445565555 999999999999999999999999998 32111111


Q ss_pred             eecc---ccceeEEEEEEc--CcEEEE-ecCCC------eEEEEecCCC
Q 018591          254 CETK---AHEMAVLCVCLV--GEFLCS-GSADK------SIGIWKREAF  290 (353)
Q Consensus       254 ~~~~---~~~~~v~~~~~~--~~~l~~-~~~dg------~i~iw~~~~~  290 (353)
                      ....   .|...+.++.|+  +.++++ ...+|      .+++|++...
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            1111   234578888886  344433 33443      3899999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=3.5e-20  Score=152.33  Aligned_cols=266  Identities=12%  Similarity=0.035  Sum_probs=171.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCc-eeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGD-GSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      +.++++++.++.|++||..+++.+..+..+. ..+..++++  ++++ ++...++.|.+||+.+++.     ...+....
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-----~~~~~~~~   85 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-----TFHANLSS   85 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEESCC
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-----EEEEEccc
Confidence            7789999999999999999999988886543 246778887  5555 4566789999999987652     11111000


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC------------CcEEEEEcCCceee---eec
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD------------KTLKVWRVADLKCL---ESI  164 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d------------g~v~iwd~~~~~~~---~~~  164 (353)
                      .                 .    ......+..++|+|  +++++++.+            +.|.+||+.+++..   ..+
T Consensus        86 ~-----------------~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           86 V-----------------P----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             S-----------------T----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             c-----------------c----ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence            0                 0    00022356788988  678887755            89999999885433   333


Q ss_pred             cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC--------------------c---eeeEE
Q 018591          165 KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD--------------------V---SLNSV  220 (353)
Q Consensus       165 ~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------~---~v~~~  220 (353)
                      . +...+.++++ +++.+++++  +.|.+||..+++     ....+.....                    .   ....+
T Consensus       145 ~-~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          145 P-MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGK-----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             E-CCSSCCCEEECTTSCEEEES--SSEEEECTTTCC-----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             c-CCCcccceeECCCCcEEEcc--CcEEEEeCCCCc-----eeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence            3 3446888889 444555554  349999998876     3333322210                    0   12456


Q ss_pred             EEcCCCC-----------eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE-cCcEEEEecCCCeEEEEecC
Q 018591          221 VVSDDGK-----------WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       221 ~~~~~~~-----------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~  288 (353)
                      ++++++.           ++.....++.+.+|++..           ........++++ ++++++++  ++.|++||+.
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~  283 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLK  283 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETT
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEeccccc-----------CCCcceeeEecCCCCCEEEEE--cCeEEEEECc
Confidence            6665542           112333344455554421           122233456677 88888888  8899999999


Q ss_pred             CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +++.   +..+. ....+.+++|+|+    +++|++++.++.|++||+++++.+...+
T Consensus       284 ~~~~---~~~~~-~~~~~~~~~~s~d----g~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          284 QRKL---IKAAN-LDHTYYCVAFDKK----GDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             TTEE---EEEEE-CSSCCCEEEECSS----SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             cCeE---EEEEc-CCCCccceEECCC----CCEEEEecCCCeEEEEeccccceeeeee
Confidence            8763   33333 2345789999999    8888888889999999999887766543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=3.6e-20  Score=167.03  Aligned_cols=286  Identities=8%  Similarity=-0.014  Sum_probs=180.3

Q ss_pred             CCCCceeeeeeCccC---ceEEEEEC--CcEEEEEeCC---------CcEEEEeCCCceeeEEec---cCceeeEEEEEe
Q 018591            3 CKSHRSLAVLSGHVG---SVSSLALC--GEFILSASQG---------KDIIVWQQPDLRMFTKFG---HGDGSVKAVVTV   65 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~---~v~~~~~~--~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~   65 (353)
                      ..+++....+.+|..   .|.+++|+  |++|++++.+         +.+++||+.+++. ..+.   .|...+..++|+
T Consensus        44 ~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~S  122 (723)
T 1xfd_A           44 VETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWG  122 (723)
T ss_dssp             GGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBC
T ss_pred             CCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEEC
Confidence            456677777877775   49999996  8899999875         7888999998876 3333   344457888887


Q ss_pred             --CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC---------CceEEE
Q 018591           66 --GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA---------DSISCL  134 (353)
Q Consensus        66 --~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~  134 (353)
                        |+.|+.++. +.|++||+.++......   .....                    ..++.++.         ..+.++
T Consensus       123 PdG~~la~~~~-~~i~~~~~~~g~~~~~~---~~~~~--------------------~~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          123 PKGQQLIFIFE-NNIYYCAHVGKQAIRVV---STGKE--------------------GVIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             SSTTCEEEEET-TEEEEESSSSSCCEEEE---CCCBT--------------------TTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCCCEEEEEEC-CeEEEEECCCCceEEEe---cCCCC--------------------CceECcccceeEEEEeccCcceE
Confidence              788888876 79999999876532111   00000                    00001111         133678


Q ss_pred             EEeC--CeEEEecCCC----------------------------------cEEEEEcCCceeeeecccc------CcceE
Q 018591          135 TVYN--GLIYSGSWDK----------------------------------TLKVWRVADLKCLESIKAH------DDAVN  172 (353)
Q Consensus       135 ~~~~--~~l~~~~~dg----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~  172 (353)
                      .|+|  +.|++++.|+                                  .|++||+.+++....+..+      ...+.
T Consensus       179 ~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~  258 (723)
T 1xfd_A          179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (723)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             EECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeE
Confidence            8888  5677665442                                  7999999888765555543      56789


Q ss_pred             EEEEeC-C-eEEEEcC----CCcEEEEeCCCCCcccccceeeeeccCCcee----eEEEEcCCCCeEEe--ecCCC----
Q 018591          173 GLVASK-G-IVYSASA----DGKIKAWGKELGKSHCHSLKGILEGHKDVSL----NSVVVSDDGKWVYG--GGSDG----  236 (353)
Q Consensus       173 ~i~~~~-~-~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg----  236 (353)
                      .++|++ + .+++.+.    +..|++||+.+++     ....+..+....+    ..++|+|||+.|+.  +..++    
T Consensus       259 ~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  333 (723)
T 1xfd_A          259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK  333 (723)
T ss_dssp             EEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred             EEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-----ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence            999944 4 4444432    3579999998886     3333333222111    37899999997775  45666    


Q ss_pred             --cEEEee-ccccccceeeeeeccc-cce--eEEEEEEcCcEEEEecCC---CeEEEEecCCCcceEEeccccC---CCc
Q 018591          237 --FVMGWE-GNVEIVRWKLACETKA-HEM--AVLCVCLVGEFLCSGSAD---KSIGIWKREAFGKLCRVGAITG---HEG  304 (353)
Q Consensus       237 --~i~i~d-~~~~~~~~~~~~~~~~-~~~--~v~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~---h~~  304 (353)
                        .|.+|| ...+..  .....+.. +..  .+.+++++++.|+..+.+   +.+++|++...... ....+..   |..
T Consensus       334 ~~~l~~~d~~~~~~~--~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~  410 (723)
T 1xfd_A          334 FYHITVSSSQPNSSN--DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLSCDLVENC  410 (723)
T ss_dssp             EEEEEEECSSCCSSS--CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCSSTTSSSSC
T ss_pred             eeEEEEEeccCCCCc--cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC-CcceecccccCCC
Confidence              466677 333310  00112222 221  234677788888765544   78999998754311 1222332   677


Q ss_pred             CeEEEEeecCCCCCCeEEEEc
Q 018591          305 PVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       305 ~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      .+..++|+|+    +++|+..
T Consensus       411 ~~~~~~~spd----g~~l~~~  427 (723)
T 1xfd_A          411 TYFSASFSHS----MDFFLLK  427 (723)
T ss_dssp             CCCEEEECTT----SSEEEEE
T ss_pred             CeEEEEECCC----CCEEEEE
Confidence            7999999999    7777654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=4.3e-20  Score=148.07  Aligned_cols=219  Identities=14%  Similarity=0.019  Sum_probs=154.8

Q ss_pred             EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCC
Q 018591           71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDK  148 (353)
Q Consensus        71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg  148 (353)
                      .++.|+.|++||+.+++.                                 ..+..|...+.+++|+|  +++++++ ++
T Consensus        17 ~~~~~~~i~~~d~~~~~~---------------------------------~~~~~~~~~v~~~~~spdg~~l~~~~-~~   62 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM---------------------------------RVVWQTPELFEAPNWSPDGKYLLLNS-EG   62 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE---------------------------------EEEEEESSCCEEEEECTTSSEEEEEE-TT
T ss_pred             CCCcceeEEEEeCCCCce---------------------------------eeeccCCcceEeeEECCCCCEEEEEc-CC
Confidence            356789999999987651                                 12226788999999999  6677765 78


Q ss_pred             cEEEEEcCC-ceeeeecccc-CcceEEEEEeCC--eEEEEc--CCCcEEEEeC--CCCCcccccceeeeeccCCceeeEE
Q 018591          149 TLKVWRVAD-LKCLESIKAH-DDAVNGLVASKG--IVYSAS--ADGKIKAWGK--ELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       149 ~v~iwd~~~-~~~~~~~~~~-~~~v~~i~~~~~--~l~~~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      .|++||+.+ ++.......+ ...+.+++|+++  .+++++  .++...+|.+  .++.      ...+..+..  +..+
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~--~~~~  134 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT------PRLMTKNLP--SYWH  134 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC------CEECCSSSS--EEEE
T ss_pred             eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc------eEEeecCCC--ccce
Confidence            999999998 8777766555 467889999433  777777  3345555544  4443      223333332  4889


Q ss_pred             EEcCCCCeEE-eecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEec-CCCeEEEEecC-CCcceEE
Q 018591          221 VVSDDGKWVY-GGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGS-ADKSIGIWKRE-AFGKLCR  295 (353)
Q Consensus       221 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i~iw~~~-~~~~~~~  295 (353)
                      +|+|++++++ ++..++.+++|++.....   ....+..+...+.++.+  ++++|+.++ .++.+++|++. .+.   .
T Consensus       135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~  208 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---S  208 (297)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---C
T ss_pred             EECCCCCEEEEEECCCCceEEEEEECCCC---cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---C
Confidence            9999999877 777899999998654321   12233444555566555  577777655 58999999986 333   3


Q ss_pred             eccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----------CeEEEEEcCCCCC
Q 018591          296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----------KSLRVWWVSKQSS  341 (353)
Q Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----------g~i~iw~~~~~~~  341 (353)
                      +..+..|...+.+++|+|+    +++|++++.+           +.|.+||+.+++.
T Consensus       209 ~~~~~~~~~~~~~~~~s~d----g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          209 VERITDSAYGDWFPHPSPS----GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             EEECCCCSEEEEEEEECTT----SSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             cEEEecCCcccCCeEECCC----CCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            4456677888999999999    9999888776           5799999988765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2e-18  Score=142.49  Aligned_cols=281  Identities=12%  Similarity=0.152  Sum_probs=170.3

Q ss_pred             cEEEEEe----CCCcEEEEeC--CCceeeEEeccCceeeEEEEEe--CCEEEEecCC----CcEEEEEcccCccceeEEe
Q 018591           27 EFILSAS----QGKDIIVWQQ--PDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD----SRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        27 ~~l~s~~----~dg~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d----g~i~~w~~~~~~~~~~~~~   94 (353)
                      .+++.|+    .++.|.+|++  .+++.......+......++|+  +++|++++.+    +.|.+|+++..... ...+
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~-~~~~   92 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT-LHLL   92 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE-EEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc-EEEe
Confidence            3555564    4578999975  4565443322255667778887  7788888875    79999998764211 1111


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec-CCCcEEEEEcCCceeeeec------c--
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS-WDKTLKVWRVADLKCLESI------K--  165 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~------~--  165 (353)
                      ...+                           .+......+++..+.+++++ .++.|.+|++.....+..+      .  
T Consensus        93 ~~~~---------------------------~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  145 (361)
T 3scy_A           93 NTQK---------------------------TMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS  145 (361)
T ss_dssp             EEEE---------------------------CSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred             eEec---------------------------cCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence            1111                           23445666777446555554 6889999999754332221      1  


Q ss_pred             ------ccCcceEEEEEeC-C-eEE-EEcCCCcEEEEeCCCCCc----c-cccc---eeeeeccCCceeeEEEEcCCCCe
Q 018591          166 ------AHDDAVNGLVASK-G-IVY-SASADGKIKAWGKELGKS----H-CHSL---KGILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       166 ------~~~~~v~~i~~~~-~-~l~-~~~~dg~i~iwd~~~~~~----~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~  228 (353)
                            .+...+.+++|++ + .++ +...++.|.+|++.....    . ....   ..........+ ..++|+|++++
T Consensus       146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~spdg~~  224 (361)
T 3scy_A          146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP-RHLIFNSDGKF  224 (361)
T ss_dssp             CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE-EEEEECTTSSE
T ss_pred             CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCC-eEEEEcCCCCE
Confidence                  1123457889943 3 454 445588999999875541    0 0000   11112223334 89999999998


Q ss_pred             EEeec-CCCcEEEeeccccccceee-eeeccccce--eEEEEEEcCcEEEEecC--CCeEEEEecCC-CcceEEeccccC
Q 018591          229 VYGGG-SDGFVMGWEGNVEIVRWKL-ACETKAHEM--AVLCVCLVGEFLCSGSA--DKSIGIWKREA-FGKLCRVGAITG  301 (353)
Q Consensus       229 l~~~~-~dg~i~i~d~~~~~~~~~~-~~~~~~~~~--~v~~~~~~~~~l~~~~~--dg~i~iw~~~~-~~~~~~~~~~~~  301 (353)
                      +++++ .++.|.+|++.++...... ......+..  .-.+++++|++|+++..  ++.|.+|++.. ......+..+..
T Consensus       225 l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~  304 (361)
T 3scy_A          225 AYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT  304 (361)
T ss_dssp             EEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence            87766 6899999999865321111 111122112  23455667888866655  48999999962 223334444444


Q ss_pred             CCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEcC--CCCC
Q 018591          302 HEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWVS--KQSS  341 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~--~~~~  341 (353)
                       ...+.+++|+|+    +++|++++ .++.|.+|++.  +++.
T Consensus       305 -g~~~~~~~~spd----g~~l~~~~~~~~~v~v~~~d~~~g~~  342 (361)
T 3scy_A          305 -GIHPRNFIITPN----GKYLLVACRDTNVIQIFERDQATGLL  342 (361)
T ss_dssp             -SSCCCEEEECTT----SCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             -CCCCceEEECCC----CCEEEEEECCCCCEEEEEEECCCCcE
Confidence             457889999999    88888776 67899997654  4543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=3.1e-19  Score=148.87  Aligned_cols=289  Identities=8%  Similarity=-0.027  Sum_probs=185.4

Q ss_pred             CCCCceeeeeeCccCceEE-----EEEC--CcEEEEEeC-CC--cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSS-----LALC--GEFILSASQ-GK--DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF   70 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~-----~~~~--~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~   70 (353)
                      ..++..+..+..|......     .+|+  |++|+.++. +|  .|.+||+.+++......++...+..+.|+  ++.|+
T Consensus        17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred             CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEE
Confidence            3567788889888877766     7785  888888887 66  48889999998887777776666556676  88999


Q ss_pred             EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE--EeC--CeEE----
Q 018591           71 TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT--VYN--GLIY----  142 (353)
Q Consensus        71 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~--~~l~----  142 (353)
                      .++.++.|++||+.+++....   ..                             .+...+....  +++  ..++    
T Consensus        97 ~~~~~~~l~~~d~~~g~~~~~---~~-----------------------------~~~~~~~~~~~~~~~dg~~l~~~~~  144 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEENVV---YQ-----------------------------VPAEWVGYGTWVANSDCTKLVGIEI  144 (388)
T ss_dssp             EEETTTEEEEEETTTCCEEEE---EE-----------------------------CCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcceee---ee-----------------------------chhhcccccceeECCCCCeeccccc
Confidence            999999999999988763211   11                             1122221121  233  2222    


Q ss_pred             ------------------EecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C--eEEEEcC------CCcEEEEeC
Q 018591          143 ------------------SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G--IVYSASA------DGKIKAWGK  195 (353)
Q Consensus       143 ------------------~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~--~l~~~~~------dg~i~iwd~  195 (353)
                                        ....+..|.+||+.+++.... ..+...+..+.|++ +  .++....      ...|.++|.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~  223 (388)
T 3pe7_A          145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE  223 (388)
T ss_dssp             EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred             cCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence                              123457899999988865443 35567788999966 4  5555544      337888887


Q ss_pred             CCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC----cEEEeeccccccceeeeeecccccee-----EEE
Q 018591          196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG----FVMGWEGNVEIVRWKLACETKAHEMA-----VLC  265 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~-----v~~  265 (353)
                      ....     ............+...+|+|||+.|+..+. ++    .|++||+.+++..  .......+...     -..
T Consensus       224 ~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~~~~~~~~~~~~  296 (388)
T 3pe7_A          224 DGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR--QLTSMPACSHLMSNYDGSL  296 (388)
T ss_dssp             TSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE--EEEEECCEEEEEECTTSSE
T ss_pred             CCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE--EEEcCCCceeeeecCCCCe
Confidence            7654     222222222233478899999997765432 22    3999999887422  22222221111     125


Q ss_pred             EEEcCcEEEEe---------cCCCeEEEEecCCCcceEEeccccCCCc-----------CeEEEEeecCCCCCCeEEEEc
Q 018591          266 VCLVGEFLCSG---------SADKSIGIWKREAFGKLCRVGAITGHEG-----------PVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       266 ~~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      ++++|+.|+..         ..+..|++||+.+++.    ..+..|..           .+.+++|+||    |+.|+..
T Consensus       297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~spD----g~~l~~~  368 (388)
T 3pe7_A          297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----HRVARHDTSWKVFEGDRQVTHPHPSFTPD----DKQILFT  368 (388)
T ss_dssp             EEEEECCC------------CCCCEEEEEETTTTEE----EEEEECCCCCCCBTTBSSTTCCCCEECTT----SSEEEEE
T ss_pred             EccCCCcceeEeeeccccccCCCCEEEEEeccCCce----EEeccccCcccccccccccCCCCccCCCC----CCEEEEE
Confidence            78888877643         4567899999988642    23334444           5788999999    8766655


Q ss_pred             c-CCCeEEEEEcCCC
Q 018591          326 S-LDKSLRVWWVSKQ  339 (353)
Q Consensus       326 ~-~dg~i~iw~~~~~  339 (353)
                      + .+|...+|.+.-.
T Consensus       369 s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          369 SDVHGKPALYLATLP  383 (388)
T ss_dssp             ECTTSSCEEEEEECC
T ss_pred             ecCCCceeEEEEECC
Confidence            4 5787778866543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=4.2e-19  Score=146.14  Aligned_cols=241  Identities=11%  Similarity=0.063  Sum_probs=166.3

Q ss_pred             eeeEEEEEe--CCEEEEecC-------CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           57 GSVKAVVTV--GNKVFTAHQ-------DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        57 ~~v~~~~~~--~~~l~s~~~-------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      ..+..++++  ++++++++.       ++.|.+||..+++     ....+                            ..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-----~~~~~----------------------------~~   87 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-----VTQAI----------------------------HN   87 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-----EEEEE----------------------------EE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-----EEEEE----------------------------ec
Confidence            456778887  677777763       5689999998775     22211                            12


Q ss_pred             CCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCc---------ceEEEEEeC--CeEEEEc--CCCcEE
Q 018591          128 ADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDD---------AVNGLVASK--GIVYSAS--ADGKIK  191 (353)
Q Consensus       128 ~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~v~~i~~~~--~~l~~~~--~dg~i~  191 (353)
                      ...+..+.+++  + .+++...++.|.+||..+++.+..+..+..         .+.++++++  +.+++++  .++.|.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            23456778888  5 455566689999999999988887765432         268888843  3555554  478999


Q ss_pred             EEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeE--EEEEEc
Q 018591          192 AWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLV  269 (353)
Q Consensus       192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~  269 (353)
                      +||..+++     ....+..+...+ ..++|+|+++++++++.++.+.+||..++...........++...+  .+++++
T Consensus       168 ~~d~~~~~-----~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          168 VVDGGNIK-----LKTAIQNTGKMS-TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA  241 (353)
T ss_dssp             EEETTTTE-----EEEEECCCCTTC-CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT
T ss_pred             EEcCCCCc-----eEEEecCCCCcc-ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC
Confidence            99999886     455555344444 8899999999999999999999999988743332222112233334  455666


Q ss_pred             CcEEEEec-CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeE-EEEccCCCeEEEEEcCCCCCcccc
Q 018591          270 GEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFL-LYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       270 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ++++++++ .++.|.+||..+++....   +....  ...++|+|+    +++ +++...++.|.+||+.+++.+...
T Consensus       242 g~~l~~~~~~~~~v~~~d~~~~~~~~~---~~~~~--~~~~~~s~d----g~~l~v~~~~~~~v~~~d~~~~~~~~~~  310 (353)
T 3vgz_A          242 RQRAFITDSKAAEVLVVDTRNGNILAK---VAAPE--SLAVLFNPA----RNEAYVTHRQAGKVSVIDAKSYKVVKTF  310 (353)
T ss_dssp             TTEEEEEESSSSEEEEEETTTCCEEEE---EECSS--CCCEEEETT----TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEE---EEcCC--CceEEECCC----CCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            87666555 459999999998874333   33222  256999999    774 455557999999999988766544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=4.2e-18  Score=140.62  Aligned_cols=276  Identities=12%  Similarity=0.094  Sum_probs=164.8

Q ss_pred             ccCceEEEEEC--CcEEEEEeCC----CcEEEEeCCC--cee--eEEeccCceeeEEEEEeCCEEEEec-CCCcEEEEEc
Q 018591           15 HVGSVSSLALC--GEFILSASQG----KDIIVWQQPD--LRM--FTKFGHGDGSVKAVVTVGNKVFTAH-QDSRIRVWKV   83 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~d----g~v~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~i~~w~~   83 (353)
                      |......++|+  +++|++++.+    +.|.+|++..  ++.  +.....+......+++++++|++++ .++.+.+|++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            66778888996  8889998886    7999998765  443  3344444555666777877777665 6789999999


Q ss_pred             ccCccc-eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEE-ecCCCcEEEEEcCCce
Q 018591           84 SRSSEN-VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS-GSWDKTLKVWRVADLK  159 (353)
Q Consensus        84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~-~~~dg~v~iwd~~~~~  159 (353)
                      ...... ............                   ......+...+.+++|+|  +++++ ...++.|.+|++....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~-------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~  188 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSG-------------------PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA  188 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCC-------------------SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred             CCCCcCcccceeEEccCCC-------------------CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence            754310 000000000000                   000002344578899999  54544 4558899999987533


Q ss_pred             e------e-------eeccccCcceEEEEEeCC--eEEEEc-CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc
Q 018591          160 C------L-------ESIKAHDDAVNGLVASKG--IVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       160 ~------~-------~~~~~~~~~v~~i~~~~~--~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                      .      +       .....+...+..++|+++  .+++++ .++.|.+||+.++.............+...+ ..++|+
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~-~~i~~s  267 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS-GDIHLS  267 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE-EEEEEC
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc-ccEEEC
Confidence            1      1       111233456788999443  565555 6899999999866421111111122222334 799999


Q ss_pred             CCCCeEEeecC--CCcEEEeeccccccceeeeeecc-ccceeEEEEEEcCcEEEEec-CCCeEEEEecC--CCcceEEec
Q 018591          224 DDGKWVYGGGS--DGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVCLVGEFLCSGS-ADKSIGIWKRE--AFGKLCRVG  297 (353)
Q Consensus       224 ~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~  297 (353)
                      |+|++|+++..  ++.|.+|++.............. +....-.+++++|++|++++ .++.|.+|+++  +++. ..+.
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~-~~~~  346 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL-TDIK  346 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE-EECS
T ss_pred             CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE-eecc
Confidence            99998876665  48999999963211222222222 22223455666788887776 67999997554  4442 1111


Q ss_pred             cccCCCcCeEEEEee
Q 018591          298 AITGHEGPVKCLQAS  312 (353)
Q Consensus       298 ~~~~h~~~v~~~~~~  312 (353)
                       -..+...+.|+.|.
T Consensus       347 -~~~~~~~p~~v~~~  360 (361)
T 3scy_A          347 -KDIKVDKPVCLKFV  360 (361)
T ss_dssp             -CCEECSSEEEEEEE
T ss_pred             -eeeeCCCCeEEEEc
Confidence             12244568888886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=1.1e-18  Score=142.53  Aligned_cols=242  Identities=12%  Similarity=0.103  Sum_probs=163.4

Q ss_pred             CCCCceeeeeeCcc-C-ceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccC-----ceeeEEEEEe--CCEEE
Q 018591            3 CKSHRSLAVLSGHV-G-SVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHG-----DGSVKAVVTV--GNKVF   70 (353)
Q Consensus         3 ~~~~~~~~~l~~h~-~-~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~~~~--~~~l~   70 (353)
                      ..+++.+..+.... . .+.+++|+  ++++ ++++.++.|.+||+.+++.+..+...     ...+..++++  +++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~   97 (337)
T 1pby_B           18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEE
Confidence            45677777776332 2 48889996  6554 56667899999999999988776532     2356778887  67888


Q ss_pred             Eec------------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591           71 TAH------------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN  138 (353)
Q Consensus        71 s~~------------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  138 (353)
                      +++            .++.|.+||+.+++     ....+                            .....+.++.|+|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~s~  144 (337)
T 1pby_B           98 IYESPVRLELTHFEVQPTRVALYDAETLS-----RRKAF----------------------------EAPRQITMLAWAR  144 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTE-----EEEEE----------------------------ECCSSCCCEEECT
T ss_pred             EEecccccccccccccCceEEEEECCCCc-----EEEEE----------------------------eCCCCcceeEECC
Confidence            875            57999999997764     11111                            1223466788988


Q ss_pred             --CeEEEecCCCcEEEEEcCCceeeeeccccC--cceEEEEEeC--CeEEEEc-CCC-----------------------
Q 018591          139 --GLIYSGSWDKTLKVWRVADLKCLESIKAHD--DAVNGLVASK--GIVYSAS-ADG-----------------------  188 (353)
Q Consensus       139 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~--~~l~~~~-~dg-----------------------  188 (353)
                        +.++++  ++.|.+||+.+++.+..+..+.  .++   .+++  ..++..+ .++                       
T Consensus       145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T 1pby_B          145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence              567776  6899999999998877665433  222   3322  2232222 222                       


Q ss_pred             cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc-ccceeEEEEE
Q 018591          189 KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVC  267 (353)
Q Consensus       189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~  267 (353)
                      .|.+||+.+++..    ...+..+...+ ..++|+|++++++++  ++.|.+||+.+++..    ..+. .+.....+++
T Consensus       220 ~v~~~d~~~~~~~----~~~~~~~~~~~-~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~s  288 (337)
T 1pby_B          220 GLLTMDLETGEMA----MREVRIMDVFY-FSTAVNPAKTRAFGA--YNVLESFDLEKNASI----KRVPLPHSYYSVNVS  288 (337)
T ss_dssp             EEEEEETTTCCEE----EEEEEECSSCE-EEEEECTTSSEEEEE--ESEEEEEETTTTEEE----EEEECSSCCCEEEEC
T ss_pred             ceEEEeCCCCCce----EeecCCCCCce-eeEEECCCCCEEEEe--CCeEEEEECCCCcCc----ceecCCCceeeEEEC
Confidence            4789999987621    22233333444 789999999999988  799999999887322    2222 2223344556


Q ss_pred             EcCcEEEEecCCCeEEEEecCCCcce
Q 018591          268 LVGEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       268 ~~~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                      +++++|++++.++.|++||+.+++..
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            67888888899999999999988743

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=2.4e-17  Score=135.36  Aligned_cols=256  Identities=13%  Similarity=0.110  Sum_probs=156.1

Q ss_pred             eCccCceEEEEEC--CcEEEEEeC---CCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEec-CCCcEEEEE
Q 018591           13 SGHVGSVSSLALC--GEFILSASQ---GKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAH-QDSRIRVWK   82 (353)
Q Consensus        13 ~~h~~~v~~~~~~--~~~l~s~~~---dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~-~dg~i~~w~   82 (353)
                      ..+...+..++|+  |+ |++++.   ++.|++||+.+++  .+..+..+...+..++|+  +++|++++ .++.+.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            4456777889996  67 555544   6899999997766  444444556678888887  77788777 778999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcC-Cce
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVA-DLK  159 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~-~~~  159 (353)
                      ++....  ...+..+.....                .+.  ...+...+.+++|+|  +++++...++.|.+||+. +++
T Consensus       115 ~~~~g~--~~~~~~~~~~~~----------------~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~  174 (347)
T 3hfq_A          115 IAADGA--LTLTDTVQHSGH----------------GPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ  174 (347)
T ss_dssp             ECTTSC--EEEEEEEECCCC----------------CSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred             eCCCCC--eeecceeecCCC----------------CCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence            964321  111111110000                000  002344688999998  655666678899999998 444


Q ss_pred             ee--eecccc-CcceEEEEEeCC--eE-EEEcCCCcEEEEeCCCCCcccccceeeeeccCC-----ceeeEEEEcCCCCe
Q 018591          160 CL--ESIKAH-DDAVNGLVASKG--IV-YSASADGKIKAWGKELGKSHCHSLKGILEGHKD-----VSLNSVVVSDDGKW  228 (353)
Q Consensus       160 ~~--~~~~~~-~~~v~~i~~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~  228 (353)
                      ..  ..+..+ ...+..++|+++  ++ ++...++.+.+|++....... ...........     ..+..++|+|+|++
T Consensus       175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            32  222222 336778999443  34 446678999999987522110 11112222111     22488999999998


Q ss_pred             EE-eecCCCcEEEeeccccccceeeeeeccccc--eeEEEEEEcCcEEEEecC-CCeEEEEec--CCCc
Q 018591          229 VY-GGGSDGFVMGWEGNVEIVRWKLACETKAHE--MAVLCVCLVGEFLCSGSA-DKSIGIWKR--EAFG  291 (353)
Q Consensus       229 l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~-dg~i~iw~~--~~~~  291 (353)
                      |+ +...++.|.+|++.... ..........+.  ..-.++++++++|++++. ++.|.+|++  .+++
T Consensus       254 l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             EEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             EEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            74 55568999999997431 223333333322  233455667888877765 589999955  4444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=5.9e-18  Score=139.81  Aligned_cols=271  Identities=13%  Similarity=0.118  Sum_probs=165.1

Q ss_pred             EEEEEeCC--CcEEEEeC--CCceeeEE--ec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcc-cCccceeEEeecc
Q 018591           28 FILSASQG--KDIIVWQQ--PDLRMFTK--FG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS-RSSENVFRLVDTL   97 (353)
Q Consensus        28 ~l~s~~~d--g~v~vwd~--~~~~~~~~--~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~-~~~~~~~~~~~~~   97 (353)
                      +++.|+..  +.|.+|++  .++++...  .. .....+..++++  +++|++++.+ .|.+|+++ +++..   .....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---~~~~~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---HEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---EEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---EeeEe
Confidence            45666653  56888764  56654322  21 233467778887  7788888887 99999997 44311   00000


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C--eEEEec-------------CCCcEEEEEcC-Cce
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G--LIYSGS-------------WDKTLKVWRVA-DLK  159 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~l~~~~-------------~dg~v~iwd~~-~~~  159 (353)
                      +                           .+ +....++++|  +  +++++.             .+|.+.+|++. +++
T Consensus        80 ~---------------------------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~  131 (365)
T 1jof_A           80 P---------------------------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK  131 (365)
T ss_dssp             E---------------------------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC
T ss_pred             e---------------------------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc
Confidence            0                           00 1123366666  3  244543             68999999997 455


Q ss_pred             eeeecc----ccCcceEEEEEeC-C-eEEEEc-CCCcEEEEeCC-CCCcccccceeeeec--cCCceeeEEEEcCCCCeE
Q 018591          160 CLESIK----AHDDAVNGLVASK-G-IVYSAS-ADGKIKAWGKE-LGKSHCHSLKGILEG--HKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       160 ~~~~~~----~~~~~v~~i~~~~-~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l  229 (353)
                      ....+.    .+...+.+++|++ + +++++. .++.|++||+. +++.   .....+..  +...+ ..++|+|+|+++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~---~~~~~~~~~~~g~~p-~~~~~spdg~~l  207 (365)
T 1jof_A          132 LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV---ELVGSVDAPDPGDHP-RWVAMHPTGNYL  207 (365)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE---EEEEEEECSSTTCCE-EEEEECTTSSEE
T ss_pred             CcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE---EEeeeEecCCCCCCC-CEeEECCCCCEE
Confidence            544333    2456789999944 3 566554 46899999998 5541   11122221  23344 899999999998


Q ss_pred             EeecC-CCcEEEeeccc--cccce--eeeeecc----ccc--------eeEEE-EEEcCcEEEEecCC-C-----eEEEE
Q 018591          230 YGGGS-DGFVMGWEGNV--EIVRW--KLACETK----AHE--------MAVLC-VCLVGEFLCSGSAD-K-----SIGIW  285 (353)
Q Consensus       230 ~~~~~-dg~i~i~d~~~--~~~~~--~~~~~~~----~~~--------~~v~~-~~~~~~~l~~~~~d-g-----~i~iw  285 (353)
                      ++++. ++.|.+|++..  +....  .....+.    ++.        ..-.+ ++++|++|+++..+ +     .|.+|
T Consensus       208 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~  287 (365)
T 1jof_A          208 YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGF  287 (365)
T ss_dssp             EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEE
T ss_pred             EEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEE
Confidence            87664 78999998753  32111  1111121    222        22344 55678888776543 2     89999


Q ss_pred             ecC-CCcceEEec-cccCCCcCeEEEEeec---CCCCCCeEEEEccCC-CeEEEEEcCCC
Q 018591          286 KRE-AFGKLCRVG-AITGHEGPVKCLQASP---NAVGGGFLLYSGSLD-KSLRVWWVSKQ  339 (353)
Q Consensus       286 ~~~-~~~~~~~~~-~~~~h~~~v~~~~~~~---~~~~~~~~l~s~~~d-g~i~iw~~~~~  339 (353)
                      ++. +++ ...+. ....+...+..++|+|   +    +++|++++.+ +.|.+|++...
T Consensus       288 ~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~d----g~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          288 KLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWS----DEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EECTTSC-EEEEEEEEECSSCCTTCCCEEECTTC----TTEEEEECSSSCEEEEEEEETT
T ss_pred             EECCCCC-EEEeeeeeecCCCCcccceecCCCcC----CCEEEEEEcCCCeEEEEEEchh
Confidence            996 443 22221 1333455677899999   8    8888888764 89999998765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.1e-18  Score=153.26  Aligned_cols=226  Identities=9%  Similarity=0.003  Sum_probs=154.1

Q ss_pred             ceeeEEEEEe--CCEEEEecC-CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-Cce
Q 018591           56 DGSVKAVVTV--GNKVFTAHQ-DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSI  131 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i  131 (353)
                      ..+|.+++|+  |+.|+.++. ||++++|+++++..      .                           .+..|. ..+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------~---------------------------~lt~~~~~~~   67 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------V---------------------------KLNREPINSV   67 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------E---------------------------ECCSSCCSEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------E---------------------------eeeccccccc
Confidence            5578888887  889998877 99999999865541      1                           111333 578


Q ss_pred             EEEEEeC-CeEEEecC---CCcEEEEEcCC---ceeeeeccccCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccc
Q 018591          132 SCLTVYN-GLIYSGSW---DKTLKVWRVAD---LKCLESIKAHDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       132 ~~~~~~~-~~l~~~~~---dg~v~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      ..+.|+| ..+++++.   +....+|.+..   +........+...+.+++++++ .+++.+.++.+.+||+.+++    
T Consensus        68 ~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~----  143 (582)
T 3o4h_A           68 LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG----  143 (582)
T ss_dssp             CEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE----
T ss_pred             ccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc----
Confidence            8899998 45555554   45556655432   2222222222222334444443 44555555566699998876    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCC----CcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEEEEec
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGS  277 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~  277 (353)
                       ....... ..   .+++|+|||+++++++.+    +.|++||+.++...     .+..+...+...  +++|+.|+++.
T Consensus       144 -~~~l~~~-~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          144 -LRELARL-PG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             -EEEEEEE-SS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCEEEEEEECTTSCEEEEEE
T ss_pred             -EEEeecC-CC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCccccceECCCCCEEEEcc
Confidence             3333322 22   688999999999988776    78999999877321     334455555444  55699999888


Q ss_pred             CCC--eEEEEecCCCcceEEeccccCCCcCeEEEE--------eecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          278 ADK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQ--------ASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       278 ~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      .++  .|++||+.+++.   . .+.+|...+..++        |+||    |.++++++.||.+++|++
T Consensus       214 ~~~~~~i~~~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~spd----g~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSV---E-DLELPSKDFSSYRPTAITWLGYLPD----GRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSSCEEEEEECTTTCCE---E-ECCCSCSHHHHHCCSEEEEEEECTT----SCEEEEEEETTEEEEEET
T ss_pred             CCCeeEEEEEcCCCCcE---E-EccCCCcChhhhhhccccceeEcCC----CcEEEEEEcCCcEEEEEE
Confidence            888  899999998763   3 4567777777777        9999    899999999999999999

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=7.7e-19  Score=158.20  Aligned_cols=273  Identities=9%  Similarity=-0.029  Sum_probs=171.9

Q ss_pred             EEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCce---eeEEEEEe--CCEEEEecC---------CCcEEEEEcc
Q 018591           21 SLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG---SVKAVVTV--GNKVFTAHQ---------DSRIRVWKVS   84 (353)
Q Consensus        21 ~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~--~~~l~s~~~---------dg~i~~w~~~   84 (353)
                      +++|+  +++++ .+.|+.|++||+.+++....+.+|..   .+.+++|+  |++|++++.         ++.|++||++
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67785  65555 45699999999999998887776654   38889998  888888876         7899999998


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      +++.     +...                            .....+..++|+|  +.|+.+. ++.|++||+.+++...
T Consensus        99 ~g~~-----~~~~----------------------------~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A           99 NGEF-----VRGN----------------------------ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             TTEE-----CCSS----------------------------CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             CCcc-----ccce----------------------------ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence            8751     0000                            0123577899999  6677764 7899999998877654


Q ss_pred             ec-cccCcce-----------------EEEEEeCC--eEEEEcCCC----------------------------------
Q 018591          163 SI-KAHDDAV-----------------NGLVASKG--IVYSASADG----------------------------------  188 (353)
Q Consensus       163 ~~-~~~~~~v-----------------~~i~~~~~--~l~~~~~dg----------------------------------  188 (353)
                      .. .++...+                 .+++|+++  .|++++.|.                                  
T Consensus       145 l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~  224 (719)
T 1z68_A          145 ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV  224 (719)
T ss_dssp             CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred             EecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence            33 2222222                 47899444  777776542                                  


Q ss_pred             cEEEEeCCCCCcc---cccceeeeeccCCceeeEEEEcCCCCeEEeecCC----CcEEEee----ccccccceeeeeecc
Q 018591          189 KIKAWGKELGKSH---CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWE----GNVEIVRWKLACETK  257 (353)
Q Consensus       189 ~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~  257 (353)
                      .|++||+.+++..   .......+..+... +..++|+||++++++....    ..|.+||    ..++...........
T Consensus       225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~  303 (719)
T 1z68_A          225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYY-FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEE  303 (719)
T ss_dssp             EEEEEESSCHHHHCCEECCCCHHHHTSCEE-EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEE
T ss_pred             EEEEEECCCCCccceeEccCCccCCCCcce-EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccc
Confidence            7889999876510   00000122344444 4899999998777764322    2488888    666532211100002


Q ss_pred             cccee-------EEEEEEcCcEEE--EecCCC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE-EEc
Q 018591          258 AHEMA-------VLCVCLVGEFLC--SGSADK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL-YSG  325 (353)
Q Consensus       258 ~~~~~-------v~~~~~~~~~l~--~~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l-~s~  325 (353)
                      .+...       ...++++|+.++  +...+|  .|.+||+.+++    ...+..+...+..+.++ +    ++.| +++
T Consensus       304 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d----~~~i~~~~  374 (719)
T 1z68_A          304 SRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-T----QDSLFYSS  374 (719)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-C----SSEEEEEE
T ss_pred             cCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-e----CCEEEEEE
Confidence            23322       335667787544  344555  57777876654    22344556668887777 5    4444 444


Q ss_pred             cC----CCeEEEEEcCC
Q 018591          326 SL----DKSLRVWWVSK  338 (353)
Q Consensus       326 ~~----dg~i~iw~~~~  338 (353)
                      ..    ++..++|.+..
T Consensus       375 ~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          375 NEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCGGGCTTCBEEEEEEC
T ss_pred             ecCCCCCceEEEEEEeC
Confidence            44    48899998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=3e-18  Score=154.38  Aligned_cols=297  Identities=10%  Similarity=0.025  Sum_probs=184.3

Q ss_pred             CCCCceeeeeeCccC---ceEEEEEC--CcEEEEEeC---------CCcEEEEeCCCceee--EEeccCceeeEEEEEe-
Q 018591            3 CKSHRSLAVLSGHVG---SVSSLALC--GEFILSASQ---------GKDIIVWQQPDLRMF--TKFGHGDGSVKAVVTV-   65 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~---~v~~~~~~--~~~l~s~~~---------dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~-   65 (353)
                      ..++++...+.+|..   .|.+++|+  |++|++++.         |+.|++||+.+++.+  ..+   ...+..++|+ 
T Consensus        43 ~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP  119 (719)
T 1z68_A           43 IETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP  119 (719)
T ss_dssp             SSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECS
T ss_pred             cCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECC
Confidence            456676666766654   49999996  889998876         789999999998873  122   2457788887 


Q ss_pred             -CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCc---------eEEEE
Q 018591           66 -GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADS---------ISCLT  135 (353)
Q Consensus        66 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------i~~~~  135 (353)
                       |+.|+.+. ++.|++|++.++.....   .. ..                   ....++.++...         ..++.
T Consensus       120 DG~~la~~~-~~~i~~~~~~~g~~~~l---~~-~~-------------------~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A          120 VGSKLAYVY-QNNIYLKQRPGDPPFQI---TF-NG-------------------RENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             STTCEEEEE-TTEEEEESSTTSCCEEC---CC-CC-------------------BTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCCEEEEEE-CCeEEEEeCCCCCcEEE---ec-CC-------------------CcCCeEcccccceeeeecccCcccEE
Confidence             78888875 67999999987753111   00 00                   000111233222         25788


Q ss_pred             EeC--CeEEEecCCC----------------------------------cEEEEEcCCceee--------eeccccCcce
Q 018591          136 VYN--GLIYSGSWDK----------------------------------TLKVWRVADLKCL--------ESIKAHDDAV  171 (353)
Q Consensus       136 ~~~--~~l~~~~~dg----------------------------------~v~iwd~~~~~~~--------~~~~~~~~~v  171 (353)
                      |+|  +.|++++.|.                                  .|++||+.+++..        ..+.+|...+
T Consensus       176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  255 (719)
T 1z68_A          176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF  255 (719)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred             ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence            998  6787776542                                  7889999887653        2234678889


Q ss_pred             EEEEEeC-CeE-EEEcCC----CcEEEEe----CCCCCcccccceeee----eccCCceee-----EEEEcCCCCeEEe-
Q 018591          172 NGLVASK-GIV-YSASAD----GKIKAWG----KELGKSHCHSLKGIL----EGHKDVSLN-----SVVVSDDGKWVYG-  231 (353)
Q Consensus       172 ~~i~~~~-~~l-~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~----~~~~~~~v~-----~~~~~~~~~~l~~-  231 (353)
                      ..++|++ +.+ ++....    ..|.+||    ..+++     .....    ..+...+ .     .+.|+|||+.++. 
T Consensus       256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-----CPKTQEHIEESRTGWA-GGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-----CCGGGEEEEECSSSCS-SSSSCCCCEECTTSSCEEEE
T ss_pred             EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-----eEEEEecccccCCceE-ccccCCccEECCCCCeEEEE
Confidence            9999944 444 342222    2488899    76665     23333    3444433 4     7899999986554 


Q ss_pred             -ecCCC--cEEEeeccccccceeeeeeccccceeEEE--EEEcCcEEEEecC-----CCeEEEEecCC--Cc-ceEEecc
Q 018591          232 -GGSDG--FVMGWEGNVEIVRWKLACETKAHEMAVLC--VCLVGEFLCSGSA-----DKSIGIWKREA--FG-KLCRVGA  298 (353)
Q Consensus       232 -~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~-----dg~i~iw~~~~--~~-~~~~~~~  298 (353)
                       ...+|  .|.+||+..+.     ...+..+...+..  .. +++.|+..+.     ++..++|.+..  +. ....+..
T Consensus       330 ~~~~~g~~~l~~~~~~~~~-----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~  403 (719)
T 1z68_A          330 FSDKDGYKHIHYIKDTVEN-----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC  403 (719)
T ss_dssp             EECTTSCEEEEEESSCSTT-----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred             EEccCCceEEEEEECCCCc-----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence             44555  46666766552     1122222222222  22 6666555544     47888998764  21 1223321


Q ss_pred             -ccCCCcCeEEEEeecCCCCCCeEEE-EccCC--CeEEEEEcCCCCCc
Q 018591          299 -ITGHEGPVKCLQASPNAVGGGFLLY-SGSLD--KSLRVWWVSKQSST  342 (353)
Q Consensus       299 -~~~h~~~v~~~~~~~~~~~~~~~l~-s~~~d--g~i~iw~~~~~~~~  342 (353)
                       +.+|...+..+.|+|+    +++++ +++.+  ..+.+|++.+++..
T Consensus       404 ~~~~~~~~~~~~~~s~d----g~~l~~~~s~~~~p~~~l~d~~~g~~~  447 (719)
T 1z68_A          404 HLRKERCQYYTASFSDY----AKYYALVCYGPGIPISTLHDGRTDQEI  447 (719)
T ss_dssp             TTTTTTBCBEEEEECGG----GSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred             ccCCCCCceEEEEECCC----CCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence             3346778889999998    66655 44443  47889998877644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=7.4e-18  Score=140.93  Aligned_cols=304  Identities=8%  Similarity=-0.055  Sum_probs=178.5

Q ss_pred             CCCCCceeeeeeCccCc-----eEEEEEC--CcEEEEEeCC---CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE
Q 018591            2 PCKSHRSLAVLSGHVGS-----VSSLALC--GEFILSASQG---KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV   69 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~-----v~~~~~~--~~~l~s~~~d---g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l   69 (353)
                      ...+++.+..+..+...     +.+++|+  |++|+....+   ..|.+||+.+++......++......+.|+  ++.|
T Consensus        16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l   95 (396)
T 3c5m_A           16 DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAF   95 (396)
T ss_dssp             CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEE
T ss_pred             cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEE
Confidence            34567777777766544     7778886  8887766543   478889998887665544433323335666  7889


Q ss_pred             EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe---
Q 018591           70 FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG---  144 (353)
Q Consensus        70 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~---  144 (353)
                      +.++.++.|++|++.+++...   +...+..      .......+.........-    .......++|  +.++..   
T Consensus        96 ~~~~~~~~l~~~d~~~~~~~~---~~~~~~~------~~~~g~~l~~~~~~~~~~----~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           96 FYVKNELNLMKVDLETLEEQV---IYTVDEE------WKGYGTWVANSDCTKLVG----IEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             EEEETTTEEEEEETTTCCEEE---EEECCTT------EEEEEEEEECTTSSEEEE----EEEEGGGCCCCCSHHHHHHHH
T ss_pred             EEEEcCCcEEEEECCCCCcEE---EEecccc------cCCCCCEEEeccCCcccc----ccccccccCCCCcceeeeeec
Confidence            999888899999998765321   1111111      000011111000000000    0000123344  334333   


Q ss_pred             --cCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--C-eEEEEcCC------CcEEEEeCCCCCcccccceeeeeccC
Q 018591          145 --SWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--G-IVYSASAD------GKIKAWGKELGKSHCHSLKGILEGHK  213 (353)
Q Consensus       145 --~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~  213 (353)
                        ..+..|.+||+.+++..... .+...+..+.|++  + .++..+.+      ..|.+||+..++     .........
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~  236 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAE  236 (396)
T ss_dssp             HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCT
T ss_pred             cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCC
Confidence              35678999999887765544 4567788899955  3 45554433      468888887654     222222111


Q ss_pred             CceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEE-cCcEEEEec----------
Q 018591          214 DVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGS----------  277 (353)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~----------  277 (353)
                      ...+..++|+|++++|+..+.+     +.|++||+.++...  ........  . ..+++ ++++++.++          
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE--EVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE--EEEECCSE--E-EEEECSSSSEEEEEECCC-------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE--EeeeCCCC--C-CCccCCCCceEEEecCCcceeeccc
Confidence            3335789999999987766443     34999999876322  11222222  2 56777 888887654          


Q ss_pred             ------CCCeEEEEecCCCcceEEeccccCCCc-----------CeEEEEeecCCCCCCeEEEEccC-CCeEEEEEcC
Q 018591          278 ------ADKSIGIWKREAFGKLCRVGAITGHEG-----------PVKCLQASPNAVGGGFLLYSGSL-DKSLRVWWVS  337 (353)
Q Consensus       278 ------~dg~i~iw~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~~l~s~~~-dg~i~iw~~~  337 (353)
                            .++.|++||+.+++.    ..+..+..           .+..+.|+|+    ++.|+.++. ++...+|.+.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPN----DDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTT----SSEEEEEECTTSSCEEEEEE
T ss_pred             cccccCCCCcEEEEecccCce----EEccCCCCccccccccccCCCCCceEccC----CCeEEEEecCCCCceEEEEE
Confidence                  347899999987652    22333333           2567889999    877766654 5665666544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.80  E-value=4.2e-17  Score=134.07  Aligned_cols=270  Identities=10%  Similarity=0.074  Sum_probs=175.7

Q ss_pred             CCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCccceeEEeecccccc
Q 018591           34 QGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        34 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      .|+.|.+||..+++.+..+..+..+  .++++  +++++++.          .++.|.+||..+.+     .+..++...
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-----~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-----FEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-----EEEEEEECT
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-----EEEEEEcCc
Confidence            4789999999999999888877666  78887  77888875          36789999987665     222221100


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee-ccccCcceEEEEE
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES-IKAHDDAVNGLVA  176 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~-~~~~~~~v~~i~~  176 (353)
                      .                   .  ..+......++++|  ++|+++..  ++.|.+||+.+++.+.. +... .. ..+.+
T Consensus       102 ~-------------------~--~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~-~~v~~  158 (361)
T 2oiz_A          102 K-------------------R--VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GC-WSVIP  158 (361)
T ss_dssp             T-------------------B--CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TE-EEEEE
T ss_pred             c-------------------c--cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-Cc-ceeEE
Confidence            0                   0  01223445688888  67777753  68999999999998887 6532 22 22333


Q ss_pred             -eC--CeEEEEcCCCcEEEEeCCCCCcccccce--eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccccee
Q 018591          177 -SK--GIVYSASADGKIKAWGKELGKSHCHSLK--GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK  251 (353)
Q Consensus       177 -~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  251 (353)
                       +.  ..+++.+.||.+.+|+............  ..+..... + ..+.++|++..++..+.++.+.++|+........
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~  236 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDD-P-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVD  236 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTS-C-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCC-c-eEEEecccCCEEEEEeCCCeEEEEEecCCCceec
Confidence             32  3788889999999999865321000000  11111111 1 2334467777777777889999999875421111


Q ss_pred             eeeec----------cccceeEEEEEEcCcEEEEecC-----------CCeEEEEecCCCcceEEeccccCCCcCeEEEE
Q 018591          252 LACET----------KAHEMAVLCVCLVGEFLCSGSA-----------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQ  310 (353)
Q Consensus       252 ~~~~~----------~~~~~~v~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~  310 (353)
                      .....          .........++++++.++++..           .+.|.+||+.+.+   .+..+..+.  +.+++
T Consensus       237 ~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~~--p~~ia  311 (361)
T 2oiz_A          237 GPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGRD--ALSMT  311 (361)
T ss_dssp             EEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECTT--CCEEE
T ss_pred             ccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc---EEEEEecCC--eeEEE
Confidence            00000          0011112567778776665432           4589999999887   566666665  99999


Q ss_pred             eecCCCCCCeEEEEccCCCeEEEEEcCCC--CCcccc
Q 018591          311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQ--SSTSDS  345 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~  345 (353)
                      |+|+    |++|++++. +.|.+||.+++  +.+.+.
T Consensus       312 ~spd----g~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          312 IDQQ----RNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EETT----TTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             ECCC----CCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            9999    999998887 99999999999  776653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=7.3e-16  Score=125.33  Aligned_cols=264  Identities=9%  Similarity=0.036  Sum_probs=169.6

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      -+.+.+|+++  |+++++...++.+.+++.....   .+..+....             -.++.|.+||.++++     .
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~i~~~d~~~g~-----~   81 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKF---VYQQRGLGP-------------IEEDTILVIDPNNAE-----I   81 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTS---CBSCGGGCS-------------CCSCCEEEECTTTCC-----E
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcce---eeccccccc-------------ccCCcEEEEECCCCe-----E
Confidence            4678889999  7788877777765554433221   121111100             146789999987665     1


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce-eeeec------
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK-CLESI------  164 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-~~~~~------  164 (353)
                      ......                          ++......+++++  +++++...++.|++||..... .+..+      
T Consensus        82 ~~~~~~--------------------------~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~  135 (329)
T 3fvz_A           82 LQSSGK--------------------------NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP  135 (329)
T ss_dssp             EEEECT--------------------------TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC
T ss_pred             EeccCC--------------------------CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC
Confidence            111110                          2345678899988  677777788999999975432 44444      


Q ss_pred             ---cccCcceEEEEEe--CC-eEEEEc-CCCcEEEEeCCCCCcccccceeeeec----------cCCceeeEEEEcCC-C
Q 018591          165 ---KAHDDAVNGLVAS--KG-IVYSAS-ADGKIKAWGKELGKSHCHSLKGILEG----------HKDVSLNSVVVSDD-G  226 (353)
Q Consensus       165 ---~~~~~~v~~i~~~--~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~-~  226 (353)
                         ..+-.....+++.  ++ .+++.+ .++.|++||. ++.     ....+..          +...+ ..++++|+ +
T Consensus       136 g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~-----~~~~~~~~g~~~~~~~~~~~~p-~gia~d~~~g  208 (329)
T 3fvz_A          136 GSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK-----FVTQWGEESSGSSPRPGQFSVP-HSLALVPHLD  208 (329)
T ss_dssp             CCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC-----EEEEECEECCSSSCCTTEESCE-EEEEEETTTT
T ss_pred             CCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC-----EEEEeccCCCCCCCCCcccCCC-cEEEEECCCC
Confidence               2334468899994  34 445554 5899999994 443     3333321          22235 89999998 7


Q ss_pred             CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--------cCcEEEEecCCCeEEEEecCCCcceEEecc
Q 018591          227 KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--------VGEFLCSGSADKSIGIWKREAFGKLCRVGA  298 (353)
Q Consensus       227 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  298 (353)
                      .++++...++.|++|+..+++.......  ..+...+..+.+        +++..++...+..|++|+..+++....+..
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~  286 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP  286 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence            7778888899999999986532222111  122223333333        344444455567999999998874433322


Q ss_pred             ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          299 ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       299 ~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      ..++...+..++++|+    |.++++...++.|++|++...
T Consensus       287 ~~~~~~~p~~ia~~~d----G~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          287 VRKHFDMPHDIVASED----GTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             SSSCCSSEEEEEECTT----SEEEEEESSSCCEEEEEEEEC
T ss_pred             CCCccCCeeEEEECCC----CCEEEEECCCCEEEEEeCCcc
Confidence            2467778999999999    999999999999999998754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=5.4e-16  Score=125.90  Aligned_cols=264  Identities=11%  Similarity=0.008  Sum_probs=176.4

Q ss_pred             CCCcEEEEeCCCceeeEEec------cCceeeEEEEEeCCEE-EEecCCCcEEEEEcccCccceeEEeeccccccceeee
Q 018591           34 QGKDIIVWQQPDLRMFTKFG------HGDGSVKAVVTVGNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGK  106 (353)
Q Consensus        34 ~dg~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  106 (353)
                      .++.|.++|.++++....+.      ........+.++++.+ ++...++.|.+||..+.+     .+..+         
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~-----~~~~i---------   80 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK-----EVGRI---------   80 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC-----EEEEE---------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE-----EEEEc---------
Confidence            37899999999998765542      1123456777885554 455567899999998876     22222         


Q ss_pred             ecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEec-CCCcEEEEEcCCceeeeeccccC-----cceEEEEEeCC
Q 018591          107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGS-WDKTLKVWRVADLKCLESIKAHD-----DAVNGLVASKG  179 (353)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~  179 (353)
                                         ........+++++ +.++++. .++.|.+||..+++....+....     .....+++.++
T Consensus        81 -------------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~  141 (328)
T 3dsm_A           81 -------------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGK  141 (328)
T ss_dssp             -------------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETT
T ss_pred             -------------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECC
Confidence                               1224566788855 5666665 78999999999998877665322     14556777677


Q ss_pred             eEEEEc--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC----------CcEEEeeccccc
Q 018591          180 IVYSAS--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD----------GFVMGWEGNVEI  247 (353)
Q Consensus       180 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~  247 (353)
                      .++++.  .++.|.++|..+++     ....+.... .+ ..++++|+|+++++...+          +.|.++|..+.+
T Consensus       142 ~lyv~~~~~~~~v~viD~~t~~-----~~~~i~~g~-~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~  214 (328)
T 3dsm_A          142 YVYVNCWSYQNRILKIDTETDK-----VVDELTIGI-QP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT  214 (328)
T ss_dssp             EEEEEECTTCCEEEEEETTTTE-----EEEEEECSS-CB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred             EEEEEcCCCCCEEEEEECCCCe-----EEEEEEcCC-Cc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe
Confidence            666665  48899999999886     444444322 33 789999999877777655          789999998773


Q ss_pred             cceeeeeecc-ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEc-
Q 018591          248 VRWKLACETK-AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSG-  325 (353)
Q Consensus       248 ~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~-  325 (353)
                      .....  ... +....-.++++++++|+++..  .|.+||..+++.. ....+..+......++++|+   ++.++++. 
T Consensus       215 v~~~~--~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~-~~~~~~~~~~~p~gi~vdp~---~g~lyva~~  286 (328)
T 3dsm_A          215 VEKQF--KFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP-VRPFLEFRDTKYYGLTVNPN---NGEVYVADA  286 (328)
T ss_dssp             EEEEE--ECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC-SSCSBCCCSSCEEEEEECTT---TCCEEEEEC
T ss_pred             EEEEE--ecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee-eeeeecCCCCceEEEEEcCC---CCeEEEEcc
Confidence            22111  111 222334455556788877655  8999999876631 11112222457899999995   16677776 


Q ss_pred             ---cCCCeEEEEEcCCCCCccccc
Q 018591          326 ---SLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       326 ---~~dg~i~iw~~~~~~~~~~~~  346 (353)
                         ..++.|.+|+.. ++.+.+.+
T Consensus       287 ~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          287 IDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             TTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             cccccCCEEEEECCC-CCEEEEEE
Confidence               678999999998 77665543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=2.7e-16  Score=140.36  Aligned_cols=288  Identities=10%  Similarity=0.042  Sum_probs=175.7

Q ss_pred             eeeeeCccCceEEEEECCcEE--EEE--eCCCcEEEEeCCCceeeEEeccCceeeE---------EEEEe----CCE-EE
Q 018591            9 LAVLSGHVGSVSSLALCGEFI--LSA--SQGKDIIVWQQPDLRMFTKFGHGDGSVK---------AVVTV----GNK-VF   70 (353)
Q Consensus         9 ~~~l~~h~~~v~~~~~~~~~l--~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~---------~~~~~----~~~-l~   70 (353)
                      ...+.+|...|..++++++.+  ++.  +.++...||....+.....+..+...+.         ...|+    ++. |+
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            345778999999999986543  334  3478999999655555566666655544         44343    676 66


Q ss_pred             EecC-CCcEEEEEcc--c-CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe
Q 018591           71 TAHQ-DSRIRVWKVS--R-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG  144 (353)
Q Consensus        71 s~~~-dg~i~~w~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~  144 (353)
                      .++. +..|.+|++.  . +..   ..+...+.                         ..|...+..++|+|  +.|+++
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~---~~l~~~~~-------------------------~~~~~~~~~~~~spDg~~l~~~  147 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVP---RPLTPVSA-------------------------VGGGLRWADPVLLPERGEVWCM  147 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCC---EECSCCCC-------------------------STTCEEEEEEEEETTTTEEEEE
T ss_pred             EEECCCCeEEEEcCCCCCCCCC---EeccCCcc-------------------------CCCCccccCcEECCCCCEEEEE
Confidence            5443 5566666654  2 221   11110000                         01556788999999  678888


Q ss_pred             cCC----------CcEEEEEcCC------ceeeeecc-ccCcceEEEEEeCC--eEEEEcCC--------CcEEEEeCC-
Q 018591          145 SWD----------KTLKVWRVAD------LKCLESIK-AHDDAVNGLVASKG--IVYSASAD--------GKIKAWGKE-  196 (353)
Q Consensus       145 ~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~v~~i~~~~~--~l~~~~~d--------g~i~iwd~~-  196 (353)
                      +.+          ..|++||+.+      ++.. .+. .+...+..++|+++  .|+.++.+        ..|++||+. 
T Consensus       148 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~  226 (662)
T 3azo_A          148 AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE  226 (662)
T ss_dssp             EEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT
T ss_pred             EecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC
Confidence            776          5899999987      5543 444 55567788888443  67766644        379999998 


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--cEEEeeccccccceeeeeeccccc----------eeEE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--FVMGWEGNVEIVRWKLACETKAHE----------MAVL  264 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~----------~~v~  264 (353)
                      ++..  .........+.... ..++|+|||++++++..++  .|.+||..++..  .  .....+.          ....
T Consensus       227 ~g~~--~~~~~l~~~~~~~~-~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~--~--~l~~~~~~~~~p~w~~~~~~~  299 (662)
T 3azo_A          227 DGRF--ADTRTLLGGPEEAI-AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA--T--QLCRREEEFAGPLWTPGMRWF  299 (662)
T ss_dssp             TSCE--EEEEEEEEETTBCE-EEEEECTTSCEEEEECTTSSCEEEEECTTTCCE--E--ESSCCSSBSSCCCCSTTCCSE
T ss_pred             CCcc--cccEEeCCCCCceE-cceEECCCCeEEEEECCCCCeEEEEEECCCCce--e--ecccccccccCccccccCceE
Confidence            4510  01333333334444 8999999999888888888  555566544421  1  1111111          1123


Q ss_pred             EEEEcCcEEEEecCCCeEEEEe--cCCCcceEEeccccCCCcCeEEE-EeecCCCCCCeEEEEccCCCe--EEEEEcCCC
Q 018591          265 CVCLVGEFLCSGSADKSIGIWK--REAFGKLCRVGAITGHEGPVKCL-QASPNAVGGGFLLYSGSLDKS--LRVWWVSKQ  339 (353)
Q Consensus       265 ~~~~~~~~l~~~~~dg~i~iw~--~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~  339 (353)
                      .+.+++++++++.. +.++||.  ..+++    +..+..|...+..+ +++++    .-++++++.+..  |.+|++.++
T Consensus       300 ~~~~~~~~~~~~~~-~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~s~~~~----~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          300 APLANGLIAVVHGK-GAAVLGILDPESGE----LVDAAGPWTEWAATLTVSGT----RAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             EECTTSCEEEEEBS-SSCEEEEEETTTTE----EEECCSSCCEEEEEEEEETT----EEEEEEEETTEEEEEEEEETTTC
T ss_pred             eEeCCCEEEEEEEc-CccEEEEEECCCCc----EEEecCCCCeEEEEEecCCC----EEEEEEcCCCCCCEEEEEECCCC
Confidence            34446888999988 9999994  44432    44566677778777 55544    445555666654  555566565


Q ss_pred             CC
Q 018591          340 SS  341 (353)
Q Consensus       340 ~~  341 (353)
                      +.
T Consensus       371 ~~  372 (662)
T 3azo_A          371 RA  372 (662)
T ss_dssp             CE
T ss_pred             ce
Confidence            43

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=1e-15  Score=125.85  Aligned_cols=264  Identities=11%  Similarity=0.068  Sum_probs=173.4

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccC------ceeeEEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHG------DGSVKAVVT   64 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~------~~~v~~~~~   64 (353)
                      ..+++.+.++..+..+  .++|+  +++++++.          .++.|.+||..+++.+..+...      ......+++
T Consensus        38 ~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~  115 (361)
T 2oiz_A           38 YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQ  115 (361)
T ss_dssp             TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEE
T ss_pred             CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEE
Confidence            4577888888887776  88996  88888876          3678999999999988887532      234456777


Q ss_pred             e--CCEEEEecC--CCcEEEEEcccCccceeEEeec-cccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-
Q 018591           65 V--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDT-LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-  138 (353)
Q Consensus        65 ~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  138 (353)
                      +  +++|+++..  ++.|.+||+++++     .+.. ++.                            .. ...+.+.| 
T Consensus       116 spdg~~l~v~n~~~~~~v~v~d~~~~~-----~~~~~i~~----------------------------~~-~~~v~~~p~  161 (361)
T 2oiz_A          116 TTDGKFIVLQNASPATSIGIVDVAKGD-----YVEDVTAA----------------------------AG-CWSVIPQPN  161 (361)
T ss_dssp             CTTSSEEEEEEESSSEEEEEEETTTTE-----EEEEEGGG----------------------------TT-EEEEEECTT
T ss_pred             CCCCCEEEEECCCCCCeEEEEECCCCc-----EEEEEecC----------------------------CC-cceeEEcCC
Confidence            6  888888763  5799999998875     3333 221                            11 11133444 


Q ss_pred             --CeEEEecCCCcEEEEEcCC-ceee------eeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee
Q 018591          139 --GLIYSGSWDKTLKVWRVAD-LKCL------ESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI  208 (353)
Q Consensus       139 --~~l~~~~~dg~v~iwd~~~-~~~~------~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  208 (353)
                        ..+++.+.||.+.+|++.. ++..      ..+.....++....- .+..++..+.++.+.++|+......   ....
T Consensus       162 ~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~---~~~~  238 (361)
T 2oiz_A          162 RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVK---VDGP  238 (361)
T ss_dssp             SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCE---EEEE
T ss_pred             CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCce---eccc
Confidence              4677888899999999864 4443      122222222211111 2346666678899999998765411   1111


Q ss_pred             eec------cC----CceeeEEEEcCCCCeEEeecC-----------CCcEEEeeccccccceeeeeeccccceeEEEEE
Q 018591          209 LEG------HK----DVSLNSVVVSDDGKWVYGGGS-----------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC  267 (353)
Q Consensus       209 ~~~------~~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  267 (353)
                      +..      ..    ... ..++++|+++.++++..           .+.|.+||+.+.    +....+..+...-..++
T Consensus       239 ~~~~~~~~~~~~~~p~g~-~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----~~v~~i~~~~p~~ia~s  313 (361)
T 2oiz_A          239 WSLLNDEDKAKNWVPGGY-NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----QRVARIPGRDALSMTID  313 (361)
T ss_dssp             EESCCHHHHHTTCEECCS-SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----EEEEEEECTTCCEEEEE
T ss_pred             ccccCccccccccccCCe-eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----cEEEEEecCCeeEEEEC
Confidence            110      00    111 34789999888777543           347999999988    34444444334455667


Q ss_pred             EcCcEEEEecCCCeEEEEecCCC--cceEEeccccCCCcCeEEEEeecC
Q 018591          268 LVGEFLCSGSADKSIGIWKREAF--GKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       268 ~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ++|++|++++. +.|.+||..++  +   .+..+..+......++++|+
T Consensus       314 pdg~~l~v~n~-~~v~v~D~~t~~l~---~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          314 QQRNLMLTLDG-GNVNVYDISQPEPK---LLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             TTTTEEEEECS-SCEEEEECSSSSCE---EEEEETTSCSSEEEEEECCC
T ss_pred             CCCCEEEEeCC-CeEEEEECCCCcce---eeEEeccCCCCcEEEEecCC
Confidence            78999998887 99999999997  6   55665566677889999998

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=4.2e-15  Score=118.47  Aligned_cols=238  Identities=12%  Similarity=0.115  Sum_probs=154.3

Q ss_pred             CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591           55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS  132 (353)
Q Consensus        55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  132 (353)
                      +-....+++++  +..+++...++.|.+||.+...      +..+.....                     -.++...+.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~------~~~~~~~~~---------------------~~~~~~~p~   80 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF------KFQFGECGK---------------------RDSQLLYPN   80 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE------EEEECCBSS---------------------STTCBSSEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE------EEEecccCC---------------------CcccccCce
Confidence            34567778887  6666777788899999976321      111110000                     003445678


Q ss_pred             EEEEe-C-CeEEEecC--CCcEEEEEcCCceeeeeccc-cCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccc
Q 018591          133 CLTVY-N-GLIYSGSW--DKTLKVWRVADLKCLESIKA-HDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSL  205 (353)
Q Consensus       133 ~~~~~-~-~~l~~~~~--dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~  205 (353)
                      .+++. + +.++++..  ++.|.+|| .+++.+..+.. +...+.++++ +++ .+++...++.|.+||....      .
T Consensus        81 ~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~  153 (286)
T 1q7f_A           81 RVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------V  153 (286)
T ss_dssp             EEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------E
T ss_pred             EEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC------E
Confidence            88984 4 55555553  78999999 56776666532 3456889999 333 5556667889999996533      2


Q ss_pred             eeeee--ccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeec--cccceeEEEEE--EcCcEEEEecCC
Q 018591          206 KGILE--GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACET--KAHEMAVLCVC--LVGEFLCSGSAD  279 (353)
Q Consensus       206 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~--~~~~~l~~~~~d  279 (353)
                      ...+.  .+...+ ..++++|+++++++...++.|++||....     ....+  .++......++  ++|+++++...+
T Consensus       154 ~~~~~~~~~~~~p-~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~  227 (286)
T 1q7f_A          154 LHKFGCSKHLEFP-NGVVVNDKQEIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNGEILIADNHN  227 (286)
T ss_dssp             EEEEECTTTCSSE-EEEEECSSSEEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEECTTCCEEEEECSS
T ss_pred             EEEeCCCCccCCc-EEEEECCCCCEEEEECCCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEECCCCCEEEEeCCC
Confidence            33332  233344 89999999998888888999999997543     11222  12123344444  458888888777


Q ss_pred             C-eEEEEecCCCcceEEeccccCC--CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          280 K-SIGIWKREAFGKLCRVGAITGH--EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       280 g-~i~iw~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      + .|.+||.. ++.   +..+..+  ...+.+++++|+    ++++++ +.|+.|++|++....+
T Consensus       228 ~~~i~~~~~~-g~~---~~~~~~~~~~~~~~~i~~~~~----g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          228 NFNLTIFTQD-GQL---ISALESKVKHAQCFDVALMDD----GSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             SCEEEEECTT-SCE---EEEEEESSCCSCEEEEEEETT----TEEEEE-ETTTEEEEEECSCCCC
T ss_pred             CEEEEEECCC-CCE---EEEEcccCCCCcceeEEECCC----CcEEEE-CCCCeEEEEEcccccc
Confidence            6 99999964 342   3333323  234789999999    888777 5699999999876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=6.1e-16  Score=126.93  Aligned_cols=248  Identities=12%  Similarity=0.060  Sum_probs=154.7

Q ss_pred             CCCCceeeeeeCcc-CceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccC------ceeeEEEEEe--CCEEE
Q 018591            3 CKSHRSLAVLSGHV-GSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHG------DGSVKAVVTV--GNKVF   70 (353)
Q Consensus         3 ~~~~~~~~~l~~h~-~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~--~~~l~   70 (353)
                      ..+++.+..+..+. ..+..++|+  ++++ +++..++.|.+||+.+++....+..+      ...+..++|+  +++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  107 (349)
T 1jmx_B           28 VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY  107 (349)
T ss_dssp             TTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred             CCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEE
Confidence            45677777777553 257888896  6654 55667899999999999988777532      2336788887  77888


Q ss_pred             EecCC------------CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591           71 TAHQD------------SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN  138 (353)
Q Consensus        71 s~~~d------------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  138 (353)
                      +++.+            +.|.+||+.+++....  +..                           + .+...+.+++|++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~---------------------------~-~~~~~~~~~~~s~  157 (349)
T 1jmx_B          108 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRT---------------------------F-PMPRQVYLMRAAD  157 (349)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEE---------------------------E-ECCSSCCCEEECT
T ss_pred             EEcccccccccccccCCCeEEEEECCCccccce--eee---------------------------c-cCCCcccceeECC
Confidence            88865            8999999987542110  000                           0 2334578889998


Q ss_pred             -CeEEEecCCCcEEEEEcCCceeeeeccccCc------------------------ceEEEEEeCC---eEEEEcCCCcE
Q 018591          139 -GLIYSGSWDKTLKVWRVADLKCLESIKAHDD------------------------AVNGLVASKG---IVYSASADGKI  190 (353)
Q Consensus       139 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------~v~~i~~~~~---~l~~~~~dg~i  190 (353)
                       ..+++++.  .|.+||+.+++.+..+..+..                        ....+++.++   ..........+
T Consensus       158 dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          158 DGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             TSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             CCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence             33666543  499999999887776643320                        1223333211   00000000112


Q ss_pred             EEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc
Q 018591          191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV  269 (353)
Q Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (353)
                      ..+|..+++..    .......... +..++++| ++++++++  ++.|.+||+.+++......   ..+.....+++++
T Consensus       236 ~~~~~~~~~~~----~~~~~~~~~~-~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~s~d  305 (349)
T 1jmx_B          236 LSVDLKTGKTH----TQEFADLTEL-YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---LDHTYYCVAFDKK  305 (349)
T ss_dssp             EEEETTTCCEE----EEEEEECSSC-EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECSS
T ss_pred             EEEeccCCcEE----ecccccCCCc-ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc---CCCCccceEECCC
Confidence            22444444310    1111112233 38999999 99999988  8899999998873222211   1223334556667


Q ss_pred             CcEEEEecCCCeEEEEecCCCcc
Q 018591          270 GEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       270 ~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      +++|++++.++.|++||..+++.
T Consensus       306 g~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          306 GDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             SSCEEEESBSSEEEEEETTTTEE
T ss_pred             CCEEEEecCCCeEEEEeccccce
Confidence            88888888899999999998763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=1.5e-14  Score=115.19  Aligned_cols=232  Identities=15%  Similarity=0.197  Sum_probs=152.7

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc------CceeeEEEEEe--CCEEEEecC--CCcEEEE
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH------GDGSVKAVVTV--GNKVFTAHQ--DSRIRVW   81 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~------~~~~v~~~~~~--~~~l~s~~~--dg~i~~w   81 (353)
                      +|-....+++++  ++++++...++.|.+||.. ++.+..+..      +...+..++++  +..++.+..  ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            455689999996  7788888889999999976 666666632      34567888884  445555443  7899999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCce
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      +.+ +.     .+..+..                          .+...+.++++++  +++++...++.|.+||. +++
T Consensus       106 d~~-g~-----~~~~~~~--------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  152 (286)
T 1q7f_A          106 NQY-GQ-----FVRKFGA--------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGN  152 (286)
T ss_dssp             CTT-SC-----EEEEECT--------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC
T ss_pred             CCC-Cc-----EEEEecC--------------------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCC
Confidence            943 33     1111110                          2334678899988  56666667889999996 455


Q ss_pred             eeeecc--ccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeecc--CCceeeEEEEcCCCCeEEeec
Q 018591          160 CLESIK--AHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGH--KDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       160 ~~~~~~--~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~  233 (353)
                      .+..+.  .+...+.++++. ++ .+++...++.|++||....      ....+...  ...+ ..++++++++++++..
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~~~p-~~i~~d~~G~l~v~~~  225 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGITNYP-IGVGINSNGEILIADN  225 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTSCSE-EEEEECTTCCEEEEEC
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCccCCC-cEEEECCCCCEEEEeC
Confidence            555553  344568899994 34 5555567899999997543      23333322  2344 8999999999888887


Q ss_pred             CCC-cEEEeeccccccceeeeeeccccceeE--EEEEEcCcEEEEecCCCeEEEEecCCC
Q 018591          234 SDG-FVMGWEGNVEIVRWKLACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       234 ~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .++ .|.+||.... .......  ......+  .++.++|+++++ +.++.|++|++...
T Consensus       226 ~~~~~i~~~~~~g~-~~~~~~~--~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          226 HNNFNLTIFTQDGQ-LISALES--KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             SSSCEEEEECTTSC-EEEEEEE--SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCEEEEEECCCCC-EEEEEcc--cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            776 9999996543 1111111  1111123  444556877666 57999999998653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=5.4e-15  Score=120.56  Aligned_cols=264  Identities=10%  Similarity=0.052  Sum_probs=164.5

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      ..|.+++|+  +..++..+.++.++.|   .++....+..+...+.+++|+  ++.++++..++.|.+||.++++.... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~-   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-
Confidence            457778886  5566666788999999   455666666666677889997  66666788889999999877652111 


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC----CcEEEEEcCCceeeeecc-
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD----KTLKVWRVADLKCLESIK-  165 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d----g~v~iwd~~~~~~~~~~~-  165 (353)
                                                     ...+...+.++++++  .++++...+    +.|.+||..+++....+. 
T Consensus        82 -------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~  130 (333)
T 2dg1_A           82 -------------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED  130 (333)
T ss_dssp             -------------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS
T ss_pred             -------------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc
Confidence                                           013446789999988  445554454    589999988766543332 


Q ss_pred             -ccCcceEEEEE-eCCeEEEEcC-------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCC
Q 018591          166 -AHDDAVNGLVA-SKGIVYSASA-------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSD  235 (353)
Q Consensus       166 -~~~~~v~~i~~-~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d  235 (353)
                       .+...+.++++ +++.++.+..       .+.|..+|...++     ... +......+ ..++|+|+++.++ +...+
T Consensus       131 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-----~~~-~~~~~~~~-~~i~~~~dg~~l~v~~~~~  203 (333)
T 2dg1_A          131 LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-----VTP-IIQNISVA-NGIALSTDEKVLWVTETTA  203 (333)
T ss_dssp             SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-----EEE-EEEEESSE-EEEEECTTSSEEEEEEGGG
T ss_pred             CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-----EEE-eecCCCcc-cceEECCCCCEEEEEeCCC
Confidence             23457889999 4444444443       3556667765544     222 21222233 8899999998654 45567


Q ss_pred             CcEEEeecccc-cccee----eeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccc---cCCCcC
Q 018591          236 GFVMGWEGNVE-IVRWK----LACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAI---TGHEGP  305 (353)
Q Consensus       236 g~i~i~d~~~~-~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~h~~~  305 (353)
                      +.|.+|+.... .....    ......++ ..+..+.+  +|+++++...++.|.+||.. ++....+...   .+|...
T Consensus       204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~  281 (333)
T 2dg1_A          204 NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLR  281 (333)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCB
T ss_pred             CeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccC
Confidence            89999998642 11111    11111121 23344444  57877777778999999984 4432222111   122236


Q ss_pred             eEEEEeecCCCCCCeEEEEccCC
Q 018591          306 VKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       306 v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                      +.+++|+|+    +..|+.++.+
T Consensus       282 ~~~~~~~~d----g~~L~v~~~~  300 (333)
T 2dg1_A          282 STHPQFIPG----TNQLIICSND  300 (333)
T ss_dssp             CCEEEECTT----SCEEEEEEEC
T ss_pred             cceEEECCC----CCEEEEEeCc
Confidence            899999998    7666655544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=8.6e-15  Score=120.86  Aligned_cols=247  Identities=13%  Similarity=0.135  Sum_probs=151.3

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCC-CceeeEEeccC-ceeeEEEEEe--CCE--EEEec-------------
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQP-DLRMFTKFGHG-DGSVKAVVTV--GNK--VFTAH-------------   73 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~-~~~~~~~~~~~-~~~v~~~~~~--~~~--l~s~~-------------   73 (353)
                      +...+..++|+  +++|++++.+ .|.+|++. +++........ .+....++++  +++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34468889996  8889999888 99999987 77765433211 1223445665  553  44553             


Q ss_pred             CCCcEEEEEccc-CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCc
Q 018591           74 QDSRIRVWKVSR-SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKT  149 (353)
Q Consensus        74 ~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~  149 (353)
                      .+|.+.+|+++. ++..  ..+...+                          ..+...+.+++|+|  ++++++. .++.
T Consensus       117 ~~g~v~v~~~~~~g~~~--~~~~~~~--------------------------~~~~~~~~~~~~spdG~~l~~~~~~~~~  168 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLE--KNVQNYE--------------------------YQENTGIHGMVFDPTETYLYSADLTANK  168 (365)
T ss_dssp             SCCEEEEEEECTTCCEE--EEEEEEE--------------------------CCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCceEEEEccCCCCcCc--ceEeeEE--------------------------eCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence            688999999974 3210  1111000                          02456788999999  5666654 4689


Q ss_pred             EEEEEcC-Cceee--eecc--ccCcceEEEEEeC-C-eEEEEc-CCCcEEEEeCC--CCCccc-ccceeeeec----cCC
Q 018591          150 LKVWRVA-DLKCL--ESIK--AHDDAVNGLVASK-G-IVYSAS-ADGKIKAWGKE--LGKSHC-HSLKGILEG----HKD  214 (353)
Q Consensus       150 v~iwd~~-~~~~~--~~~~--~~~~~v~~i~~~~-~-~l~~~~-~dg~i~iwd~~--~~~~~~-~~~~~~~~~----~~~  214 (353)
                      |++||+. +++..  ..+.  .|...+..++|++ + .+++++ .++.|.+|++.  +++... ......+..    +..
T Consensus       169 v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~  248 (365)
T 1jof_A          169 LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP  248 (365)
T ss_dssp             EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCT
T ss_pred             EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccc
Confidence            9999998 66543  3333  2356789999944 3 566555 47899999875  343100 000111111    111


Q ss_pred             -----ceeeEEE-EcCCCCeEEeecCCC------cEEEeecc-ccccceee-eeeccccceeEEEEEE---cCcEEEEec
Q 018591          215 -----VSLNSVV-VSDDGKWVYGGGSDG------FVMGWEGN-VEIVRWKL-ACETKAHEMAVLCVCL---VGEFLCSGS  277 (353)
Q Consensus       215 -----~~v~~~~-~~~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~-~~~~~~~~~~v~~~~~---~~~~l~~~~  277 (353)
                           ..+..++ |+|+|++|+++..+.      .|.+|++. ++...... ..........-.++++   +|++|++++
T Consensus       249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence                 0248899 999999988765432      79999986 34211100 0111111233456788   799999887


Q ss_pred             C-CCeEEEEecCCC
Q 018591          278 A-DKSIGIWKREAF  290 (353)
Q Consensus       278 ~-dg~i~iw~~~~~  290 (353)
                      . ++.|.+|+++..
T Consensus       329 ~~~~~v~v~~~~~~  342 (365)
T 1jof_A          329 DQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSSCEEEEEEEETT
T ss_pred             cCCCeEEEEEEchh
Confidence            6 489999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=2e-14  Score=116.80  Aligned_cols=226  Identities=8%  Similarity=0.003  Sum_probs=146.1

Q ss_pred             CCCcEEEEeCCCceeeEEec-cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccc
Q 018591           34 QGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQ  110 (353)
Q Consensus        34 ~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (353)
                      .++.|.+||..+++.+..+. .+-.....++++  ++.+++...++.|++|+.+...... ..+.......         
T Consensus        67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~-~~~~~~~~~g---------  136 (329)
T 3fvz_A           67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPL-LILGRSMQPG---------  136 (329)
T ss_dssp             CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCS-EEESBTTBCC---------
T ss_pred             cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEE-EEecccCCCC---------
Confidence            35789999999899887765 334567888887  7777888888999999986542111 1111000000         


Q ss_pred             ceeEeecccceeeeeecCCceEEEEEeC---CeEEEec-CCCcEEEEEcCCceeeeecccc----------CcceEEEEE
Q 018591          111 SNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGS-WDKTLKVWRVADLKCLESIKAH----------DDAVNGLVA  176 (353)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~----------~~~v~~i~~  176 (353)
                                  .-.++......+++++   .++++.+ .++.|++|| .+++.+..+...          -.....+++
T Consensus       137 ------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~  203 (329)
T 3fvz_A          137 ------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLAL  203 (329)
T ss_dssp             ------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEE
T ss_pred             ------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEE
Confidence                        0003445678999987   4455554 589999999 567777666422          234788999


Q ss_pred             e-C-C-eEEEEcCCCcEEEEeCCCCCcccccceeeee--ccCCceeeEEEEcC------CCCeEEeecCCCcEEEeeccc
Q 018591          177 S-K-G-IVYSASADGKIKAWGKELGKSHCHSLKGILE--GHKDVSLNSVVVSD------DGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       177 ~-~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~  245 (353)
                      . + + .+++...++.|++||..+++     ....+.  .+...+ ..++++|      +++..++...+..|++|+..+
T Consensus       204 d~~~g~l~v~d~~~~~I~~~~~~~G~-----~~~~~~~~~~~~~~-~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          204 VPHLDQLCVADRENGRIQCFKTDTKE-----FVREIKHASFGRNV-FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCC-----EEEEECCTTTTTCE-EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCc-----EEEEEeccccCCCc-ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence            3 3 4 66666778899999998776     444442  233334 7888988      454444555566899999888


Q ss_pred             cccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEEEEecCC
Q 018591          246 EIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       246 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      +.....+. ....+......+  +++|.++++...++.|++|++..
T Consensus       278 g~~~~~~~-~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          278 GEIIDVFK-PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCEEEEEC-CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CeEEEEEc-CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            73222211 112333334444  44587888888999999999764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=2.3e-15  Score=135.78  Aligned_cols=275  Identities=11%  Similarity=0.042  Sum_probs=166.4

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----eEEEEEe--CCEEEEecCC---------Cc
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----VKAVVTV--GNKVFTAHQD---------SR   77 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~d---------g~   77 (353)
                      .....+++|+  +++++++  ||+|++||+.+++....+.+|...     ...+.|+  +++|+.++.+         +.
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            3446688995  7788886  899999999999988888777532     2235666  8888888876         56


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~  155 (353)
                      +.+||+.+++..      .                           +..|...+...+|+|  +.|+.+ .++.|++||+
T Consensus        94 ~~~~d~~~~~~~------~---------------------------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~  139 (740)
T 4a5s_A           94 YDIYDLNKRQLI------T---------------------------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE  139 (740)
T ss_dssp             EEEEETTTTEEC------C---------------------------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred             EEEEECCCCcEE------E---------------------------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence            779999887511      1                           114667899999999  667666 5789999999


Q ss_pred             CCceeeee-ccccCcce-----------------EEEEEeCC--eEEEEcCCC---------------------------
Q 018591          156 ADLKCLES-IKAHDDAV-----------------NGLVASKG--IVYSASADG---------------------------  188 (353)
Q Consensus       156 ~~~~~~~~-~~~~~~~v-----------------~~i~~~~~--~l~~~~~dg---------------------------  188 (353)
                      .+++..+. ..++...+                 ..+.|+++  .|+.++.|.                           
T Consensus       140 ~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp  219 (740)
T 4a5s_A          140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP  219 (740)
T ss_dssp             TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred             CCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence            88765442 22222222                 24778443  566654221                           


Q ss_pred             ---------cEEEEeCCC---CCcccccceeeee-----ccCCceeeEEEEcCCCCeEEeec----CCCcEEEeeccccc
Q 018591          189 ---------KIKAWGKEL---GKSHCHSLKGILE-----GHKDVSLNSVVVSDDGKWVYGGG----SDGFVMGWEGNVEI  247 (353)
Q Consensus       189 ---------~i~iwd~~~---~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~  247 (353)
                               +|++||+.+   ++..  .......     ++... +..++|+|||+.++...    .+..|.+||+.++.
T Consensus       220 ~~G~~~~~~~l~v~d~~~~~~~~~~--~~~~l~~~~~~~~~~~~-~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          220 KAGAVNPTVKFFVVNTDSLSSVTNA--TSIQITAPASMLIGDHY-LCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             BTTSCCCEEEEEEEETTSCCSSSCC--CEEEECCCHHHHTSCEE-EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCcCcCCeeEEEEEECCCCCCCCcc--eEEEecCCccCCCCCeE-EEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                     477788877   5200  0111111     23333 48999999999666543    33479999998874


Q ss_pred             cceeee--eec--ccccee-------EEEEEEcCcEEE-Eec-CC--CeEEEEecCCCcceEEeccccCCCcCeEEEEee
Q 018591          248 VRWKLA--CET--KAHEMA-------VLCVCLVGEFLC-SGS-AD--KSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS  312 (353)
Q Consensus       248 ~~~~~~--~~~--~~~~~~-------v~~~~~~~~~l~-~~~-~d--g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~  312 (353)
                      ..+.+.  ..+  ..+...       -..++++|+.|+ ..+ .+  ..|++||..+++.    ..+......+..+.. 
T Consensus       297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----~~lT~g~~~v~~~~~-  371 (740)
T 4a5s_A          297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC----TFITKGTWEVIGIEA-  371 (740)
T ss_dssp             TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----EESCCSSSCEEEEEE-
T ss_pred             cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----EecccCCEEEEEEEE-
Confidence            110011  111  122211       235677888766 554 33  4688888876542    223333445665542 


Q ss_pred             cCCCCCCeEEEEccC----CCeEEEEEcC
Q 018591          313 PNAVGGGFLLYSGSL----DKSLRVWWVS  337 (353)
Q Consensus       313 ~~~~~~~~~l~s~~~----dg~i~iw~~~  337 (353)
                      ++   ++.++++++.    .+...||.+.
T Consensus       372 ~d---~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          372 LT---SDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             EC---SSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             Ee---CCEEEEEEecCCCCCceeEEEEEE
Confidence            44   1556666655    2445555443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=2.2e-14  Score=127.99  Aligned_cols=277  Identities=10%  Similarity=0.038  Sum_probs=169.8

Q ss_pred             eeeeeCccCceE---------EEEEC----CcE-EEEEeC-CCcEEEEeCC--C-ceeeEEecc-----CceeeEEEEEe
Q 018591            9 LAVLSGHVGSVS---------SLALC----GEF-ILSASQ-GKDIIVWQQP--D-LRMFTKFGH-----GDGSVKAVVTV   65 (353)
Q Consensus         9 ~~~l~~h~~~v~---------~~~~~----~~~-l~s~~~-dg~v~vwd~~--~-~~~~~~~~~-----~~~~v~~~~~~   65 (353)
                      ...+..|...+.         ...|+    |+. |+.++. +..|.+|++.  . ++ ...+..     |...+..++|+
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEEC
Confidence            455666665655         45443    777 665543 5677777765  2 44 444544     67788899998


Q ss_pred             --CCEEEEecCC----------CcEEEEEccc------CccceeEEeeccccccceeeeecccceeEeecccceeeee-e
Q 018591           66 --GNKVFTAHQD----------SRIRVWKVSR------SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI-E  126 (353)
Q Consensus        66 --~~~l~s~~~d----------g~i~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  126 (353)
                        ++.|+.++.+          ..|++||+++      +..                                 ..+. .
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------------------~~l~~~  185 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV---------------------------------RELSDD  185 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS---------------------------------EESSCS
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce---------------------------------eEEEec
Confidence              7889888876          5899999877      331                                 1111 2


Q ss_pred             cCCceEEEEEeC--CeEEEecCC--------CcEEEEEcC-Cc---eeeeeccccCcceEEEEEeC-C-eEEEEcCCC--
Q 018591          127 HADSISCLTVYN--GLIYSGSWD--------KTLKVWRVA-DL---KCLESIKAHDDAVNGLVASK-G-IVYSASADG--  188 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~~~d--------g~v~iwd~~-~~---~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg--  188 (353)
                      +...+..+.|+|  +.|+.++.+        ..|++||+. ++   +.......+...+..+.|++ + +++++..++  
T Consensus       186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~  265 (662)
T 3azo_A          186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWW  265 (662)
T ss_dssp             CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred             CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence            334667788998  677776644        379999998 56   44444445578899999943 3 667777778  


Q ss_pred             cEEEEeCCCCCcccccceeeeeccCCc-------eeeEEEEcCCCCeEEeecCCCcEEEee--ccccccceeeeeecccc
Q 018591          189 KIKAWGKELGKSHCHSLKGILEGHKDV-------SLNSVVVSDDGKWVYGGGSDGFVMGWE--GNVEIVRWKLACETKAH  259 (353)
Q Consensus       189 ~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~~~~~~  259 (353)
                      .|.+||..+++     .......+...       .+..++|+|++++++++.. +.+++|.  ...+.     ...+..+
T Consensus       266 ~l~~~~~~~~~-----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-----~~~l~~~  334 (662)
T 3azo_A          266 NLHRVDPATGA-----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-----LVDAAGP  334 (662)
T ss_dssp             EEEEECTTTCC-----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-----EEECCSS
T ss_pred             EEEEEECCCCc-----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-----EEEecCC
Confidence            66677765554     22222222211       0367899999999999998 9999994  44441     2334455


Q ss_pred             ceeEEEE-EEcCcEE--EEecCCC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          260 EMAVLCV-CLVGEFL--CSGSADK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       260 ~~~v~~~-~~~~~~l--~~~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                      ...+..+ +++++.+  ++++.+.  .|.++|+.+++. ..+  ...+...+....+.+.    ..+.+.+..+..|..|
T Consensus       335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~l--~~~~~~~~~~~~~~~~----~~~~~~~~dg~~i~~~  407 (662)
T 3azo_A          335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA-RTI--GARHTDPVDPAYYPEP----QIRTFTAPDGREIHAH  407 (662)
T ss_dssp             CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE-EEE--ESCCCCSSCGGGSCCC----EEEEEECTTSCEEEEE
T ss_pred             CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce-EEe--ecCCcccCCccccCcc----eEEEEEcCCCCEEEEE
Confidence            5666677 7776533  3444454  455556666542 122  2233333444444444    4455555445567776


Q ss_pred             EcC
Q 018591          335 WVS  337 (353)
Q Consensus       335 ~~~  337 (353)
                      -..
T Consensus       408 ~~~  410 (662)
T 3azo_A          408 IYP  410 (662)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=4.5e-12  Score=101.48  Aligned_cols=275  Identities=8%  Similarity=0.018  Sum_probs=174.3

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe--CCEEEEecCCCcEEEEEccc
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~   85 (353)
                      .+..+...+.+++++  |+++++...++.|.+||.. ++..... ..+...+.+++++  +...++...++.|..|+.+ 
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            344566789999996  6666666667899999987 5543322 3345678889887  5666666667889999875 


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-  162 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-  162 (353)
                      +.   ..... ++                           .....+.++.+.+  .++++...++.|..||. +++... 
T Consensus        87 g~---~~~~~-~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~  134 (299)
T 2z2n_A           87 GI---IKEYT-LP---------------------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY  134 (299)
T ss_dssp             SC---EEEEE-CS---------------------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE
T ss_pred             Cc---EEEEe-CC---------------------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe
Confidence            22   11111 10                           1334677888887  44555556789999998 544432 


Q ss_pred             eccccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          163 SIKAHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      ........+..+++. ++ .+++...++.|..||. +++     .... .......+ ..+++++++++.++...++.|.
T Consensus       135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~-~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD-----ITEFKIPTPASGP-VGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCE-EEEEECTTSSEEEEETTTTEEE
T ss_pred             cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc-----EEEeeCCCCCCcc-eeEEECCCCCEEEEccCCceEE
Confidence            223344568889883 44 4444555789999998 554     2221 22223334 8999999998777777788999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (353)
                      +||. ++...  . .....+...+.++..  +|++.++...++.|..||.. ++ ...+ .+..+...+.++++ ++   
T Consensus       208 ~~~~-~g~~~--~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~-~~~~~~~~~~~i~~-~~---  276 (299)
T 2z2n_A          208 RITT-SGEIT--E-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEY-PIQIKSAEPHGICF-DG---  276 (299)
T ss_dssp             EECT-TCCEE--E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEE-ECSSSSCCEEEEEE-CS---
T ss_pred             EECC-CCcEE--E-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEE-eCCCCCCccceEEe-cC---
Confidence            9998 54211  1 112223344556655  46766666678899999983 32 2222 23345567999999 77   


Q ss_pred             CCeEEEEccCCCeEEEEEcCCC
Q 018591          318 GGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       318 ~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                       +.+.++.+ .+.+..++.++.
T Consensus       277 -g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          277 -ETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             -SCEEEEET-TTEEEEEEEC--
T ss_pred             -CCEEEEec-CCcEEEEEcCcc
Confidence             77777765 456777776654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=3.4e-15  Score=124.45  Aligned_cols=255  Identities=9%  Similarity=-0.061  Sum_probs=157.5

Q ss_pred             EEEeCCCceeeEEeccCceeeEE-----EEEe--CCEEEEecC-CCc--EEEEEcccCccceeEEeeccccccceeeeec
Q 018591           39 IVWQQPDLRMFTKFGHGDGSVKA-----VVTV--GNKVFTAHQ-DSR--IRVWKVSRSSENVFRLVDTLPTTKDYLGKFM  108 (353)
Q Consensus        39 ~vwd~~~~~~~~~~~~~~~~v~~-----~~~~--~~~l~s~~~-dg~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (353)
                      ..+|..++..+..+..|......     .+|+  +++|+.++. +|.  |.+||+.+++.     ...            
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-----~~l------------   75 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA-----TQL------------   75 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE-----EEC------------
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce-----EEe------------
Confidence            34577788888888877665555     5666  788888776 674  77778776641     111            


Q ss_pred             ccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE---eCC-eEE
Q 018591          109 KQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA---SKG-IVY  182 (353)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~---~~~-~l~  182 (353)
                                     ..++...+....|+|  +.|+.++.++.|++||+.+++....+..+...+....+   +++ .++
T Consensus        76 ---------------t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           76 ---------------TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             ---------------CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             ---------------eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence                           113333444567888  78999988899999999998877666655555544443   333 333


Q ss_pred             E----------------------EcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCC----
Q 018591          183 S----------------------ASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSD----  235 (353)
Q Consensus       183 ~----------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d----  235 (353)
                      .                      ...+..|.+||+.+++     .. .+..+.... ..+.|+| +++.|+....+    
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~-~l~~~~~~~-~~~~~sp~dg~~l~~~~~~~~~~  213 (388)
T 3pe7_A          141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----ST-VILQENQWL-GHPIYRPYDDSTVAFCHEGPHDL  213 (388)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----EE-EEEEESSCE-EEEEEETTEEEEEEEEECSCTTT
T ss_pred             cccccCcccccccccchhhhhhccCCcceEEEEECCCCc-----eE-EeecCCccc-cccEECCCCCCEEEEEEecCCCC
Confidence            2                      2244789999999876     22 233333333 8899999 99988776653    


Q ss_pred             --CcEEEeeccccccceeeeeeccccc-eeEE--EEEEcCcEEEEecC-C----CeEEEEecCCCcceEEeccccCCCcC
Q 018591          236 --GFVMGWEGNVEIVRWKLACETKAHE-MAVL--CVCLVGEFLCSGSA-D----KSIGIWKREAFGKLCRVGAITGHEGP  305 (353)
Q Consensus       236 --g~i~i~d~~~~~~~~~~~~~~~~~~-~~v~--~~~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~h~~~  305 (353)
                        ..|.++|......    ........ ..+.  .++++|+.|+..+. +    +.|++||+.+++.. .+..+.++...
T Consensus       214 ~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~  288 (388)
T 3pe7_A          214 VDARMWLINEDGTNM----RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR-QLTSMPACSHL  288 (388)
T ss_dssp             SSCSEEEEETTSCCC----EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE-EEEEECCEEEE
T ss_pred             CcceEEEEeCCCCce----EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE-EEEcCCCceee
Confidence              3677777765421    11111111 2333  45567886655332 2    24999999987632 33333331111


Q ss_pred             ---eEEEEeecCCCCCCeEEEEc---------cCCCeEEEEEcCCCCC
Q 018591          306 ---VKCLQASPNAVGGGFLLYSG---------SLDKSLRVWWVSKQSS  341 (353)
Q Consensus       306 ---v~~~~~~~~~~~~~~~l~s~---------~~dg~i~iw~~~~~~~  341 (353)
                         ...+.|+|+    |+.|+..         ..+..|++||+.+++.
T Consensus       289 ~~~~~~~~~spd----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          289 MSNYDGSLMVGD----GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EECTTSSEEEEE----ECCC------------CCCCEEEEEETTTTEE
T ss_pred             eecCCCCeEccC----CCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence               122379999    8877754         4567899999987654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=4.3e-13  Score=115.90  Aligned_cols=271  Identities=12%  Similarity=0.139  Sum_probs=179.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcc--cCccceeEEeecccccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVS--RSSENVFRLVDTLPTTK  101 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~--~~~~~~~~~~~~~~~~~  101 (353)
                      +.++++...+++|.++|..+++.+..+.... .+..+.++  ++++++++.|+.|.+||+.  +.+     .+..++   
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-----~v~~i~---  237 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-----TVAEIK---  237 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-----EEEEEE---
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-----EeEEEe---
Confidence            4577777889999999999999998887543 45577787  8899999999999999995  433     222221   


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEe----C--CeEEEe-cCCCcEEEEEcCCceeeeeccc--------
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY----N--GLIYSG-SWDKTLKVWRVADLKCLESIKA--------  166 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~--------  166 (353)
                                               .......+.++    |  ++++++ ..++.|.++|..+.+.+..+..        
T Consensus       238 -------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~  292 (567)
T 1qks_A          238 -------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ  292 (567)
T ss_dssp             -------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred             -------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence                                     11234578888    4  455554 4569999999999888877642        


Q ss_pred             --cCc-ceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEE
Q 018591          167 --HDD-AVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVM  239 (353)
Q Consensus       167 --~~~-~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~  239 (353)
                        |.. .+..+..++   ..++....+|.|.++|..+.+..   ....+. .... ...+.|+|++++++++. .++.|.
T Consensus       293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~---~v~~i~-~~~~-~~d~~~~pdgr~~~va~~~sn~V~  367 (567)
T 1qks_A          293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL---KTTEIS-AERF-LHDGGLDGSHRYFITAANARNKLV  367 (567)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE---EEEEEE-CCSS-EEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc---eeeeee-cccc-ccCceECCCCCEEEEEeCCCCeEE
Confidence              112 566676633   26667777899999998775410   111111 1222 37889999999886654 678999


Q ss_pred             Eeeccccccceeeee-eccccce-eEEEEEEc-CcEEEEec-CCCeEEEEecCCCcc----eEEeccccCCCcCeEEEEe
Q 018591          240 GWEGNVEIVRWKLAC-ETKAHEM-AVLCVCLV-GEFLCSGS-ADKSIGIWKREAFGK----LCRVGAITGHEGPVKCLQA  311 (353)
Q Consensus       240 i~d~~~~~~~~~~~~-~~~~~~~-~v~~~~~~-~~~l~~~~-~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~  311 (353)
                      ++|..+++....... ....|.. ...-+.++ +...+++. .++.|.++|..+.+.    +..+..+......-..+..
T Consensus       368 ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~  447 (567)
T 1qks_A          368 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKT  447 (567)
T ss_dssp             EEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC
T ss_pred             EEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEe
Confidence            999998853333222 1223432 22224555 44444543 568999999987221    2244555544333345778


Q ss_pred             ecCCCCCCeEEEEccC-------CCeEEEEEcCCC
Q 018591          312 SPNAVGGGFLLYSGSL-------DKSLRVWWVSKQ  339 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~-------dg~i~iw~~~~~  339 (353)
                      +|+    +++|.+...       .++|.++|+.+.
T Consensus       448 ~p~----~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          448 HPN----SQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CTT----CSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCC----CCeEEEecCCCCCcccCceEEEEECCcc
Confidence            999    888887653       359999999876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.68  E-value=2.2e-13  Score=112.95  Aligned_cols=284  Identities=12%  Similarity=0.070  Sum_probs=178.0

Q ss_pred             CCCCceeeeeeCcc---------Cce-EEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEe
Q 018591            3 CKSHRSLAVLSGHV---------GSV-SSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTA   72 (353)
Q Consensus         3 ~~~~~~~~~l~~h~---------~~v-~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~   72 (353)
                      .++++.+..+....         ..+ ..+..++..++.++.++.|..+|..+++.+................++.++.+
T Consensus        70 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~  149 (376)
T 3q7m_A           70 ADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIH  149 (376)
T ss_dssp             TTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEE
T ss_pred             ccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEE
Confidence            34666665555421         222 34455678888899999999999999999887765433333334457889999


Q ss_pred             cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEE
Q 018591           73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKV  152 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~i  152 (353)
                      +.++.|..+|..+++.........     .                  ........    ......+.+++++.++.+..
T Consensus       150 ~~~g~l~~~d~~tG~~~W~~~~~~-----~------------------~~~~~~~~----~~~~~~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          150 TSNGQLQALNEADGAVKWTVNLDM-----P------------------SLSLRGES----APTTAFGAAVVGGDNGRVSA  202 (376)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECCC----------------------------CCCC----CCEEETTEEEECCTTTEEEE
T ss_pred             cCCCeEEEEECCCCcEEEEEeCCC-----C------------------ceeecCCC----CcEEECCEEEEEcCCCEEEE
Confidence            999999999998876221111000     0                  00000011    11223477888999999999


Q ss_pred             EEcCCceeeeeccccCcc----------e-EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591          153 WRVADLKCLESIKAHDDA----------V-NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       153 wd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (353)
                      +|..+++.+.........          + ......++.++.++.++.+..+|.++++     .......  ... ..+.
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~-----~~w~~~~--~~~-~~~~  274 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ-----IMWKREL--GSV-NDFI  274 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-----EEEEECC--CCE-EEEE
T ss_pred             EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-----EEeeccC--CCC-CCce
Confidence            999999887766432110          1 1122356788888999999999999887     3322221  112 3333


Q ss_pred             EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      .  ++..++.++.++.+..+|..+++..+.... .  ...........+..|++++.+|.|+.+|..+++....   ...
T Consensus       275 ~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~-~--~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~---~~~  346 (376)
T 3q7m_A          275 V--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD-L--LHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQ---QKV  346 (376)
T ss_dssp             E--ETTEEEEEETTCCEEEEETTTCCEEEEECT-T--TTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE---EEC
T ss_pred             E--ECCEEEEEcCCCeEEEEECCCCcEEEeecc-c--CCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEE---Eec
Confidence            3  356788888899999999998865544321 1  1111222233467888999999999999999874332   222


Q ss_pred             CCcCeEE-EEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          302 HEGPVKC-LQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       302 h~~~v~~-~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      ....+.+ ....      +..|+.++.||.|..|+
T Consensus       347 ~~~~~~~~~~~~------~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          347 DSSGFQTEPVAA------DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CTTCBCSCCEEE------TTEEEEEBTTSCEEEEE
T ss_pred             CCCcceeCCEEE------CCEEEEEeCCCEEEEEe
Confidence            2222222 2222      34778888999999886

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.68  E-value=1.2e-13  Score=113.14  Aligned_cols=252  Identities=11%  Similarity=0.040  Sum_probs=156.5

Q ss_pred             CceEEEEECCcEEEEEe---------CCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC---C--cEEE
Q 018591           17 GSVSSLALCGEFILSAS---------QGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD---S--RIRV   80 (353)
Q Consensus        17 ~~v~~~~~~~~~l~s~~---------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g--~i~~   80 (353)
                      ..+...+++|++++...         .++.|.+||+.+++....     ..+..+.|+  +++|+.++.+   +  .|.+
T Consensus        15 ~~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~   89 (347)
T 2gop_A           15 AYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWV   89 (347)
T ss_dssp             CEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred             EEcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence            45666667888776642         267899999988875433     467778887  7788877654   3  3677


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC------------
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW------------  146 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~------------  146 (353)
                      |++.+++...                                 +..+.. +..+.|+|  +.|+.++.            
T Consensus        90 ~~~~~g~~~~---------------------------------l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           90 ADLETLSSKK---------------------------------ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             EETTTTEEEE---------------------------------EEEESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             EECCCCceEE---------------------------------EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            7776654111                                 012223 78889988  56666653            


Q ss_pred             ---------------CCcEEEEEcCCceeeeeccccCcceEEEEEeCC-eEEEEcCCC-------cEEEEeCCCCCcccc
Q 018591          147 ---------------DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-IVYSASADG-------KIKAWGKELGKSHCH  203 (353)
Q Consensus       147 ---------------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~l~~~~~dg-------~i~iwd~~~~~~~~~  203 (353)
                                     ...|.+||+.+++.+..+.. . .+..+.|+++ .++++..++       ...+|.+.+++    
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~----  209 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK----  209 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE----
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc----
Confidence                           25799999988877455544 3 7788889444 555554432       34454444333    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCC--------CcEEEeeccccccceeeeeeccccceeEEE-EEE-cCcEE
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD--------GFVMGWEGNVEIVRWKLACETKAHEMAVLC-VCL-VGEFL  273 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~-~~~~l  273 (353)
                       . ..+..+ ... ..  ++|+|++|+.++.+        ..|.+||  ++    ........+...+.. +.+ ++ ++
T Consensus       210 -~-~~l~~~-~~~-~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----~~~~l~~~~~~~~~~~~~~sdg-~~  276 (347)
T 2gop_A          210 -E-EKMFEK-VSF-YA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK----EVMGILDEVDRGVGQAKIKDGK-VY  276 (347)
T ss_dssp             -E-EEEEEE-ESE-EE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS----CEEESSTTCCSEEEEEEEETTE-EE
T ss_pred             -e-EEeccC-cce-ee--ECCCCCEEEEEEccccCCccccceEEEEC--CC----ceEeccccCCcccCCccEEcCc-EE
Confidence             2 222222 222 33  39999988776644        3677777  33    122222334444543 445 45 88


Q ss_pred             EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE-EEEEcC
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL-RVWWVS  337 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i-~iw~~~  337 (353)
                      ++++.++.+++| +.+++ .   ..+..+...|.+++|+|      .++++++.++.. .+|.+.
T Consensus       277 ~~~~~~~~~~l~-~~~g~-~---~~~~~~~~~v~~~~~s~------~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          277 FTLFEEGSVNLY-IWDGE-I---KPIAKGRHWIMGFDVDE------IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEETTEEEEE-EESSS-E---EEEECSSSEEEEEEESS------SEEEEEECSSSCCEEEEES
T ss_pred             EEEecCCcEEEE-EcCCc-e---EEEecCCCeEEeeeeeC------cEEEEEcCCCChHHheEeC
Confidence            889999999999 87543 2   22334577899999987      266777666654 777776

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=2.7e-13  Score=110.00  Aligned_cols=238  Identities=10%  Similarity=0.054  Sum_probs=153.4

Q ss_pred             CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEec-CCCcEEEEEcccCccceeEE
Q 018591           17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAH-QDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~-~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .....++++ +++.++...++.|.+||..+++.+..+.. ......++++ +..++.+. .++.|.+||..+.+     .
T Consensus        44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~-----~  117 (328)
T 3dsm_A           44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE-----I  117 (328)
T ss_dssp             SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE-----E
T ss_pred             ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe-----E
Confidence            346778887 55556666679999999999999888854 3567788884 44666665 78999999998775     2


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec--CCCcEEEEEcCCceeeeeccccCcce
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS--WDKTLKVWRVADLKCLESIKAHDDAV  171 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v  171 (353)
                      ...++....                      .+.......+++..+.++++.  .++.|.++|+.+++.+..+.. ....
T Consensus       118 ~~~i~~g~~----------------------~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p  174 (328)
T 3dsm_A          118 TGYIECPDM----------------------DMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQP  174 (328)
T ss_dssp             EEEEECTTC----------------------CTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCB
T ss_pred             EEEEEcCCc----------------------cccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCc
Confidence            222111000                      001113334555555665555  488999999999988877754 3344


Q ss_pred             EEEEE-eCCeEEEEcC-C----------CcEEEEeCCCCCcccccceeeeeccC-CceeeEEEEcCCCCeEEeecCCCcE
Q 018591          172 NGLVA-SKGIVYSASA-D----------GKIKAWGKELGKSHCHSLKGILEGHK-DVSLNSVVVSDDGKWVYGGGSDGFV  238 (353)
Q Consensus       172 ~~i~~-~~~~l~~~~~-d----------g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i  238 (353)
                      ..+.+ +++.++.++. +          +.|.++|..+.+     ....+.... ..+ ..++++|+++.++++..  .|
T Consensus       175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-----v~~~~~~~~g~~p-~~la~~~d~~~lyv~~~--~v  246 (328)
T 3dsm_A          175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-----VEKQFKFKLGDWP-SEVQLNGTRDTLYWINN--DI  246 (328)
T ss_dssp             CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-----EEEEEECCTTCCC-EEEEECTTSCEEEEESS--SE
T ss_pred             cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-----EEEEEecCCCCCc-eeEEEecCCCEEEEEcc--EE
Confidence            67777 4454444443 3          689999998876     444443322 234 89999999999888765  89


Q ss_pred             EEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEe----cCCCeEEEEecCCCcc
Q 018591          239 MGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSG----SADKSIGIWKREAFGK  292 (353)
Q Consensus       239 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~----~~dg~i~iw~~~~~~~  292 (353)
                      .+||..++................-.++.++ +.++++.    ..++.|.+||.. ++.
T Consensus       247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            9999987643211111110122233445553 5566666    678999999988 663

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.67  E-value=3.2e-13  Score=111.94  Aligned_cols=272  Identities=12%  Similarity=0.062  Sum_probs=177.9

Q ss_pred             EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC----------ceeeEEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591           22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG----------DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      ....+..++.++.++.|..+|..+++.+..+...          ......+...++.++.++.++.|..+|.++++....
T Consensus        49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~  128 (376)
T 3q7m_A           49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ  128 (376)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence            3445778888888999999999999988776552          122234455688999999999999999988763211


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV  171 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  171 (353)
                      ..   ..                             ...........+.+++++.++.|..+|..+++.+..........
T Consensus       129 ~~---~~-----------------------------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          129 TK---VA-----------------------------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             EE---CS-----------------------------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred             Ee---CC-----------------------------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence            11   00                             00011112335788889999999999999999887765432211


Q ss_pred             -----EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc----------eeeEEEEcCCCCeEEeecCCC
Q 018591          172 -----NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV----------SLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       172 -----~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg  236 (353)
                           ......++.++.++.++.+..+|..+++     ...........          .......  .+..++.++.++
T Consensus       177 ~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~-----~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g  249 (376)
T 3q7m_A          177 SLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ-----MIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNG  249 (376)
T ss_dssp             --CCCCCCEEETTEEEECCTTTEEEEEETTTCC-----EEEEEECCC-----------CCCCCCEE--ETTEEEEECTTS
T ss_pred             eecCCCCcEEECCEEEEEcCCCEEEEEECCCCc-----EEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCc
Confidence                 2233457788889999999999999887     32222211100          0001111  245778888899


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      .+..+|..+++..+....      ........++..++.++.++.|..+|..+++.......+  ....+......    
T Consensus       250 ~l~~~d~~tG~~~w~~~~------~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~----  317 (376)
T 3q7m_A          250 NLTALDLRSGQIMWKREL------GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLLTSPVLY----  317 (376)
T ss_dssp             CEEEEETTTCCEEEEECC------CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCCCCCEEE----
T ss_pred             EEEEEECCCCcEEeeccC------CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcccCCEEE----
Confidence            999999998865544321      123345556788888889999999999998854333211  11223333333    


Q ss_pred             CCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          317 GGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       317 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                        +..|+.++.+|.|.++|..+++.+....
T Consensus       318 --~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          318 --NGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             --TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             --CCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence              4478888899999999999988765443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.66  E-value=2.4e-14  Score=129.20  Aligned_cols=306  Identities=9%  Similarity=0.021  Sum_probs=171.3

Q ss_pred             CCCCceeeeeeCccCce-----EEEEEC--CcEEEEEeCC---------CcEEEEeCCCceeeEEeccCceeeEEEEEe-
Q 018591            3 CKSHRSLAVLSGHVGSV-----SSLALC--GEFILSASQG---------KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-   65 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v-----~~~~~~--~~~l~s~~~d---------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-   65 (353)
                      ..+++....+.+|....     ..++|+  |++|+.++.+         +.+.+||+.+++... +..|...+...+|+ 
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SP  121 (740)
T 4a5s_A           43 AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSP  121 (740)
T ss_dssp             TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECS
T ss_pred             CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECC
Confidence            45677777788887532     336665  8899998876         566799999988654 55667788999998 


Q ss_pred             -CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC---------CceEEEE
Q 018591           66 -GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA---------DSISCLT  135 (353)
Q Consensus        66 -~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~  135 (353)
                       |+.|+.+. ++.|++|++.++......    ......                   .++.++.         +....+.
T Consensus       122 dG~~la~~~-~~~i~~~~~~~~~~~~lt----~~g~~~-------------------~~~~g~~~~v~~ee~~~~~~~~~  177 (740)
T 4a5s_A          122 VGHKLAYVW-NNDIYVKIEPNLPSYRIT----WTGKED-------------------IIYNGITDWVYEEEVFSAYSALW  177 (740)
T ss_dssp             STTCEEEEE-TTEEEEESSTTSCCEECC----SCCBTT-------------------TEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCEEEEEE-CCeEEEEECCCCceEEEc----CCCCcc-------------------ceecCcccccccchhcCCCcceE
Confidence             78888874 679999999876532111    000000                   0000111         1111234


Q ss_pred             EeC--CeEEEecC----------------------------------C--CcEEEEEcCC---ce--eeeecc------c
Q 018591          136 VYN--GLIYSGSW----------------------------------D--KTLKVWRVAD---LK--CLESIK------A  166 (353)
Q Consensus       136 ~~~--~~l~~~~~----------------------------------d--g~v~iwd~~~---~~--~~~~~~------~  166 (353)
                      |+|  +.|+.++.                                  +  ..|++||+.+   ++  ....+.      +
T Consensus       178 wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~  257 (740)
T 4a5s_A          178 WSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLI  257 (740)
T ss_dssp             ECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHT
T ss_pred             ECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCC
Confidence            444  33333221                                  1  2588899988   63  222332      3


Q ss_pred             cCcceEEEEE-eCCe-EEEEc----CCCcEEEEeCCCCCcc--cccceee-eeccCCce----eeEEEEcCCCCeEE-ee
Q 018591          167 HDDAVNGLVA-SKGI-VYSAS----ADGKIKAWGKELGKSH--CHSLKGI-LEGHKDVS----LNSVVVSDDGKWVY-GG  232 (353)
Q Consensus       167 ~~~~v~~i~~-~~~~-l~~~~----~dg~i~iwd~~~~~~~--~~~~~~~-~~~~~~~~----v~~~~~~~~~~~l~-~~  232 (353)
                      |...+..++| +++. ++...    .+..|.+||+.+++..  +...... ...+...+    .....|+|||+.++ ..
T Consensus       258 ~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~  337 (740)
T 4a5s_A          258 GDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII  337 (740)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred             CCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence            7778999999 4453 33332    2346999999887510  0001111 13333322    13678999999776 44


Q ss_pred             c-CCC--cEEEeeccccccceeeeeeccccceeEEE-EEEcCcEEE-EecC----CC--eEEEEecCCCcceEEec-ccc
Q 018591          233 G-SDG--FVMGWEGNVEIVRWKLACETKAHEMAVLC-VCLVGEFLC-SGSA----DK--SIGIWKREAFGKLCRVG-AIT  300 (353)
Q Consensus       233 ~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~-~~~~----dg--~i~iw~~~~~~~~~~~~-~~~  300 (353)
                      + .+|  .|.+||...+.    ... +......+.. +.++++.|+ ++..    .+  .|+..++..++...++. .+.
T Consensus       338 s~~~G~~~l~~~~~~~~~----~~~-lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~  412 (740)
T 4a5s_A          338 SNEEGYRHICYFQIDKKD----CTF-ITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELN  412 (740)
T ss_dssp             ECTTSCEEEEEEETTCSS----CEE-SCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTS
T ss_pred             EcCCCceEEEEEECCCCc----eEe-cccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccC
Confidence            4 444  57778877652    221 2222223332 346665444 4443    23  44444554433211221 112


Q ss_pred             CCCcCeEEEEeecCCCCCCeEEEEccCC---CeEEEEEcCCCCCc
Q 018591          301 GHEGPVKCLQASPNAVGGGFLLYSGSLD---KSLRVWWVSKQSST  342 (353)
Q Consensus       301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~  342 (353)
                      +.........|+|+    +++++.....   ..+.+++..+++..
T Consensus       413 ~~~~~~~~~~~S~d----g~~~~~~~s~~~~p~~~l~~~~~~~~~  453 (740)
T 4a5s_A          413 PERCQYYSVSFSKE----AKYYQLRCSGPGLPLYTLHSSVNDKGL  453 (740)
T ss_dssp             TTTBCBEEEEECTT----SSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred             CCCCceEEEEECCC----CCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence            23467889999999    7766544332   46788887766543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=3.1e-13  Score=108.14  Aligned_cols=239  Identities=12%  Similarity=0.055  Sum_probs=149.9

Q ss_pred             ceeeEEeccCceeeEEEEEe--CC-EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR  122 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (353)
                      +..+..+..+.....+++|+  ++ .++++..++.|..|+.+++ ..   ..                            
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---~~----------------------------   64 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---PE----------------------------   64 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---EE----------------------------
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---EE----------------------------
Confidence            34445555555667788888  65 6788888999999998765 11   11                            


Q ss_pred             eeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeecccc----CcceEEEEE-eCCe-EEE----Ec-----
Q 018591          123 LWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAH----DDAVNGLVA-SKGI-VYS----AS-----  185 (353)
Q Consensus       123 ~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~i~~-~~~~-l~~----~~-----  185 (353)
                        ..+...+.++++++  .++++...++.|.+||..+++........    ...+..+++ +++. +++    ++     
T Consensus        65 --~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~  142 (296)
T 3e5z_A           65 --MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEE  142 (296)
T ss_dssp             --ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGG
T ss_pred             --ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccc
Confidence              13445688999988  45555555689999998777654433221    234567888 4444 444    32     


Q ss_pred             --------CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc-cccc-ceeeeee
Q 018591          186 --------ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN-VEIV-RWKLACE  255 (353)
Q Consensus       186 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~~~~~~~  255 (353)
                              ..+.|..++.. ++      ...+..+...+ ..++|+|+++.+++.+.++.|.+|++. .+.. .....  
T Consensus       143 ~~~~~~~~~~~~l~~~~~~-g~------~~~~~~~~~~~-~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~--  212 (296)
T 3e5z_A          143 GYGGEMELPGRWVFRLAPD-GT------LSAPIRDRVKP-NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH--  212 (296)
T ss_dssp             SSCCCCCSSSCEEEEECTT-SC------EEEEECCCSSE-EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE--
T ss_pred             cccccccCCCcEEEEECCC-CC------EEEeecCCCCC-ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE--
Confidence                    13456666655 33      22333444444 899999999988888888999999987 3321 00111  


Q ss_pred             ccccceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cCCCCCCeEEEEccCCCeEE
Q 018591          256 TKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       256 ~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~l~s~~~dg~i~  332 (353)
                      +..+...+  .++.++|++.++.  ++.|.+||.. ++   .+..+..+.. +++++|. |+    ++.|++++.++ +.
T Consensus       213 ~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~---~~~~~~~~~~-~~~~~f~~~d----~~~L~v~t~~~-l~  280 (296)
T 3e5z_A          213 FTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD---ELGRVLTPQT-TSNLCFGGPE----GRTLYMTVSTE-FW  280 (296)
T ss_dssp             ECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC---EEEEEECSSC-CCEEEEESTT----SCEEEEEETTE-EE
T ss_pred             eeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC---EEEEEECCCC-ceeEEEECCC----CCEEEEEcCCe-EE
Confidence            11122222  3444557766655  7889999986 45   3444555666 9999994 77    88888887764 44


Q ss_pred             EEEcCCCC
Q 018591          333 VWWVSKQS  340 (353)
Q Consensus       333 iw~~~~~~  340 (353)
                      -++..+.+
T Consensus       281 ~~~~~~~~  288 (296)
T 3e5z_A          281 SIETNVRG  288 (296)
T ss_dssp             EEECSCCB
T ss_pred             EEEccccc
Confidence            44554443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=1.9e-13  Score=107.83  Aligned_cols=236  Identities=9%  Similarity=0.027  Sum_probs=148.7

Q ss_pred             eeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591           58 SVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL  134 (353)
Q Consensus        58 ~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  134 (353)
                      ...+++++  ++.++ +...++.|.+|+..+....   .   ..                          ..+...+.++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~---~~--------------------------~~~~~~p~~i   72 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---V---LP--------------------------FNGLYQPQGL   72 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---E---CC--------------------------CCSCCSCCCE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---e---Ee--------------------------eCCcCCccee
Confidence            56677776  55455 4367788998886544310   0   00                          0222356678


Q ss_pred             EEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeec
Q 018591          135 TVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEG  211 (353)
Q Consensus       135 ~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  211 (353)
                      ++++ +.++.+..++.|..||................+.++++. ++ .+++...++.|.+|+..+..     .......
T Consensus        73 ~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~~~~~  147 (270)
T 1rwi_B           73 AVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----QTVLPFT  147 (270)
T ss_dssp             EECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-----CEECCCC
T ss_pred             EECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-----eEeeccc
Confidence            8887 445555448899999986554332222223568899983 44 55555667899999765543     1111112


Q ss_pred             cCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCC
Q 018591          212 HKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       212 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      ....+ ..++++++++++++...++.|.+||.......    .....+......+..  +|.++++...++.|.+|+...
T Consensus       148 ~~~~p-~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          148 GLNDP-DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV----VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             SCCSC-CCEEECTTCCEEEEEGGGTEEEEECTTTCCEE----ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred             cCCCc-eeEEEeCCCCEEEEECCCCEEEEEecCCCceE----eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence            22234 88999999997777777889999998765321    111112233445555  477777777788999999876


Q ss_pred             CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ...   ......+...+.+++++|+    |+++++...++.|+++++...+..
T Consensus       223 ~~~---~~~~~~~~~~p~~i~~~~~----g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          223 TTS---TVLPFTGLNTPLAVAVDSD----RTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             SCC---EECCCCSCSCEEEEEECTT----CCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             Ccc---eeeccCCCCCceeEEECCC----CCEEEEECCCCEEEEEcCCCcccc
Confidence            432   1112233457899999999    889999999999999998876543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=7e-12  Score=103.13  Aligned_cols=281  Identities=9%  Similarity=-0.003  Sum_probs=172.5

Q ss_pred             CCcEEEEEeC--CC---cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCc
Q 018591           25 CGEFILSASQ--GK---DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSS   87 (353)
Q Consensus        25 ~~~~l~s~~~--dg---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~   87 (353)
                      ++++++....  ..   .|.++|..+++.+..+.....+  .+.++  +++++.+.          .++.|.+||..+.+
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~  108 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL  108 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence            4666666553  22   8899999999999888765444  66666  78888775          36789999997665


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES  163 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~  163 (353)
                           .+..++...                  ..+.  .+...-..+.++|  ++|+++..  ++.|.++| .+++.+..
T Consensus       109 -----~~~~i~~~~------------------~~~~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          109 -----PIADIELPD------------------APRF--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             -----EEEEEECCC------------------cccc--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence                 222221100                  0000  0112234678888  77777764  57899999 99988877


Q ss_pred             -ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccce-eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEe
Q 018591          164 -IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLK-GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW  241 (353)
Q Consensus       164 -~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  241 (353)
                       +.. ...+......+..+++.+.||.+.++|. +++....... ..+ ...........+.+++..++..+.++.+.+.
T Consensus       163 ~i~~-~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vi  239 (373)
T 2mad_H          163 LLSS-PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQA  239 (373)
T ss_pred             EcCC-CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEE
Confidence             643 2222211123446778888999999999 6652100000 001 1111122334566666555544577889999


Q ss_pred             eccccccceeeeeec----------cccceeEEEEEEcCcEEEEecC----------CCeEEEEecCCCcceEEeccccC
Q 018591          242 EGNVEIVRWKLACET----------KAHEMAVLCVCLVGEFLCSGSA----------DKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       242 d~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      |+.............          .........++++++.+++...          ++.|.++|..+.+.   +..+. 
T Consensus       240 d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v---v~~i~-  315 (373)
T 2mad_H          240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---SSQIS-  315 (373)
T ss_pred             eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE---EEEEE-
Confidence            986542111000000          0111223556777777666543          36899999998874   33343 


Q ss_pred             CCcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcCCCCCccc
Q 018591          302 HEGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~  344 (353)
                      -......++|+||    ++ +++++. .++.|.++|+.+.+.+.+
T Consensus       316 ~g~~p~~i~~s~D----g~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          316 LGHDVDAISVAQD----GGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCCcCeEEECCC----CCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            2335899999999    88 777777 589999999999988876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=2.3e-13  Score=107.26  Aligned_cols=210  Identities=14%  Similarity=0.037  Sum_probs=142.4

Q ss_pred             CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC-CceEEEEEeC--CeEE
Q 018591           66 GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA-DSISCLTVYN--GLIY  142 (353)
Q Consensus        66 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~--~~l~  142 (353)
                      ++.|++++.|+.|.+||.++++     .+-.++                           .+. ..+.++.+.|  +.++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~-----~~w~~~---------------------------~~~~~~~~~~~~~pdG~ilv   52 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKE-----IVWEYP---------------------------LEKGWECNSVAATKAGEILF   52 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTE-----EEEEEE---------------------------CCTTCCCCEEEECTTSCEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCe-----EEEEeC---------------------------CCccCCCcCeEECCCCCEEE
Confidence            5788999999999999997876     222221                           122 3567788888  4555


Q ss_pred             EecCCCcEEEEEcCCceeeeeccccC-cceEEEEE-eCC-eEEEEcC-CCcEEEEeCCCCCcccccceeeee------cc
Q 018591          143 SGSWDKTLKVWRVADLKCLESIKAHD-DAVNGLVA-SKG-IVYSASA-DGKIKAWGKELGKSHCHSLKGILE------GH  212 (353)
Q Consensus       143 ~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~-~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~------~~  212 (353)
                        +.++.|..||. +++.+.++..+. ..+.++.+ +++ .+++.+. ++.+..+|. +++     ....+.      .+
T Consensus        53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk-----~l~~~~~~~~~~~~  123 (276)
T 3no2_A           53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGE-----VLSKTEFETGIERP  123 (276)
T ss_dssp             --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSC-----EEEEEEECCSCSSG
T ss_pred             --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCC-----EEEEEeccCCCCcc
Confidence              45788999998 899998887643 46777777 333 6666665 777888876 444     222221      11


Q ss_pred             CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591          213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      ...+ ..+++.++|+++++...++.|..||.. ++..++....  . ........+++++++++..++.|..+|..+++.
T Consensus       124 ~~~~-~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          124 HAQF-RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS--G-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             GGSC-SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--S-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             cccc-cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--C-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            1222 567889999999999999999999998 7555544332  1 111233345688999999899999999998885


Q ss_pred             eEEeccc--cC-CCcCeEEEEeecCCCCCCeEEEEc
Q 018591          293 LCRVGAI--TG-HEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       293 ~~~~~~~--~~-h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      ...+...  .+ ....+..+...++    |.++++.
T Consensus       199 ~w~~~~~~~~~~~l~~~~~~~~~~~----G~i~v~~  230 (276)
T 3no2_A          199 VRRVNANDIEGVQLFFVAQLFPLQN----GGLYICN  230 (276)
T ss_dssp             EEEEEGGGSBSCCCSEEEEEEECTT----SCEEEEE
T ss_pred             EEEecCCCCCCccccccccceEcCC----CCEEEEe
Confidence            5444321  11 1223778888888    8888776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.62  E-value=1.2e-11  Score=106.85  Aligned_cols=309  Identities=12%  Similarity=0.055  Sum_probs=192.7

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCC--CceeeEEeccCceeeEEEEEe------CCEEEEe
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQP--DLRMFTKFGHGDGSVKAVVTV------GNKVFTA   72 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~------~~~l~s~   72 (353)
                      ..+++.+.++.... .+..+.|+  |+++++++.|+.|.+||+.  +++.+..+..... ...++++      +++++++
T Consensus       184 ~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~  261 (567)
T 1qks_A          184 GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAG  261 (567)
T ss_dssp             TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEE
T ss_pred             CCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEE
Confidence            45677777776443 56688886  8899999999999999995  8888888876444 3566665      6677766


Q ss_pred             c-CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCC-ceEEEEEeC---CeEEEecCC
Q 018591           73 H-QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHAD-SISCLTVYN---GLIYSGSWD  147 (353)
Q Consensus        73 ~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~---~~l~~~~~d  147 (353)
                      . .++++.++|..+.+     .+..++......    .             ....|.. .+..+..++   ..++....+
T Consensus       262 n~~~~~v~ViD~~t~~-----~~~~i~~~~~~~----~-------------~~~~~p~~rva~i~~s~~~~~~vv~~~~~  319 (567)
T 1qks_A          262 AYWPPQYVIMDGETLE-----PKKIQSTRGMTY----D-------------EQEYHPEPRVAAILASHYRPEFIVNVKET  319 (567)
T ss_dssp             EEETTEEEEEETTTCC-----EEEEEECCEECT----T-------------TCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             EccCCeEEEEECCCCc-----EEEEEecccccc----c-------------cccccCCCceEEEEEcCCCCEEEEEecCC
Confidence            5 45899999987765     222222110000    0             0001222 455666665   456666778


Q ss_pred             CcEEEEEcCCcee--eeeccccCcceEEEEEeC-C-e-EEEEcCCCcEEEEeCCCCCcccccceeeeec-----cCCcee
Q 018591          148 KTLKVWRVADLKC--LESIKAHDDAVNGLVASK-G-I-VYSASADGKIKAWGKELGKSHCHSLKGILEG-----HKDVSL  217 (353)
Q Consensus       148 g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~-~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v  217 (353)
                      |.|.++|..+.+.  +..+. .......+.|++ + + +++...++.|.++|..+++     +......     |.+.. 
T Consensus       320 g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-----l~~~i~vgg~~Phpg~g-  392 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-----LVAIEDTGGQTPHPGRG-  392 (567)
T ss_dssp             TEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-----EEEEEECSSSSBCCTTC-
T ss_pred             CeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-----EEEEEeccCcCCCCccc-
Confidence            9999999876432  22222 234566778843 3 4 4455578899999999886     3333322     22211 


Q ss_pred             eEEEEcCCCCeE-Eeec-CCCcEEEeecccccc---ceeeeeeccccc--eeEEEEEEcCcEEEEecC-------CCeEE
Q 018591          218 NSVVVSDDGKWV-YGGG-SDGFVMGWEGNVEIV---RWKLACETKAHE--MAVLCVCLVGEFLCSGSA-------DKSIG  283 (353)
Q Consensus       218 ~~~~~~~~~~~l-~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~-------dg~i~  283 (353)
                      .. .++|++..+ +++. .++.|.++|......   .++....+....  .......++++++.+...       .+.|.
T Consensus       393 ~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~  471 (567)
T 1qks_A          393 AN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA  471 (567)
T ss_dssp             EE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred             ee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence            11 257875444 4443 568999999887321   134444444322  223456778888887653       45999


Q ss_pred             EEecCCC-----cce-EEe--cc---ccCCCcCeEEEEeecCCCCCCeEEEEcc-----CCCeEEEEEcCCCCCcccccC
Q 018591          284 IWKREAF-----GKL-CRV--GA---ITGHEGPVKCLQASPNAVGGGFLLYSGS-----LDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       284 iw~~~~~-----~~~-~~~--~~---~~~h~~~v~~~~~~~~~~~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      ++|+.+.     ... ..+  .+   +..-...+..+.|+|+    |+.+..+.     .++.|.|+|.++.+.......
T Consensus       472 v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          472 VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD----GTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             EEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT----SSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             EEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC----CCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            9999876     211 122  11   1112346899999999    77666552     378999999999987776654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=6.6e-13  Score=118.95  Aligned_cols=271  Identities=13%  Similarity=0.022  Sum_probs=165.2

Q ss_pred             EEECCcEEEEEeCCC---c--EEEEeCCCceeeEEec------cCceeeEEEEEe--CCEEE-----EecCCCcEEEEEc
Q 018591           22 LALCGEFILSASQGK---D--IIVWQQPDLRMFTKFG------HGDGSVKAVVTV--GNKVF-----TAHQDSRIRVWKV   83 (353)
Q Consensus        22 ~~~~~~~l~s~~~dg---~--v~vwd~~~~~~~~~~~------~~~~~v~~~~~~--~~~l~-----s~~~dg~i~~w~~   83 (353)
                      ...+|++++....++   .  |.+.+...++....+.      +|...+..+.|+  +++|+     .|+.+.+|++||+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            345677777665543   3  3444444554433332      355678888998  77877     4555678999999


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc------------
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT------------  149 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~------------  149 (353)
                      ++++...   ...+                            .. .....++|+|  +.|+.++.|..            
T Consensus       155 ~tg~~~~---~~~~----------------------------~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          155 DSGEWSK---VDVI----------------------------EG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             TTCCBCS---SCCB----------------------------SC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             CCCCCcC---Cccc----------------------------Cc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            9876210   0000                            00 1115688998  67888877765            


Q ss_pred             -EEEEEcCCce----eeeeccccCcceEEEEEeCC--eEEEEcCCC----cEEEEeCCCCCcccccceeeeeccCCceee
Q 018591          150 -LKVWRVADLK----CLESIKAHDDAVNGLVASKG--IVYSASADG----KIKAWGKELGKSHCHSLKGILEGHKDVSLN  218 (353)
Q Consensus       150 -v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~  218 (353)
                       |++|++.++.    .+.....+...+..+.++++  .++..+.++    .|.+||..+++     . ..+..+.... .
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-----~-~~l~~~~~~~-~  275 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-----F-RLLVKGVGAK-Y  275 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-----C-EEEEECSSCC-E
T ss_pred             EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-----e-EEeecCCCce-E
Confidence             9999998765    33344445567888899443  666665555    67777655443     2 2333333333 4


Q ss_pred             EEEEcCCCCeEEeec---CCCcEEEeeccccccc-eeeeeecccc-ceeEEEEEEc-CcEEEEecCCCeEEEEecC-CCc
Q 018591          219 SVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVR-WKLACETKAH-EMAVLCVCLV-GEFLCSGSADKSIGIWKRE-AFG  291 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~-~~~~~~~~~~-~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~-~~~  291 (353)
                      ...+ +++.+++...   .++.|.+||+.++... +..  ....+ ...+..+.+. +.++++...|+..++|.+. +++
T Consensus       276 ~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          276 EVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE--IVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             EEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEE--EECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred             EEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeE--EecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC
Confidence            4455 5566444444   2578999998775321 111  11222 3345555554 6678888889988888665 333


Q ss_pred             ceEEeccccCC-CcCeEEEEeecCCCCCCeEEE----EccCCCeEEEEEcCCCCC
Q 018591          292 KLCRVGAITGH-EGPVKCLQASPNAVGGGFLLY----SGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       292 ~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~----s~~~dg~i~iw~~~~~~~  341 (353)
                         ....+..+ .+.+..+.++|+    ++.++    +....++|++||+.+++.
T Consensus       353 ---~~~~l~~~~~~~v~~~~~s~d----~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          353 ---PVRTVQLPGVGAASNLMGLED----LDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ---EEEECCCSSSSEECCCBSCTT----CSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             ---eeEEecCCCCeEEEEeecCCC----CCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence               23334433 567888899998    76666    444568999999987653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=1.9e-12  Score=103.54  Aligned_cols=242  Identities=11%  Similarity=0.045  Sum_probs=154.1

Q ss_pred             CCceeeeeeCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GE-FILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      .+..+..+..+.....+++|+  ++ +++++..++.|..||..++  ...+..+...+.+++++  ++.+++...++.|.
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            345566777777888999996  65 7888888999999998877  56666677788999997  66666666678999


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEE----ec--------
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS----GS--------  145 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~----~~--------  145 (353)
                      +||..+++....  ......                          .....+..+++++  .++++    |+        
T Consensus        94 ~~d~~~g~~~~~--~~~~~~--------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           94 RQREPGGEWESI--ADSFEG--------------------------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             EECSTTCCEEEE--ECEETT--------------------------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             EEcCCCCcEEEE--eeccCC--------------------------CCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence            999876652111  000000                          1223456788888  44444    33        


Q ss_pred             -----CCCcEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcCCCcEEEEeCC-CCCcccccceeeeeccCCcee
Q 018591          146 -----WDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASADGKIKAWGKE-LGKSHCHSLKGILEGHKDVSL  217 (353)
Q Consensus       146 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v  217 (353)
                           ..+.|..++.. ++. ..+..+......+++++ + .+++.+.++.|.+||+. ++...  .....+..+...+ 
T Consensus       146 ~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~--~~~~~~~~~~~~p-  220 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE--YQGVHFTVEPGKT-  220 (296)
T ss_dssp             CCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE--EEEEEECCSSSCC-
T ss_pred             ccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc--CCCeEeeCCCCCC-
Confidence                 13456666654 433 33445566778999943 3 56777788999999987 33310  0022222233334 


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE---cCcEEEEecCCCeEEEEecCCC
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL---VGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      ..++++++|++.++.  ++.|.+|+....     ....+..+.. +.++.+   +++.|++++.++ +.-++..+.
T Consensus       221 ~~i~~d~~G~l~v~~--~~~v~~~~~~g~-----~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          221 DGLRVDAGGLIWASA--GDGVHVLTPDGD-----ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             CSEEEBTTSCEEEEE--TTEEEEECTTSC-----EEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             CeEEECCCCCEEEEc--CCeEEEECCCCC-----EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            789999999866666  788999998733     2223333333 444444   467788887764 555565543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=9.2e-11  Score=93.83  Aligned_cols=269  Identities=10%  Similarity=0.072  Sum_probs=169.3

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeE-EeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcc
Q 018591           14 GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFT-KFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      .....+.+++++  |++.++...++.|.+||.. ++... .+..+...+.+++++  +...++...++.|..+|.. +..
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            445688999996  7777766678999999987 55443 223334678888887  5555555557889999876 431


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeee-ecc
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-SIK  165 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-~~~  165 (353)
                      .   .. ..+                           .....+.++++.+  .++++...++.|..+|.. ++... .+.
T Consensus        95 ~---~~-~~~---------------------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  142 (300)
T 2qc5_A           95 T---EY-PLP---------------------------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP  142 (300)
T ss_dssp             E---EE-ECS---------------------------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred             E---Ee-cCC---------------------------CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence            1   10 000                           1234577888887  455555557889999987 55442 233


Q ss_pred             ccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          166 AHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       166 ~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      .....+.++++ +++ .+++...++.|..+|. +++     .... .......+ ..+++++++++.++....+.|.+|+
T Consensus       143 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~-~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          143 NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK-----LEEYPLPTNAAAP-VGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCE-EEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc-----EEEeeCCCCCCCc-ceEEECCCCCEEEEccCCCEEEEEc
Confidence            33467788888 434 4445555788999998 444     2221 12223334 8999999998777777778899999


Q ss_pred             ccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591          243 GNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF  320 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  320 (353)
                      .... ..   ..........+.++..  +|++.++...++.|..|+.. ++. ... .+......+.+++++++    |.
T Consensus       216 ~~g~-~~---~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-~~~-~~~~~~~~~~~i~~~~~----g~  284 (300)
T 2qc5_A          216 TTGE-IS---EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTI-QEY-QLQTENAEPHGITFGKD----GS  284 (300)
T ss_dssp             TTCC-EE---EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-EEE-ECCSTTCCCCCEEECTT----SC
T ss_pred             CCCc-EE---EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE-EEE-ECCccCCccceeEeCCC----CC
Confidence            8322 11   1112222334555555  47766666677899999984 332 111 22334456889999998    88


Q ss_pred             EEEEccCCCeEEEEEc
Q 018591          321 LLYSGSLDKSLRVWWV  336 (353)
Q Consensus       321 ~l~s~~~dg~i~iw~~  336 (353)
                      +.++.. . .|..++.
T Consensus       285 l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          285 VWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EEEECS-S-EEEEEEE
T ss_pred             EEEEcc-C-ceEEeCC
Confidence            777665 4 6666664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.60  E-value=1.4e-12  Score=102.84  Aligned_cols=231  Identities=10%  Similarity=0.025  Sum_probs=145.9

Q ss_pred             ceEEEEEC--CcEEE-EEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           18 SVSSLALC--GEFIL-SASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        18 ~v~~~~~~--~~~l~-s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      ...+++++  |++++ +...++.|.+||..+.........+...+.+++++  ++.+++.. ++.|.+||.+......  
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~--  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV--  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE--
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee--
Confidence            67889996  67666 44678999999976554332222333467788887  55444444 8899999976653110  


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcc
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA  170 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  170 (353)
                          +..                          .....+..+++++  .++++...++.|.+|+..+.............
T Consensus       102 ----~~~--------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~  151 (270)
T 1rwi_B          102 ----LPF--------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLND  151 (270)
T ss_dssp             ----CCC--------------------------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCS
T ss_pred             ----eec--------------------------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCC
Confidence                000                          1224577888987  45555566789999986654433322233346


Q ss_pred             eEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc
Q 018591          171 VNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV  248 (353)
Q Consensus       171 v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  248 (353)
                      +.++++. ++ .+++...++.|.+||.....     ...........+ ..++++++|.++++...++.|.+|+......
T Consensus       152 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~p-~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          152 PDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-----QVVLPFTDITAP-WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCCEEECTTCCEEEEEGGGTEEEEECTTTCC-----EEECCCSSCCSE-EEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             ceeEEEeCCCCEEEEECCCCEEEEEecCCCc-----eEeecccCCCCc-eEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            7788883 34 55555667899999987665     222222222344 8999999998888877888999999876521


Q ss_pred             ceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591          249 RWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      .    .....+...+.++.+  +|+++++...++.|+++++...+
T Consensus       226 ~----~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          226 T----VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             E----ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             e----eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            1    111122233445544  58888888899999999987644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=5.9e-12  Score=102.51  Aligned_cols=207  Identities=13%  Similarity=0.082  Sum_probs=134.0

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCC----Cc
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQD----SR   77 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d----g~   77 (353)
                      ++....+.++...+.+++|+  +++++++..++.|.+||..+++.......+...+.+++++  ++.+++...+    +.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG  113 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred             cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence            34556677777788999996  7777788889999999998887766554556789999997  5566665555    58


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecC-------CCc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSW-------DKT  149 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~-------dg~  149 (353)
                      |.+||.+++....  .+...                            .+...+.++.+++ ..++.++.       .+.
T Consensus       114 i~~~d~~~~~~~~--~~~~~----------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A          114 IFAATENGDNLQD--IIEDL----------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             EEEECTTSCSCEE--EECSS----------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             EEEEeCCCCEEEE--EEccC----------------------------ccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            9999987665210  11000                            2335688899998 44444443       255


Q ss_pred             EEEEEcCCceeeeeccccCcceEEEEEeC-C-eE-EEEcCCCcEEEEeCCCC-Cccc-c--cceeeeeccCCceeeEEEE
Q 018591          150 LKVWRVADLKCLESIKAHDDAVNGLVASK-G-IV-YSASADGKIKAWGKELG-KSHC-H--SLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       150 v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l-~~~~~dg~i~iwd~~~~-~~~~-~--~~~~~~~~~~~~~v~~~~~  222 (353)
                      |..+|..+++... +......+..+++++ + .+ ++.+.++.|.+||.... .... .  .....+.++ .. +..+++
T Consensus       164 l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~-~~~i~~  240 (333)
T 2dg1_A          164 VYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG-PDSCCI  240 (333)
T ss_dssp             EEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE-EEEEEE
T ss_pred             EEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC-CCceEE
Confidence            6666665544333 222334578888843 3 34 45566889999998642 2100 0  000011111 23 388999


Q ss_pred             cCCCCeEEeecCCCcEEEeeccc
Q 018591          223 SDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       223 ~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                      ++++++.++...++.|.+||...
T Consensus       241 d~~G~l~v~~~~~~~v~~~d~~g  263 (333)
T 2dg1_A          241 DSDDNLYVAMYGQGRVLVFNKRG  263 (333)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTS
T ss_pred             CCCCCEEEEEcCCCEEEEECCCC
Confidence            99999888877788999999853

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.59  E-value=2.3e-13  Score=107.25  Aligned_cols=191  Identities=12%  Similarity=-0.002  Sum_probs=138.7

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccC-cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHD-DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS  216 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  216 (353)
                      +.|++++.|+.|.+||.++++.+.++..+. ..+.++.+ +++.++. +.++.|..||. +++     ....+..+....
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~-----~~W~~~~~~~~~   78 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGR-----ELWNIAAPAGCE   78 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSC-----EEEEEECCTTCE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCC-----EEEEEcCCCCcc
Confidence            678999999999999998999999998765 46788888 4444444 45788999999 676     555565543334


Q ss_pred             eeEEEEcCCCCeEEeecC-CCcEEEeeccccccceeeeeec--cccc--eeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591          217 LNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRWKLACET--KAHE--MAVLCVCLVGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~~~--~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      +.++.+.|+|+++++.+. ++.+..+|. .++..++.....  ..+.  ....+..++|+++++...++.|..||.+ ++
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            588999999999999877 777888876 343333322111  1111  1122445579999999999999999988 77


Q ss_pred             ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          292 KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .   +.++... ..+.++...++    ++++++++.++.|..+|..+++.+.+..
T Consensus       157 ~---~w~~~~~-~~~~~~~~~~~----g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          157 L---LNSVKLS-GTPFSSAFLDN----GDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             E---EEEEECS-SCCCEEEECTT----SCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             E---EEEEECC-CCccceeEcCC----CCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            4   3334333 35667788888    9999999999999999999888866553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=3.6e-12  Score=114.52  Aligned_cols=242  Identities=7%  Similarity=-0.062  Sum_probs=152.2

Q ss_pred             CccCceEEEEEC--CcEEEEEeCCC-----cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCc-------
Q 018591           14 GHVGSVSSLALC--GEFILSASQGK-----DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR-------   77 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~-------   77 (353)
                      +|...+..++|+  |++||.++.++     .|++||+.+++....... ...+..++|+  ++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCcccccccc
Confidence            354568889996  88888766543     899999999988764322 2236678887  778888877765       


Q ss_pred             ---------EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC
Q 018591           78 ---------IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW  146 (353)
Q Consensus        78 ---------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~  146 (353)
                               |++|++.++..... .+...+                           .|...+..+.|+|  ++|+.++.
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~-~v~~~~---------------------------~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDI-LCAEFP---------------------------DEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCE-EEECCT---------------------------TCTTCEEEEEECTTSCEEEEEEE
T ss_pred             ccccCCCCEEEEEECCCCcccce-EEeccC---------------------------CCCeEEEEEEEcCCCCEEEEEEE
Confidence                     99999876642111 111100                           2445577889998  66666554


Q ss_pred             -----CCcEEEEEcCC------ce-eeeeccccCcceEEEEE-eCCeEEEEcC----CCcEEEEeCCCCCcccccceeee
Q 018591          147 -----DKTLKVWRVAD------LK-CLESIKAHDDAVNGLVA-SKGIVYSASA----DGKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       147 -----dg~v~iwd~~~------~~-~~~~~~~~~~~v~~i~~-~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~  209 (353)
                           +..|++||+.+      +. ....+..+...+..... .++.++..+.    .+.|.+||+.++...   ....+
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l  329 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVL  329 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEE
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceec
Confidence                 67899999976      43 34555555555554323 4455554443    236999999876410   11233


Q ss_pred             eccCC-ceeeEEEEcCCCCeEEeecCCCc--EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEE-Ee---cCCC
Q 018591          210 EGHKD-VSLNSVVVSDDGKWVYGGGSDGF--VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLC-SG---SADK  280 (353)
Q Consensus       210 ~~~~~-~~v~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~-~~---~~dg  280 (353)
                      ..+.. ..+..++|++++.++++...++.  |.+|++.++.    ....+..+...+..+++  ++..++ +.   ...+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~----~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  405 (710)
T 2xdw_A          330 VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPG  405 (710)
T ss_dssp             ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC----EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred             cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC----EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCC
Confidence            33333 34578899888888888888885  5556664552    22333344556666655  455544 22   2457


Q ss_pred             eEEEEecCCCc
Q 018591          281 SIGIWKREAFG  291 (353)
Q Consensus       281 ~i~iw~~~~~~  291 (353)
                      .|+.||+.+++
T Consensus       406 ~i~~~d~~tg~  416 (710)
T 2xdw_A          406 IIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTSSS
T ss_pred             EEEEEECCCCc
Confidence            89999998765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=9.2e-12  Score=111.90  Aligned_cols=268  Identities=11%  Similarity=0.005  Sum_probs=163.0

Q ss_pred             ECCcEEEEEeCC-C----cEEEEeCCCceeeEEe------ccCceeeEEEEEe--CCEEEEecCCC-----cEEEEEccc
Q 018591           24 LCGEFILSASQG-K----DIIVWQQPDLRMFTKF------GHGDGSVKAVVTV--GNKVFTAHQDS-----RIRVWKVSR   85 (353)
Q Consensus        24 ~~~~~l~s~~~d-g----~v~vwd~~~~~~~~~~------~~~~~~v~~~~~~--~~~l~s~~~dg-----~i~~w~~~~   85 (353)
                      .+|++++-...+ +    .+.+.+...++....+      ..|...+..+.|+  +++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            567666544432 2    3444454445443332      2244568888888  77887655433     899999988


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCc--------------
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKT--------------  149 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~--------------  149 (353)
                      ++.....    +                            .+ ..+..++|+|  +.|+.++.++.              
T Consensus       161 g~~~~~~----~----------------------------~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          161 AKELPDV----L----------------------------ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             TEEEEEE----E----------------------------EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             CCCCccc----c----------------------------cC-cccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence            7621110    0                            11 1255788998  67888777765              


Q ss_pred             --EEEEEcCCce----eeeeccccCcceEEEEEeCC--eEEEEcC-----CCcEEEEeCCC------CCcccccceeeee
Q 018591          150 --LKVWRVADLK----CLESIKAHDDAVNGLVASKG--IVYSASA-----DGKIKAWGKEL------GKSHCHSLKGILE  210 (353)
Q Consensus       150 --v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~--~l~~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~  210 (353)
                        |++|++.+++    .+.....+...+..+.|+++  .++..+.     +..|++||+.+      +..    ....+.
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~l~  283 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL----KWVKLI  283 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC----CCEEEE
T ss_pred             CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc----ceEEee
Confidence              9999998765    22233334556778888443  5555543     56899999976      320    123344


Q ss_pred             ccCCceeeEEEEcCCCCeEEeecCC----CcEEEeecccccc-ceeeeeeccccc--eeEEEEEEc--CcEEEEecCCCe
Q 018591          211 GHKDVSLNSVVVSDDGKWVYGGGSD----GFVMGWEGNVEIV-RWKLACETKAHE--MAVLCVCLV--GEFLCSGSADKS  281 (353)
Q Consensus       211 ~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~-~~~~~~~~~~~~--~~v~~~~~~--~~~l~~~~~dg~  281 (353)
                      .+.... .. .|+|+|+.|+..+..    +.|.+||+.++.. .++.   +..+.  ..+..+.+.  +.++++...++.
T Consensus       284 ~~~~~~-~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~  358 (710)
T 2xdw_A          284 DNFEGE-YD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV---LVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (710)
T ss_dssp             CSSSSC-EE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             CCCCcE-EE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee---ccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence            444433 33 588888877765543    3699999877531 1111   12222  245555553  567777777875


Q ss_pred             --EEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE-Ec---cCCCeEEEEEcCCCC
Q 018591          282 --IGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY-SG---SLDKSLRVWWVSKQS  340 (353)
Q Consensus       282 --i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~-s~---~~dg~i~iw~~~~~~  340 (353)
                        |++|++.+++   .+..+..+.+.+..+.++|+    +..++ +.   ...++|..||+.+++
T Consensus       359 ~~l~~~~~~~g~---~~~~l~~~~~~v~~~~~s~d----~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          359 NTLQLHDLATGA---LLKIFPLEVGSVVGYSGQKK----DTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEETTTCC---EEEEECCCSSEEEEEECCTT----CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEECCCCC---EEEecCCCCceEEEEecCCC----CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence              5666765665   33445556778999999998    65544 32   345799999998876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=1.2e-12  Score=107.23  Aligned_cols=182  Identities=10%  Similarity=0.004  Sum_probs=118.6

Q ss_pred             ceEEEEEeC--CeEEEecCC---C--cEEEEEcCCceeeeeccccCcceEEEEEeC-C-eEEEEcC--------------
Q 018591          130 SISCLTVYN--GLIYSGSWD---K--TLKVWRVADLKCLESIKAHDDAVNGLVASK-G-IVYSASA--------------  186 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~~~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~-~l~~~~~--------------  186 (353)
                      .+..+.|+|  +.|+..+.+   +  .|.+||+.+++....... .. +..+.|++ + .|+.++.              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            467789998  567766543   2  488889888776555443 34 89999943 3 5666553              


Q ss_pred             -------------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-------cEEEeecccc
Q 018591          187 -------------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-------FVMGWEGNVE  246 (353)
Q Consensus       187 -------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~  246 (353)
                                   ...|.+||+.+++     ....+.. . . +..++|+|++ +++++..++       ...+|.+.++
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~-----~~~~l~~-~-~-~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~  208 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEE-----VIEEFEK-P-R-FSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG  208 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTE-----EEEEEEE-E-T-TCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred             ceeecCcccccCccceEEEEECCCCe-----EEeeecC-C-C-cccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence                         2568999998776     3122332 2 3 4889999999 777775542       3455554433


Q ss_pred             ccceeeeeeccccceeEEEEEEcCcEEEEecCC--------CeEEEEecCCCcceEEeccccCCCcCeEE-EEeecCCCC
Q 018591          247 IVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD--------KSIGIWKREAFGKLCRVGAITGHEGPVKC-LQASPNAVG  317 (353)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~  317 (353)
                      .  ...   +..+ ..+..++++|++|+.++.+        ..|.+||  +++   ......+|...+.. +.|+ +   
T Consensus       209 ~--~~~---l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~---~~~l~~~~~~~~~~~~~~s-d---  273 (347)
T 2gop_A          209 K--EEK---MFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE---VMGILDEVDRGVGQAKIKD-G---  273 (347)
T ss_dssp             E--EEE---EEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC---EEESSTTCCSEEEEEEEET-T---
T ss_pred             c--eEE---eccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc---eEeccccCCcccCCccEEc-C---
Confidence            1  111   1122 4445558899988776644        4688888  443   22234456777886 8999 8   


Q ss_pred             CCeEEEEccCCCeEEEEEcCCCC
Q 018591          318 GGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       318 ~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                       + ++++++.++.+++| +.+++
T Consensus       274 -g-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          274 -K-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             -E-EEEEEEETTEEEEE-EESSS
T ss_pred             -c-EEEEEecCCcEEEE-EcCCc
Confidence             8 99999999999999 87443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=4.8e-13  Score=119.86  Aligned_cols=241  Identities=11%  Similarity=-0.060  Sum_probs=149.0

Q ss_pred             CccCceEEEEEC--CcEEE-----EEeCCCcEEEEeCCCceeeEEeccCceee--EEEEEe--CCEEEEecCCCc-----
Q 018591           14 GHVGSVSSLALC--GEFIL-----SASQGKDIIVWQQPDLRMFTKFGHGDGSV--KAVVTV--GNKVFTAHQDSR-----   77 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~-----s~~~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~s~~~dg~-----   77 (353)
                      +|...+.+++|+  |++||     .|+.+..|++||+.+++.+.  ..+...+  ..++|+  ++.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            466678999996  88888     45556789999999988651  1111222  567887  778888887765     


Q ss_pred             --------EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC
Q 018591           78 --------IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD  147 (353)
Q Consensus        78 --------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d  147 (353)
                              |++|++.++..... ++...                           ..+...+..+.|++  ++|+.++.+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~-lv~~~---------------------------~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDT-VVHER---------------------------TGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCE-EEECC---------------------------CCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             ccCCCCCEEEEEECCCCchhce-EEEec---------------------------CCCCEEEEEEEECCCCCEEEEEEeC
Confidence                    99999987652211 11111                           03556788899999  677776655


Q ss_pred             C----cEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcC----CCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          148 K----TLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASA----DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       148 g----~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                      +    .|.+||..+++. ..+..+...+....++++.++..+.    ++.|.+||+.++...  ........+....+..
T Consensus       248 ~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~l~~  324 (695)
T 2bkl_A          248 GWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARA--SWKEIVPEDSSASLLS  324 (695)
T ss_dssp             TTTEEEEEEECTTCSSC-EEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGG--GCEEEECCCSSCEEEE
T ss_pred             CCCceEEEEEcCCCCce-EEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCcc--CCeEEecCCCCCeEEE
Confidence            5    677777655543 3344455555555564443444332    578999999776411  0122333332444578


Q ss_pred             EEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecccc-ceeEEEEE--EcCcEEE----EecCCCeEEEEecCCCc
Q 018591          220 VVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVC--LVGEFLC----SGSADKSIGIWKREAFG  291 (353)
Q Consensus       220 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~--~~~~~l~----~~~~dg~i~iw~~~~~~  291 (353)
                      ++++ ++.++++...|+..++|.+....   .....+..+ ...+..++  ++++.++    +....++|++||+.+++
T Consensus       325 ~~~~-~~~lv~~~~~dg~~~l~~~~~~g---~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          325 VSIV-GGHLSLEYLKDATSEVRVATLKG---KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEEETTC---CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEE-CCEEEEEEEECCEEEEEEEeCCC---CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8888 67788888889988888665211   112222222 34444444  3566555    23345789999998865

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=5.3e-12  Score=102.57  Aligned_cols=283  Identities=10%  Similarity=0.057  Sum_probs=175.6

Q ss_pred             CCcEEEEEeC-----CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCc
Q 018591           25 CGEFILSASQ-----GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSS   87 (353)
Q Consensus        25 ~~~~l~s~~~-----dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~   87 (353)
                      +++.++....     ++.|.+.|..+++.+..+.....+ . +.++  +++++.+.          .++.|.+||..+.+
T Consensus        43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            4666666654     689999999999999988765555 3 7776  77777665          36789999998876


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES  163 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~  163 (353)
                           .+..++....                  .+.  .....-..+.++|  ++++++..  ++.|.++|+.+++.+.+
T Consensus       121 -----v~~~I~v~~g------------------~r~--~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~t  175 (386)
T 3sjl_D          121 -----PTADIELPDA------------------PRF--LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  175 (386)
T ss_dssp             -----EEEEEEETTC------------------CCC--CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             -----EEEEEECCCc------------------ccc--ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEE
Confidence                 3222211000                  000  0011233577887  66666653  68999999999999988


Q ss_pred             ccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEc-CCCCeEEeecCCCcEE
Q 018591          164 IKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVS-DDGKWVYGGGSDGFVM  239 (353)
Q Consensus       164 ~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~  239 (353)
                      +....  . ...+  ....+++.+.||++.+.++.. ++.. ......+............|. ++|++++ .+.+|.+.
T Consensus       176 I~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~  250 (386)
T 3sjl_D          176 LDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIH  250 (386)
T ss_dssp             EECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEE
T ss_pred             EECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEE-EeecceeccccccccccceeEcCCCcEEE-EeCCCEEE
Confidence            85422  1 2223  344777888999999999976 4411 000011111111221234554 6776555 44478999


Q ss_pred             Eeeccccccceeeeee----------ccccceeEEEEEEcCcEEEEecC----------CCeEEEEecCCCcceEEeccc
Q 018591          240 GWEGNVEIVRWKLACE----------TKAHEMAVLCVCLVGEFLCSGSA----------DKSIGIWKREAFGKLCRVGAI  299 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~  299 (353)
                      +.|.............          ..........+.++++.++....          .+.|.++|+.+.+....+   
T Consensus       251 v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i---  327 (386)
T 3sjl_D          251 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF---  327 (386)
T ss_dssp             EEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE---
T ss_pred             EEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE---
Confidence            9999765321111000          01112234566677776666532          367999999998844333   


Q ss_pred             cCCCcCeEEEEeecCCCCCCe-EEEE-ccCCCeEEEEEcCCCCCcccccC
Q 018591          300 TGHEGPVKCLQASPNAVGGGF-LLYS-GSLDKSLRVWWVSKQSSTSDSEE  347 (353)
Q Consensus       300 ~~h~~~v~~~~~~~~~~~~~~-~l~s-~~~dg~i~iw~~~~~~~~~~~~~  347 (353)
                      .- ...+.+|+++||    ++ +|++ ...++.|.++|..+++.+.+.+.
T Consensus       328 ~v-g~~~~~lavs~D----~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          328 EM-GHEIDSINVSQD----EKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             EE-EEEECEEEECSS----SSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EC-CCCcceEEECCC----CCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence            21 236889999999    75 5555 45689999999999998876653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.55  E-value=1.8e-13  Score=114.33  Aligned_cols=249  Identities=12%  Similarity=-0.029  Sum_probs=148.0

Q ss_pred             EEEeCCCceeeEEeccCcee-----eEEEEEe--CCEEEEecC-C--CcEEEEEcccCccceeEEeeccccccceeeeec
Q 018591           39 IVWQQPDLRMFTKFGHGDGS-----VKAVVTV--GNKVFTAHQ-D--SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFM  108 (353)
Q Consensus        39 ~vwd~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~-d--g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (353)
                      ...|..+++.+..+..+...     +..++|+  +++|+.... +  ..|.+||+.+++..   .   +.          
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~---l~----------   76 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---Q---LT----------   76 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---E---CC----------
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---E---ee----------
Confidence            34477888877777655333     5566676  777766543 2  36777887765411   1   00          


Q ss_pred             ccceeEeecccceeeeeecCCc-eEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEE---EE-------
Q 018591          109 KQSNYVQTRRHHKRLWIEHADS-ISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNG---LV-------  175 (353)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~---i~-------  175 (353)
                                       .+... ...+.|+|  +.|+.++.++.|++||+.+++.......+......   ++       
T Consensus        77 -----------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           77 -----------------EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             -----------------CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             -----------------cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence                             11112 22357787  68888888889999999887765555433332211   21       


Q ss_pred             ---------EeC--CeEEEE-----cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCC---
Q 018591          176 ---------ASK--GIVYSA-----SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSD---  235 (353)
Q Consensus       176 ---------~~~--~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d---  235 (353)
                               +++  +.++..     ..+..|.+||+.+++     ..... .+... +..+.|+| +++.|+..+.+   
T Consensus       140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~~~~-~~~~~-~~~~~~sp~dg~~l~~~~~~~~~  212 (396)
T 3c5m_A          140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE-----LEVIH-QDTAW-LGHPIYRPFDDSTVGFCHEGPHD  212 (396)
T ss_dssp             EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC-----EEEEE-EESSC-EEEEEEETTEEEEEEEEECSCSS
T ss_pred             ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc-----EEeec-cCCcc-cccceECCCCCCEEEEEecCCCC
Confidence                     111  122211     355689999998876     33222 23333 48899999 78766665443   


Q ss_pred             ---CcEEEeeccccccceeeeeecccc-ceeE--EEEEEcCcEEEEecCC-----CeEEEEecCCCcceEEeccccCCCc
Q 018591          236 ---GFVMGWEGNVEIVRWKLACETKAH-EMAV--LCVCLVGEFLCSGSAD-----KSIGIWKREAFGKLCRVGAITGHEG  304 (353)
Q Consensus       236 ---g~i~i~d~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~  304 (353)
                         ..|.+||+..+..  ...  .... ...+  ..++++|++|+.++.+     +.|++||+.+++.. .+..+.+   
T Consensus       213 ~~~~~l~~~d~~~~~~--~~l--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~---  284 (396)
T 3c5m_A          213 LVDARMWLVNEDGSNV--RKI--KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE-EVMVMPP---  284 (396)
T ss_dssp             SCSCCCEEEETTSCCC--EES--SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE-EEEECCS---
T ss_pred             CCCceEEEEECCCCce--eEe--eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE-EeeeCCC---
Confidence               3688888765521  111  1111 2234  3455568877766543     55999999876532 2322222   


Q ss_pred             CeEEEEeec-CCCCCCeEEEEcc----------------CCCeEEEEEcCCCCC
Q 018591          305 PVKCLQASP-NAVGGGFLLYSGS----------------LDKSLRVWWVSKQSS  341 (353)
Q Consensus       305 ~v~~~~~~~-~~~~~~~~l~s~~----------------~dg~i~iw~~~~~~~  341 (353)
                       .. +.|+| +    ++++++++                .++.|.+||+.+++.
T Consensus       285 -~~-~~~s~~d----g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          285 -CS-HLMSNFD----GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             -EE-EEEECSS----SSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             -CC-CCccCCC----CceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence             23 88999 8    88888754                347899999987654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.53  E-value=7.4e-13  Score=107.99  Aligned_cols=170  Identities=14%  Similarity=0.055  Sum_probs=125.0

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCce-----------eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLR-----------MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~   84 (353)
                      +++.++++  ..++++|+.+ .+++|++++.+           ...... +.. |+.++|+++.|+++ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCFHGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence            68889996  7789999987 56669865433           212333 445 99999988889888 88999999998


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeec
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESI  164 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  164 (353)
                      +......                                ...|...+.++.+.+..+++++.||.|.+||+.++....  
T Consensus       115 sl~~~~~--------------------------------~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~--  160 (388)
T 1xip_A          115 ELSEFRT--------------------------------VTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ--  160 (388)
T ss_dssp             STTCEEE--------------------------------EEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--
T ss_pred             hhhccCc--------------------------------cceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--
Confidence            7652111                                114556677877777568999999999999998776643  


Q ss_pred             cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeee------e---ccCCceeeEEEEcCCCCeEEe
Q 018591          165 KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGIL------E---GHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       165 ~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~---~~~~~~v~~~~~~~~~~~l~~  231 (353)
                        +...|++++|+++-++.|..||++++|+.......   ....+      .   +|. ..|.++.|.+++.++++
T Consensus       161 --~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~---~k~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 --LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEME---KQFEFSLPSELEELPVEE-YSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             --EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEE---EEEEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEE
T ss_pred             --ccCCceEEEEcCCceEEEEcCCcEEEEcCCCcccc---ccceecCCcccccccCCC-eeEEEEEEecCCeEEEE
Confidence              45689999997666889999999999988776510   02222      2   233 44599999999988876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.53  E-value=9.8e-12  Score=102.85  Aligned_cols=283  Identities=10%  Similarity=0.045  Sum_probs=177.7

Q ss_pred             CCcEEEEEeC-C----CcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCc
Q 018591           25 CGEFILSASQ-G----KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSS   87 (353)
Q Consensus        25 ~~~~l~s~~~-d----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~   87 (353)
                      +++.++.... +    +.|.+.|..+++.+..+.....+  .+.++  +++++.+.          .++.|.++|..+.+
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            4554544443 3    69999999999999998765555  67777  77777665          46789999998876


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeee
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLES  163 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~  163 (353)
                           .+..++....                  .+.  .....-..+.+++  ++++++..  ++.|.+.|+.+++.+.+
T Consensus       161 -----vv~~I~v~g~------------------~r~--~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~  215 (426)
T 3c75_H          161 -----PIADIELPDA------------------PRF--LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRM  215 (426)
T ss_dssp             -----EEEEEEETTC------------------CCC--CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             -----EEEEEECCCc------------------ccc--ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence                 2222211000                  000  0011223567777  67777653  58899999999999888


Q ss_pred             ccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          164 IKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       164 ~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      +.-...  ..+.. .+..+++.+.||.+.+.+..+++.... ....+..........+.+.+++..++.....+.+.+.|
T Consensus       216 I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD  292 (426)
T 3c75_H          216 LDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADGETKVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD  292 (426)
T ss_dssp             EECCSE--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred             EEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence            764221  12222 334677788899999999855541100 00112222222223467889988877777889999999


Q ss_pred             ccccccceeeeeec----------cccceeEEEEEEcCcEEEEec----------CCCeEEEEecCCCcceEEeccccCC
Q 018591          243 GNVEIVRWKLACET----------KAHEMAVLCVCLVGEFLCSGS----------ADKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       243 ~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                      ..............          .........++++++.+++..          .++.|.++|..+.+..   ..+.. 
T Consensus       293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv---~~I~v-  368 (426)
T 3c75_H          293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI---NKIEL-  368 (426)
T ss_dssp             ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEE-
T ss_pred             ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE---EEEEC-
Confidence            86542111000000          011111247788877666553          2468999999998844   33321 


Q ss_pred             CcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcCCCCCcccc
Q 018591          303 EGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~  345 (353)
                      ......+.|+||    ++ +++++. .++.|.++|+.+.+.+.+.
T Consensus       369 g~~P~gia~spD----g~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          369 GHEIDSINVSQD----AEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEECEEEECCS----SSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCcCeEEEccC----CCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            224889999999    87 787777 5999999999999988774

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=1.2e-10  Score=93.82  Aligned_cols=239  Identities=10%  Similarity=0.049  Sum_probs=146.3

Q ss_pred             eeEEEEEe--CCEEEE-------ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecC
Q 018591           58 SVKAVVTV--GNKVFT-------AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA  128 (353)
Q Consensus        58 ~v~~~~~~--~~~l~s-------~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (353)
                      ...+++|+  +..+++       ...++.|..||..+++.....   . +.                        ..++.
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~---~-~~------------------------~~~~~   70 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---K-PE------------------------VNGYG   70 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---C-CE------------------------ETTEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE---e-cc------------------------cCCCC
Confidence            45677776  555555       467789999998766521110   0 00                        00234


Q ss_pred             CceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee-ccc----cCcceEEEEE-eCCeEE-EEcCC------------
Q 018591          129 DSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES-IKA----HDDAVNGLVA-SKGIVY-SASAD------------  187 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~-~~~----~~~~v~~i~~-~~~~l~-~~~~d------------  187 (353)
                      ..+.++.+++  +.+..++..+.|.+||.. ++.... ...    ....+.++++ +++.++ +...+            
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence            5678888887  466666655689999987 665433 221    1245788998 444444 44333            


Q ss_pred             ---CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEc----CCCCeEEe-ecCCCcEEEeecc-ccccc-eeeeeecc
Q 018591          188 ---GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVS----DDGKWVYG-GGSDGFVMGWEGN-VEIVR-WKLACETK  257 (353)
Q Consensus       188 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~-~~~dg~i~i~d~~-~~~~~-~~~~~~~~  257 (353)
                         +.|..||.. ++     .... ..+...+ ..++++    |+++.++. ...++.|.+|+.. .+... ......+.
T Consensus       150 ~~~~~l~~~~~~-g~-----~~~~-~~~~~~~-~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  221 (314)
T 1pjx_A          150 EKFGSIYCFTTD-GQ-----MIQV-DTAFQFP-NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             SSCEEEEEECTT-SC-----EEEE-EEEESSE-EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             CCCCeEEEECCC-CC-----EEEe-ccCCCCc-ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence               567777765 43     2222 2222333 789999    99976554 4567899999976 23111 11222223


Q ss_pred             ccc-eeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEE
Q 018591          258 AHE-MAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRV  333 (353)
Q Consensus       258 ~~~-~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~i  333 (353)
                      .+. .....+.+  +|+++++...++.|.+||..+++.   +..+..+...+.+++|+|+    ++ ++++...++.|..
T Consensus       222 ~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~i~~~~d----g~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP---KMRIRCPFEKPSNLHFKPQ----TKTIFVTEHENNAVWK  294 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC---SEEEECSSSCEEEEEECTT----SSEEEEEETTTTEEEE
T ss_pred             CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE---eEEEeCCCCCceeEEECCC----CCEEEEEeCCCCeEEE
Confidence            222 33444544  577777777888999999886653   3334445578999999998    87 5556666789999


Q ss_pred             EEcCCCC
Q 018591          334 WWVSKQS  340 (353)
Q Consensus       334 w~~~~~~  340 (353)
                      |++....
T Consensus       295 ~~~~~~g  301 (314)
T 1pjx_A          295 FEWQRNG  301 (314)
T ss_dssp             EECSSCB
T ss_pred             EeCCCCC
Confidence            9987643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.50  E-value=7.3e-11  Score=104.77  Aligned_cols=320  Identities=11%  Similarity=0.084  Sum_probs=184.2

Q ss_pred             CCCCceeeeeeCccC-----------ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC-c----eeeE-EEEEe
Q 018591            3 CKSHRSLAVLSGHVG-----------SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG-D----GSVK-AVVTV   65 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~-----------~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~----~~v~-~~~~~   65 (353)
                      ..+|+.+..++....           .-..+++.+..++.++.|+.|..+|..+|+.+..+..+ .    ..+. .....
T Consensus        94 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~  173 (677)
T 1kb0_A           94 TRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF  173 (677)
T ss_dssp             TTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE
T ss_pred             CCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE
Confidence            456777766664322           11345566788899999999999999999999888654 1    1221 22234


Q ss_pred             CCEEEEecC------CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee--ecCCceEEEEEe
Q 018591           66 GNKVFTAHQ------DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI--EHADSISCLTVY  137 (353)
Q Consensus        66 ~~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~  137 (353)
                      ++.++.++.      +|.|+.+|.++++..-......................  ..-......+.  +.......++++
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~--~~w~~~g~~~~~~~g~~~w~~~~~d  251 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA--RTWDPSGKWWEAGGGGTMWDSMTFD  251 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH--TTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc--ccccccCceeEeCCCcccccceeEc
Confidence            666666654      78999999998873211111000000000000000000  00000000000  122222356666


Q ss_pred             C--CeEEEecCCC-------------------cEEEEEcCCceeeeeccc--cC--------cceE-EEEEeC---CeEE
Q 018591          138 N--GLIYSGSWDK-------------------TLKVWRVADLKCLESIKA--HD--------DAVN-GLVASK---GIVY  182 (353)
Q Consensus       138 ~--~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~--~~--------~~v~-~i~~~~---~~l~  182 (353)
                      +  +.++.+..++                   .|..+|.++++.+..++.  |.        .++. .....+   ..++
T Consensus       252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~  331 (677)
T 1kb0_A          252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVIL  331 (677)
T ss_dssp             TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEE
Confidence            6  6777776654                   599999999998877653  21        1111 111122   4788


Q ss_pred             EEcCCCcEEEEeCCCCCcccccceeeeecc----------CCce------------------------eeEEEEcCCCCe
Q 018591          183 SASADGKIKAWGKELGKSHCHSLKGILEGH----------KDVS------------------------LNSVVVSDDGKW  228 (353)
Q Consensus       183 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~------------------------v~~~~~~~~~~~  228 (353)
                      .++.+|.++++|.++++.     +......          ...+                        ...++++|+..+
T Consensus       332 ~~~~~G~l~~lD~~tG~~-----l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~  406 (677)
T 1kb0_A          332 HAPKNGFFFVLDRTNGKF-----ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL  406 (677)
T ss_dssp             ECCTTSEEEEEETTTCCE-----EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred             EECCCCEEEEEECCCCCE-----eccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence            999999999999999883     2111100          0000                        025788998888


Q ss_pred             EEeecC-------------------------------------------CCcEEEeeccccccceeeeeeccccceeEEE
Q 018591          229 VYGGGS-------------------------------------------DGFVMGWEGNVEIVRWKLACETKAHEMAVLC  265 (353)
Q Consensus       229 l~~~~~-------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  265 (353)
                      +++...                                           .|.|..||+.+++..++.......   .-..
T Consensus       407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~---~~g~  483 (677)
T 1kb0_A          407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW---NGGT  483 (677)
T ss_dssp             EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC---CCCE
T ss_pred             EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCC---cCcc
Confidence            877532                                           277999999998766655432211   1123


Q ss_pred             EEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccC----------------C
Q 018591          266 VCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSL----------------D  328 (353)
Q Consensus       266 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~----------------d  328 (353)
                      +...+.+++.++.||.+++||..+++.+..+..  ++.....-+.|.++    |+ ++++.+.                .
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~~y~~~----G~~~v~~~~G~~~~~~~~~~~~~~~~~  557 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT--GTGVVAAPSTYMVD----GRQYVSVAVGWGGVYGLAARATERQGP  557 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEET----TEEEEEEEECCCHHHHHHCCSCSCCCC
T ss_pred             eEeCCCEEEEECCCCcEEEEECCCCceeeeeeC--CCCcccCCEEEEeC----CEEEEEEeccCCccccccccccccCCC
Confidence            556788889999999999999999985443322  22223344566677    65 4444222                4


Q ss_pred             CeEEEEEcCC
Q 018591          329 KSLRVWWVSK  338 (353)
Q Consensus       329 g~i~iw~~~~  338 (353)
                      +.+.+|.+..
T Consensus       558 ~~l~~f~l~~  567 (677)
T 1kb0_A          558 GTVYTFVVGG  567 (677)
T ss_dssp             CEEEEEEETC
T ss_pred             CeEEEEeccc
Confidence            6888898874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=1.2e-10  Score=93.85  Aligned_cols=244  Identities=7%  Similarity=0.039  Sum_probs=147.9

Q ss_pred             eeeCccCceEEEEEC--CcEEEE-------EeCCCcEEEEeCCCceeeEEec----cCceeeEEEEEe-C-CEEEEecCC
Q 018591           11 VLSGHVGSVSSLALC--GEFILS-------ASQGKDIIVWQQPDLRMFTKFG----HGDGSVKAVVTV-G-NKVFTAHQD   75 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s-------~~~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~-~-~~l~s~~~d   75 (353)
                      .+...-....+++|+  ++++++       +..++.|.+||..+++......    ++...+..++++ . ..++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~   91 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence            344455567899996  677777       5778999999988877653322    244668888887 4 566666655


Q ss_pred             CcEEEEEcccCccceeEEe-eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC-----
Q 018591           76 SRIRVWKVSRSSENVFRLV-DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD-----  147 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d-----  147 (353)
                      +.|.+||.+ ++.   ... ......                         .....+.++++++  .++++...+     
T Consensus        92 ~~l~~~d~~-g~~---~~~~~~~~~~-------------------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  142 (314)
T 1pjx_A           92 LGLLVVQTD-GTF---EEIAKKDSEG-------------------------RRMQGCNDCAFDYEGNLWITAPAGEVAPA  142 (314)
T ss_dssp             TEEEEEETT-SCE---EECCSBCTTS-------------------------CBCBCCCEEEECTTSCEEEEECBCBCTTS
T ss_pred             CCEEEEeCC-CCE---EEEEeccCCC-------------------------ccccCCcCEEECCCCCEEEEecCcccccc
Confidence            578899987 441   111 000000                         1223467888887  444444433     


Q ss_pred             ----------CcEEEEEcCCceeeeeccccCcceEEEEEe----CC--eE-EEEcCCCcEEEEeCC-CCCcccccceeee
Q 018591          148 ----------KTLKVWRVADLKCLESIKAHDDAVNGLVAS----KG--IV-YSASADGKIKAWGKE-LGKSHCHSLKGIL  209 (353)
Q Consensus       148 ----------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~----~~--~l-~~~~~dg~i~iwd~~-~~~~~~~~~~~~~  209 (353)
                                +.|..||.. ++..... .+......+++.    ++  .+ ++...++.|.+||.. ++..........+
T Consensus       143 ~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~  220 (314)
T 1pjx_A          143 DYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             CCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence                      567777765 4443322 233445777776    54  44 444567899999986 3321111112222


Q ss_pred             eccC-CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCc-EEEEecCCCeEEEE
Q 018591          210 EGHK-DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGE-FLCSGSADKSIGIW  285 (353)
Q Consensus       210 ~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iw  285 (353)
                      ..+. ..+ ..++++++|++.++...++.|.+||..++..    ......+...+.++.+  +++ ++++...++.|..|
T Consensus       221 ~~~~~~~p-~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~  295 (314)
T 1pjx_A          221 PGTHEGGA-DGMDFDEDNNLLVANWGSSHIEVFGPDGGQP----KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             CCCSSCEE-EEEEEBTTCCEEEEEETTTEEEEECTTCBSC----SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCCCCCC-CceEECCCCCEEEEEcCCCEEEEEcCCCCcE----eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence            2332 334 8899999998888877788999999885532    2222233344555554  577 44555567899999


Q ss_pred             ecCCC
Q 018591          286 KREAF  290 (353)
Q Consensus       286 ~~~~~  290 (353)
                      ++...
T Consensus       296 ~~~~~  300 (314)
T 1pjx_A          296 EWQRN  300 (314)
T ss_dssp             ECSSC
T ss_pred             eCCCC
Confidence            98754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.49  E-value=6e-10  Score=89.04  Aligned_cols=233  Identities=11%  Similarity=0.083  Sum_probs=148.8

Q ss_pred             cCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCce
Q 018591           54 HGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI  131 (353)
Q Consensus        54 ~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  131 (353)
                      .+...+.+++++  ++..++...++.|..||.. +..   .... .+                           .+...+
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~---~~~~-~~---------------------------~~~~~~   59 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI---TEYP-LP---------------------------TPDAKV   59 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE---EEEE-CS---------------------------STTCCE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe---EEec-CC---------------------------cccCce
Confidence            344678888887  5555555557899999987 431   1110 00                           133567


Q ss_pred             EEEEEeC--CeEEEecCCCcEEEEEcCCcee-eeeccccCcceEEEEEe-CC-eEEEEcCCCcEEEEeCCCCCcccccce
Q 018591          132 SCLTVYN--GLIYSGSWDKTLKVWRVADLKC-LESIKAHDDAVNGLVAS-KG-IVYSASADGKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       132 ~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~i~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~  206 (353)
                      .++++++  ..+++...++.|..||.. ++. ...+......+.++++. ++ .+++...++.|..||. +++     ..
T Consensus        60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-----~~  132 (299)
T 2z2n_A           60 MCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-----IR  132 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EE
T ss_pred             eeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-----EE
Confidence            8889887  445554557889999976 332 12222245578889884 44 4455556789999998 444     22


Q ss_pred             ee-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEE
Q 018591          207 GI-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIG  283 (353)
Q Consensus       207 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  283 (353)
                      .. .......+ ..++++++++..++...++.|..||. ++....   .........+..+..  ++++.++...++.|.
T Consensus       133 ~~~~~~~~~~~-~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          133 EYELPNKGSYP-SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             EEECSSTTCCE-EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             EecCCCCCCCC-ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence            11 12222334 89999999988887777889999998 442111   112222333445555  477777766788999


Q ss_pred             EEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          284 IWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       284 iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +||. +++. .. .....+...+.+++++++    |.++++...++.|..|+..
T Consensus       208 ~~~~-~g~~-~~-~~~~~~~~~~~~i~~~~~----g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          208 RITT-SGEI-TE-FKIPTPNARPHAITAGAG----IDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EECT-TCCE-EE-EECSSTTCCEEEEEECST----TCEEEEETTTTEEEEEETT
T ss_pred             EECC-CCcE-EE-EECCCCCCCceeEEECCC----CCEEEeccCCceEEEECCC
Confidence            9998 5542 12 223345567999999998    8877777678899999973

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.49  E-value=1.9e-11  Score=108.68  Aligned_cols=283  Identities=12%  Similarity=0.081  Sum_probs=172.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----------eEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----------VKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .+..|+.++.++.|..+|..+|+.+..+..+...           -..+...+..++.++.|+.|..+|.++++..-...
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~  148 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD  148 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence            4667788888999999999999999888653221           12344568899999999999999999887321111


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec------CCCcEEEEEcCCceeeeecccc
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS------WDKTLKVWRVADLKCLESIKAH  167 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~~~  167 (353)
                      .. .....                     .+.....+    ....+.++++.      .+|.|+.||.++++.+..+...
T Consensus       149 ~~-~~~~~---------------------~~~~~~sP----~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  202 (689)
T 1yiq_A          149 TR-ADHKR---------------------SYTITGAP----RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTV  202 (689)
T ss_dssp             CC-SCTTS---------------------CCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             Cc-CCCCC---------------------CccccCCc----EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEeccc
Confidence            10 00000                     00000111    11235555554      3689999999999988766421


Q ss_pred             C-------------------------------cceEEEEEe--CCeEEEEcCCCc-------------------EEEEeC
Q 018591          168 D-------------------------------DAVNGLVAS--KGIVYSASADGK-------------------IKAWGK  195 (353)
Q Consensus       168 ~-------------------------------~~v~~i~~~--~~~l~~~~~dg~-------------------i~iwd~  195 (353)
                      .                               .....+++.  .+.++.++.++.                   |..+|.
T Consensus       203 ~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~  282 (689)
T 1yiq_A          203 PGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA  282 (689)
T ss_dssp             CCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET
T ss_pred             CCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc
Confidence            0                               001245553  457888877763                   999999


Q ss_pred             CCCCcccccceeeeec--cC------CceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeeec--------
Q 018591          196 ELGKSHCHSLKGILEG--HK------DVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACET--------  256 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------  256 (353)
                      ++++     ..-.++.  +.      ...........+|+   .++.++.+|.++++|..+++..+......        
T Consensus       283 ~TG~-----~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          283 DTGE-----YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             TTCC-----EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred             cCCc-----eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence            9998     3333322  11      01111122223554   78899999999999999886542211100        


Q ss_pred             ----------------cc-------------cceeEEEEEEcCcEEEEec------------------------------
Q 018591          257 ----------------KA-------------HEMAVLCVCLVGEFLCSGS------------------------------  277 (353)
Q Consensus       257 ----------------~~-------------~~~~v~~~~~~~~~l~~~~------------------------------  277 (353)
                                      ..             +.-.-.+++++..++++..                              
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                            00             0000134444445555431                              


Q ss_pred             ---------------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          278 ---------------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       278 ---------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                                     .+|.|+.||+.+++.....   ..+ .++..-.+...    +.+++.++.||.++.||.++++.+
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~---~~~-~~~~~g~~~ta----gglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEV---PYV-TIFNGGTLSTA----GNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEE---EES-SSCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCCeEeEc---cCC-CCccCccceEC----CCEEEEECCCCcEEEEECCCCccc
Confidence                           1488999999998854333   222 23333355556    778999999999999999999998


Q ss_pred             cccc
Q 018591          343 SDSE  346 (353)
Q Consensus       343 ~~~~  346 (353)
                      .+.+
T Consensus       510 w~~~  513 (689)
T 1yiq_A          510 WEQP  513 (689)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            7665

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.48  E-value=1.7e-11  Score=108.85  Aligned_cols=281  Identities=11%  Similarity=0.073  Sum_probs=177.1

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccCce-----------eeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-----------SVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .+..|+.++.++.|.-+|..+|+.+..+.....           ....+.+.+..++.++.|+.|..+|..+++......
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            466777788889999999999999988865421           113455678899999999999999999887321111


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceE-EEEEeCCeEEEecC------CCcEEEEEcCCceeeeeccc
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYNGLIYSGSW------DKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~  166 (353)
                      ... ..                          .....+. ......+.+++++.      ++.|+.+|..+++.+..+..
T Consensus       156 ~~~-~~--------------------------~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          156 TFE-GQ--------------------------KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             TTT-TC--------------------------CSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCc-Cc--------------------------CcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence            000 00                          0000000 11122356666654      68999999999998877643


Q ss_pred             cCcc--------------------------------eEEEEE--eCCeEEEEcCCC-------------------cEEEE
Q 018591          167 HDDA--------------------------------VNGLVA--SKGIVYSASADG-------------------KIKAW  193 (353)
Q Consensus       167 ~~~~--------------------------------v~~i~~--~~~~l~~~~~dg-------------------~i~iw  193 (353)
                      ....                                ...+++  ..+.++.++.++                   .|..+
T Consensus       209 ~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~Al  288 (677)
T 1kb0_A          209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL  288 (677)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             CCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEE
Confidence            2111                                123455  345777776654                   59999


Q ss_pred             eCCCCCcccccceeeeec--cC-------CceeeEEEEcCCC---CeEEeecCCCcEEEeeccccccceeeeeeccc---
Q 018591          194 GKELGKSHCHSLKGILEG--HK-------DVSLNSVVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWKLACETKA---  258 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~--~~-------~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---  258 (353)
                      |.++++     ..-.++.  +.       ..+ ..+....+|   ..++.++.+|.++++|..+++..+........   
T Consensus       289 D~~TG~-----~~W~~~~~~~d~wd~~~~~~p-~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          289 DPDTGK-----YKWHYQETPGDNWDYTSTQPM-ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             CTTTCC-----EEEEEESSTTCCSCCCCCSCC-EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             ECCCCC-----EEEEEecCCCcccccccCCCc-EEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence            999988     3333222  11       112 223333467   68999999999999999998654433211000   


Q ss_pred             ------------------------------cceeEEEEEEcCcEEEEecC------------------------------
Q 018591          259 ------------------------------HEMAVLCVCLVGEFLCSGSA------------------------------  278 (353)
Q Consensus       259 ------------------------------~~~~v~~~~~~~~~l~~~~~------------------------------  278 (353)
                                                    +.-...+++++..++++...                              
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                                          00012345555566665432                              


Q ss_pred             -------------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          279 -------------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       279 -------------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                                   .|.|..||+.+++......    +..++....+..+    +.+++.++.||.+++||.++++.+.+.
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~~~----g~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE----HVSPWNGGTLTTA----GNVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecC----CCCCCcCcceEeC----CCEEEEECCCCcEEEEECCCCceeeee
Confidence                         2789999999988544332    2334455556666    778888999999999999999988766


Q ss_pred             c
Q 018591          346 E  346 (353)
Q Consensus       346 ~  346 (353)
                      .
T Consensus       515 ~  515 (677)
T 1kb0_A          515 P  515 (677)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.47  E-value=4.2e-12  Score=103.21  Aligned_cols=308  Identities=15%  Similarity=0.092  Sum_probs=168.3

Q ss_pred             CCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~   82 (353)
                      +++++..+..+.....+..++ +..+..++.++.|..|| .+++....+..+...+.++..+ +..++.++.+  |..+|
T Consensus         8 ~g~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d   84 (330)
T 3hxj_A            8 DCKIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAIN   84 (330)
T ss_dssp             ----CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEEC
T ss_pred             CceEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEEC
Confidence            344444444444555666664 56667777777788888 7777766665555566667665 5566666555  77777


Q ss_pred             cccCccceeEEeecccc----ccceeeeecccceeEeecccceeee--eecCCceEEEEEeC-CeEEEecCCCcEEEEEc
Q 018591           83 VSRSSENVFRLVDTLPT----TKDYLGKFMKQSNYVQTRRHHKRLW--IEHADSISCLTVYN-GLIYSGSWDKTLKVWRV  155 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~  155 (353)
                      .................    ....+-..................+  ......+.++...+ +.+..++.++.|..+|.
T Consensus        85 ~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~  164 (330)
T 3hxj_A           85 PDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINP  164 (330)
T ss_dssp             CCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECT
T ss_pred             CCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECC
Confidence            53222111110000000    0000000000011111110011111  12223344555664 77888888899999998


Q ss_pred             CCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591          156 ADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS  234 (353)
Q Consensus       156 ~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  234 (353)
                      . ++....+......+.++.. .++.++.++  +.|..+| .+++     .......... .+.++...+++. +..++.
T Consensus       165 ~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~-----~~~~~~~~~~-~~~~~~~~~~g~-l~v~t~  233 (330)
T 3hxj_A          165 D-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT-----EKWNFYAGYW-TVTRPAISEDGT-IYVTSL  233 (330)
T ss_dssp             T-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC-----EEEEECCSSC-CCSCCEECTTSC-EEEEET
T ss_pred             C-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc-----EEEEEccCCc-ceeceEECCCCe-EEEEcC
Confidence            8 7777666655566777777 566777777  8899999 5554     2223332222 347888888875 555666


Q ss_pred             CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       235 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      ++.+..+|.... ..+..    .........+..+ +..|..++.+|.|..+|. +++.   +..+......+.++...+
T Consensus       234 ~~gl~~~~~~g~-~~~~~----~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~---~~~~~~~~~~~~~~~~d~  304 (330)
T 3hxj_A          234 DGHLYAINPDGT-EKWRF----KTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE---KWNFETGSWIIATPVIDE  304 (330)
T ss_dssp             TTEEEEECTTSC-EEEEE----ECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE---EEEEECSSCCCSCCEECT
T ss_pred             CCeEEEECCCCC-EeEEe----eCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcE---EEEEEcCCccccceEEcC
Confidence            777888875332 22221    1111111222334 567788888888999996 5553   222333345567777766


Q ss_pred             CCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +    +. |..++.+|.+++...+..+
T Consensus       305 ~----g~-l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          305 N----GT-IYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             T----CC-EEEECTTSCEEEEEC----
T ss_pred             C----CE-EEEEcCCCeEEEEeccccc
Confidence            6    54 5668889999988766543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=6.3e-11  Score=106.94  Aligned_cols=271  Identities=11%  Similarity=0.006  Sum_probs=157.9

Q ss_pred             EECCcEEEEEeCCCc---EEEEe--CC---CceeeEEe------ccCceeeEEEEEe--CCEEEEecCC-----CcEEEE
Q 018591           23 ALCGEFILSASQGKD---IIVWQ--QP---DLRMFTKF------GHGDGSVKAVVTV--GNKVFTAHQD-----SRIRVW   81 (353)
Q Consensus        23 ~~~~~~l~s~~~dg~---v~vwd--~~---~~~~~~~~------~~~~~~v~~~~~~--~~~l~s~~~d-----g~i~~w   81 (353)
                      ..+|++++....++.   -.+|.  ..   .++....+      .+|...+..+.|+  +++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            356777766654432   45554  33   33333322      2233467888888  7777766543     369999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCC------------
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDK------------  148 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg------------  148 (353)
                      |+++++....    .                             .+...+..++|+| +.|+.++.++            
T Consensus       195 dl~tg~~~~~----~-----------------------------~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          195 GVADGKPLAD----E-----------------------------LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             ETTTCCEEEE----E-----------------------------EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred             ECCCCCCCCc----c-----------------------------CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence            9998862110    0                             0111123567777 5666666554            


Q ss_pred             --cEEEEEcCCce----eeeeccccCcceEEEEEeCC--eEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCc
Q 018591          149 --TLKVWRVADLK----CLESIKAHDDAVNGLVASKG--IVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDV  215 (353)
Q Consensus       149 --~v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~--~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~  215 (353)
                        .|++|++.++.    .+.....+...+..+.|+++  .++..+.+     ..|++||+.++...   ....+..+...
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~  318 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG---PVTALIPDLKA  318 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC---CCEEEECSSSS
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc---ccEEecCCCCc
Confidence              38999987654    22232333345788888443  56655543     38999999876210   12333344433


Q ss_pred             eeeEEEEcCCCCeEEeecC----CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecC-C
Q 018591          216 SLNSVVVSDDGKWVYGGGS----DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKRE-A  289 (353)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~-~  289 (353)
                      . ... ++|+++.|+..+.    ++.|.+||+....  .........+...+..+.+. +.++++...|+..+||.+. +
T Consensus       319 ~-~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          319 Q-WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             C-EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT
T ss_pred             e-EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence            3 333 3488888877665    3459999987642  01122223333445566665 5677788889887777654 3


Q ss_pred             CcceEEeccccC-CCcCeEEEEeecCCCCCCeEEE----EccCCCeEEEEEcCCCC
Q 018591          290 FGKLCRVGAITG-HEGPVKCLQASPNAVGGGFLLY----SGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       290 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~l~----s~~~dg~i~iw~~~~~~  340 (353)
                      ++   ....+.. +.+.+..+.++|+    ++.|+    +....++|.+||+.+++
T Consensus       395 g~---~~~~l~~~~~~~v~~~~~s~d----~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          395 GK---PAGAVSLPGIGSASGLSGRPG----DRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             SC---EEEECBCSSSCEEEEEECCBT----CSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CC---ceeeccCCCCeEEEEeecCCC----CCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            33   2333333 3567899999998    66555    34456899999998765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.45  E-value=2.2e-12  Score=104.91  Aligned_cols=181  Identities=14%  Similarity=0.123  Sum_probs=114.4

Q ss_pred             EeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          136 VYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       136 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      ...+.+..++.++.|..+|.. ++.......+...+.++.. .++.++.++.++.|..+|.. ++     ..........
T Consensus       105 ~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-----~~~~~~~~~~  177 (330)
T 3hxj_A          105 IFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT-----EKWRFKTNDA  177 (330)
T ss_dssp             EETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC-----EEEEEECSSC
T ss_pred             EECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-----EeEEEecCCC
Confidence            336788889989999999987 7776666555555666666 46788889989999999998 65     3333333333


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC-cEEEEecCCCeEEEEecCCCcce
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG-EFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                       .+.++...+++...+ ++  +.+..+| .++...+..    ......+.++..++ ..|..++.++.|..+|. +++..
T Consensus       178 -~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~----~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~  247 (330)
T 3hxj_A          178 -ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF----YAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEK  247 (330)
T ss_dssp             -CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE----CCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEE
T ss_pred             -ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE----ccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEe
Confidence             336777877777544 44  7799999 555332222    22223344555553 36777777888888874 44432


Q ss_pred             EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                         ..+......+.++...++    + .|..++.+|.|..+|. +++..
T Consensus       248 ---~~~~~~~~~~~~~~~~~~----g-~l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          248 ---WRFKTGKRIESSPVIGNT----D-TIYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             ---EEEECSSCCCSCCEECTT----S-CEEEECTTCEEEEECT-TSCEE
T ss_pred             ---EEeeCCCCccccceEcCC----C-eEEEecCCCCEEEECC-CCcEE
Confidence               222323333444555554    4 5666777888888885 44433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.45  E-value=2.3e-10  Score=101.81  Aligned_cols=303  Identities=11%  Similarity=0.065  Sum_probs=170.6

Q ss_pred             CCCCceeeeeeCccCc-----------eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccC--c---eeeE-EEEEe
Q 018591            3 CKSHRSLAVLSGHVGS-----------VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHG--D---GSVK-AVVTV   65 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~-----------v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~---~~v~-~~~~~   65 (353)
                      ..+|+.+..+..+...           -..+++.+..++.++.|+.|..+|..+|+.+..+...  .   ..+. +-...
T Consensus        87 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~  166 (689)
T 1yiq_A           87 ARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV  166 (689)
T ss_dssp             TTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE
T ss_pred             CCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE
Confidence            4577777776644321           1234556778889999999999999999999877542  1   1111 11223


Q ss_pred             CCEEEEec------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee---eecCCceEEEEE
Q 018591           66 GNKVFTAH------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW---IEHADSISCLTV  136 (353)
Q Consensus        66 ~~~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~  136 (353)
                      ++.++.++      .+|.|..||.++++..-..  ...+......  +................|   .++......+++
T Consensus       167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~--~~~~~~p~~~--~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~  242 (689)
T 1yiq_A          167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF--YTVPGDPKLP--PEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY  242 (689)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE--ESSCCCTTSC--CCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE
T ss_pred             CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe--cccCCCcccc--cccccccccccccCCceeeecCCCCccccceeE
Confidence            55666554      3789999999988732111  1111000000  000000000000000000   011222235677


Q ss_pred             eC--CeEEEecCCCc-------------------EEEEEcCCceeeeeccc--cC-------cceE--EEEEeCC---eE
Q 018591          137 YN--GLIYSGSWDKT-------------------LKVWRVADLKCLESIKA--HD-------DAVN--GLVASKG---IV  181 (353)
Q Consensus       137 ~~--~~l~~~~~dg~-------------------v~iwd~~~~~~~~~~~~--~~-------~~v~--~i~~~~~---~l  181 (353)
                      ++  ++++.++.++.                   |..+|.++++.+..++.  |.       .+..  .+.+.+.   .+
T Consensus       243 d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v  322 (689)
T 1yiq_A          243 DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVL  322 (689)
T ss_dssp             ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEE
T ss_pred             cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEE
Confidence            76  78888877763                   99999999999887754  21       1111  1222222   68


Q ss_pred             EEEcCCCcEEEEeCCCCCcccccce------ee-----------------eecc----------CCceeeEEEEcCCCCe
Q 018591          182 YSASADGKIKAWGKELGKSHCHSLK------GI-----------------LEGH----------KDVSLNSVVVSDDGKW  228 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~~~~~~~~~~------~~-----------------~~~~----------~~~~v~~~~~~~~~~~  228 (353)
                      +.++.+|.++++|.++++.......      ..                 +...          .......++++|+..+
T Consensus       323 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~  402 (689)
T 1yiq_A          323 MQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGL  402 (689)
T ss_dssp             EECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred             EEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCE
Confidence            8899999999999999883210000      00                 0000          0001124788888777


Q ss_pred             EEeecC---------------------------------------------CCcEEEeeccccccceeeeeeccccceeE
Q 018591          229 VYGGGS---------------------------------------------DGFVMGWEGNVEIVRWKLACETKAHEMAV  263 (353)
Q Consensus       229 l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  263 (353)
                      +++...                                             +|.|..||+.+++..++........   -
T Consensus       403 ~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~---~  479 (689)
T 1yiq_A          403 VYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN---G  479 (689)
T ss_dssp             EEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC---C
T ss_pred             EEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc---C
Confidence            776421                                             3779999999987666544322111   1


Q ss_pred             EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          264 LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       264 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      -.+...+.+++.|+.||.++.||.++++.+.....  ++.....-+.|..+
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~--~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA--ASGVMAAPVTYSVD  528 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEET
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCccceeeeC--CCCcccCceEEEEC
Confidence            24455688999999999999999999985433322  22222234667777

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=9e-12  Score=101.65  Aligned_cols=171  Identities=11%  Similarity=-0.074  Sum_probs=122.1

Q ss_pred             ceEEEEEeC--CeEEEecCCCcEEEEEcCCce-----------eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCC
Q 018591          130 SISCLTVYN--GLIYSGSWDKTLKVWRVADLK-----------CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~  196 (353)
                      .++.+++++  +++++|+.++ +.+|++.+.+           ..... .+.. |+.++|.++.|+++ .++.|++||++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence            688899988  8888888875 6669876433           11122 3456 99999955577777 88999999998


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG  276 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  276 (353)
                      +..     .......+...+ ..+.+.+.  .+++++.||.+.+||+..+..    ..    +...+.|++|+.+-++.|
T Consensus       115 sl~-----~~~~~~~~~~~v-~~i~~~~p--~~av~~~dG~L~v~dl~~~~~----~~----~~~~Vs~v~WSpkG~~vg  178 (388)
T 1xip_A          115 ELS-----EFRTVTSFEKPV-FQLKNVNN--TLVILNSVNDLSALDLRTKST----KQ----LAQNVTSFDVTNSQLAVL  178 (388)
T ss_dssp             STT-----CEEEEEECSSCE-EEEEECSS--EEEEEETTSEEEEEETTTCCE----EE----EEESEEEEEECSSEEEEE
T ss_pred             hhh-----ccCccceeecce-eeEEecCC--CEEEEECCCCEEEEEccCCcc----cc----ccCCceEEEEcCCceEEE
Confidence            775     222334444443 66666654  388889999999999987632    11    345788888885558899


Q ss_pred             cCCCeEEEEecCCCcc--eEEec---ccc---CCCcCeEEEEeecCCCCCCeEEEE
Q 018591          277 SADKSIGIWKREAFGK--LCRVG---AIT---GHEGPVKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       277 ~~dg~i~iw~~~~~~~--~~~~~---~~~---~h~~~v~~~~~~~~~~~~~~~l~s  324 (353)
                      ..||++++|+....+.  ...+.   .+.   +|...|.++.|.++    +.+|++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~----~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP----QDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS----SEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC----CeEEEE
Confidence            9999999998876552  11120   112   47788999999998    888887

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=4.4e-10  Score=93.74  Aligned_cols=231  Identities=12%  Similarity=0.068  Sum_probs=145.3

Q ss_pred             eeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591           58 SVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT  135 (353)
Q Consensus        58 ~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  135 (353)
                      ....|+++  ++.+++...++.|+.||.+++.....  .                               ....... ++
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~--~-------------------------------~~~~~~~-ia  177 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV--H-------------------------------PGFKGGK-PA  177 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE--E-------------------------------ETCCBCB-CE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe--e-------------------------------ccCCCCc-ee
Confidence            46678887  55555556678999999876642111  0                               1111222 77


Q ss_pred             EeC--CeEEEecCCC--cEEEEEcCCceeeeec----cccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccc
Q 018591          136 VYN--GLIYSGSWDK--TLKVWRVADLKCLESI----KAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSL  205 (353)
Q Consensus       136 ~~~--~~l~~~~~dg--~v~iwd~~~~~~~~~~----~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~  205 (353)
                      +++  +.|+++..++  .|.+++...+.....+    ......+.++++.  ++.|+.+..++.|+.||..++.     .
T Consensus       178 ~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-----~  252 (409)
T 3hrp_A          178 VTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-----V  252 (409)
T ss_dssp             ECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-----E
T ss_pred             EecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-----E
Confidence            777  6777777765  7999987655433333    2144567888884  4577777778999999998765     1


Q ss_pred             eee----eeccC-CceeeEEEEcCC-CCeEEeecCCCcEEEeeccccccceeeeeec--cc-----------cceeEEEE
Q 018591          206 KGI----LEGHK-DVSLNSVVVSDD-GKWVYGGGSDGFVMGWEGNVEIVRWKLACET--KA-----------HEMAVLCV  266 (353)
Q Consensus       206 ~~~----~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----------~~~~v~~~  266 (353)
                      ...    ..+.. ..+...++|+|+ +.++++-..++.|+.|+......  ......  .+           ....-.++
T Consensus       253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~gia~  330 (409)
T 3hrp_A          253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNGMTV  330 (409)
T ss_dssp             EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred             EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence            111    11111 112128999995 66666667788999998765311  111100  00           11222444


Q ss_pred             EEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCC---------------CcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591          267 CLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGH---------------EGPVKCLQASPNAVGGGFLLYSGSLDKS  330 (353)
Q Consensus       267 ~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~~~~l~s~~~dg~  330 (353)
                      .++|+++++-. .++.|+.|++.++..    ..+.++               -.....++++|+    +.++++-..++.
T Consensus       331 d~dG~lyvad~~~~~~I~~~~~~~G~v----~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~----g~lyVad~~n~~  402 (409)
T 3hrp_A          331 DEDGNFYIVDGFKGYCLRKLDILDGYV----STVAGQVDVASQIDGTPLEATFNYPYDICYDGE----GGYWIAEAWGKA  402 (409)
T ss_dssp             CTTCCEEEEETTTTCEEEEEETTTTEE----EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS----SEEEEEESTTCE
T ss_pred             eCCCCEEEEeCCCCCEEEEEECCCCEE----EEEeCCCCCCCcCCCChhceEeCCceEEEEcCC----CCEEEEECCCCe
Confidence            55688888877 899999999776542    222222               245889999999    999999999999


Q ss_pred             EEEEEcC
Q 018591          331 LRVWWVS  337 (353)
Q Consensus       331 i~iw~~~  337 (353)
                      |+.++++
T Consensus       403 Ir~i~~e  409 (409)
T 3hrp_A          403 IRKYAVE  409 (409)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9988763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=1.2e-09  Score=87.34  Aligned_cols=220  Identities=10%  Similarity=0.046  Sum_probs=132.1

Q ss_pred             eeEEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591           58 SVKAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL  134 (353)
Q Consensus        58 ~v~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  134 (353)
                      .-.+..|+   +..+++...++.|..||.+++...   ..                               .....+.++
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~-------------------------------~~~~~~~~i   59 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RV-------------------------------TMDAPVSSV   59 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EE-------------------------------ECSSCEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EE-------------------------------eCCCceEEE
Confidence            34456666   345666667889999998876511   00                               234568889


Q ss_pred             EEeC-CeEEEecCCCcEEEEEcCCceeeeeccc----cCcceEEEEE-eCCeEEEEcC----------CCcEEEEeCCCC
Q 018591          135 TVYN-GLIYSGSWDKTLKVWRVADLKCLESIKA----HDDAVNGLVA-SKGIVYSASA----------DGKIKAWGKELG  198 (353)
Q Consensus       135 ~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~-~~~~l~~~~~----------dg~i~iwd~~~~  198 (353)
                      ++++ ..++++. ++.|.+||..+++.......    ....++.+++ +++.++.++.          ...-.+|.+...
T Consensus        60 ~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~  138 (297)
T 3g4e_A           60 ALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD  138 (297)
T ss_dssp             EEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred             EECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence            9998 4466665 56799999987765332221    1245788888 4444554432          122344444322


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeecc--ccccc-eeeeeeccccceeEEEEEE--cCcE
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGN--VEIVR-WKLACETKAHEMAVLCVCL--VGEF  272 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~  272 (353)
                      ..    ... .......+ +.++|+|+++.++ +.+.++.|.+|++.  ++... ......+.........+..  +|++
T Consensus       139 g~----~~~-~~~~~~~p-ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l  212 (297)
T 3g4e_A          139 HH----VKK-YFDQVDIS-NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL  212 (297)
T ss_dssp             SC----EEE-EEEEESBE-EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred             CC----EEE-Eeeccccc-cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE
Confidence            20    111 22222334 8899999998664 55667889999874  33211 1122222222333444444  5877


Q ss_pred             EEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cCCCCCCeEEEEc
Q 018591          273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PNAVGGGFLLYSG  325 (353)
Q Consensus       273 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~l~s~  325 (353)
                      .++...++.|..||..+++   .+..+..+...+++++|. |+    ++.|+.+
T Consensus       213 wva~~~~~~v~~~d~~tG~---~~~~i~~p~~~~t~~~f~g~d----~~~L~vt  259 (297)
T 3g4e_A          213 WVACYNGGRVIRLDPVTGK---RLQTVKLPVDKTTSCCFGGKN----YSEMYVT  259 (297)
T ss_dssp             EEEEETTTEEEEECTTTCC---EEEEEECSSSBEEEEEEESGG----GCEEEEE
T ss_pred             EEEEcCCCEEEEEcCCCce---EEEEEECCCCCceEEEEeCCC----CCEEEEE
Confidence            7777778899999998877   444555566779999998 77    5544433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.41  E-value=2.1e-09  Score=89.68  Aligned_cols=232  Identities=11%  Similarity=0.059  Sum_probs=143.9

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC--cEEEEEcccCccce
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS--RIRVWKVSRSSENV   90 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~~w~~~~~~~~~   90 (353)
                      .....|+++  ++++++...++.|++||..++............ . ++++  ++.|+++..++  .|.+++......  
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~--  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA--  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence            467889996  777777777899999999888776655443322 3 6776  77888888766  677777765431  


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee----c
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES----I  164 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~----~  164 (353)
                      ...+.....                          .....+.++++++  ..|+++..++.|+.||..++.....    .
T Consensus       207 ~~~~g~~~~--------------------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~  260 (409)
T 3hrp_A          207 PTRIGQLGS--------------------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL  260 (409)
T ss_dssp             EEEEEECCT--------------------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC
T ss_pred             eEEeeeccc--------------------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc
Confidence            111111000                          1234556788887  6677777789999999877653322    2


Q ss_pred             cccCcce--EEEEEeC--C-eEEEEcCCCcEEEEeCCCCCcccccceeeeecc---------------CCceeeEEEEcC
Q 018591          165 KAHDDAV--NGLVASK--G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGH---------------KDVSLNSVVVSD  224 (353)
Q Consensus       165 ~~~~~~v--~~i~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~  224 (353)
                      .++...-  ..+++++  + ++++-..++.|+.|+.....       ..+.++               ...+ ..++++|
T Consensus       261 ~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-------~~~~g~~~~~g~~dg~~~~~~~~~P-~gia~d~  332 (409)
T 3hrp_A          261 SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-------EWFCGSATQKTVQDGLREEALFAQP-NGMTVDE  332 (409)
T ss_dssp             CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------EEEEECTTCCSCBCEEGGGCBCSSE-EEEEECT
T ss_pred             cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-------EEEEeCCCCCCcCCCcccccEeCCC-eEEEEeC
Confidence            2222222  3889854  4 55555678889999876431       111111               1234 8999999


Q ss_pred             CCCeEEeec-CCCcEEEeeccccccceeeeee--ccc---------cceeEE--EEEEcCcEEEEecCCCeEEEEec
Q 018591          225 DGKWVYGGG-SDGFVMGWEGNVEIVRWKLACE--TKA---------HEMAVL--CVCLVGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       225 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~---------~~~~v~--~~~~~~~~l~~~~~dg~i~iw~~  287 (353)
                      +|+++++-. .++.|+.|++..+... .....  ..+         .-....  ++.+++.++++-..++.|+.+++
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999888877 8899999997665211 11110  000         011233  44445677777777888887765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.40  E-value=1.5e-10  Score=104.51  Aligned_cols=241  Identities=10%  Similarity=-0.017  Sum_probs=141.6

Q ss_pred             CccCceEEEEEC--CcEEEEEeCC-----CcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCc--------
Q 018591           14 GHVGSVSSLALC--GEFILSASQG-----KDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSR--------   77 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~--------   77 (353)
                      +|...+..++|+  |++||.++.+     ..|++||+.+++.+... .+...+..++|+ .+.|+.++.++.        
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCccccccccc
Confidence            344578888996  8888877654     36999999999876542 122233567786 456777665543        


Q ss_pred             ------EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCC--
Q 018591           78 ------IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWD--  147 (353)
Q Consensus        78 ------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d--  147 (353)
                            |++|++.++..... .+...+                           .+...+..+.|++  ++|+..+.+  
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~-lv~~~~---------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQ-PVFATP---------------------------ELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCE-EEECCT---------------------------TCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             CCCCCEEEEEECCCCchhCE-EEeccC---------------------------CCCeEEEEEEECCCCCEEEEEEEccC
Confidence                  77888765542111 111100                           2333578889998  567666644  


Q ss_pred             ---CcEEEEEcCCc--eeeeeccccCcceEEEEE-eCCeEEEEcC----CCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591          148 ---KTLKVWRVADL--KCLESIKAHDDAVNGLVA-SKGIVYSASA----DGKIKAWGKELGKSHCHSLKGILEGHKDVSL  217 (353)
Q Consensus       148 ---g~v~iwd~~~~--~~~~~~~~~~~~v~~i~~-~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (353)
                         ..|++||+.++  ++...+..+...+....+ .++.|+..+.    ++.|.+||+.++.   ......+..+ ...+
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~~l~~~~-~~~l  366 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST---PRFDTVVPES-KDNL  366 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS---CEEEEEECCC-SSEE
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc---cccEEEecCC-CCeE
Confidence               38999999876  314444444444444444 4556665554    3459999987641   0123333333 3344


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEE--cCcEEE----EecCCCeEEEEecCCC
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCL--VGEFLC----SGSADKSIGIWKREAF  290 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~----~~~~dg~i~iw~~~~~  290 (353)
                      ..+.++ ++.++++...|+..++|.+....   .....+.. ....+..+++  +++.++    +....++|++||+.++
T Consensus       367 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g---~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          367 ESVGIA-GNRLFASYIHDAKSQVLAFDLDG---KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEEEE-BTEEEEEEEETTEEEEEEEETTS---CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEEE-CCEEEEEEEECCEEEEEEEeCCC---CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            677777 56677888888887777654211   11222222 2445555554  565554    2234588999999876


Q ss_pred             c
Q 018591          291 G  291 (353)
Q Consensus       291 ~  291 (353)
                      +
T Consensus       443 ~  443 (741)
T 1yr2_A          443 K  443 (741)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.40  E-value=3.3e-10  Score=92.13  Aligned_cols=267  Identities=15%  Similarity=0.113  Sum_probs=160.6

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccCc-------eeeEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHGD-------GSVKAVV   63 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~-------~~v~~~~   63 (353)
                      ..+++.+.++.....+ . ++++  |++++.+.          .++.|.+||..+++.+..+....       ..-..+.
T Consensus        66 ~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a  143 (386)
T 3sjl_D           66 GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS  143 (386)
T ss_dssp             TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred             CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence            4567777777765555 3 8886  77776665          36789999999999998875321       1234466


Q ss_pred             Ee--CCEEEEecC--CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE-eC
Q 018591           64 TV--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV-YN  138 (353)
Q Consensus        64 ~~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~  138 (353)
                      ++  +++++.+..  ++.|.++|+.+.+     .+..++..                         +    ...+.. ..
T Consensus       144 ~spDGk~lyVan~~~~~~VsVID~~t~~-----vv~tI~v~-------------------------g----~~~~~P~g~  189 (386)
T 3sjl_D          144 LTPDGKTLLFYQFSPAPAVGVVDLEGKA-----FKRMLDVP-------------------------D----CYHIFPTAP  189 (386)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECC-------------------------S----EEEEEEEET
T ss_pred             EcCCCCEEEEEEcCCCCeEEEEECCCCc-----EEEEEECC-------------------------C----cceeecCCC
Confidence            65  888887753  6899999999886     33333211                         0    011111 11


Q ss_pred             CeEEEecCCCcEEEEEcCC-ceeeeecccc----CcceE-EEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591          139 GLIYSGSWDKTLKVWRVAD-LKCLESIKAH----DDAVN-GLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE  210 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~----~~~v~-~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  210 (353)
                      ..+++.+.||.+.+.++.+ ++.......+    ..++. ...|  .++.++..+.+|.+.+.|..............+.
T Consensus       190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~  269 (386)
T 3sjl_D          190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT  269 (386)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred             ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence            5677888899999999876 5542211111    12221 2344  3555555777899999999766421111111000


Q ss_pred             ------c-cCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeecc-ccceeEEEEEEcCc-
Q 018591          211 ------G-HKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVCLVGE-  271 (353)
Q Consensus       211 ------~-~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-  271 (353)
                            + .... ...++++|+++.++....          .+.|.++|+.+.+    ....+. ++...-..++++++ 
T Consensus       270 ~~~~~~g~~p~g-~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----v~~~i~vg~~~~~lavs~D~~~  344 (386)
T 3sjl_D          270 EAERADGWRPGG-WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----RLAKFEMGHEIDSINVSQDEKP  344 (386)
T ss_dssp             HHHHHTTEEECS-SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEEEEEECEEEECSSSSC
T ss_pred             cccccccccCCC-cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe----EEEEEECCCCcceEEECCCCCe
Confidence                  0 0111 245788999988887642          2579999999884    333322 23334566677775 


Q ss_pred             EEEE-ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          272 FLCS-GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       272 ~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      +|++ ...++.|.++|..+++....+.. .+|   -+.|.+++|
T Consensus       345 ~ly~tn~~~~~VsViD~~t~k~~~~i~~-~~~---p~~l~~s~d  384 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAESGEELRSVNQ-LGH---GPQVITTAD  384 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECC-CCS---SCCEEEECC
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEecC-CCC---CceeEECCc
Confidence            5555 45689999999999884433322 223   344555554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.39  E-value=6.3e-09  Score=85.57  Aligned_cols=245  Identities=12%  Similarity=0.011  Sum_probs=150.7

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccC-------ceeeEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHG-------DGSVKAVV   63 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~   63 (353)
                      ..+++.+.++.....+  .++++  |++++.+.          .++.|.+||..+++.+..+...       ...-..+.
T Consensus        54 ~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~  131 (373)
T 2mad_H           54 AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA  131 (373)
T ss_pred             CCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceE
Confidence            4566777777755555  78885  88888875          3678999999998888776432       11233566


Q ss_pred             Ee--CCEEEEecC--CCcEEEEEcccCccceeEEeec-cccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591           64 TV--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDT-LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN  138 (353)
Q Consensus        64 ~~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  138 (353)
                      ++  +++|+.+..  ++.|.++| .+++     .+.. ++.                            ...+......+
T Consensus       132 ~spDG~~l~v~n~~~~~~v~viD-~t~~-----~~~~~i~~----------------------------~~~~~~~~~~~  177 (373)
T 2mad_H          132 NTPNNADLLFFQFAAGPAVGLVV-QGGS-----SDDQLLSS----------------------------PTCYHIHPGAP  177 (373)
T ss_pred             ECCCCCEEEEEecCCCCeEEEEE-CCCC-----EEeEEcCC----------------------------CceEEEEeCCC
Confidence            65  888888764  47899999 8775     2222 221                            11111111122


Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeecc-----ccCcce-EEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIK-----AHDDAV-NGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE  210 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v-~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  210 (353)
                      ..+++.+.||.+.++|. +++......     ....++ ....+  .++.++..+.++.+.+.|+......   ....+.
T Consensus       178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~---v~~~~~  253 (373)
T 2mad_H          178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT---NKAPID  253 (373)
T ss_pred             ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce---Eeeeee
Confidence            56677778999999999 777663321     111221 12223  2334444447789999998755311   111111


Q ss_pred             c----------cCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeecc-ccceeEEEEEEc
Q 018591          211 G----------HKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETK-AHEMAVLCVCLV  269 (353)
Q Consensus       211 ~----------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~  269 (353)
                      .          .... ...++++|+++.+++...          ++.|.++|..+.+    ....+. +....-..++++
T Consensus       254 ~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----vv~~i~~g~~p~~i~~s~D  328 (373)
T 2mad_H          254 ALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----TSSQISLGHDVDAISVAQD  328 (373)
T ss_pred             ecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE----EEEEEECCCCcCeEEECCC
Confidence            0          0111 144789999988877643          3579999998873    323322 233455667777


Q ss_pred             Cc-EEEEec-CCCeEEEEecCCCcc
Q 018591          270 GE-FLCSGS-ADKSIGIWKREAFGK  292 (353)
Q Consensus       270 ~~-~l~~~~-~dg~i~iw~~~~~~~  292 (353)
                      |+ +++++. .++.|.++|..+++.
T Consensus       329 g~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          329 GGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CCeEEEEEcCCCCeEEEEECCCCCE
Confidence            88 777776 589999999999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.37  E-value=1.2e-08  Score=81.46  Aligned_cols=232  Identities=12%  Similarity=0.131  Sum_probs=146.8

Q ss_pred             CceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE
Q 018591           55 GDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS  132 (353)
Q Consensus        55 ~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  132 (353)
                      ......+++++  +...++...++.|.+|+.. +...   .. .++                           .....+.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---~~-~~~---------------------------~~~~~~~   65 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---EF-EVP---------------------------TPDAKVM   65 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---EE-ECS---------------------------STTCCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---EE-ECC---------------------------CCCCcce
Confidence            34567788887  5566666567899999977 4311   10 010                           2235677


Q ss_pred             EEEEeC--CeEEEecCCCcEEEEEcCCceeee-eccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          133 CLTVYN--GLIYSGSWDKTLKVWRVADLKCLE-SIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       133 ~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      ++++.+  ..+++...++.|..+|.. ++... .+......+.++++ +++ .+++...++.|..+|.. ++     ...
T Consensus        66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-----~~~  138 (300)
T 2qc5_A           66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-----IYE  138 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----EEE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-----EEE
Confidence            888887  444444557889999987 54432 22223466888888 344 44455557899999987 44     221


Q ss_pred             e-eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEE
Q 018591          208 I-LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGI  284 (353)
Q Consensus       208 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  284 (353)
                      . .......+ ..+++.+++++.++...++.|..++. .+...   ..........+..+..  ++++.++....+.|.+
T Consensus       139 ~~~~~~~~~~-~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          139 YDLPNKGSYP-AFITLGSDNALWFTENQNNSIGRITN-TGKLE---EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             EECSSTTCCE-EEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             ccCCCCCCCc-eeEEECCCCCEEEEecCCCeEEEECC-CCcEE---EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            1 22223334 89999999997777777888999998 33211   1112222334555555  4777776667788999


Q ss_pred             EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      |+. +++.. .. .+..+...+.+++++++    +++.++...++.|..|+..
T Consensus       214 ~~~-~g~~~-~~-~~~~~~~~~~~i~~d~~----g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          214 ITT-TGEIS-EY-DIPTPNARPHAITAGKN----SEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ECT-TCCEE-EE-ECSSTTCCEEEEEECST----TCEEEEETTTTEEEEECTT
T ss_pred             EcC-CCcEE-EE-ECCCCCCCceEEEECCC----CCEEEeccCCCeEEEECCC
Confidence            998 33321 11 22334567899999998    8877777777899999873

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=7.9e-09  Score=82.49  Aligned_cols=220  Identities=14%  Similarity=0.141  Sum_probs=129.5

Q ss_pred             eeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccC
Q 018591           12 LSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        12 l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      +..+..---+..|+   +.++++...++.|..||..+++.. .+. ....+.+++++  ++ ++.+. ++.|.+||.+++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCC-EEEEE-CCeEEEEECCCC
Confidence            34444455677775   567777778899999999877653 333 24578889987  55 44444 567999998766


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecC----------CCcEEEEEc
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSW----------DKTLKVWRV  155 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~----------dg~v~iwd~  155 (353)
                      ...   .+......                         .....++.+.+++ ..+..++.          ...-.+|.+
T Consensus        84 ~~~---~~~~~~~~-------------------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~  135 (297)
T 3g4e_A           84 SAV---VLATVDND-------------------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSL  135 (297)
T ss_dssp             EEE---EEEECCTT-------------------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEE
T ss_pred             cEE---EEEecCCC-------------------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEE
Confidence            421   11111000                         1123467888888 44554431          122344444


Q ss_pred             CC-ceeeeeccccCcceEEEEEeC-C--eEEEEcCCCcEEEEeCC--CCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591          156 AD-LKCLESIKAHDDAVNGLVASK-G--IVYSASADGKIKAWGKE--LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       156 ~~-~~~~~~~~~~~~~v~~i~~~~-~--~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  229 (353)
                      .. ++... +..+....+.++|++ +  ++++.+.++.|..||+.  ++..........+......+ ..++++++|++.
T Consensus       136 d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p-~g~~~d~~G~lw  213 (297)
T 3g4e_A          136 FPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIP-DGMCIDAEGKLW  213 (297)
T ss_dssp             CTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEE-EEEEEBTTSCEE
T ss_pred             ECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCC-CeeEECCCCCEE
Confidence            32 33322 223344567899943 3  44566778899999873  44311111112222223344 889999999888


Q ss_pred             EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc
Q 018591          230 YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV  269 (353)
Q Consensus       230 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (353)
                      ++....+.|..||..++    +....+..+...+.++++.
T Consensus       214 va~~~~~~v~~~d~~tG----~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          214 VACYNGGRVIRLDPVTG----KRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEETTTEEEEECTTTC----CEEEEEECSSSBEEEEEEE
T ss_pred             EEEcCCCEEEEEcCCCc----eEEEEEECCCCCceEEEEe
Confidence            77777888999999876    3333344444456666664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.31  E-value=4.4e-09  Score=84.33  Aligned_cols=228  Identities=9%  Similarity=0.024  Sum_probs=132.0

Q ss_pred             eEEeccCceeeEEEEEe--CC-EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           49 FTKFGHGDGSVKAVVTV--GN-KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        49 ~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      +..+...........|+  ++ .+++...++.|..|+.. +..                                 ..+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~---------------------------------~~~~   82 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV---------------------------------DVLL   82 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE---------------------------------EEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE---------------------------------EEEe
Confidence            33343344455677776  55 56777788899999873 331                                 1111


Q ss_pred             ecCCceEEEEEeC-CeEEEec-CCCcEEEEEcCCceeeeeccc----cCcceEEEEE-eCCeEEE-----EcC-------
Q 018591          126 EHADSISCLTVYN-GLIYSGS-WDKTLKVWRVADLKCLESIKA----HDDAVNGLVA-SKGIVYS-----ASA-------  186 (353)
Q Consensus       126 ~~~~~i~~~~~~~-~~l~~~~-~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~-~~~~l~~-----~~~-------  186 (353)
                      .+...+..+.+++ ..++++. .++.|..|+.. ++.......    ....+..+++ +++.++.     +..       
T Consensus        83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~  161 (305)
T 3dr2_A           83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP  161 (305)
T ss_dssp             ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred             CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence            3445678899988 4455554 45789999975 543222111    1234667888 4444444     332       


Q ss_pred             ------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC------CcEEEeeccccccce-eee
Q 018591          187 ------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD------GFVMGWEGNVEIVRW-KLA  253 (353)
Q Consensus       187 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~  253 (353)
                            .+.|..+|..+++     .....  ....+ ..++|+|+++.|+.+...      +.|.+|++....... ...
T Consensus       162 ~~~~~~~~~v~~~d~~~g~-----~~~~~--~~~~p-~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~  233 (305)
T 3dr2_A          162 ADPELAHHSVYRLPPDGSP-----LQRMA--DLDHP-NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF  233 (305)
T ss_dssp             CCCSSSCEEEEEECSSSCC-----CEEEE--EESSE-EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE
T ss_pred             cccccCCCeEEEEcCCCCc-----EEEEe--cCCCC-cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE
Confidence                  2567888876665     22222  22334 789999999987776654      689999987542100 111


Q ss_pred             eeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCe
Q 018591          254 CETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKS  330 (353)
Q Consensus       254 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~  330 (353)
                      .........-.++..+|++ .++..+| |.+|+.. ++   .+..+..+. .+.+++|+|+    ++.|..++.++.
T Consensus       234 ~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~-g~---~~~~~~~~~-~~~~~~f~~d----~~~L~it~~~~l  299 (305)
T 3dr2_A          234 ASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD-GQ---LLGHIPTPG-TASNCTFDQA----QQRLFITGGPCL  299 (305)
T ss_dssp             ECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT-SC---EEEEEECSS-CCCEEEECTT----SCEEEEEETTEE
T ss_pred             EECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC-CC---EEEEEECCC-ceeEEEEeCC----CCEEEEEcCCeE
Confidence            1111111112344555774 4444444 9999984 44   233333333 5889999987    777777776653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=107.63  Aligned_cols=189  Identities=14%  Similarity=0.139  Sum_probs=103.7

Q ss_pred             EECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEE-e-CCEEEEecCCCcEEEEEcccCccceeEEeeccccc
Q 018591           23 ALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT-V-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTT  100 (353)
Q Consensus        23 ~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~-~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~  100 (353)
                      +.++..+++++.||.|+.||..+|+.+..+..  +.+.+..+ . +..+++++.||.|+.||.++++...     ..+..
T Consensus         6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-----~~~~~   78 (369)
T 2hz6_A            6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-----KLPFT   78 (369)
T ss_dssp             --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-----ECSCC
T ss_pred             eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-----eeecc
Confidence            44688999999999999999999999988876  33433322 2 5577778899999999998775211     00000


Q ss_pred             cceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCe
Q 018591          101 KDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI  180 (353)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~  180 (353)
                      ...                   .  ....++.   ...+.+++++.|+.|+.||..+++.+..+..+.. + ..+..++.
T Consensus        79 ~~~-------------------~--~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~-~~~p~~~~  132 (369)
T 2hz6_A           79 IPE-------------------L--VQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-D-SLSPSTSL  132 (369)
T ss_dssp             HHH-------------------H--HTTCSCC--------CCCCEEEEEEEEECCC------------------------
T ss_pred             Ccc-------------------c--cccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-c-cccccCCE
Confidence            000                   0  0011110   0225677888899999999999999888765432 1 11114568


Q ss_pred             EEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC---CeEEeecCCCcEEEeeccccccceee
Q 018591          181 VYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG---KWVYGGGSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       181 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~  252 (353)
                      +++++.|+.|+.||.++++     ....+....   ....++.++.   ..+++++.+|.+..||..+++..++.
T Consensus       133 v~~~~~dg~v~a~d~~tG~-----~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          133 LYLGRTEYTITMYDTKTRE-----LRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             EEEEEEEEEEECCCSSSSS-----CCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             EEEEecCCEEEEEECCCCC-----EEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            8899999999999999887     222222111   0222333332   46777889999999999988655543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.31  E-value=4.4e-13  Score=110.42  Aligned_cols=190  Identities=10%  Similarity=-0.019  Sum_probs=104.8

Q ss_pred             eCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCC
Q 018591          137 YNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD  214 (353)
Q Consensus       137 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  214 (353)
                      ..+.+++++.||.|+.||..+++.+.+++.  ..+.+..+ .++ .+++++.||.|+.||..+++     ....+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-----~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-----GLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-----CSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-----eeeeeeccCc
Confidence            347899999999999999999999988765  34433333 444 67777899999999998876     2222222211


Q ss_pred             ceee-EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce
Q 018591          215 VSLN-SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       215 ~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                      ..+. +..+. .+..+++++.++.++.||..+++..+....    +.  ....++++..+++++.|+.|+.||.++++..
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----AF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----CC--cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence            1100 11111 345678888899999999999865554322    11  1233457888999999999999999998743


Q ss_pred             EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          294 CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ....   .+.  .....+.++... ...+++++.||.|..||..+++.+.+..
T Consensus       154 W~~~---~~~--~~~~~~~~~~~~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          154 WNAT---YFD--YAASLPEDDVDY-KMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CEEE---EEE--ECCBCCCCCTTC-CCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EeEe---ccc--ccCccccCCccc-cceEEEECCCCEEEEEECCCCcEEEEec
Confidence            3221   111  122223332000 1467778899999999999988766543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=1.4e-08  Score=82.22  Aligned_cols=217  Identities=12%  Similarity=0.038  Sum_probs=126.9

Q ss_pred             EEEEEe---CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591           60 KAVVTV---GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV  136 (353)
Q Consensus        60 ~~~~~~---~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  136 (353)
                      ....|+   +..+++...++.|..||.+++...   ..                               .....+.++.+
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~-------------------------------~~~~~v~~i~~   97 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKT---VH-------------------------------ALPFMGSALAK   97 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---EE-------------------------------ECSSCEEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---EE-------------------------------ECCCcceEEEE
Confidence            445666   335566667789999998765411   00                               12346788888


Q ss_pred             eC-CeEEEecCCCcEEEEEcCCceeeeeccc----cCcceEEEEE-eCCeEEEEcC-------CCcEEEEeCCCCCcccc
Q 018591          137 YN-GLIYSGSWDKTLKVWRVADLKCLESIKA----HDDAVNGLVA-SKGIVYSASA-------DGKIKAWGKELGKSHCH  203 (353)
Q Consensus       137 ~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~-~~~~l~~~~~-------dg~i~iwd~~~~~~~~~  203 (353)
                      .+ +.++.++.+ .|.+||..+++.......    ....+.++.+ +++.++.++.       .+.|..++  +++    
T Consensus        98 ~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~----  170 (326)
T 2ghs_A           98 ISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK----  170 (326)
T ss_dssp             EETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE----
T ss_pred             eCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc----
Confidence            88 555556554 499999887765332211    1245788888 4444444443       24555555  333    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeecc--cc-ccce-eeeeeccccceeEEEEEE--cCcEEEEe
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGN--VE-IVRW-KLACETKAHEMAVLCVCL--VGEFLCSG  276 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~-~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~  276 (353)
                       ... +......+ ..++|+|+++.++. .+.++.|.+|++.  ++ .... .....+.........+..  +|++.++.
T Consensus       171 -~~~-~~~~~~~~-~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          171 -VTK-LFADISIP-NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             -EEE-EEEEESSE-EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             -EEE-eeCCCccc-CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence             221 22222233 78999999987654 4567899999986  33 2111 111222222233344555  47776666


Q ss_pred             cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cCCCCCCeEE-EEccCC
Q 018591          277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PNAVGGGFLL-YSGSLD  328 (353)
Q Consensus       277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~l-~s~~~d  328 (353)
                      ..++.|..||. +++   .+..+..+...+++++|+ |+    +..| ++...+
T Consensus       248 ~~~~~v~~~d~-~g~---~~~~i~~~~~~~~~~af~g~d----~~~L~vt~~~~  293 (326)
T 2ghs_A          248 WGEGAVDRYDT-DGN---HIARYEVPGKQTTCPAFIGPD----ASRLLVTSARE  293 (326)
T ss_dssp             ETTTEEEEECT-TCC---EEEEEECSCSBEEEEEEESTT----SCEEEEEEBCT
T ss_pred             eCCCEEEEECC-CCC---EEEEEECCCCCcEEEEEecCC----CCEEEEEecCC
Confidence            66788999998 445   333444555679999998 77    6555 444443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.29  E-value=1.9e-09  Score=95.61  Aligned_cols=282  Identities=12%  Similarity=0.103  Sum_probs=168.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee-----------eEEEEEeCCEEEEecCCCcEEEEEcccCccceeEE
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS-----------VKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~   93 (353)
                      .+..++.++.++.|.-+|..+|+.+..+......           -..+.+.++.++.++.|+.|..+|.++++..-...
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            4667778888999999999999999888543211           12344567889999999999999999887321111


Q ss_pred             eeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecC------CCcEEEEEcCCceeeeecccc
Q 018591           94 VDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSW------DKTLKVWRVADLKCLESIKAH  167 (353)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~  167 (353)
                      ......  .                     +.....+    ....+.++++..      +|.|..+|.++++.+.++...
T Consensus       145 ~~~~~~--~---------------------~~~~~~P----~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  197 (668)
T 1kv9_A          145 TTDPAK--P---------------------YSITGAP----RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (668)
T ss_dssp             CSCTTS--S---------------------CBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             cCCCCC--c---------------------ceecCCC----EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence            100000  0                     0000111    112355666543      589999999999988776421


Q ss_pred             ---Cc----------------------------ceEEEEEe--CCeEEEEcCCC-------------------cEEEEeC
Q 018591          168 ---DD----------------------------AVNGLVAS--KGIVYSASADG-------------------KIKAWGK  195 (353)
Q Consensus       168 ---~~----------------------------~v~~i~~~--~~~l~~~~~dg-------------------~i~iwd~  195 (353)
                         ..                            ....+++.  .+.++.++.++                   .|..+|.
T Consensus       198 ~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~  277 (668)
T 1kv9_A          198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP  277 (668)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             CCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC
Confidence               00                            01134553  45777777665                   3999999


Q ss_pred             CCCCcccccceeeeec--cC------CceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeee-------cc
Q 018591          196 ELGKSHCHSLKGILEG--HK------DVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACE-------TK  257 (353)
Q Consensus       196 ~~~~~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~  257 (353)
                      ++++     ..-.++.  |.      ........+..+++   .++.++.+|.++++|..+++..+.....       +.
T Consensus       278 ~tG~-----~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          278 DTGK-----LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             TTCC-----EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             CCCc-----eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            9998     3333332  11      01112222334564   6889999999999999988544221100       00


Q ss_pred             ---------------------------ccceeEEEEEEcCcEEEE-----------------------------------
Q 018591          258 ---------------------------AHEMAVLCVCLVGEFLCS-----------------------------------  275 (353)
Q Consensus       258 ---------------------------~~~~~v~~~~~~~~~l~~-----------------------------------  275 (353)
                                                 ++.-...+++++..++++                                   
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence                                       000001233333333322                                   


Q ss_pred             -ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          276 -GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       276 -~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                       ...+|.|..||+.+++.......    ..+.....+...    +.+++.++.||.++.||.++++.+...+
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~----gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPY----PTHWNGGTLSTA----GNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEET----TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCccceEEEEeCCCCcEEEEccC----CCCCcCceeEeC----CCEEEEECCcccchhhhhhcChhheEec
Confidence             12358899999999885443322    122333334445    6788889999999999999999887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=1.5e-08  Score=90.71  Aligned_cols=239  Identities=10%  Similarity=0.013  Sum_probs=139.3

Q ss_pred             CccCceEEEEEC--CcEEEE-----EeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCc--------
Q 018591           14 GHVGSVSSLALC--GEFILS-----ASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSR--------   77 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~--------   77 (353)
                      +|...+..++|+  |++||-     |+.+..|++||+.+++.+... .+......++|+ ++.|+.++.+..        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCccccccccc
Confidence            466678888996  787773     333457999999999876542 111112455665 777887776643        


Q ss_pred             -----EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeee-cCCceEEEEEeC--CeEEEe-c---
Q 018591           78 -----IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIE-HADSISCLTVYN--GLIYSG-S---  145 (353)
Q Consensus        78 -----i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--~~l~~~-~---  145 (353)
                           |++|++.+........ ...+                           . |...+..+.+++  ++|+.. +   
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v-~~~~---------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLV-FGAI---------------------------PAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEE-ESCS---------------------------GGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             CCCcEEEEEECCCCcccceEE-EecC---------------------------CCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence                 8888887654221111 1110                           2 344567788888  555432 2   


Q ss_pred             CCCcEEEEEcCCce-eeeeccccCcceEEEEE-eCCeE-EEEcCC---CcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          146 WDKTLKVWRVADLK-CLESIKAHDDAVNGLVA-SKGIV-YSASAD---GKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       146 ~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~-~~~~l-~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                      .++.|+++|+.++. ....+..+......... .++.+ +....+   +.|..+|+.++...   ....+..+.... . 
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~~-~-  331 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---HWRDLIPERQQV-L-  331 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEECCCSSC-E-
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---ccEEEecCCCCE-E-
Confidence            23589999997763 34444455555444333 44544 444333   67999999876511   123344455544 3 


Q ss_pred             EEEcCCCCeEEeecCCC---cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCC----CeEEEEecCCC
Q 018591          220 VVVSDDGKWVYGGGSDG---FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSAD----KSIGIWKREAF  290 (353)
Q Consensus       220 ~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~iw~~~~~  290 (353)
                       .|+++++.|+....++   .|++|++..+.    ...........+..+++  +++.++....+    +.++.||+.++
T Consensus       332 -~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~----~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          332 -TVHSGSGYLFAEYMVDATARVEQFDYEGKR----VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             -EEEEETTEEEEEEEETTEEEEEEECTTSCE----EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             -EEEEECCEEEEEEEECCeeEEEEEECCCCe----eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence             8899888887665544   68889887542    11111112334444444  45555444333    78999998876


Q ss_pred             c
Q 018591          291 G  291 (353)
Q Consensus       291 ~  291 (353)
                      +
T Consensus       407 ~  407 (693)
T 3iuj_A          407 A  407 (693)
T ss_dssp             C
T ss_pred             e
Confidence            5

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.25  E-value=2e-09  Score=87.78  Aligned_cols=262  Identities=11%  Similarity=0.077  Sum_probs=150.5

Q ss_pred             CceEEEEEC--CcEEEEEe--CCCcEEEEeCCCceeeEEec-------cCceeeEEEEEe-CCEEEEecC------CCcE
Q 018591           17 GSVSSLALC--GEFILSAS--QGKDIIVWQQPDLRMFTKFG-------HGDGSVKAVVTV-GNKVFTAHQ------DSRI   78 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~--~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~l~s~~~------dg~i   78 (353)
                      .....|+++  |+++++..  .++.++||.+.+++.. .+.       .+-..+..++++ ...|+.+..      ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            688999996  77887754  2343566655455433 221       234578899998 345555442      4789


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEec---CCCcEEE
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGS---WDKTLKV  152 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~---~dg~v~i  152 (353)
                      .+||+.+++     .+..+.....                     ...+...+..+++++  +.+ ++-.   .++.|.+
T Consensus        96 ~~~d~~tg~-----~~~~~~~~~~---------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v  149 (343)
T 2qe8_A           96 VAWDTLNNQ-----LSRVIYLPPP---------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIR  149 (343)
T ss_dssp             EEEETTTTE-----EEEEEECCTT---------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEE
T ss_pred             EEEECCCCe-----EEEEEECChh---------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEE
Confidence            999998765     1111110000                     002334557888885  444 4433   5789999


Q ss_pred             EEcCCceeeeeccccCcce---EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591          153 WRVADLKCLESIKAHDDAV---NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       153 wd~~~~~~~~~~~~~~~~v---~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  229 (353)
                      ||+.+++....+..|....   ..+...+..+.+.+.++.++.|.                   .. +..++++|+++.|
T Consensus       150 ~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------------~~-~~gia~s~dg~~l  209 (343)
T 2qe8_A          150 VDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------------LG-VNGIVLDAENEWL  209 (343)
T ss_dssp             EETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------------CC-EEEEEECTTSCEE
T ss_pred             EECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-------------------cc-cceeEeccCCCEE
Confidence            9998888777665542211   11111222444555566654442                   11 2789999999988


Q ss_pred             EeecCCC-cEEEeecccccc----ceeeee--eccccc--eeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecccc
Q 018591          230 YGGGSDG-FVMGWEGNVEIV----RWKLAC--ETKAHE--MAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAIT  300 (353)
Q Consensus       230 ~~~~~dg-~i~i~d~~~~~~----~~~~~~--~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  300 (353)
                      +.+..++ .+..++......    ......  ...++.  ..-.++..+|.++++...++.|.+||..+++ ...+... 
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~-  287 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTD-  287 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEEC-
Confidence            8877665 444444321000    000000  001111  1224556668899998899999999985544 2222221 


Q ss_pred             CCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       301 ~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                      .+...+.+++|.++    +.++++.+..+.+
T Consensus       288 ~~~~~p~~va~~~~----g~l~v~~~~~~~~  314 (343)
T 2qe8_A          288 EKLSWTDSFNFGSD----GYLYFDCNQLHHS  314 (343)
T ss_dssp             GGGSCEEEEEECTT----SCEEEEECCGGGS
T ss_pred             CceecCCeeEECCC----CcEEEEeCccccc
Confidence            13456899999998    8888887755544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=1.5e-09  Score=88.46  Aligned_cols=274  Identities=9%  Similarity=-0.022  Sum_probs=162.4

Q ss_pred             CcEEEEEeCCC----cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec----------CCCcEEEEEcccCccc
Q 018591           26 GEFILSASQGK----DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH----------QDSRIRVWKVSRSSEN   89 (353)
Q Consensus        26 ~~~l~s~~~dg----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~----------~dg~i~~w~~~~~~~~   89 (353)
                      ...+++-..++    +|.+.|..+++.+.++.....+  .+.++  +++++.+.          .++.|.+||+.+.+  
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--  107 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--  107 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--
Confidence            34445555455    8889999999999998765555  57776  77777775          46899999999887  


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEE--EEcCCceeeee
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKV--WRVADLKCLES  163 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~i--wd~~~~~~~~~  163 (353)
                         .+..++....                  .+..  .......+.++|  ++++++..  +..|.+  +|..+   +.+
T Consensus       108 ---vv~~I~v~~~------------------~~~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~  161 (368)
T 1mda_H          108 ---PIADIELPDA------------------PRFS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQL  161 (368)
T ss_dssp             ---EEEEEEETTS------------------CSCC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEE
T ss_pred             ---EEEEEECCCc------------------cccc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceE
Confidence               3333221000                  0000  001233577777  67777654  467888  88876   344


Q ss_pred             ccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCC-----CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          164 IKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKEL-----GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       164 ~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      +.. .+. ..+.. ....+++.+.||.+.+.|+.+     ++... .....+... ..+ .  . .+++..++..+. +.
T Consensus       162 i~v-~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~-~~t~~i~vg-~~P-~--~-~~~~~~~~~vs~-~~  232 (368)
T 1mda_H          162 TKS-ASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA-QCTGAQNCS-SQA-A--Q-ANYPGMLVWAVA-SS  232 (368)
T ss_dssp             EEC-SSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC-CSCTTSCBC-SCC-E--E-ETTTTEEEECBS-SC
T ss_pred             EEC-CCc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE-EeeeeeeCC-CCc-c--c-cccCCEEEEEcC-CE
Confidence            422 111 11222 333666777899998899876     22000 000011111 112 2  3 555555555555 89


Q ss_pred             EEEeeccccccceeeeeec----------cccceeEEEEEEcCcEEEEecC---------CCeEEEEecCCCcceEEecc
Q 018591          238 VMGWEGNVEIVRWKLACET----------KAHEMAVLCVCLVGEFLCSGSA---------DKSIGIWKREAFGKLCRVGA  298 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~  298 (353)
                      +.+.|.............+          .........++++++.++++..         ++.+.++|+.+.+   .+..
T Consensus       233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---vv~~  309 (368)
T 1mda_H          233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGP  309 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEEC
T ss_pred             EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---EEEE
Confidence            9999986532111100000          0111122568888877776532         2456699999987   4444


Q ss_pred             ccCCCcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcCCCCCccccc
Q 018591          299 ITGHEGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       299 ~~~h~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +.... ....++|+||    ++ ++++.. .++.|.++|+.+.+.+.+..
T Consensus       310 i~vg~-~p~gi~~s~D----g~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          310 ISNGH-DSDAIIAAQD----GASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CEEEE-EECEEEECCS----SSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EECCC-CcceEEECCC----CCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            43322 5889999999    76 566666 59999999999998887665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=5.7e-08  Score=86.26  Aligned_cols=285  Identities=14%  Similarity=0.141  Sum_probs=160.5

Q ss_pred             CCCCceeeeeeCccCc-----------eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCc----eeeE-EEEEeC
Q 018591            3 CKSHRSLAVLSGHVGS-----------VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGD----GSVK-AVVTVG   66 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~-----------v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~v~-~~~~~~   66 (353)
                      ..+|+.+..+......           -..+++.+..++.++.|+.|..+|..+|+.+..+....    ..+. +....+
T Consensus        83 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~  162 (668)
T 1kv9_A           83 AASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK  162 (668)
T ss_dssp             TTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET
T ss_pred             CCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEEC
Confidence            4567777666543221           12345566788888999999999999999998875421    1111 112235


Q ss_pred             CEEEEecC------CCcEEEEEcccCccceeEEeecccccccee---eeecccceeEeecccceeee--eecCCceEEEE
Q 018591           67 NKVFTAHQ------DSRIRVWKVSRSSENVFRLVDTLPTTKDYL---GKFMKQSNYVQTRRHHKRLW--IEHADSISCLT  135 (353)
Q Consensus        67 ~~l~s~~~------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~  135 (353)
                      +.++.+..      +|.|..+|.++++..-...  ..+......   .........    ......|  .+.......++
T Consensus       163 ~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~--~~~~~p~~~~~~~~~~~~~~~----~~g~~~w~~~~gg~~w~~~a  236 (668)
T 1kv9_A          163 GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY--TVPGDPALPYEHPELREAAKT----WQGDQYWKLGGGGTVWDSMA  236 (668)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE--SSCCCTTSCCSSHHHHHHHTT----CCSSCHHHHCEECCCCSCEE
T ss_pred             CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec--ccCCCCCcccccccccccccc----CCccceeeeCCCCccccceE
Confidence            66666543      5899999999887321111  101000000   000000000    0000000  01222223466


Q ss_pred             EeC--CeEEEecCCC-------------------cEEEEEcCCceeeeeccc--cC-------cceE--EEEEeCC---e
Q 018591          136 VYN--GLIYSGSWDK-------------------TLKVWRVADLKCLESIKA--HD-------DAVN--GLVASKG---I  180 (353)
Q Consensus       136 ~~~--~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~--~~-------~~v~--~i~~~~~---~  180 (353)
                      +++  +.++.++.++                   .|..+|.++++.+..++.  |.       .+..  .+.+.+.   .
T Consensus       237 ~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~  316 (668)
T 1kv9_A          237 YDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKV  316 (668)
T ss_dssp             EETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEE
T ss_pred             EcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEE
Confidence            766  7777777665                   499999999999887754  21       2222  2223222   5


Q ss_pred             EEEEcCCCcEEEEeCCCCCcccccce------eeeeccCCc------------------------eeeEEEEcCCCCeEE
Q 018591          181 VYSASADGKIKAWGKELGKSHCHSLK------GILEGHKDV------------------------SLNSVVVSDDGKWVY  230 (353)
Q Consensus       181 l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~------------------------~v~~~~~~~~~~~l~  230 (353)
                      ++.++.+|.++++|..+++.......      ..+......                        ....++++|+...++
T Consensus       317 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~y  396 (668)
T 1kv9_A          317 LMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVY  396 (668)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEE
T ss_pred             EEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEE
Confidence            88999999999999999873200000      000000000                        002367777766555


Q ss_pred             ee------------------------------------cCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          231 GG------------------------------------GSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       231 ~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                      +.                                    ..+|.|..||..+++..++.......   ....+...+.+++
T Consensus       397 v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~---~~~~~~t~gg~vf  473 (668)
T 1kv9_A          397 IPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW---NGGTLSTAGNLVF  473 (668)
T ss_dssp             EEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEE
T ss_pred             EeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCC---cCceeEeCCCEEE
Confidence            31                                    13478999999998766655432211   1134455688999


Q ss_pred             EecCCCeEEEEecCCCcceEEe
Q 018591          275 SGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      .++.|+.++.||.++++.+...
T Consensus       474 ~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          474 QGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             EECTTSEEEEEETTTCCEEEEE
T ss_pred             EECCcccchhhhhhcChhheEe
Confidence            9999999999999999854443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.20  E-value=2.3e-07  Score=84.63  Aligned_cols=286  Identities=12%  Similarity=0.129  Sum_probs=174.2

Q ss_pred             cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEecc-------CceeeEEEEEe-CCEEEEecCCCcEEEEEcccC
Q 018591           16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGH-------GDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      ...|.++..+ ...|..|+.++-+..||..+++.......       ....|.++..+ ...|..|+.+ -|.+|+..++
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~  292 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD  292 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence            4568888875 44556666555599999877665433221       13568999887 5567777666 5888887665


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecc
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIK  165 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~  165 (353)
                      ..   ......+....                      .-....|.++...+ +.+..|+.++-|..|+..+........
T Consensus       293 ~~---~~~~~~~~~~~----------------------~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~  347 (795)
T 4a2l_A          293 SF---ASYSSNPVENG----------------------SLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRN  347 (795)
T ss_dssp             EE---EEECCCTTSTT----------------------SCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECC
T ss_pred             eE---EEEecCCCCCC----------------------CCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcC
Confidence            41   11111000000                      01345789998888 888899988889999876544322111


Q ss_pred             ------ccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee-------ccCCceeeEEEEcCCCCeEEe
Q 018591          166 ------AHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE-------GHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       166 ------~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~  231 (353)
                            .....|.++.. .++.+..|+.++-|..||..++.     ......       .-....|.+++..++++.|..
T Consensus       348 ~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi  422 (795)
T 4a2l_A          348 IPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR-----FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI  422 (795)
T ss_dssp             CTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC-----EEEECCC------CCSCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc-----EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE
Confidence                  12456888888 56688889988889999988765     221111       111234588888888875667


Q ss_pred             ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccc----cCCCcCe
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAI----TGHEGPV  306 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v  306 (353)
                      |+.++-+.+||..++................+.++..+ ...|..|+.+ -+.+||..+++ .......    .-....|
T Consensus       423 gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i  500 (795)
T 4a2l_A          423 GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQRS-FTTIEKEKDGTPVVSKQI  500 (795)
T ss_dssp             EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTTE-EEECCBCTTCCBCCCCCE
T ss_pred             EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCCe-EEEccccccccccCCceE
Confidence            77766799999887632111100001223467777776 2344555554 48889987653 2222111    1123578


Q ss_pred             EEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          307 KCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       307 ~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      .++...++    +.+.+... + -|..|+..+.+
T Consensus       501 ~~i~~d~~----g~lWigt~-~-Gl~~~~~~~~~  528 (795)
T 4a2l_A          501 TTLFRDSH----KRLWIGGE-E-GLSVFKQEGLD  528 (795)
T ss_dssp             EEEEECTT----CCEEEEES-S-CEEEEEEETTE
T ss_pred             EEEEECCC----CCEEEEeC-C-ceEEEeCCCCe
Confidence            99988887    76665554 4 47788876544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.19  E-value=1.9e-08  Score=83.41  Aligned_cols=250  Identities=14%  Similarity=0.093  Sum_probs=151.5

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccC-------ceeeEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHG-------DGSVKAVV   63 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~-------~~~v~~~~   63 (353)
                      ..+++.+.++..-..+  .++++  +++|+.+.          .++.|.++|..+++.+..+...       ...-..+.
T Consensus       106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~  183 (426)
T 3c75_H          106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA  183 (426)
T ss_dssp             TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred             CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence            4567777777755556  78886  77777665          4679999999999998877532       11233456


Q ss_pred             Ee--CCEEEEecC--CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-
Q 018591           64 TV--GNKVFTAHQ--DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-  138 (353)
Q Consensus        64 ~~--~~~l~s~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  138 (353)
                      ++  +++++.+..  ++.|.+.|+.+.+     .+..++..                            . ...+.... 
T Consensus       184 ~spDGk~lyV~n~~~~~~VsVID~~t~k-----vv~~I~v~----------------------------g-~~~~~p~g~  229 (426)
T 3c75_H          184 LTPDNKNLLFYQFSPAPAVGVVDLEGKT-----FDRMLDVP----------------------------D-CYHIFPASP  229 (426)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECC----------------------------S-EEEEEEEET
T ss_pred             EcCCCCEEEEEecCCCCeEEEEECCCCe-----EEEEEEcC----------------------------C-ceeeccCCC
Confidence            65  788888764  5789999998876     33333210                            0 01111111 


Q ss_pred             CeEEEecCCCcEEEEEcCCceeeee----ccccCcce-EEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee-
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLES----IKAHDDAV-NGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE-  210 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v-~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-  210 (353)
                      ..+++.+.||.+.+.+..+++....    +.....++ ..+.+  .++.++..+..+.+.+.|................ 
T Consensus       230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~  309 (426)
T 3c75_H          230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE  309 (426)
T ss_dssp             TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred             cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence            5566667788888888865554421    21112221 12333  3345555567889999998655411100000000 


Q ss_pred             -----c-cCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeeccc-cceeEEEEEEcCc-E
Q 018591          211 -----G-HKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGE-F  272 (353)
Q Consensus       211 -----~-~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~  272 (353)
                           + .... ...++++|+++.+++...          ++.|.++|..+.+    ....+.. ....-..+.++++ +
T Consensus       310 ~~i~~g~~p~g-~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k----vv~~I~vg~~P~gia~spDg~~~  384 (426)
T 3c75_H          310 AERADDWRPGG-WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE----RINKIELGHEIDSINVSQDAEPL  384 (426)
T ss_dssp             TTGGGTEEECS-SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEEEEEECEEEECCSSSCE
T ss_pred             cccccccccCC-ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe----EEEEEECCCCcCeEEEccCCCEE
Confidence                 0 0011 134789999887777642          3579999999884    3333322 2344556677788 7


Q ss_pred             EEEec-CCCeEEEEecCCCcce
Q 018591          273 LCSGS-ADKSIGIWKREAFGKL  293 (353)
Q Consensus       273 l~~~~-~dg~i~iw~~~~~~~~  293 (353)
                      +++.. .++.|.++|..+++..
T Consensus       385 lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          385 LYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEcCCCCeEEEEECCCCCEE
Confidence            77777 5999999999998843

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.19  E-value=3.6e-08  Score=85.74  Aligned_cols=281  Identities=9%  Similarity=-0.038  Sum_probs=164.6

Q ss_pred             CCcEEEEEeC-CCcEEEEeC-CCceeeEEeccCce-----------eeEEEEEeCCEEEEecCCCcEEEEEcccCcccee
Q 018591           25 CGEFILSASQ-GKDIIVWQQ-PDLRMFTKFGHGDG-----------SVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVF   91 (353)
Q Consensus        25 ~~~~l~s~~~-dg~v~vwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~   91 (353)
                      .+..++.++. ++.|.-+|. .+|+.+..+.....           .-..+...+..++.++.|+.+..+|..+++..-.
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            3566777777 899999999 99999988754321           0123455688899999999999999988873211


Q ss_pred             EEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecC------CCcEEEEEcCCceeeeecc
Q 018591           92 RLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSW------DKTLKVWRVADLKCLESIK  165 (353)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~  165 (353)
                      ......+.  .                     +.....++    ...+.+++++.      ++.|..+|.++++.+.++.
T Consensus       141 ~~~~~~~~--~---------------------~~~~~~P~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          141 VEVCDPKV--G---------------------STLTQAPF----VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EECCCGGG--T---------------------CBCCSCCE----EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ecCCCCCc--c---------------------ceeccCCE----EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            11110000  0                     00011111    12355666654      7999999999999887664


Q ss_pred             ccCcc-------------------------------------e-EEEEEe--CCeEEEEcCC----------------Cc
Q 018591          166 AHDDA-------------------------------------V-NGLVAS--KGIVYSASAD----------------GK  189 (353)
Q Consensus       166 ~~~~~-------------------------------------v-~~i~~~--~~~l~~~~~d----------------g~  189 (353)
                      .....                                     + ..+++.  .+.++.+..+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32110                                     0 123442  3466555532                35


Q ss_pred             EEEEeCCCCCcccccceeeeecc--C-------CceeeEEEEcCCCC---eEEeecCCCcEEEeeccccccceeeeeecc
Q 018591          190 IKAWGKELGKSHCHSLKGILEGH--K-------DVSLNSVVVSDDGK---WVYGGGSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~--~-------~~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      |..+|.++++     ..-.++..  .       ..+ .-+...++|+   .++.++.+|.+.++|..+++..+.......
T Consensus       274 v~Ald~~tG~-----~~W~~~~~~~d~~d~~~~~~p-~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          274 IWGRDLDTGM-----AKWGYQKTPHDEWDFAGVNQM-VLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             EEEEETTTCC-----EEEEEESSTTCSSCCCCCCCC-EEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             EEEEecCCCc-----EEEEecCCCCcccccccCCCC-EEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence            9999999987     33333211  1       111 1122234674   577889999999999988865544321110


Q ss_pred             c---------cce----------------------------eEEEEEEcCcEEEEec-----------------------
Q 018591          258 A---------HEM----------------------------AVLCVCLVGEFLCSGS-----------------------  277 (353)
Q Consensus       258 ~---------~~~----------------------------~v~~~~~~~~~l~~~~-----------------------  277 (353)
                      .         ...                            ...+++++..++++..                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence            0         000                            1123344444444332                       


Q ss_pred             --------------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          278 --------------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       278 --------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                                    .+|.|..||..+++.......    ...+....+...    +.+++.++.||.|+.||.++++.+.
T Consensus       428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~----~~~~~~~~~~t~----gg~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE----KFAAWGGTLYTK----GGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEET----TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceeccCccccCCCCCCeEEEEECCCCCEEEEecC----CCCccceeEEEC----CCEEEEEcCCCeEEEEECCCCCEEE
Confidence                          458899999999885443321    122222222333    4567778999999999999999887


Q ss_pred             ccc
Q 018591          344 DSE  346 (353)
Q Consensus       344 ~~~  346 (353)
                      +.+
T Consensus       500 ~~~  502 (571)
T 2ad6_A          500 NFK  502 (571)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.19  E-value=4.1e-08  Score=78.63  Aligned_cols=229  Identities=14%  Similarity=0.091  Sum_probs=132.2

Q ss_pred             eeeeeeCccCceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEE
Q 018591            8 SLAVLSGHVGSVSSLALC--GE-FILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~   82 (353)
                      .+..+..+.......+|+  ++ +++++..++.|..|+. +++ ...+..+...+..++++  ++.+++...++.|..|+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            344555566677888885  55 7788888899999997 454 34455556678889988  55555545557899998


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEE-----ecC----------
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYS-----GSW----------  146 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~-----~~~----------  146 (353)
                      .+ +..   ..+......                         .....+..+.+.+ ..+..     |..          
T Consensus       114 ~~-g~~---~~~~~~~~~-------------------------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~  164 (305)
T 3dr2_A          114 AD-GQA---HLLVGRYAG-------------------------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP  164 (305)
T ss_dssp             TT-SCE---EEEECEETT-------------------------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred             CC-CCE---EEEEeccCC-------------------------CccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence            75 331   111100000                         1123456677877 43444     432          


Q ss_pred             ---CCcEEEEEcCCceeeeeccccCcceEEEEEeCC--eEEEEcCC------CcEEEEeCCCCCcccccceeee-eccCC
Q 018591          147 ---DKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASAD------GKIKAWGKELGKSHCHSLKGIL-EGHKD  214 (353)
Q Consensus       147 ---dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~~~  214 (353)
                         .+.|..+|..+++.....  .......++++++  .++.+...      +.|..|++.....   .....+ .....
T Consensus       165 ~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l---~~~~~~~~~~~~  239 (305)
T 3dr2_A          165 ELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL---HDRRHFASVPDG  239 (305)
T ss_dssp             SSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE---EEEEEEECCSSS
T ss_pred             ccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc---cCCeEEEECCCC
Confidence               256778887666544332  3345678889433  56666554      7899999875431   011111 11223


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE--EcCcEEEEecCCCe
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC--LVGEFLCSGSADKS  281 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~  281 (353)
                      .+ ..++++++|++. ++..+| |.+|+....     ....+.... .+..+.  ++++.|+.++.++.
T Consensus       240 ~p-dgi~~d~~G~lw-v~~~~g-v~~~~~~g~-----~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          240 LP-DGFCVDRGGWLW-SSSGTG-VCVFDSDGQ-----LLGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             CC-CSEEECTTSCEE-ECCSSE-EEEECTTSC-----EEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             CC-CeEEECCCCCEE-EecCCc-EEEECCCCC-----EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence            33 679999999844 444554 999998543     122222112 233344  46777777776653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.17  E-value=3.8e-07  Score=83.14  Aligned_cols=288  Identities=11%  Similarity=0.097  Sum_probs=173.2

Q ss_pred             eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591           19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVD   95 (353)
Q Consensus        19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~   95 (353)
                      |.++..+ ...|..|+.++-|..||..+++..... ..+...|.++..+ ...+..++.++-+..||..++...   ...
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~---~~~  251 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK---NYL  251 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE---EEC
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE---Eee
Confidence            8888885 445666776656999998776654321 1234568888876 666777776656888997665411   111


Q ss_pred             ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecc-------cc
Q 018591           96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIK-------AH  167 (353)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~  167 (353)
                      ..+....                      .-....|.++...+ +.+..|+.+ -|.+||..+++......       ..
T Consensus       252 ~~~~~~~----------------------~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~  308 (795)
T 4a2l_A          252 HSPSNPK----------------------SISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLS  308 (795)
T ss_dssp             CCTTCTT----------------------SCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred             cCCCCcc----------------------ccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCC
Confidence            0000000                      01235688998887 778888776 58899987765443221       12


Q ss_pred             CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          168 DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       168 ~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      ...|.++.. .++.+..|+.++-|..|+.................-....|.++...+++. |..|+.++-+..|+..++
T Consensus       309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC
T ss_pred             CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC
Confidence            357889888 666889999888899998765541100000000111223358888888876 555777767999998765


Q ss_pred             ccceeeeee-c---cccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccc--cCCCcCeEEEEeecCCCCC
Q 018591          247 IVRWKLACE-T---KAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAI--TGHEGPVKCLQASPNAVGG  318 (353)
Q Consensus       247 ~~~~~~~~~-~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~  318 (353)
                      ......... .   ......|.++..+  ++.|..|+.++-|..||..+++. ......  ......|.++...++    
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~----  462 (795)
T 4a2l_A          388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGE----  462 (795)
T ss_dssp             CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSS----
T ss_pred             cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCC----
Confidence            321111000 0   0123467777765  44477888877799999887542 122110  023457899988887    


Q ss_pred             CeEEEEccCCCeEEEEEcCCCC
Q 018591          319 GFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       319 ~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +.+.+... +| +.+|+..+++
T Consensus       463 g~lwigt~-~G-l~~~~~~~~~  482 (795)
T 4a2l_A          463 GNLWLGTL-SA-LVRFNPEQRS  482 (795)
T ss_dssp             SCEEEEES-SC-EEEEETTTTE
T ss_pred             CCEEEEec-Cc-eeEEeCCCCe
Confidence            76655544 44 8888876643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.16  E-value=1.2e-07  Score=76.71  Aligned_cols=211  Identities=11%  Similarity=0.042  Sum_probs=121.6

Q ss_pred             eEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           19 VSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        19 v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      ..+.+|+   +.++++...++.|..||..+++... +. ....+.++.++ ...++.++.+ .|.+||.++++..   .+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~---~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT---LH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE---EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEE---EE
Confidence            4567775   4577777778999999998876542 32 24568888887 4444445544 4889998766521   11


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecC-------CCcEEEEEcCCceeeeeccc
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSW-------DKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~-------dg~v~iwd~~~~~~~~~~~~  166 (353)
                      ...+..                         .....+..+.+++ ..++.++.       .+.|..++  +++... +..
T Consensus       125 ~~~~~~-------------------------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~  176 (326)
T 2ghs_A          125 AELESD-------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA  176 (326)
T ss_dssp             ECSSTT-------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE
T ss_pred             eeCCCC-------------------------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC
Confidence            111000                         1123577888888 44454443       24566666  444332 222


Q ss_pred             cCcceEEEEEe-CC-eE-EEEcCCCcEEEEeCC--CC-CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591          167 HDDAVNGLVAS-KG-IV-YSASADGKIKAWGKE--LG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG  240 (353)
Q Consensus       167 ~~~~v~~i~~~-~~-~l-~~~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  240 (353)
                      +......++|+ ++ .+ ++.+.++.|.+||+.  ++ ..........+......+ ..++++++|.+.++...++.|.+
T Consensus       177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p-~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM-DGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE-EEEEECTTSCEEEEEETTTEEEE
T ss_pred             CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC-CeeEECCCCCEEEEEeCCCEEEE
Confidence            33456788884 33 44 455667899999986  44 311101111122223334 78999999987777766788999


Q ss_pred             eeccccccceeeeeeccccceeEEEEEEc
Q 018591          241 WEGNVEIVRWKLACETKAHEMAVLCVCLV  269 (353)
Q Consensus       241 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (353)
                      ||....     ....+..+...+.++++.
T Consensus       256 ~d~~g~-----~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          256 YDTDGN-----HIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             ECTTCC-----EEEEEECSCSBEEEEEEE
T ss_pred             ECCCCC-----EEEEEECCCCCcEEEEEe
Confidence            998432     222233333446666653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.15  E-value=8.2e-08  Score=83.62  Aligned_cols=279  Identities=13%  Similarity=0.110  Sum_probs=154.9

Q ss_pred             CCCCceeeeeeCccCc---------eEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce----eeE-EEEEeCC-
Q 018591            3 CKSHRSLAVLSGHVGS---------VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG----SVK-AVVTVGN-   67 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~---------v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~----~v~-~~~~~~~-   67 (353)
                      .++|+.+..+......         -..+++.+..++.++.|+.|..+|..+|+.+........    .+. +-...+. 
T Consensus        85 ~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~  164 (582)
T 1flg_A           85 AKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDG  164 (582)
T ss_dssp             SSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECT
T ss_pred             CCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCC
Confidence            4577777766644321         123445677888899999999999999999877654321    111 1112223 


Q ss_pred             -----EEEEec------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee-----------
Q 018591           68 -----KVFTAH------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI-----------  125 (353)
Q Consensus        68 -----~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  125 (353)
                           .++.++      .+|.|..+|.++++..-.     .+.....+... ...............|.           
T Consensus       165 ~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~-----~~~~~~~~~p~-~~~~~~~~g~~g~~~w~~~~~~~~g~~~  238 (582)
T 1flg_A          165 KTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM-----RPFVEGHMGRL-NGKDSTVTGDVKAPSWPDDRNSPTGKVE  238 (582)
T ss_dssp             TTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE-----EESSTTCEEEE-TTEEEEESSCTTCTTSCBCTTSTTSBCG
T ss_pred             cCCcEEEEEeccccccCCCCEEEEEECCCCCEEee-----cCCCccccccc-cCcccccccccccccCCCcccccccccc
Confidence                 666665      378999999988873221     11110000000 00000000000000000           


Q ss_pred             ----ecCCceEEEEEeC--CeEEEecC--------------------C----CcEEEEEcCCceeeeeccc--cC-----
Q 018591          126 ----EHADSISCLTVYN--GLIYSGSW--------------------D----KTLKVWRVADLKCLESIKA--HD-----  168 (353)
Q Consensus       126 ----~~~~~i~~~~~~~--~~l~~~~~--------------------d----g~v~iwd~~~~~~~~~~~~--~~-----  168 (353)
                          +....-..+++++  ++++.+..                    |    +.|..+|..+++.+..++.  |.     
T Consensus       239 ~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~  318 (582)
T 1flg_A          239 SWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFS  318 (582)
T ss_dssp             GGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             ccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCccccc
Confidence                0000112345555  56665542                    2    6899999999999887643  21     


Q ss_pred             ---cceEEEEE--eCC----eEEEEcCCCcEEEEeCCCCCcccccceeeeeccC------------Cc------------
Q 018591          169 ---DAVNGLVA--SKG----IVYSASADGKIKAWGKELGKSHCHSLKGILEGHK------------DV------------  215 (353)
Q Consensus       169 ---~~v~~i~~--~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------~~------------  215 (353)
                         .++. +..  .++    .++.++.+|.++++|.++++..     .......            ..            
T Consensus       319 ~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l-----w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~  392 (582)
T 1flg_A          319 GNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ-----NAFPFVDNITWASHIDLKTGRPVEREGQRPPLP  392 (582)
T ss_dssp             CCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE-----EEEESSSCCCSEEEECTTTCCEEECTTCSCCCC
T ss_pred             CCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe-----cccccccCccccccccccCCCEeEccccCCccc
Confidence               1221 121  122    6788999999999999988732     1111000            00            


Q ss_pred             --------------------eeeEEEEcCCCCeEEeec---------------------------------CCCcEEEee
Q 018591          216 --------------------SLNSVVVSDDGKWVYGGG---------------------------------SDGFVMGWE  242 (353)
Q Consensus       216 --------------------~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d  242 (353)
                                          ....++++|+...+++..                                 .+|.|..||
T Consensus       393 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D  472 (582)
T 1flg_A          393 EPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMD  472 (582)
T ss_dssp             CTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEEC
T ss_pred             cccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEE
Confidence                                002456777655554432                                 357899999


Q ss_pred             ccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          243 GNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      +.+++..++.........   ..+...+.+++.|+.||.++.||.++++.+...
T Consensus       473 ~~tG~~~W~~~~~~~~~~---g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          473 PVSGKVVWEHKEHLPLWA---GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             TTTCCEEEEEEESSCCCS---CCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCEEEEecCCCCCcc---cceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence            999876666543222111   123345778888999999999999999955443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.14  E-value=3.5e-07  Score=79.64  Aligned_cols=264  Identities=10%  Similarity=0.067  Sum_probs=144.7

Q ss_pred             EEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCc----eeeE-EEEEeCCEEEEecC------CCcEEEEEcccCccce
Q 018591           22 LALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGD----GSVK-AVVTVGNKVFTAHQ------DSRIRVWKVSRSSENV   90 (353)
Q Consensus        22 ~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~v~-~~~~~~~~l~s~~~------dg~i~~w~~~~~~~~~   90 (353)
                      +++.+..++.++.|+.|..+|..+|+.+.......    ..+. +....+..++.++.      +|.|..+|.++++..-
T Consensus       111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  190 (571)
T 2ad6_A          111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW  190 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence            45567788888999999999999999988764321    0121 11224666776665      7899999999887321


Q ss_pred             eEEeecccccccee-eeecccceeEee-cccceeee-----e-ecCCceEEEEEeC--CeEEEecCC-------------
Q 018591           91 FRLVDTLPTTKDYL-GKFMKQSNYVQT-RRHHKRLW-----I-EHADSISCLTVYN--GLIYSGSWD-------------  147 (353)
Q Consensus        91 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~-----~-~~~~~i~~~~~~~--~~l~~~~~d-------------  147 (353)
                      ...  ..+...... ...........- .......|     . +-...-..+++.+  +.++.+..+             
T Consensus       191 ~~~--~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~  268 (571)
T 2ad6_A          191 RAF--ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEE--SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEc--cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence            111  100000000 000000000000 00000000     0 0000011234444  455555432             


Q ss_pred             ---CcEEEEEcCCceeeeecccc----------CcceEEEEE-eCC----eEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591          148 ---KTLKVWRVADLKCLESIKAH----------DDAVNGLVA-SKG----IVYSASADGKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       148 ---g~v~iwd~~~~~~~~~~~~~----------~~~v~~i~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  209 (353)
                         +.|..+|.++++.+..++..          ..++. +.. .++    .++.++.+|.+.++|..+++..     ...
T Consensus       269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~-----w~~  342 (571)
T 2ad6_A          269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI-----VAE  342 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE-----EEE
T ss_pred             eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE-----eee
Confidence               35999999999988776532          12221 111 133    4677888999999999988732     111


Q ss_pred             ecc------------CCce--------------------------eeEEEEcCCCCeEEeec------------------
Q 018591          210 EGH------------KDVS--------------------------LNSVVVSDDGKWVYGGG------------------  233 (353)
Q Consensus       210 ~~~------------~~~~--------------------------v~~~~~~~~~~~l~~~~------------------  233 (353)
                      ...            ...+                          -..++++|+..++++..                  
T Consensus       343 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~  422 (571)
T 2ad6_A          343 KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ  422 (571)
T ss_dssp             ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred             cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCC
Confidence            100            0000                          02467888777666543                  


Q ss_pred             -------------------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceE
Q 018591          234 -------------------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       234 -------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                                         .+|.+..||..+++..++.........   ..+...+..++.++.||.|+.||.++++...
T Consensus       423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~---~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG---GTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS---BCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc---eeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence                               357899999998866665433211111   1233457778889999999999999998554


Q ss_pred             Ee
Q 018591          295 RV  296 (353)
Q Consensus       295 ~~  296 (353)
                      ..
T Consensus       500 ~~  501 (571)
T 2ad6_A          500 NF  501 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.13  E-value=6.6e-08  Score=73.57  Aligned_cols=187  Identities=12%  Similarity=0.205  Sum_probs=125.0

Q ss_pred             ceeeeeeCccC--ceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCce-eeEEEEEeCCEEE-EecCCCcEEEE
Q 018591            7 RSLAVLSGHVG--SVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-SVKAVVTVGNKVF-TAHQDSRIRVW   81 (353)
Q Consensus         7 ~~~~~l~~h~~--~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~-s~~~dg~i~~w   81 (353)
                      +.++++. |..  -...|.|+ +.+.++.+.+|.|+++|+++++.+..+ -... .-..+.+.++.|+ ....++.+.+|
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEE
T ss_pred             EEEEEEc-CCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEE
Confidence            4455563 433  34788897 566777788899999999999998887 3222 1234677755544 45578899999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  161 (353)
                      |.++.+     .+.+++.                            ...-..+++..+.|+.+..++.|.++|..+.+.+
T Consensus       122 D~~Tl~-----~~~ti~~----------------------------~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~  168 (268)
T 3nok_A          122 SGMPPQ-----RERTTRY----------------------------SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALV  168 (268)
T ss_dssp             ETTTTE-----EEEEEEC----------------------------SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEE
T ss_pred             ECCcCc-----EEEEEeC----------------------------CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEE
Confidence            998876     4444332                            1112355566667777777899999999998888


Q ss_pred             eeccc--cC---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeeec------------cCCceeeEEEEc
Q 018591          162 ESIKA--HD---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILEG------------HKDVSLNSVVVS  223 (353)
Q Consensus       162 ~~~~~--~~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~  223 (353)
                      ..+.-  +.   ..++.+.+.++.+++.. .+..|.+.|.++++     ....+..            ....+.+.+|++
T Consensus       169 ~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~-----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~d  243 (268)
T 3nok_A          169 GAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGT-----VVGVIDASALTRAVAGQVTNPEAVLNGIAVE  243 (268)
T ss_dssp             EEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCB-----EEEEEECHHHHHHHTTTCCCTTCCEEEEEEC
T ss_pred             EEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCc-----EEEEEECCCCcccccccccCcCCceEEEEEc
Confidence            77643  22   24567788666665555 57899999999987     3332221            122345899999


Q ss_pred             CCCCeEEeec
Q 018591          224 DDGKWVYGGG  233 (353)
Q Consensus       224 ~~~~~l~~~~  233 (353)
                      |+++.|++.+
T Consensus       244 p~~~rlfVTG  253 (268)
T 3nok_A          244 PGSGRIFMTG  253 (268)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCEEEEeC
Confidence            9876665544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.13  E-value=4.7e-07  Score=78.83  Aligned_cols=288  Identities=11%  Similarity=0.061  Sum_probs=152.0

Q ss_pred             CCCceeeeeeCccCc-----------eEEEEE--CCcE----EEEEeCCCcEEEEeCCCceeeEEeccCce----eeE-E
Q 018591            4 KSHRSLAVLSGHVGS-----------VSSLAL--CGEF----ILSASQGKDIIVWQQPDLRMFTKFGHGDG----SVK-A   61 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~-----------v~~~~~--~~~~----l~s~~~dg~v~vwd~~~~~~~~~~~~~~~----~v~-~   61 (353)
                      .+|+.+..++.....           ...+++  .+..    ++.++.|+.|..+|..+|+.+........    .+. +
T Consensus        82 ~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ss  161 (599)
T 1w6s_A           82 DPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA  161 (599)
T ss_dssp             CTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC
T ss_pred             CCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecC
Confidence            466766666533211           123455  4444    88888999999999999999877643220    121 1


Q ss_pred             EEEeCCEEEEec------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeE------eecccceeeeeecCC
Q 018591           62 VVTVGNKVFTAH------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYV------QTRRHHKRLWIEHAD  129 (353)
Q Consensus        62 ~~~~~~~l~s~~------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  129 (353)
                      -...+..++.++      .+|.|+.+|.++++..-..... .+.....+..........      ....-....+..-..
T Consensus       162 P~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~-~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~  240 (599)
T 1w6s_A          162 PYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT-GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGG  240 (599)
T ss_dssp             CEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS-SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCC
T ss_pred             CEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC-CCccccccccccccccccccccccccccCCCcceecCCC
Confidence            122356666665      3789999999988732111100 000000000000000000      000000000000000


Q ss_pred             ce-EEEEEeC--CeEEEecCC----------------CcEEEEEcCCceeeeeccccC----------cceEEEEEe--C
Q 018591          130 SI-SCLTVYN--GLIYSGSWD----------------KTLKVWRVADLKCLESIKAHD----------DAVNGLVAS--K  178 (353)
Q Consensus       130 ~i-~~~~~~~--~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~~~~----------~~v~~i~~~--~  178 (353)
                      .+ ..+++.+  ++++.+..+                +.|..+|.++++.+..++...          .++. +...  +
T Consensus       241 ~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~  319 (599)
T 1w6s_A          241 TNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD  319 (599)
T ss_dssp             CCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT
T ss_pred             ccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccC
Confidence            11 1234444  566666554                479999999999887765422          1221 2221  2


Q ss_pred             C----eEEEEcCCCcEEEEeCCCCCcccccceee-------eeccCCce--------------------------eeEEE
Q 018591          179 G----IVYSASADGKIKAWGKELGKSHCHSLKGI-------LEGHKDVS--------------------------LNSVV  221 (353)
Q Consensus       179 ~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~--------------------------v~~~~  221 (353)
                      +    .++.++.+|.+.++|.++++.........       .......+                          -..++
T Consensus       320 G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a  399 (599)
T 1w6s_A          320 GKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDS  399 (599)
T ss_dssp             SCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCE
T ss_pred             CcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCcc
Confidence            3    56778899999999999887321110000       00000000                          12456


Q ss_pred             EcCCCCeEEee---------------------------------c------CCCcEEEeeccccccceeeeeecccccee
Q 018591          222 VSDDGKWVYGG---------------------------------G------SDGFVMGWEGNVEIVRWKLACETKAHEMA  262 (353)
Q Consensus       222 ~~~~~~~l~~~---------------------------------~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  262 (353)
                      ++|+..++++.                                 +      ..|.+..||+.+++..++.........  
T Consensus       400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~--  477 (599)
T 1w6s_A          400 YDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG--  477 (599)
T ss_dssp             EETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS--
T ss_pred             CCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC--
Confidence            67665555432                                 1      347888999998876666543221111  


Q ss_pred             EEEEEEcCcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          263 VLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       263 v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                       -.+...+.+++.++.||.++.||.++++.+...
T Consensus       478 -g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          478 -GTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             -BCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             -cceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence             123445788888999999999999999965444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.13  E-value=1.4e-07  Score=71.16  Aligned_cols=191  Identities=13%  Similarity=0.131  Sum_probs=127.1

Q ss_pred             CCceeeeeeCccC--ceEEEEEC-CcEEEEEeCC--CcEEEEeCCCceeeEEeccCcee-eEEEEEeCCEEE-EecCCCc
Q 018591            5 SHRSLAVLSGHVG--SVSSLALC-GEFILSASQG--KDIIVWQQPDLRMFTKFGHGDGS-VKAVVTVGNKVF-TAHQDSR   77 (353)
Q Consensus         5 ~~~~~~~l~~h~~--~v~~~~~~-~~~l~s~~~d--g~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~-s~~~dg~   77 (353)
                      +.+.++++. |..  -...+.|+ +.+..+.+.+  ..|+.+|+.+++.+..+...... -..+.+.++.|+ ....++.
T Consensus         8 ~~~v~~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~   86 (243)
T 3mbr_X            8 GYRVVKRYP-HDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE   86 (243)
T ss_dssp             CEEEEEEEE-CCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             ceEEEEEcC-CCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE
Confidence            456677774 543  46689998 4455555554  48999999999999887643322 234566665555 4457889


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCC
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~  157 (353)
                      +.++|.++.+     .+.+++..                            ..=..++...+.|+.+..++.|.++|..+
T Consensus        87 v~v~D~~tl~-----~~~ti~~~----------------------------~~Gwglt~dg~~L~vSdgs~~l~~iDp~t  133 (243)
T 3mbr_X           87 GFVYDLATLT-----PRARFRYP----------------------------GEGWALTSDDSHLYMSDGTAVIRKLDPDT  133 (243)
T ss_dssp             EEEEETTTTE-----EEEEEECS----------------------------SCCCEEEECSSCEEEECSSSEEEEECTTT
T ss_pred             EEEEECCcCc-----EEEEEeCC----------------------------CCceEEeeCCCEEEEECCCCeEEEEeCCC
Confidence            9999998876     44444321                            12245566666666666789999999999


Q ss_pred             ceeeeecccc--C---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeee------------ccCCceeeE
Q 018591          158 LKCLESIKAH--D---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILE------------GHKDVSLNS  219 (353)
Q Consensus       158 ~~~~~~~~~~--~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~v~~  219 (353)
                      .+.+.+++-.  .   ..++.+.+.++.+++.. .+..|.+.|.++++     ....+.            .....+.+.
T Consensus       134 ~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~-----V~~~idl~~l~~~~~~~~~~~~~vlNG  208 (243)
T 3mbr_X          134 LQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGK-----VVAWIDLQALVPDADALTDSTNDVLNG  208 (243)
T ss_dssp             CCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCB-----EEEEEECGGGSTTTTSCCCTTSSCEEE
T ss_pred             CeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCC-----EEEEEECCcCccccccccCCcCCceEE
Confidence            8888776432  1   34567777667555554 57899999999987     333222            112335589


Q ss_pred             EEEcCCCCeEEeecC
Q 018591          220 VVVSDDGKWVYGGGS  234 (353)
Q Consensus       220 ~~~~~~~~~l~~~~~  234 (353)
                      ++++|+++.|++.+.
T Consensus       209 IA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          209 IAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEETTTTEEEEEET
T ss_pred             EEEcCCCCEEEEECC
Confidence            999998777666553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.11  E-value=8.2e-08  Score=73.08  Aligned_cols=190  Identities=15%  Similarity=0.148  Sum_probs=127.1

Q ss_pred             CceeeeeeCccCc--eEEEEEC-CcEEEEEeCCC--cEEEEeCCCceeeEEeccCcee-eEEEEEeCCEEEEe-cCCCcE
Q 018591            6 HRSLAVLSGHVGS--VSSLALC-GEFILSASQGK--DIIVWQQPDLRMFTKFGHGDGS-VKAVVTVGNKVFTA-HQDSRI   78 (353)
Q Consensus         6 ~~~~~~l~~h~~~--v~~~~~~-~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~-~~dg~i   78 (353)
                      .+.++++. |...  ...|.|+ +.+..+.+.+|  .|+++|+++++.+..+...... -..+.+.++.|+.. ..++.+
T Consensus        31 ~~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           31 YQIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             eEEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            45566664 4433  4788886 66666777766  8999999999999888654322 23466776666654 467899


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~  158 (353)
                      .++|.++.+     .+.+++..                            ..=..+++..+.|+.+..++.|.++|..+.
T Consensus       110 ~v~D~~t~~-----~~~ti~~~----------------------------~eG~glt~dg~~L~~SdGs~~i~~iDp~T~  156 (262)
T 3nol_A          110 FVWNIRNLR-----QVRSFNYD----------------------------GEGWGLTHNDQYLIMSDGTPVLRFLDPESL  156 (262)
T ss_dssp             EEEETTTCC-----EEEEEECS----------------------------SCCCCEEECSSCEEECCSSSEEEEECTTTC
T ss_pred             EEEECccCc-----EEEEEECC----------------------------CCceEEecCCCEEEEECCCCeEEEEcCCCC
Confidence            999998876     44443321                            111345555666666666788999999998


Q ss_pred             eeeeecccc--C---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeeec-----------cCCceeeEEE
Q 018591          159 KCLESIKAH--D---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILEG-----------HKDVSLNSVV  221 (353)
Q Consensus       159 ~~~~~~~~~--~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~  221 (353)
                      +.+..+.-.  .   ..++.+.+.++.+++.. .+..|.+.|.++++     ....+..           ....+.+.++
T Consensus       157 ~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~-----V~~~Id~~~L~~~~~~~~~~~~vlNGIA  231 (262)
T 3nol_A          157 TPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGK-----VTGIIDLNGILAEAGPLPSPIDVLNGIA  231 (262)
T ss_dssp             SEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCB-----EEEEEECTTGGGGSCSCCSSCCCEEEEE
T ss_pred             eEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCc-----EEEEEECCcCccccccccCcCCceEEEE
Confidence            888776432  2   33456777666565555 57899999999987     3333222           1123448999


Q ss_pred             EcCCCCeEEeecC
Q 018591          222 VSDDGKWVYGGGS  234 (353)
Q Consensus       222 ~~~~~~~l~~~~~  234 (353)
                      ++|+++.|++.+.
T Consensus       232 ~dp~~~~lfVTGK  244 (262)
T 3nol_A          232 WDKEHHRLFVTGK  244 (262)
T ss_dssp             EETTTTEEEEEET
T ss_pred             EcCCCCEEEEECC
Confidence            9998887777654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.11  E-value=1.4e-07  Score=82.01  Aligned_cols=281  Identities=10%  Similarity=-0.005  Sum_probs=162.2

Q ss_pred             CCcEEEEEeC-CCcEEEEeC-CCceeeEEeccCcee-----------eEEEEE--eCCE----EEEecCCCcEEEEEccc
Q 018591           25 CGEFILSASQ-GKDIIVWQQ-PDLRMFTKFGHGDGS-----------VKAVVT--VGNK----VFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        25 ~~~~l~s~~~-dg~v~vwd~-~~~~~~~~~~~~~~~-----------v~~~~~--~~~~----l~s~~~dg~i~~w~~~~   85 (353)
                      .+..|+.++. ++.|.-+|. .+|+.+..+......           ...+.+  .+..    ++.++.|+.|..+|..+
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence            3566777777 899999999 999999887543211           123455  4555    88888999999999988


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEec------CCCcEEEEEcCCce
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGS------WDKTLKVWRVADLK  159 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~------~dg~v~iwd~~~~~  159 (353)
                      ++..-.........  .                     +.-...+    ....+.+++++      .+|.|+.+|.++++
T Consensus       141 G~~~W~~~~~~~~~--~---------------------~~~~ssP----~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~  193 (599)
T 1w6s_A          141 GETVWKVENSDIKV--G---------------------STLTIAP----YVVKDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (599)
T ss_dssp             CCEEEEEECCCGGG--T---------------------CBCCSCC----EEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             CCEEEeecCCCCCc--c---------------------ceeecCC----EEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence            87321111100000  0                     0000111    11235566665      38999999999999


Q ss_pred             eeeeccccCcc-------------------------------------e-EEEEE--eCCeEEEEcCC------------
Q 018591          160 CLESIKAHDDA-------------------------------------V-NGLVA--SKGIVYSASAD------------  187 (353)
Q Consensus       160 ~~~~~~~~~~~-------------------------------------v-~~i~~--~~~~l~~~~~d------------  187 (353)
                      .+.++......                                     + ..+++  ..+.++.+..+            
T Consensus       194 ~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd  273 (599)
T 1w6s_A          194 QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGD  273 (599)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             EEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCC
Confidence            88766432111                                     0 02233  44567766655            


Q ss_pred             ----CcEEEEeCCCCCcccccceeeeeccCC---------ceeeEEEEc-CCC---CeEEeecCCCcEEEeeccccccce
Q 018591          188 ----GKIKAWGKELGKSHCHSLKGILEGHKD---------VSLNSVVVS-DDG---KWVYGGGSDGFVMGWEGNVEIVRW  250 (353)
Q Consensus       188 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~  250 (353)
                          +.|..+|.++++     ..-.++....         .+ .-+... .+|   ..++.++.+|.+.++|.++++..+
T Consensus       274 ~~y~~sv~Ald~~TG~-----~~W~~q~~~~d~wd~d~~~~p-~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          274 NKWTMTIFGRDADTGE-----AKFGYQKTPHDEWDYAGVNVM-MLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             CTTSSEEEEEETTTCC-----EEEEEESSTTCSSCCCCCCCC-EEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccceEEEEeCCCCc-----eeeEeecCCCccccccCCCcc-EEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence                379999999987     3333322111         11 112222 467   467788999999999999886555


Q ss_pred             eeeeec-----------cc--------------------------cceeEEEEEEcCcEEEEe-----------------
Q 018591          251 KLACET-----------KA--------------------------HEMAVLCVCLVGEFLCSG-----------------  276 (353)
Q Consensus       251 ~~~~~~-----------~~--------------------------~~~~v~~~~~~~~~l~~~-----------------  276 (353)
                      ......           .+                          +.-...+++++..++++.                 
T Consensus       348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~  427 (599)
T 1w6s_A          348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA  427 (599)
T ss_dssp             EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred             cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence            432110           00                          000011222222222111                 


Q ss_pred             ----------------c------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEE
Q 018591          277 ----------------S------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW  334 (353)
Q Consensus       277 ----------------~------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw  334 (353)
                                      +      .+|.|.-||+.+++.......    ..+...-.....    +.+++.++.||.++.|
T Consensus       428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~----~~~~~~g~~~ta----gg~vf~gt~dg~l~A~  499 (599)
T 1w6s_A          428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME----RFAVWGGTMATA----GDLVFYGTLDGYLKAR  499 (599)
T ss_dssp             TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEET----TTEEEEECTTSEEEEE
T ss_pred             CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC----CCCccCcceEec----CCEEEEECCCCeEEEE
Confidence                            1      458899999999885443321    111111112223    5677779999999999


Q ss_pred             EcCCCCCccccc
Q 018591          335 WVSKQSSTSDSE  346 (353)
Q Consensus       335 ~~~~~~~~~~~~  346 (353)
                      |.++++.+.+.+
T Consensus       500 D~~tG~~lW~~~  511 (599)
T 1w6s_A          500 DSDTGDLLWKFK  511 (599)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCCEEEEee
Confidence            999999887664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.10  E-value=8.4e-07  Score=80.74  Aligned_cols=289  Identities=11%  Similarity=0.072  Sum_probs=170.5

Q ss_pred             cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec--------------cCceeeEEEEEe-CCEEEEecCCCcEE
Q 018591           16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG--------------HGDGSVKAVVTV-GNKVFTAHQDSRIR   79 (353)
Q Consensus        16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~l~s~~~dg~i~   79 (353)
                      ...|.++..+ ...|..|+..+-|.++|..+++......              .....|.++..+ ...|..|+.++-|.
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~  336 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGIN  336 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEE
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEE
Confidence            3568999886 5567777775678899987665432211              124578888888 56788888788888


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCc
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~  158 (353)
                      .++........+..........                       .-....|.++...+ +.|..|+.++-|..||..++
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          337 FISNAPPTFHTWSYSPTQMNES-----------------------SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKR  393 (781)
T ss_dssp             EECSSCCSCEEEC----CCCSS-----------------------CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEE
T ss_pred             EeCCCCCcceeeccCccccccC-----------------------CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCC
Confidence            8887655421111000000000                       01335688898887 78888887777999998765


Q ss_pred             eeeeec---cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEEcCCCCeEEeec
Q 018591          159 KCLESI---KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       159 ~~~~~~---~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                      +.....   ......|.++.. .++.|..|+.++.|..+|..+++     ...... ......|.++...+++.+.+ |+
T Consensus       394 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt  467 (781)
T 3v9f_A          394 VAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-----FQIIELEKNELLDVRVFYEDKNKKIWI-GT  467 (781)
T ss_dssp             EEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-----EEECCSTTTCCCCEEEEEECTTSEEEE-EE
T ss_pred             eEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-----EEEeccCCCCCCeEEEEEECCCCCEEE-EE
Confidence            433211   123467888888 56788888887889999987765     211111 11223358888888876444 44


Q ss_pred             CCCcEEEeeccccccceeeeee-ccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccC-CCcCeEEEE
Q 018591          234 SDGFVMGWEGNVEIVRWKLACE-TKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITG-HEGPVKCLQ  310 (353)
Q Consensus       234 ~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~  310 (353)
                      .. -+..||..++......... .......+.++..+ ...|..|+.++-+..||..+.+ ........+ ....|.++.
T Consensus       468 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~  545 (781)
T 3v9f_A          468 HA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIY  545 (781)
T ss_dssp             TT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEE
T ss_pred             CC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEE
Confidence            44 4888988765321111000 00113567777776 3345556654447788876643 222221111 235689998


Q ss_pred             eecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          311 ASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       311 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      ..++    |.+.++.. +|-|..|+..+++
T Consensus       546 ~d~~----g~lWi~T~-~Glv~~~d~~~~~  570 (781)
T 3v9f_A          546 RSSK----GQMWLATG-EGLVCFPSARNFD  570 (781)
T ss_dssp             ECTT----SCEEEEET-TEEEEESCTTTCC
T ss_pred             ECCC----CCEEEEEC-CCceEEECCCCCc
Confidence            8887    77665544 7755778776553

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.09  E-value=5.5e-08  Score=87.10  Aligned_cols=237  Identities=15%  Similarity=0.148  Sum_probs=134.5

Q ss_pred             CceeeEEEEEe--CCEEEE-----ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           55 GDGSVKAVVTV--GNKVFT-----AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        55 ~~~~v~~~~~~--~~~l~s-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      |...+..+.|+  +++|+-     |+....|++||+++++....    .++                           +.
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----~~~---------------------------~~  175 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----PLK---------------------------DV  175 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE----EEE---------------------------EE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc----ccC---------------------------Cc
Confidence            45577788887  777762     34446799999998862111    000                           11


Q ss_pred             CCceEEEEEe-CCeEEEecCCC-------------cEEEEEcCCce----eeeeccc-cCcceEEEEEeCC--eE-EEEc
Q 018591          128 ADSISCLTVY-NGLIYSGSWDK-------------TLKVWRVADLK----CLESIKA-HDDAVNGLVASKG--IV-YSAS  185 (353)
Q Consensus       128 ~~~i~~~~~~-~~~l~~~~~dg-------------~v~iwd~~~~~----~~~~~~~-~~~~v~~i~~~~~--~l-~~~~  185 (353)
                        ....++|+ .+.|+.++.+.             .|++|++.+..    .+..... |......+.++++  .+ ++.+
T Consensus       176 --k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~  253 (693)
T 3iuj_A          176 --KFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAA  253 (693)
T ss_dssp             --ESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred             --eeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence              01233444 35566665553             49999987654    3333333 4455677888443  34 3333


Q ss_pred             ---CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCC---CcEEEeecccccc-ceeeeeecc
Q 018591          186 ---ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSD---GFVMGWEGNVEIV-RWKLACETK  257 (353)
Q Consensus       186 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d---g~i~i~d~~~~~~-~~~~~~~~~  257 (353)
                         .+..|+++|+.++..    ....+..+.... ... +++++..|+ ....+   +.|..+++..+.. .++.   +.
T Consensus       254 ~~~~~~~i~~~d~~~~~~----~~~~l~~~~~~~-~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~---l~  324 (693)
T 3iuj_A          254 NSTSGNRLYVKDLSQENA----PLLTVQGDLDAD-VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD---LI  324 (693)
T ss_dssp             SSSSCCEEEEEETTSTTC----CCEEEECSSSSC-EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE---EE
T ss_pred             cCCCCcEEEEEECCCCCC----ceEEEeCCCCce-EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE---Ee
Confidence               235899999977631    123334444433 333 566665554 44333   5788899887532 1121   22


Q ss_pred             ccceeEEEEEEcCcEEEEecC-CC--eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC----Ce
Q 018591          258 AHEMAVLCVCLVGEFLCSGSA-DK--SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD----KS  330 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d----g~  330 (353)
                      .+...+..++++++.|+.... ++  .|++|++..+. ...+ . ....+.+..+.++|+    ++.|+....+    +.
T Consensus       325 ~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l-~-~p~~~~~~~~~~~~d----~~~l~~~~ss~~tP~~  397 (693)
T 3iuj_A          325 PERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREV-A-LPGLGSVSGFNGKHD----DPALYFGFENYAQPPT  397 (693)
T ss_dssp             CCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEE-C-CSSSSEEEECCCCTT----CSCEEEEEECSSSCCE
T ss_pred             cCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEe-e-cCCCceEEeeecCCC----CCEEEEEecCCCCCCE
Confidence            222222288888887776654 43  68899987532 2222 1 123456777888887    5554444333    78


Q ss_pred             EEEEEcCCCC
Q 018591          331 LRVWWVSKQS  340 (353)
Q Consensus       331 i~iw~~~~~~  340 (353)
                      +..||+.+++
T Consensus       398 l~~~d~~~g~  407 (693)
T 3iuj_A          398 LYRFEPKSGA  407 (693)
T ss_dssp             EEEECTTTCC
T ss_pred             EEEEECCCCe
Confidence            9999987765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.05  E-value=5.9e-07  Score=69.23  Aligned_cols=204  Identities=11%  Similarity=0.033  Sum_probs=134.7

Q ss_pred             CCceeeeeeCccC--ceEEEEECC-cEEEEE-eC--CCcEEEEeCCCceeeEEeccCc-eeeEEEEEeCCEEEE-ecCCC
Q 018591            5 SHRSLAVLSGHVG--SVSSLALCG-EFILSA-SQ--GKDIIVWQQPDLRMFTKFGHGD-GSVKAVVTVGNKVFT-AHQDS   76 (353)
Q Consensus         5 ~~~~~~~l~~h~~--~v~~~~~~~-~~l~s~-~~--dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~s-~~~dg   76 (353)
                      +.+.+.++. |..  ....++|++ ..|+.+ +.  ++.|++.|+.+++.+..+.... .....+.+.++.|+. .-.++
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~   86 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCS
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCC
Confidence            456677775 443  368999973 445444 33  5799999999999998875322 223456777666554 45678


Q ss_pred             cEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcC
Q 018591           77 RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        77 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~  156 (353)
                      .+.++|..+.+     .+..++.                          + ...-..++...+.++++..++.|.++|..
T Consensus        87 ~v~viD~~t~~-----v~~~i~~--------------------------g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~  134 (266)
T 2iwa_A           87 IGFIYDRRTLS-----NIKNFTH--------------------------Q-MKDGWGLATDGKILYGSDGTSILYEIDPH  134 (266)
T ss_dssp             EEEEEETTTTE-----EEEEEEC--------------------------C-SSSCCEEEECSSSEEEECSSSEEEEECTT
T ss_pred             EEEEEECCCCc-----EEEEEEC--------------------------C-CCCeEEEEECCCEEEEECCCCeEEEEECC
Confidence            99999998765     3333322                          1 01113466666566666678999999999


Q ss_pred             Cceeeeecccc--C---cceEEEEEeCCeEEEEc-CCCcEEEEeCCCCCcccccceeeeecc------------CCceee
Q 018591          157 DLKCLESIKAH--D---DAVNGLVASKGIVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGH------------KDVSLN  218 (353)
Q Consensus       157 ~~~~~~~~~~~--~---~~v~~i~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~v~  218 (353)
                      +.+.+..+.-.  .   ..++.+.+.++.+++.. .++.|.+.|..+++     ....+...            .....+
T Consensus       135 t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~-----V~~~I~~~g~~~~~~~~~~~~~~v~n  209 (266)
T 2iwa_A          135 TFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGT-----LLGWILLPNLRKKLIDEGFRDIDVLN  209 (266)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCC-----EEEEEECHHHHHHHHHTTCTTCCCEE
T ss_pred             CCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCc-----EEEEEECCCcccccccccccccCceE
Confidence            98887776422  1   23667777666555554 57899999999987     44443321            112348


Q ss_pred             EEEEcCCCCe-EEeecCCCcEEEeecccc
Q 018591          219 SVVVSDDGKW-VYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       219 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~  246 (353)
                      .++++|+++. ++++...+.+...++...
T Consensus       210 GIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          210 GIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999765 555667788888887654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.05  E-value=6.6e-07  Score=68.97  Aligned_cols=200  Identities=11%  Similarity=0.006  Sum_probs=130.2

Q ss_pred             ceEEEEEeC-CeEEEecC---CCcEEEEEcCCceeeeeccccC-cceEEEEEeCCeE-EEEcCCCcEEEEeCCCCCcccc
Q 018591          130 SISCLTVYN-GLIYSGSW---DKTLKVWRVADLKCLESIKAHD-DAVNGLVASKGIV-YSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       130 ~i~~~~~~~-~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      ....+.+++ +.|+.++.   ++.|.++|+.+++.+..+.-.. .....+++.++.+ ++.-.++.+.++|..+.+    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~----   97 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS----   97 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE----
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc----
Confidence            357899998 66666543   5899999999999888864322 2234566666644 455568899999999887    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCe
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKS  281 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~  281 (353)
                       ....+.....   ....+++|++.++++..++.|.++|..+.+..........+.. .....+.+ ++...+....++.
T Consensus        98 -v~~~i~~g~~---~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~  173 (266)
T 2iwa_A           98 -NIKNFTHQMK---DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDC  173 (266)
T ss_dssp             -EEEEEECCSS---SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSE
T ss_pred             -EEEEEECCCC---CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCe
Confidence             4555543311   2344666888888777889999999988643322222111111 11233333 5655555557899


Q ss_pred             EEEEecCCCcceEEecc--cc------C--CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          282 IGIWKREAFGKLCRVGA--IT------G--HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~--~~------~--h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      |.+.|..+++....+..  +.      .  -....+.|+|+|+   +..+++++...+++.+-++.+..
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~---~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE---NKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT---TTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC---CCEEEEECCCCCeEEEEEEeccc
Confidence            99999999885433321  10      0  1135689999998   24677778788999999887654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=4.7e-06  Score=75.88  Aligned_cols=289  Identities=9%  Similarity=0.034  Sum_probs=169.8

Q ss_pred             CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEec-------cCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCc
Q 018591           17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFG-------HGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      ..|.++..+ ...|..|+.++-|..||..+++......       .....|.++..+ ...|..++.+ -+.+||..++.
T Consensus       163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~  241 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET  241 (781)
T ss_dssp             CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred             cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence            458888875 5566667777669999987765433211       113468888887 4556666665 58888876654


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeec--
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESI--  164 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~--  164 (353)
                      ...+......+                         .......|.++...+ +.+..|+..+-|.++|..+.+.....  
T Consensus       242 ~~~~~~~~~~~-------------------------~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~  296 (781)
T 3v9f_A          242 FTNFHNNPGNI-------------------------HGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQI  296 (781)
T ss_dssp             EEC------------------------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--------
T ss_pred             EEEEEcCCCcc-------------------------ccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecc
Confidence            11110000000                         001235688888877 78888888667889998765432211  


Q ss_pred             ------------cccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCccccccee---eeeccCCceeeEEEEcCCCCe
Q 018591          165 ------------KAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKG---ILEGHKDVSLNSVVVSDDGKW  228 (353)
Q Consensus       165 ------------~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~  228 (353)
                                  ......|.++.. .++.+..|+.++-|..++.............   ....-....|.++...+++. 
T Consensus       297 ~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-  375 (781)
T 3v9f_A          297 RFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-  375 (781)
T ss_dssp             -CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-
T ss_pred             ccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-
Confidence                        112457888888 5668889998888999998765411100000   00111223458888888776 


Q ss_pred             EEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE
Q 018591          229 VYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK  307 (353)
Q Consensus       229 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~  307 (353)
                      |..|+.++-+..|+..++..... ..........|.++..+ ...|..|+.++-+..++..+++ .............|.
T Consensus       376 lWigt~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~  453 (781)
T 3v9f_A          376 LWIGTDGGGINVFENGKRVAIYN-KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVR  453 (781)
T ss_dssp             EEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEE
T ss_pred             EEEEeCCCcEEEEECCCCeEEEc-cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEE
Confidence            55566555688898876521111 00112234567888776 4556667777779999987653 212211012345799


Q ss_pred             EEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          308 CLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       308 ~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      ++...++    +.+.+.. .+ -|..|+..+++
T Consensus       454 ~i~~d~~----g~lwigt-~~-Gl~~~~~~~~~  480 (781)
T 3v9f_A          454 VFYEDKN----KKIWIGT-HA-GVFVIDLASKK  480 (781)
T ss_dssp             EEEECTT----SEEEEEE-TT-EEEEEESSSSS
T ss_pred             EEEECCC----CCEEEEE-CC-ceEEEeCCCCe
Confidence            9988887    7655544 44 58888877654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.03  E-value=3.6e-07  Score=69.59  Aligned_cols=185  Identities=9%  Similarity=-0.014  Sum_probs=116.2

Q ss_pred             eEEEEEeC-CeEEEecCCC--cEEEEEcCCceeeeeccccCcc-eEEEEEeCCeEEE-EcCCCcEEEEeCCCCCcccccc
Q 018591          131 ISCLTVYN-GLIYSGSWDK--TLKVWRVADLKCLESIKAHDDA-VNGLVASKGIVYS-ASADGKIKAWGKELGKSHCHSL  205 (353)
Q Consensus       131 i~~~~~~~-~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~  205 (353)
                      ...+.|+. .++.+.+.+|  .|+.+|+.+++.+.++...... --.++..++.++. .-.++.+.+||..+.+     .
T Consensus        45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~-----~  119 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR-----Q  119 (262)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC-----E
T ss_pred             cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc-----E
Confidence            36777877 4455555555  8999999999998887543322 2346665665444 4458899999999987     5


Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCeEE
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKSIG  283 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~  283 (353)
                      ...+.....    ...++++++.|+.+..++.|.++|..+.+..........+.. ..+..+.+ +|...+..-.++.|.
T Consensus       120 ~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~  195 (262)
T 3nol_A          120 VRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIV  195 (262)
T ss_dssp             EEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred             EEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEE
Confidence            555554322    223345677777777788899999988743333222221111 12223444 566565555788999


Q ss_pred             EEecCCCcceEEecc--ccC-------CCcCeEEEEeecCCCCCCeEEEEccCC
Q 018591          284 IWKREAFGKLCRVGA--ITG-------HEGPVKCLQASPNAVGGGFLLYSGSLD  328 (353)
Q Consensus       284 iw~~~~~~~~~~~~~--~~~-------h~~~v~~~~~~~~~~~~~~~l~s~~~d  328 (353)
                      +.|..+++....+..  +..       -....+.|+|+|+    ++.|+..+..
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~----~~~lfVTGK~  245 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE----HHRLFVTGKL  245 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT----TTEEEEEETT
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC----CCEEEEECCC
Confidence            999999885433322  111       1235689999998    5555555543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.02  E-value=5e-08  Score=79.49  Aligned_cols=257  Identities=12%  Similarity=0.013  Sum_probs=153.0

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccCc-------eeeEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHGD-------GSVKAVV   63 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~-------~~v~~~~   63 (353)
                      ..+++.+.++.....+  .++++  +++++.+.          .++.|.+||..+++.+.++..+.       ..-..+.
T Consensus        53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia  130 (368)
T 1mda_H           53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence            4678888888766666  68885  77777775          36899999999999999986431       1234566


Q ss_pred             Ee--CCEEEEecC--CCcEEE--EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe
Q 018591           64 TV--GNKVFTAHQ--DSRIRV--WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY  137 (353)
Q Consensus        64 ~~--~~~l~s~~~--dg~i~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  137 (353)
                      ++  +++++.+..  +..+.+  +|..+     ...+   +.                          +.  .+ .+...
T Consensus       131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i---~v--------------------------~~--~~-~~~p~  173 (368)
T 1mda_H          131 NCASSACLLFFLFGSSAAAGLSVPGASD-----DQLT---KS--------------------------AS--CF-HIHPG  173 (368)
T ss_dssp             ECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEE---EC--------------------------SS--CC-CCEEE
T ss_pred             EcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEE---EC--------------------------CC--ce-EEccC
Confidence            65  778887764  456888  88766     1111   10                          00  00 01112


Q ss_pred             C-CeEEEecCCCcEEEEEcCC-----ceeee----eccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccce
Q 018591          138 N-GLIYSGSWDKTLKVWRVAD-----LKCLE----SIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       138 ~-~~l~~~~~dg~v~iwd~~~-----~~~~~----~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  206 (353)
                      . ..+++.+.||.+.+.|+.+     ++...    .+.-...+.   .. .++.++..+. +.+.+.|.......   ..
T Consensus       174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~---v~  246 (368)
T 1mda_H          174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGAT---MK  246 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCE---EE
T ss_pred             CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcce---EE
Confidence            2 4556677888888888876     44332    121122333   24 4456565566 89999998654311   11


Q ss_pred             eeeec-------cCCce--eeEEEEcCCCCeEEeecC---------CCcEEEeeccccccceeeeeecccc-ceeEEEEE
Q 018591          207 GILEG-------HKDVS--LNSVVVSDDGKWVYGGGS---------DGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVC  267 (353)
Q Consensus       207 ~~~~~-------~~~~~--v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~  267 (353)
                      ..+..       ....+  ...++++|+++.++++..         ++.+.++|+.+.+    ....+... ...-..++
T Consensus       247 ~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg~~p~gi~~s  322 (368)
T 1mda_H          247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPISNGHDSDAIIAA  322 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCEEEEEECEEEEC
T ss_pred             EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe----EEEEEECCCCcceEEEC
Confidence            11110       00000  123789999998886533         2356799999874    33333222 23345566


Q ss_pred             EcCc-EEEEec-CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          268 LVGE-FLCSGS-ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       268 ~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      ++++ ++++.. .++.|.++|+.+++   .+..+.... ....+++.+
T Consensus       323 ~Dg~~l~va~~~~~~~VsVID~~t~k---vv~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          323 QDGASDNYANSAGTEVLDIYDAASDQ---DQSSVELDK-GPESLSVQN  366 (368)
T ss_dssp             CSSSCEEEEEETTTTEEEEEESSSCE---EEEECCCCS-CCCEEECCC
T ss_pred             CCCCEEEEEccCCCCeEEEEECCCCc---EEEEEECCC-CCCEEEeec
Confidence            6776 556666 59999999999987   444444332 344555543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.00  E-value=6.4e-07  Score=78.06  Aligned_cols=64  Identities=11%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccCcee---------eEEEEEeCCEEEEecCCCcEEEEEcccCcc
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS---------VKAVVTVGNKVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      .+..++.++.++.|.-+|..+|+.+..+......         -..+...+..++.++.|+.|..+|.++++.
T Consensus        67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~  139 (582)
T 1flg_A           67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKV  139 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCE
T ss_pred             ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCE
Confidence            3555666666445999999999999887654221         123445688899999999999999998873

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.99  E-value=4.2e-06  Score=65.47  Aligned_cols=242  Identities=10%  Similarity=0.038  Sum_probs=137.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCCcee-----eEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeEEeecc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRM-----FTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFRLVDTL   97 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~~~~   97 (353)
                      |.+|+.+.. +.|+.+++.....     ...+.........++++  ++.|+ +-..++.|..++++.....  ...   
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~---   74 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TII---   74 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEE---
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEE---
Confidence            345555554 4788888765432     11222223456788887  45555 4455678999998654311  000   


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEE
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGL  174 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i  174 (353)
                                                 .........+++++  +.++ +-...+.|.+++++.................+
T Consensus        75 ---------------------------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i  127 (267)
T 1npe_A           75 ---------------------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI  127 (267)
T ss_dssp             ---------------------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             ---------------------------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEE
Confidence                                       01113456788876  4444 44556789999986432222222222456888


Q ss_pred             EEe--CCeEEEEcC---CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeecccccc
Q 018591          175 VAS--KGIVYSASA---DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIV  248 (353)
Q Consensus       175 ~~~--~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~  248 (353)
                      ++.  ++.++.+..   .+.|..+++....     ...........+ ..++++|++..| ++-...+.|..+|......
T Consensus       128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-----~~~~~~~~~~~P-~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  201 (267)
T 1npe_A          128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTN-----RRILAQDNLGLP-NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (267)
T ss_dssp             EEETTTTEEEEEECCSSSCEEEEEETTSCC-----CEEEECTTCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             EEeeCCCEEEEEECCCCCcEEEEEecCCCC-----cEEEEECCCCCC-cEEEEcCCCCEEEEEECCCCEEEEEecCCCce
Confidence            884  355555543   3688888876433     111111223345 899999987655 4555668899999876421


Q ss_pred             ceeeeeeccccceeEEEEEEcCcE-EEEecCCCeEEEEecCCCcceEEeccccCC-CcCeEEEEeecC
Q 018591          249 RWKLACETKAHEMAVLCVCLVGEF-LCSGSADKSIGIWKREAFGKLCRVGAITGH-EGPVKCLQASPN  314 (353)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~  314 (353)
                      . ...   .. ......+++++.. +++...++.|..+|..+++.   +..+... ......+++.|+
T Consensus       202 ~-~~~---~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~---~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          202 R-KVL---EG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKE---MDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             E-EEE---EC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEE---EEEECCSSCCCCCCEEEECS
T ss_pred             E-EEe---cC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCc---eEEEccccccccceeeecCc
Confidence            1 111   11 1122345555554 44555678999999988774   3333322 224677888887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.98  E-value=3.7e-08  Score=80.32  Aligned_cols=190  Identities=13%  Similarity=0.093  Sum_probs=118.0

Q ss_pred             ecCCceEEEEEeC-CeEEEecC------CCcEEEEEcCCceeeeecccc------CcceEEEEEe--CCeE-EEEc---C
Q 018591          126 EHADSISCLTVYN-GLIYSGSW------DKTLKVWRVADLKCLESIKAH------DDAVNGLVAS--KGIV-YSAS---A  186 (353)
Q Consensus       126 ~~~~~i~~~~~~~-~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~------~~~v~~i~~~--~~~l-~~~~---~  186 (353)
                      ++...+..+++++ +.|.....      ++.|.+||+.+++.+..+...      ...+..+++.  ++.+ ++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            4567889999998 65655543      578999999988876665422      2356888885  3444 4444   5


Q ss_pred             CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE
Q 018591          187 DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV  266 (353)
Q Consensus       187 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  266 (353)
                      ++.|.+||+.+++     ..+.+..|.........+.+++..+.+.+.++.+..|...                ..-.++
T Consensus       144 ~~~i~v~d~~~g~-----~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~----------------~~gia~  202 (343)
T 2qe8_A          144 KAALIRVDLQTGL-----AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG----------------VNGIVL  202 (343)
T ss_dssp             GCEEEEEETTTCC-----EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCC----------------EEEEEE
T ss_pred             CCeEEEEECCCCC-----EEEEecCCCcccccccceeECCEEEEeccCCCceeceecc----------------cceeEe
Confidence            7899999998776     4444444322110113445567677777777777655311                112456


Q ss_pred             EEcCcEEEEecCCC-eEEEEecCC---Cc--ceEEec--cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          267 CLVGEFLCSGSADK-SIGIWKREA---FG--KLCRVG--AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       267 ~~~~~~l~~~~~dg-~i~iw~~~~---~~--~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      +++++.|+.+..++ .+..++...   +.  ......  ...++.+....++++++    |.++++...++.|.+|+.++
T Consensus       203 s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~----G~l~va~~~~~~V~~~d~~~  278 (343)
T 2qe8_A          203 DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD----HNIYVGDLAHSAIGVITSAD  278 (343)
T ss_dssp             CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT----CCEEEEEGGGTEEEEEETTT
T ss_pred             ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC----CCEEEEccCCCeEEEEECCC
Confidence            66788777776655 555554321   00  000000  11133445678999999    99999999999999999844


Q ss_pred             CC
Q 018591          339 QS  340 (353)
Q Consensus       339 ~~  340 (353)
                      ++
T Consensus       279 G~  280 (343)
T 2qe8_A          279 RA  280 (343)
T ss_dssp             TE
T ss_pred             CC
Confidence            43

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.97  E-value=7.9e-07  Score=73.17  Aligned_cols=170  Identities=10%  Similarity=-0.009  Sum_probs=105.9

Q ss_pred             CcEEEEEcCCceeeeeccccCc---ceEEEEEeC--CeEEEEc-------------------CCCcEEEEeCCCCCcccc
Q 018591          148 KTLKVWRVADLKCLESIKAHDD---AVNGLVASK--GIVYSAS-------------------ADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~---~v~~i~~~~--~~l~~~~-------------------~dg~i~iwd~~~~~~~~~  203 (353)
                      |.|.++|..+++.+.++.....   .-+.+.|++  +.+++..                   .+.+|.+||+.+++    
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k----  239 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK----  239 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----
Confidence            7899999999999988863322   233466643  3666663                   37899999999865    


Q ss_pred             cceeeeecc-CCceeeEEEE--cCCCCeEEeec------CCCcEEEeeccccccceeeee---------ec---c-----
Q 018591          204 SLKGILEGH-KDVSLNSVVV--SDDGKWVYGGG------SDGFVMGWEGNVEIVRWKLAC---------ET---K-----  257 (353)
Q Consensus       204 ~~~~~~~~~-~~~~v~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~---------~~---~-----  257 (353)
                       ....+... .+.....+.|  +|+++++++++      .+++|.+|....+........         .+   .     
T Consensus       240 -~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~  318 (462)
T 2ece_A          240 -RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA  318 (462)
T ss_dssp             -EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred             -EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence             44444442 2222255656  99999988877      456887766554321111100         00   0     


Q ss_pred             -ccceeEEEEEEcCcEEEEec-CCCeEEEEecCCCcceEEeccccCC--------------CcCeEEEEeecCCCCCCeE
Q 018591          258 -AHEMAVLCVCLVGEFLCSGS-ADKSIGIWKREAFGKLCRVGAITGH--------------EGPVKCLQASPNAVGGGFL  321 (353)
Q Consensus       258 -~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~h--------------~~~v~~~~~~~~~~~~~~~  321 (353)
                       +....-..++++|++|.++. ..+.|.+||+.....+..+..+.-.              .+.-..++++||    |++
T Consensus       319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD----Gk~  394 (462)
T 2ece_A          319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD----GRR  394 (462)
T ss_dssp             ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT----SSE
T ss_pred             CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC----CCE
Confidence             11223355777888887765 4789999999754444444433221              013688999999    988


Q ss_pred             EEEcc
Q 018591          322 LYSGS  326 (353)
Q Consensus       322 l~s~~  326 (353)
                      |+++.
T Consensus       395 LyVaN  399 (462)
T 2ece_A          395 VYVTN  399 (462)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88887

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.93  E-value=2.5e-06  Score=64.43  Aligned_cols=186  Identities=8%  Similarity=-0.001  Sum_probs=116.3

Q ss_pred             CceEEEEEeCCeE-EEecCC--CcEEEEEcCCceeeeeccccCcc-eEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccc
Q 018591          129 DSISCLTVYNGLI-YSGSWD--KTLKVWRVADLKCLESIKAHDDA-VNGLVASKG-IVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       129 ~~i~~~~~~~~~l-~~~~~d--g~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      .-...+.|+++.| .+.+.+  ..|+.+|+.+++.+..+...... --.++..++ .....-.++.+.+||..+.+    
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~----   96 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLT----   96 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTE----
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCc----
Confidence            3466889988544 444554  48999999999998887543322 134556555 44455568999999999887    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCe
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKS  281 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~  281 (353)
                       ....+..... . ..++  ++++.|+.+..++.|.++|..+.+..........+.. ..+..+.+ +|+..+..-.+..
T Consensus        97 -~~~ti~~~~~-G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~  171 (243)
T 3mbr_X           97 -PRARFRYPGE-G-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR  171 (243)
T ss_dssp             -EEEEEECSSC-C-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred             -EEEEEeCCCC-c-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence             5555554332 2 3444  5677777777789999999988743333222211111 23344555 4665555556889


Q ss_pred             EEEEecCCCcceEEecc--cc--------CCCcCeEEEEeecCCCCCCeEEEEccC
Q 018591          282 IGIWKREAFGKLCRVGA--IT--------GHEGPVKCLQASPNAVGGGFLLYSGSL  327 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~--~~--------~h~~~v~~~~~~~~~~~~~~~l~s~~~  327 (353)
                      |.+.|..+++....+..  +.        .-....+.|+++|+    ++.|+..+.
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~----~~~lfVTGK  223 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE----HDRLFVTGK  223 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT----TTEEEEEET
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC----CCEEEEECC
Confidence            99999999874433321  11        11235789999998    444444443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.92  E-value=1e-06  Score=67.10  Aligned_cols=182  Identities=9%  Similarity=0.020  Sum_probs=117.0

Q ss_pred             eEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcc-eEEEEEeCC-eEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          131 ISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA-VNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       131 i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      ...+.|+. .++.+.+.+|.|+.+|+.+++.+..+ -.... -..++..++ ..++.-.++.+.+||..+.+     ...
T Consensus        57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~-----~~~  130 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ-----RER  130 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE-----EEE
T ss_pred             cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc-----EEE
Confidence            46788888 66677788889999999999988777 32221 234666555 44555568999999999987     555


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccc-eeEEEEEE-cCcEEEEecCCCeEEEE
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCL-VGEFLCSGSADKSIGIW  285 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~~~~~dg~i~iw  285 (353)
                      .+..... . ..++  ++++.|+.+..++.|.++|..+.+..........+.. ..+..+.+ +|...+....++.|.+.
T Consensus       131 ti~~~~e-G-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          131 TTRYSGE-G-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EEECSSC-C-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEE
T ss_pred             EEeCCCc-e-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEE
Confidence            5554322 2 3344  5678888887899999999988743333222221111 12344455 56655555578899999


Q ss_pred             ecCCCcceEEecc--cc--------CCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          286 KREAFGKLCRVGA--IT--------GHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       286 ~~~~~~~~~~~~~--~~--------~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      |.++++....+..  +.        .-....+.|+++|+   .+.+++||
T Consensus       207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~---~~rlfVTG  253 (268)
T 3nok_A          207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG---SGRIFMTG  253 (268)
T ss_dssp             CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT---TCCEEEEE
T ss_pred             eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC---CCEEEEeC
Confidence            9999874433321  11        11235789999998   13455554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.89  E-value=6.5e-06  Score=73.27  Aligned_cols=263  Identities=13%  Similarity=0.053  Sum_probs=136.5

Q ss_pred             CCcEEEEEeCCC-----------cEEEEeCCCceee--EEecc-CceeeEEEEE--eCCEEEEecC-CCcEEEEEcccCc
Q 018591           25 CGEFILSASQGK-----------DIIVWQQPDLRMF--TKFGH-GDGSVKAVVT--VGNKVFTAHQ-DSRIRVWKVSRSS   87 (353)
Q Consensus        25 ~~~~l~s~~~dg-----------~v~vwd~~~~~~~--~~~~~-~~~~v~~~~~--~~~~l~s~~~-dg~i~~w~~~~~~   87 (353)
                      ++++++.|+.+.           .+.+||..+++-.  ..... +.....++++  ++..++.|+. ++.+.+||..+..
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            578888887643           5889998876532  22322 2222333444  3777788874 4589999988764


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE-eCCeEEEec-CC-----CcEEEEEcCCcee
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV-YNGLIYSGS-WD-----KTLKVWRVADLKC  160 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~-~d-----g~v~iwd~~~~~~  160 (353)
                         +..+..++.                           ....-.+... ....++.|+ .+     ..+.+||..+.+-
T Consensus       277 ---W~~~~~~~~---------------------------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          277 ---WIPGPDMQV---------------------------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             ---EEECCCCSS---------------------------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ---eeECCCCCc---------------------------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence               222222221                           1111122233 236777777 34     5799999987653


Q ss_pred             eee-----ccccCcceEEEE-EeCCeEEEEcC---------CCcEEEEeCCCCCcccccceeeeec------cCCceeeE
Q 018591          161 LES-----IKAHDDAVNGLV-ASKGIVYSASA---------DGKIKAWGKELGKSHCHSLKGILEG------HKDVSLNS  219 (353)
Q Consensus       161 ~~~-----~~~~~~~v~~i~-~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~  219 (353)
                      ...     .......-.++. ..+..++.++.         ...+..||..+....  ........      ..... .+
T Consensus       327 ~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~~~~~~~~~~~~~~~~~~~-~a  403 (656)
T 1k3i_A          327 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--KSAGKRQSNRGVAPDAMCG-NA  403 (656)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--EEEEECEETTEECCCCBTC-EE
T ss_pred             eeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee--ecCCccccccccCCCCCCC-ce
Confidence            322     000000000011 02223333333         345778888766511  11111110      01111 34


Q ss_pred             EEEcC-CCCeEEeecCCC-----------cEEEeeccccccceeeee--eccccceeEE-EEEEcCcEEEEecCC-----
Q 018591          220 VVVSD-DGKWVYGGGSDG-----------FVMGWEGNVEIVRWKLAC--ETKAHEMAVL-CVCLVGEFLCSGSAD-----  279 (353)
Q Consensus       220 ~~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~--~~~~~~~~v~-~~~~~~~~l~~~~~d-----  279 (353)
                      +.+.. ++++++.|+.++           .+.+||..+..  +....  .+........ .+.+++++++.|+.+     
T Consensus       404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            44543 677888887532           57788877653  22221  2222222223 334489999998854     


Q ss_pred             ------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC
Q 018591          280 ------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL  327 (353)
Q Consensus       280 ------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~  327 (353)
                            ..+.+||..+. ....+..+........+..+.|+    +++++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~-~W~~~~~~~~~R~~hs~a~ll~d----g~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQD-TFYKQNPNSIVRVYHSISLLLPD----GRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGT-EEEECCCCSSCCCTTEEEEECTT----SCEEEEECC
T ss_pred             CCCCcccceEEEcCCCC-ceeecCCCCCccccccHhhcCCC----cEEEecCCC
Confidence                  46899998764 33333333322233344556788    999999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.88  E-value=6.4e-06  Score=64.44  Aligned_cols=200  Identities=8%  Similarity=-0.011  Sum_probs=117.3

Q ss_pred             ceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCe-EEEEcCCCcEEEEeCCCCCcccc
Q 018591          130 SISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGI-VYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       130 ~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~-l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      ....+++++  +.|+ +-..++.|..++.........+.........+++.  .+. +++-...+.|.++++....    
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~----  112 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----  112 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----
Confidence            467888887  4444 44557899999987654433332223467888884  344 4455567889999987543    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecC---CCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEEecCC
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGS---DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCSGSAD  279 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d  279 (353)
                       ...........+ ..++++|++..|+.+..   .+.|..+++.....  ............-.++.+++. ++++-...
T Consensus       113 -~~~~~~~~~~~P-~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~~~~~~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          113 -RRVLFDTGLVNP-RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQDNLGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             -CEEEECSSCSSE-EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred             -EEEEEECCCCCc-cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence             112222222345 89999997665555443   36788888764321  111111111223344555554 44556667


Q ss_pred             CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +.|..+|....... .+  ..+ ......++.. .    +.++++...++.|.+++..+++.+....
T Consensus       189 ~~I~~~~~~g~~~~-~~--~~~-~~~P~gi~~d-~----~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          189 HRAECLNPAQPGRR-KV--LEG-LQYPFAVTSY-G----KNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TEEEEEETTEEEEE-EE--EEC-CCSEEEEEEE-T----TEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEecCCCceE-EE--ecC-CCCceEEEEe-C----CEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            89999998754321 11  122 2234566654 3    5666666667899999998887665543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.83  E-value=2.2e-06  Score=73.07  Aligned_cols=142  Identities=13%  Similarity=-0.042  Sum_probs=82.4

Q ss_pred             cEEEEeCCC--CCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeecccccc--------ceeeeeecc
Q 018591          189 KIKAWGKEL--GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIV--------RWKLACETK  257 (353)
Q Consensus       189 ~i~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--------~~~~~~~~~  257 (353)
                      .|.+.|.++  ++    .....+.... .+ .++.++|||+++++++ .+..|.++|+.+.+.        .........
T Consensus       255 ~V~VID~~~~~~~----~~~~~Ipvg~-~P-hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          255 GVKVVDGRKEASS----LFTRYIPIAN-NP-HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             TEEEEECSGGGCC----SSEEEEEEES-SC-CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             cEEEEeCcccCCc----eeEEEEecCC-Cc-eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            467777765  22    1122332222 23 7899999999876654 678999999986521        011122222


Q ss_pred             -ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc-------ceEEeccccCCCcC-----eEEEEeecCCCCCCeEEEE
Q 018591          258 -AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG-------KLCRVGAITGHEGP-----VKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       258 -~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~l~s  324 (353)
                       +....-+.++++|...++...|+.|.+||+....       ....+..+..|-.+     -..+.++||    |++|++
T Consensus       329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D----Gk~l~~  404 (595)
T 1fwx_A          329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT----NDWLVC  404 (595)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC----SSEEEE
T ss_pred             CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCC----CCEEEE
Confidence             2223335566678555677789999999987621       12244444444332     123356788    999988


Q ss_pred             ccC---CCe----------EEEEEcCCCC
Q 018591          325 GSL---DKS----------LRVWWVSKQS  340 (353)
Q Consensus       325 ~~~---dg~----------i~iw~~~~~~  340 (353)
                      +..   |..          -.++|++.++
T Consensus       405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          405 LSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            743   442          1778885443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.82  E-value=9.6e-06  Score=65.37  Aligned_cols=253  Identities=12%  Similarity=0.026  Sum_probs=133.3

Q ss_pred             eEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591           59 VKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV  136 (353)
Q Consensus        59 v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  136 (353)
                      ..+++++  ++.++++..++.|..|+.+++....+...........      ....       ..............+++
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~g~-------~~~~~~~~~~~p~gi~~   87 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAF------CENS-------TDAEKRPLCGRTYDISY   87 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHH------HTTC-------CCGGGHHHHCCEEEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccc------cccc-------cchhccccCCCCceEEE
Confidence            3456666  5568888888899999876544211111000000000      0000       00000011234678888


Q ss_pred             eC--CeEEEecCCCcEEEEEcCCceeeeec---cc-cCcceEEEEE-e-CCeEEEEcC------------------CCcE
Q 018591          137 YN--GLIYSGSWDKTLKVWRVADLKCLESI---KA-HDDAVNGLVA-S-KGIVYSASA------------------DGKI  190 (353)
Q Consensus       137 ~~--~~l~~~~~dg~v~iwd~~~~~~~~~~---~~-~~~~v~~i~~-~-~~~l~~~~~------------------dg~i  190 (353)
                      .+  +.|+++...+.|..+|..+++.....   .+ .......+++ + ++.++.+..                  ++.|
T Consensus        88 ~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           88 NLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             ETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             cCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence            85  67777766666888887655322111   11 1234677888 4 455554432                  3678


Q ss_pred             EEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeecccccc-ceeeeeeccccceeEEEEEE
Q 018591          191 KAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIV-RWKLACETKAHEMAVLCVCL  268 (353)
Q Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~  268 (353)
                      ..||..+++     ..... .....+ ..++++|+++.|+.+ ...+.|..|++..... .........+  ..-.++..
T Consensus       168 ~~~d~~~~~-----~~~~~-~~~~~p-~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~  238 (322)
T 2fp8_A          168 IKYDPSTKE-----TTLLL-KELHVP-GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNA  238 (322)
T ss_dssp             EEEETTTTE-----EEEEE-EEESCC-CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECT
T ss_pred             EEEeCCCCE-----EEEec-cCCccC-cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECC
Confidence            888876654     21111 112233 789999999866555 5668899999875321 1111112222  12234444


Q ss_pred             cCcEEEEecC----------CCeEEEEecCCCcceEEeccccCC-CcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          269 VGEFLCSGSA----------DKSIGIWKREAFGKLCRVGAITGH-EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       269 ~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +|++.++...          .+.|..+|.. ++....+....+. -..++.+++ .+    ++++++...++.|..+++.
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~----g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HD----GLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ET----TEEEEECSSCSEEEEEEC-
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eC----CEEEEeecCCCceEEEecc
Confidence            5776665544          4678888864 4433222221111 234667766 34    7777887788899999876


Q ss_pred             CC
Q 018591          338 KQ  339 (353)
Q Consensus       338 ~~  339 (353)
                      ..
T Consensus       313 ~~  314 (322)
T 2fp8_A          313 KK  314 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.82  E-value=1.2e-06  Score=72.20  Aligned_cols=187  Identities=14%  Similarity=0.012  Sum_probs=117.1

Q ss_pred             CeEEEecCCCcEEEEEcCCc----eeeeecc------cc-CcceEEEEE-eCCeEEEEcCC------CcEEEEeCCCCCc
Q 018591          139 GLIYSGSWDKTLKVWRVADL----KCLESIK------AH-DDAVNGLVA-SKGIVYSASAD------GKIKAWGKELGKS  200 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~----~~~~~~~------~~-~~~v~~i~~-~~~~l~~~~~d------g~i~iwd~~~~~~  200 (353)
                      .+++.+-.++.|.++|+.+.    +..+.++      .. ......+.. +++.++++..+      |.|.++|.++.+ 
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~-  175 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFE-  175 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCC-
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCe-
Confidence            45666778899999998754    5555553      11 113344555 55566666555      789999999887 


Q ss_pred             ccccceeeeeccCC--ceeeEEEEcCCCCeEEeec-------------------CCCcEEEeeccccccceeeeeecccc
Q 018591          201 HCHSLKGILEGHKD--VSLNSVVVSDDGKWVYGGG-------------------SDGFVMGWEGNVEIVRWKLACETKAH  259 (353)
Q Consensus       201 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~~~~  259 (353)
                          +...+.....  ..-..+.|+|+++.+++..                   .+.+|.+||+.+++    ....+...
T Consensus       176 ----v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k----~~~tI~vg  247 (462)
T 2ece_A          176 ----PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK----RIHSLTLG  247 (462)
T ss_dssp             ----EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE----EEEEEESC
T ss_pred             ----EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc----EeeEEecC
Confidence                5655553221  1124588899999888884                   36899999998763    22222221


Q ss_pred             --ceeEEE--E--EEcCcEEEEec------CCCeEEEEecCCCcceEEeccc--cC----------------CCcCeEEE
Q 018591          260 --EMAVLC--V--CLVGEFLCSGS------ADKSIGIWKREAFGKLCRVGAI--TG----------------HEGPVKCL  309 (353)
Q Consensus       260 --~~~v~~--~--~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~--~~----------------h~~~v~~~  309 (353)
                        ......  +  ++++++++++.      .+++|.+|..+.+ .......+  ..                -......|
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence              122222  3  45577776665      5678887776543 22111111  00                02457889


Q ss_pred             EeecCCCCCCeEEEEccC-CCeEEEEEcCCC
Q 018591          310 QASPNAVGGGFLLYSGSL-DKSLRVWWVSKQ  339 (353)
Q Consensus       310 ~~~~~~~~~~~~l~s~~~-dg~i~iw~~~~~  339 (353)
                      .++||    +++|.++.. .+.|.+||+...
T Consensus       327 ~lS~D----GrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          327 DISLD----DKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EECTT----SCEEEEEETTTTEEEEEECSST
T ss_pred             EECCC----CCEEEEEeCCCCEEEEEEecCC
Confidence            99999    887777654 689999999744

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.53  E-value=0.00026  Score=58.53  Aligned_cols=233  Identities=14%  Similarity=0.044  Sum_probs=129.5

Q ss_pred             eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeEEe
Q 018591           19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      -+|.+.+ ..+|+.+. ...|+..++........... ......++|+  ++.|+ +-...+.|..++++......  .+
T Consensus        79 ~~C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~  154 (386)
T 3v65_B           79 RSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VV  154 (386)
T ss_dssp             SCEEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EE
T ss_pred             CeECCccccceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EE
Confidence            3455544 33444443 35788899876665544443 3457788887  44554 44566788888887653111  10


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCcce
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDDAV  171 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v  171 (353)
                      .                              ........+++.+  + ++++-...+.|.+.++........+...-...
T Consensus       155 ~------------------------------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P  204 (386)
T 3v65_B          155 S------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP  204 (386)
T ss_dssp             C------------------------------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCE
T ss_pred             e------------------------------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCC
Confidence            0                              0111223456654  3 44455556788888876433333333333556


Q ss_pred             EEEEEe--CCeEE-EEcCC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeecccc
Q 018591          172 NGLVAS--KGIVY-SASAD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVE  246 (353)
Q Consensus       172 ~~i~~~--~~~l~-~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~  246 (353)
                      ..+++.  .+.|+ +-... +.|..+++....     ...........+ ..++++|++..|+ +-...+.|..+++...
T Consensus       205 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-----~~~~~~~~~~~P-nGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          205 RAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----RRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----CEEEECSSCSCE-EEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-----cEEEEECCCCCe-eeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            888884  34444 44444 678888876543     222222233345 8999998665555 4455678999998754


Q ss_pred             ccceeeeeeccccceeEEEEE-EcCcEEEEecCCCeEEEEecCCCcceEE
Q 018591          247 IVRWKLACETKAHEMAVLCVC-LVGEFLCSGSADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       247 ~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~  295 (353)
                      .. .........+   ...++ ..+.++++-...+.|..++..+++....
T Consensus       279 ~~-~~~~~~~~~~---P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          279 HR-KAVISQGLPH---PFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             SC-EEEECSSCSS---EEEEEEETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             ee-EEEEECCCCC---ceEEEEECCEEEEeeCCCCeEEEEECCCCcceEE
Confidence            21 1121111112   23333 3466667777788999998666664333

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.52  E-value=0.00021  Score=57.46  Aligned_cols=241  Identities=12%  Similarity=0.064  Sum_probs=129.6

Q ss_pred             eeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEecc--------------------CceeeEEEEEe--CC
Q 018591           12 LSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGH--------------------GDGSVKAVVTV--GN   67 (353)
Q Consensus        12 l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~--~~   67 (353)
                      +.+.-....+++++  +++++++..++.|..||..+++.. .+..                    .......++++  +.
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            44433456778886  676888888999999998765443 2210                    01246778887  46


Q ss_pred             EEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec
Q 018591           68 KVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS  145 (353)
Q Consensus        68 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~  145 (353)
                      .|+.+...+.|..+|.+++..   ..+......                         ........+++.+  ..+..+.
T Consensus        93 ~l~v~d~~~~i~~~d~~~g~~---~~~~~~~~~-------------------------~~~~~p~~i~~d~~~G~l~v~d  144 (322)
T 2fp8_A           93 QLYIVDCYYHLSVVGSEGGHA---TQLATSVDG-------------------------VPFKWLYAVTVDQRTGIVYFTD  144 (322)
T ss_dssp             EEEEEETTTEEEEECTTCEEC---EEEESEETT-------------------------EECSCEEEEEECTTTCCEEEEE
T ss_pred             cEEEEECCCCEEEEeCCCCEE---EEecccCCC-------------------------CcccccceEEEecCCCEEEEEC
Confidence            677775555577777654321   111100000                         0112244556654  2333332


Q ss_pred             ------------------CCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEE-EEcCCCcEEEEeCCCCCccccc
Q 018591          146 ------------------WDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVY-SASADGKIKAWGKELGKSHCHS  204 (353)
Q Consensus       146 ------------------~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~  204 (353)
                                        .++.|..+|..+++....... ......+++++  +.++ +-...+.|..|++.......  
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~--  221 (322)
T 2fp8_A          145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT--  221 (322)
T ss_dssp             SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC--
T ss_pred             CcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc--
Confidence                              236788888766654332221 23346788843  3454 44667899999987532111  


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeecC----------CCcEEEeeccccccceeeeeecccc-ceeEEEEEE-cCcE
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGS----------DGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCL-VGEF  272 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~  272 (353)
                       ...+..... + ..+++.++|++.++...          .+.|..+|.... ..... ....+. ...+..+.. ++++
T Consensus       222 -~~~~~~~~g-P-~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~-~~~~~-~~~~g~~~~~~~~~~~~~g~L  296 (322)
T 2fp8_A          222 -AEVLVKIPN-P-GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN-ILEVI-PLPPPFAGEHFEQIQEHDGLL  296 (322)
T ss_dssp             -EEEEEECSS-E-EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC-EEEEE-ECCTTTTTSCCCEEEEETTEE
T ss_pred             -cceEEeCCC-C-CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCC-EEEEE-ECCCCCccccceEEEEeCCEE
Confidence             111111122 4 88999999986666544          466888886532 11111 111110 122333333 4666


Q ss_pred             EEEecCCCeEEEEecCC
Q 018591          273 LCSGSADKSIGIWKREA  289 (353)
Q Consensus       273 l~~~~~dg~i~iw~~~~  289 (353)
                      +++...++.|..+++..
T Consensus       297 ~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          297 YIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEECSSCSEEEEEEC--
T ss_pred             EEeecCCCceEEEeccc
Confidence            66666788899998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.51  E-value=3.7e-05  Score=65.72  Aligned_cols=187  Identities=12%  Similarity=0.108  Sum_probs=117.4

Q ss_pred             CeEE-EecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-e-C--CeEEEEc------------------CCCcEEEEe
Q 018591          139 GLIY-SGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-S-K--GIVYSAS------------------ADGKIKAWG  194 (353)
Q Consensus       139 ~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~-~--~~l~~~~------------------~dg~i~iwd  194 (353)
                      ++++ ....++.|.+.|+.+.++...+.-. ......+++ . +  +++++++                  .++.+.+.|
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID  181 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD  181 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence            4444 4455677999999999988844322 345677776 3 3  3666663                  346789999


Q ss_pred             CCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--------------------------------------
Q 018591          195 KELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--------------------------------------  236 (353)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------  236 (353)
                      ..+.+     ....+.-.. .+ ..++++|+|+++++.+.+.                                      
T Consensus       182 ~~t~~-----v~~qI~Vgg-~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          182 ADKWE-----VAWQVLVSG-NL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             TTTTE-----EEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             CCCCe-----EEEEEEeCC-Cc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            98776     444443322 23 6788999999998887553                                      


Q ss_pred             cEEEeeccccccceeeeeec-cccceeEEEEEEcCcEEEEe-cCCCeEEEEecCCCcce---------EEeccccCCCcC
Q 018591          237 FVMGWEGNVEIVRWKLACET-KAHEMAVLCVCLVGEFLCSG-SADKSIGIWKREAFGKL---------CRVGAITGHEGP  305 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~---------~~~~~~~~h~~~  305 (353)
                      .|.+.|..+.... ...... .+....-..++|||++++++ ..+.+|.++|+.+.+..         ....... -...
T Consensus       255 ~V~VID~~~~~~~-~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g  332 (595)
T 1fwx_A          255 GVKVVDGRKEASS-LFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG  332 (595)
T ss_dssp             TEEEEECSGGGCC-SSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred             cEEEEeCcccCCc-eeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence            2444455441000 001111 11223336677888866655 47899999999864210         0122222 1245


Q ss_pred             eEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      ...++|+|+    |...++.-.|+.|.+|++++
T Consensus       333 P~h~aF~~d----G~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          333 PLHTAFDGR----GNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEEECTT----SEEEEEETTTTEEEEEEHHH
T ss_pred             cceEEECCC----CeEEEEEecCCcEEEEEhhH
Confidence            789999999    86677788899999999876

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.48  E-value=0.00035  Score=57.70  Aligned_cols=199  Identities=11%  Similarity=0.024  Sum_probs=116.4

Q ss_pred             CceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591          129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      .....++|++  +.|+ +-...+.|..+++........+.........+++.  .+ ++++-...+.|.+.++....   
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---  192 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---  192 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---
Confidence            4567889986  4444 44567889999987654333332222334566663  34 55666667889988887543   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeec-CC-CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCC
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SD-GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSAD  279 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d  279 (353)
                        ...........+ ..++++|.+..|+... .. +.|..+++...... .+. ........-.+++++ +.+.++-...
T Consensus       193 --~~~l~~~~l~~P-~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          193 --RKVLLWQSLEKP-RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA-DTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             --CEEEECSSCSCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE-CSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             --eEEeecCCCCCC-cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEE-ECCCCCeeeEEEeCCCCEEEEEECCC
Confidence              222233333445 8999998766555443 34 67888887654211 111 111112233455544 4555566677


Q ss_pred             CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      +.|..+++...... .+  +.........|++. .    +.++++-...+.|..++..+++...
T Consensus       268 ~~I~~~d~dG~~~~-~~--~~~~~~~P~giav~-~----~~ly~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          268 HVIERANLDGSHRK-AV--ISQGLPHPFAITVF-E----DSLYWTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             TEEEEECTTSCSCE-EE--ECSSCSSEEEEEEE-T----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CEEEEEeCCCCeeE-EE--EECCCCCceEEEEE-C----CEEEEeeCCCCeEEEEECCCCcceE
Confidence            89999998754322 22  22223456778883 3    5677777778889888866665443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.47  E-value=0.00031  Score=56.63  Aligned_cols=272  Identities=8%  Similarity=0.013  Sum_probs=136.3

Q ss_pred             cCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec----cCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccc
Q 018591           16 VGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG----HGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSEN   89 (353)
Q Consensus        16 ~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~   89 (353)
                      ...+.+|.|.  +..++ ++.+|.|. .....++.-....    .....+.++.++++.++.++.+|.|.. ..+.++  
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~--  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQ--  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTS--
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCC--
Confidence            4579999994  44555 55677653 3334444333332    124468888888666666666664432 222222  


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeee-ecccc
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLE-SIKAH  167 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~  167 (353)
                      ....+....                           .+...+..+.+.+ +.++.++.+|.|..-+ +.++.-. .....
T Consensus       110 tW~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~-DgG~tW~~~~~~~  161 (327)
T 2xbg_A          110 SWSQIPLDP---------------------------KLPGSPRLIKALGNGSAEMITNVGAIYRTK-DSGKNWQALVQEA  161 (327)
T ss_dssp             SCEECCCCT---------------------------TCSSCEEEEEEEETTEEEEEETTCCEEEES-STTSSEEEEECSC
T ss_pred             CceECcccc---------------------------CCCCCeEEEEEECCCCEEEEeCCccEEEEc-CCCCCCEEeecCC
Confidence            111111100                           1122345555544 4455555566543321 2222111 11234


Q ss_pred             CcceEEEEE-eCCeEEEEcCCCcEEEE-eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591          168 DDAVNGLVA-SKGIVYSASADGKIKAW-GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       168 ~~~v~~i~~-~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                      ...+..+.+ +++.++..+.+|.+..- |-. +.     .-..........+..+++.+++..++. +.+|.+++.+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~-----tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~  234 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT-----AWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN  234 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS-----SCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC-----ceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCC
Confidence            557888888 45555555556655443 321 22     111111112223478889998876544 4577777664222


Q ss_pred             cccceeeeeec-cccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591          246 EIVRWKLACET-KAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL  322 (353)
Q Consensus       246 ~~~~~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l  322 (353)
                      + ..+...... ......+.++.+.  +.+++++ .+|.+ ++..+.++....+.....+...+.++.|.++    +. +
T Consensus       235 G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~----~~-~  306 (327)
T 2xbg_A          235 S-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP----DQ-G  306 (327)
T ss_dssp             E-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET----TE-E
T ss_pred             C-CeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC----Cc-e
Confidence            2 122221111 0112235666554  4555554 46766 4555556655555433334456888999765    55 5


Q ss_pred             EEccCCCeEEEEE
Q 018591          323 YSGSLDKSLRVWW  335 (353)
Q Consensus       323 ~s~~~dg~i~iw~  335 (353)
                      +.++.+|.|.-++
T Consensus       307 ~~~G~~G~i~~~~  319 (327)
T 2xbg_A          307 FILGQKGILLRYV  319 (327)
T ss_dssp             EEECSTTEEEEEC
T ss_pred             EEEcCCceEEEEc
Confidence            5666788776654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.46  E-value=0.00035  Score=56.80  Aligned_cols=234  Identities=15%  Similarity=0.056  Sum_probs=130.6

Q ss_pred             CceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCccceeE
Q 018591           17 GSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        17 ~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      +..+|.+.. ..+|+.+. ...|+..++........+.. .....+++|+  ++.|+ +-...+.|..++++......  
T Consensus        34 d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--  109 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--  109 (349)
T ss_dssp             TSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--
T ss_pred             CCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE--
Confidence            445666654 33444443 35688888876555444443 3457788887  45555 44566788888887654111  


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDD  169 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  169 (353)
                      .+.                              ........+++.+  + ++++-...+.|.+.+++.......+...-.
T Consensus       110 ~~~------------------------------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~  159 (349)
T 3v64_C          110 VVS------------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE  159 (349)
T ss_dssp             EEC------------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCS
T ss_pred             EEe------------------------------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCC
Confidence            100                              1112234566664  3 445555667899999864433333333335


Q ss_pred             ceEEEEEe--CCe-EEEEcCC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeecc
Q 018591          170 AVNGLVAS--KGI-VYSASAD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGN  244 (353)
Q Consensus       170 ~v~~i~~~--~~~-l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~  244 (353)
                      ....+++.  .+. +++-... +.|..+++....     ...........+ ..++++|++..|+. -...+.|..+++.
T Consensus       160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-----~~~~~~~~~~~P-nGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----RRIIADTHLFWP-NGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----CEESCCSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-----cEEEEECCCCCc-ceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            56888885  344 4444444 778888877543     222222223345 89999986665554 4556789999987


Q ss_pred             ccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcce
Q 018591          245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                      ..... ........+... .++ ..+.++++-...+.|..++..+++..
T Consensus       234 G~~~~-~~~~~~~~~P~g-iav-~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          234 GSHRK-AVISQGLPHPFA-ITV-FEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             SCSCE-EEECSSCSSEEE-EEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CCceE-EEEeCCCCCceE-EEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence            54211 111111122222 222 34666667677888988886666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.43  E-value=0.00036  Score=55.48  Aligned_cols=232  Identities=13%  Similarity=0.114  Sum_probs=119.0

Q ss_pred             ECCcEEEEEe-CC-----CcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecCC-----CcEEEEEcccCccce
Q 018591           24 LCGEFILSAS-QG-----KDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQD-----SRIRVWKVSRSSENV   90 (353)
Q Consensus        24 ~~~~~l~s~~-~d-----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~~w~~~~~~~~~   90 (353)
                      +++.+++.|+ .+     ..+.++|..+.+-...  +........++...+..++.|+.+     ..+.+||+.+.....
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            4466777777 33     4788999877653321  121112222233346666667654     368888887665222


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCC-----CcEEEEEcCCcee--eee
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWD-----KTLKVWRVADLKC--LES  163 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~--~~~  163 (353)
                      ...+..++...                           ....++......++.|+.+     ..+.+||+.+.+-  +..
T Consensus        93 W~~~~~~p~~r---------------------------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~  145 (301)
T 2vpj_A           93 WYSVAPMNVRR---------------------------GLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD  145 (301)
T ss_dssp             CEEECCCSSCC---------------------------BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             eEECCCCCCCc---------------------------cceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCC
Confidence            33333332210                           1111222333556666543     3688899876543  222


Q ss_pred             ccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---
Q 018591          164 IKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---  235 (353)
Q Consensus       164 ~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  235 (353)
                      +......-.++...+..++.|+.+     ..+..||+.+.+-...   ..+......  .+++. -+++.++.|+.+   
T Consensus       146 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~--~~~~~-~~~~i~v~GG~~~~~  219 (301)
T 2vpj_A          146 MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV---TPMATKRSG--AGVAL-LNDHIYVVGGFDGTA  219 (301)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBS--CEEEE-ETTEEEEECCBCSSS
T ss_pred             CCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeC---CCCCccccc--ceEEE-ECCEEEEEeCCCCCc
Confidence            222122222233344466666654     4588899887652111   111111111  12222 256677777654   


Q ss_pred             --CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCCC
Q 018591          236 --GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREAF  290 (353)
Q Consensus       236 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~~  290 (353)
                        ..+.+||+.+..  +..............++..++++++.|+.+     ..+.+||+.+.
T Consensus       220 ~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          220 HLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ccceEEEEeCCCCc--EEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence              468899988763  333333333333334455578888888765     46788888764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.40  E-value=0.00041  Score=55.16  Aligned_cols=189  Identities=14%  Similarity=0.160  Sum_probs=101.1

Q ss_pred             eCCeEEEecCC-----CcEEEEEcCCce-----eeeeccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCcc
Q 018591          137 YNGLIYSGSWD-----KTLKVWRVADLK-----CLESIKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSH  201 (353)
Q Consensus       137 ~~~~l~~~~~d-----g~v~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~  201 (353)
                      ....++.|+.+     ..+.+||..+.+     .+..+......-..+...+..++.|+.+     ..+.+||+.+.+-.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~  141 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS  141 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence            33566667654     468999987654     2323322222222233344456666543     35888998776521


Q ss_pred             cccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe
Q 018591          202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG  276 (353)
Q Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  276 (353)
                      .   ...+......  .+++. -+++.++.|+.+     ..+.+||+.+.  .+..............++..++.+++.|
T Consensus       142 ~---~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G  213 (301)
T 2vpj_A          142 M---LGDMQTAREG--AGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVVG  213 (301)
T ss_dssp             E---EEECSSCCBS--CEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             E---CCCCCCCccc--ceEEE-ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEEe
Confidence            1   1111111111  12222 256677777654     45888998776  3333333333333334455578888888


Q ss_pred             cCC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCCC
Q 018591          277 SAD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQS  340 (353)
Q Consensus       277 ~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~  340 (353)
                      +.+     ..+.+||+.+.+ ...+..+.........+.+  +    +++++.|+.+     ..+.+||.++.+
T Consensus       214 G~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRCYVGATVL--R----GRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--T----TEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             CCCCCcccceEEEEeCCCCc-EEECCCCCCcccceeEEEE--C----CEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            764     468999998753 3344333222222222222  4    7788888866     467888887653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.39  E-value=0.00052  Score=55.83  Aligned_cols=199  Identities=11%  Similarity=0.024  Sum_probs=115.6

Q ss_pred             CceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591          129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      .....++|++  +.|+ +-...+.|..+++........+.........+++.  .+ .+++-...+.|.+.++....   
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---  149 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---  149 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence            3467889886  5554 44567889999987654333332222344667773  34 55666667889999987553   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEE-eecCC-CcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCC
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSD-GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSAD  279 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d  279 (353)
                        ...........+ ..++++|.+..|+ +-... +.|..+++...... .+. ........-.+++++ +.+.++-...
T Consensus       150 --~~~l~~~~l~~P-~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          150 --RKVLLWQSLEKP-RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIA-DTHLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             --CEEEECTTCSCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-ESC-CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             --eEEEEeCCCCCc-ceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-EEE-ECCCCCcceEEEeCCCCEEEEEECCC
Confidence              222233333445 8999999655554 44444 77888887654211 111 111112233445544 4455555667


Q ss_pred             CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      +.|..++++..... .+  +.........+++. .    +.++++-...+.|...+..+++...
T Consensus       225 ~~I~~~~~dG~~~~-~~--~~~~~~~P~giav~-~----~~ly~td~~~~~V~~~~~~~G~~~~  280 (349)
T 3v64_C          225 HVIERANLDGSHRK-AV--ISQGLPHPFAITVF-E----DSLYWTDWHTKSINSANKFTGKNQE  280 (349)
T ss_dssp             TEEEEEETTSCSCE-EE--ECSSCSSEEEEEEE-T----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CEEEEEeCCCCceE-EE--EeCCCCCceEEEEE-C----CEEEEecCCCCeEEEEEccCCCccE
Confidence            88999998754322 22  12223456778883 3    5667777777888888865555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.36  E-value=0.00057  Score=54.75  Aligned_cols=201  Identities=11%  Similarity=0.006  Sum_probs=113.8

Q ss_pred             CceEEEEEeC--CeEE-EecCCCcEEEEEcCC----ceeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCC
Q 018591          129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVAD----LKCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELG  198 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~  198 (353)
                      .....++|++  +.|+ +-..++.|..+++..    ......+...-.....+++.  .+ .+++-...+.|.++++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            3567888886  4444 445568899999865    22222222222345677773  34 4555567889999998754


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-C-CcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEE
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-D-GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCS  275 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~  275 (353)
                      .     ...........+ ..++++|.+..++.... . +.|..+++.....  +...........-.++.+++. +.++
T Consensus       110 ~-----~~~~~~~~~~~P-~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~~~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          110 K-----RKTLFRENGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             S-----EEEEEECTTCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             c-----eEEEEECCCCCc-ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe--EEEEECCCCCceEEEEeccCCEEEEE
Confidence            3     222233233445 89999996665554443 2 6788888764321  111111112223344554444 4455


Q ss_pred             ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          276 GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       276 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      -...+.|..+|++... ...+............+++. .    +.++++-...+.|..++..+++...
T Consensus       182 D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~----~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          182 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-E----DKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             ETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-T----TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             ECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-C----CEEEEEECCCCeEEEEeCCCCcceE
Confidence            5567899999987533 22232221223346778775 3    5677777778899999876665443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.33  E-value=0.00065  Score=54.02  Aligned_cols=189  Identities=14%  Similarity=0.179  Sum_probs=99.8

Q ss_pred             eCCeEEEecCC-----CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcCCC-----cEEEEeCCCCCccccc
Q 018591          137 YNGLIYSGSWD-----KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASADG-----KIKAWGKELGKSHCHS  204 (353)
Q Consensus       137 ~~~~l~~~~~d-----g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~  204 (353)
                      ....++.|+.+     ..+.+||..+.+-.  ..+......-....+.+..++.|+.++     .+.+||+.+.+-..  
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH--  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEE--
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEee--
Confidence            33566667654     35888998765432  222222222223333555666666553     47788887765211  


Q ss_pred             ceeeeeccCCceeeEEEEcCCCCeEEeecCC-------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591          205 LKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  277 (353)
                       ...+......  .+++. -+++.++.|+.+       ..+.+||+.+..  +..............+...++.+++.|+
T Consensus       139 -~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG  212 (302)
T 2xn4_A          139 -VAPMNTRRSS--VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLNNLLYAVGG  212 (302)
T ss_dssp             -ECCCSSCCBS--CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             -cCCCCCcccC--ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEECCEEEEECC
Confidence             1111111111  12222 256666666543       358889987763  3333333333333344455788888887


Q ss_pred             CC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC-----eEEEEEcCCCC
Q 018591          278 AD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK-----SLRVWWVSKQS  340 (353)
Q Consensus       278 ~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~  340 (353)
                      .+     ..+.+||+.+.+ ...+..+......-..+.  .+    +++++.|+.++     .+.+||.++.+
T Consensus       213 ~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~--~~----~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRNAGVCA--VN----GLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE--ET----TEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCCCcccceEEEEeCCCCC-EeeCCCCCCccccCeEEE--EC----CEEEEECCcCCCcccccEEEEcCCCCe
Confidence            64     468899988743 333433322111112222  24    78888888664     48889887653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.00089  Score=55.56  Aligned_cols=227  Identities=11%  Similarity=0.073  Sum_probs=130.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCcc--ceeEEeecccccc
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSE--NVFRLVDTLPTTK  101 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~--~~~~~~~~~~~~~  101 (353)
                      .+|+.+.. ..|+..++........+.. ...+.+++|+  ++.|+.+ ...+.|+.++++....  .....        
T Consensus        84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~--------  153 (400)
T 3p5b_L           84 AYLFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--------  153 (400)
T ss_dssp             CEEEEEET-TEEEEECTTSCSCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE--------
T ss_pred             ceeEEecc-ceeEEEccCCcceeEeccc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE--------
Confidence            34554443 6899999877665544443 4567889988  4555544 4567788888765320  00001        


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeC
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK  178 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~  178 (353)
                                            ..........+++..   +++++-...+.|.+.+++.......+...-.....|++.+
T Consensus       154 ----------------------~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp  211 (400)
T 3p5b_L          154 ----------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP  211 (400)
T ss_dssp             ----------------------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred             ----------------------EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence                                  011223456677765   4444555678899998865444333333344578888843


Q ss_pred             --CeEEEEc-C-CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeee
Q 018591          179 --GIVYSAS-A-DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLA  253 (353)
Q Consensus       179 --~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~  253 (353)
                        +.|+.+. . .+.|...++....     ........-..+ ..+++++++..|+.+ ...+.|..+|+...... .+.
T Consensus       212 ~~g~ly~td~~~~~~I~~~~~dG~~-----~~~~~~~~l~~P-~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~  284 (400)
T 3p5b_L          212 VHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL  284 (400)
T ss_dssp             TTTEEEEEECSSSCCEEEEETTSCS-----CEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEE
T ss_pred             ccCeEEEEeCCCCCEEEEEeCCCCc-----cEEEEECCCCce-EEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEE
Confidence              4554443 2 4778888887544     222223333445 899999877666655 45678999998754211 121


Q ss_pred             eeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcce
Q 018591          254 CETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       254 ~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                       ...........++.. +.++++-...+.|..+|..+++..
T Consensus       285 -~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          285 -EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             -ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             -eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence             111111223344444 556666677788999997777643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.31  E-value=0.00064  Score=54.05  Aligned_cols=229  Identities=10%  Similarity=0.141  Sum_probs=114.8

Q ss_pred             ECCcEEEEEeCC----CcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecCCC-----cEEEEEcccCccceeE
Q 018591           24 LCGEFILSASQG----KDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQDS-----RIRVWKVSRSSENVFR   92 (353)
Q Consensus        24 ~~~~~l~s~~~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~~w~~~~~~~~~~~   92 (353)
                      +.+.+++.|+.+    ..+..+|+.+.+-...  +......-..+...+..++.|+.++     .+.+||..+..   ..
T Consensus        14 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~---W~   90 (302)
T 2xn4_A           14 LPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ---WT   90 (302)
T ss_dssp             -CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE---EE
T ss_pred             CCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc---ee
Confidence            345666667654    4688899877653322  1111111122233455666666543     57778876654   22


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCC-----cEEEEEcCCceee--eecc
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDK-----TLKVWRVADLKCL--ESIK  165 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~--~~~~  165 (353)
                      .+..++..                           ......+.+....++.|+.++     .+.+||+.+.+-.  ..+.
T Consensus        91 ~~~~~p~~---------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p  143 (302)
T 2xn4_A           91 SVANMRDR---------------------------RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN  143 (302)
T ss_dssp             EECCCSSC---------------------------CBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS
T ss_pred             eCCCCCcc---------------------------ccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC
Confidence            33222211                           001112223335566666543     5778888765432  2222


Q ss_pred             ccCcceEEEEEeCCeEEEEcCC-------CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC---
Q 018591          166 AHDDAVNGLVASKGIVYSASAD-------GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD---  235 (353)
Q Consensus       166 ~~~~~v~~i~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  235 (353)
                      .......+..+.+..++.|+.+       ..+..||+.+.+-..   ...+......  .+++. -++++++.|+.+   
T Consensus       144 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRSG--AGVGV-LNNLLYAVGGHDGPL  217 (302)
T ss_dssp             SCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSSCCBS--CEEEE-ETTEEEEECCBSSSS
T ss_pred             CcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCcccccc--ccEEE-ECCEEEEECCCCCCc
Confidence            2122222233344455666542       358889988765211   1111111111  12222 256677777654   


Q ss_pred             --CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-----eEEEEecCCC
Q 018591          236 --GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-----SIGIWKREAF  290 (353)
Q Consensus       236 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iw~~~~~  290 (353)
                        ..+.+||+.+..  +...............+..++.+++.|+.++     .+.+||+.+.
T Consensus       218 ~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          218 VRKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             BCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             ccceEEEEeCCCCC--EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence              368899988763  3333333322223334455788888887653     4889998864

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.30  E-value=0.0002  Score=63.75  Aligned_cols=234  Identities=8%  Similarity=0.040  Sum_probs=115.5

Q ss_pred             EEEE--CCcEEEEEeC-CCcEEEEeCCCceeeEEe--ccCceeeEEEEE-eCCEEEEec-CC-----CcEEEEEcccCcc
Q 018591           21 SLAL--CGEFILSASQ-GKDIIVWQQPDLRMFTKF--GHGDGSVKAVVT-VGNKVFTAH-QD-----SRIRVWKVSRSSE   88 (353)
Q Consensus        21 ~~~~--~~~~l~s~~~-dg~v~vwd~~~~~~~~~~--~~~~~~v~~~~~-~~~~l~s~~-~d-----g~i~~w~~~~~~~   88 (353)
                      ++++  ++++++.|+. +..+.+||..+.+-...-  ......-.+... +++.++.|+ .+     ..+.+||..+.. 
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~-  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT-  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE-
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc-
Confidence            3444  5888888884 568999998776533221  211222233444 477788887 34     468999987654 


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHD  168 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  168 (353)
                        +..+............            ..  ....+...+..+......++.......+..||..+.........+.
T Consensus       326 --W~~~~~~~~~p~~~~~------------~~--~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~  389 (656)
T 1k3i_A          326 --WTSLPNAKVNPMLTAD------------KQ--GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ  389 (656)
T ss_dssp             --EEEETTSCSGGGCCCC------------TT--GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE
T ss_pred             --ceeCCCcccccccccc------------cc--ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccc
Confidence              2222110000000000            00  0000111111111111122222234567888887655333221111


Q ss_pred             ---------cceEEEEE---eCCeEEEEcCCC-----------cEEEEeCCCCCcccccceeee--eccCCceeeEEEEc
Q 018591          169 ---------DAVNGLVA---SKGIVYSASADG-----------KIKAWGKELGKSHCHSLKGIL--EGHKDVSLNSVVVS  223 (353)
Q Consensus       169 ---------~~v~~i~~---~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~  223 (353)
                               ..-.++.+   .+..++.|+.++           .+.+||..+...     ....  ..+....-.+.+..
T Consensus       390 ~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-----~~~~~~~mp~~R~~~~~~~l  464 (656)
T 1k3i_A          390 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-----TVFASNGLYFARTFHTSVVL  464 (656)
T ss_dssp             ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-----EEECTTCCSSCCBSCEEEEC
T ss_pred             cccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-----eEEccCCCCCCcccCCeEEC
Confidence                     12234443   233666666432           577888776641     1111  11122112455677


Q ss_pred             CCCCeEEeecCC-----------CcEEEeeccccccceeeeeeccccce--eEEEEEEcCcEEEEecC
Q 018591          224 DDGKWVYGGGSD-----------GFVMGWEGNVEIVRWKLACETKAHEM--AVLCVCLVGEFLCSGSA  278 (353)
Q Consensus       224 ~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~~  278 (353)
                      |++++++.|+.+           ..+.+||..+..  +...........  ....+.+++++++.|+.
T Consensus       465 ~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          465 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc--eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            899999998854           468999998753  333222222221  12233458999999885

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.27  E-value=0.0009  Score=53.32  Aligned_cols=189  Identities=13%  Similarity=0.126  Sum_probs=101.5

Q ss_pred             EeCCeEEEecCC----CcEEEEEcCCcee--eeeccccCcceEEEEEeCCeEEEEcCC------CcEEEEeCCCCCcccc
Q 018591          136 VYNGLIYSGSWD----KTLKVWRVADLKC--LESIKAHDDAVNGLVASKGIVYSASAD------GKIKAWGKELGKSHCH  203 (353)
Q Consensus       136 ~~~~~l~~~~~d----g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~  203 (353)
                      .....++.|+.+    ..+.+||..+.+-  +..+......-..+...+..++.|+.+      ..+.+||..+.+-.. 
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-  132 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT-  132 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-
Confidence            334666677654    6788999877543  222322222222333344566666654      458889988765211 


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecC---------CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGS---------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                        ...+......  .+++. -++++++.|+.         -..+.+||..+..  +..............++..++++++
T Consensus       133 --~~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v  205 (306)
T 3ii7_A          133 --KPSMLTQRCS--HGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFVKDKIFA  205 (306)
T ss_dssp             --ECCCSSCCBS--CEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEE
T ss_pred             --CCCCcCCcce--eEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEECCEEEE
Confidence              1111111111  12222 25666666653         3458889988763  3333333333333344445778888


Q ss_pred             EecCC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCC
Q 018591          275 SGSAD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQ  339 (353)
Q Consensus       275 ~~~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~  339 (353)
                      .|+.+     ..+.+||+.+.+ ...+..+.........+.+  +    +++++.|+.+     ..+.+||+++.
T Consensus       206 ~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          206 VGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV--G----SIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE--T----TEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE--C----CEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            87754     458899988743 3344333322222233333  4    7788888854     46888888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.23  E-value=0.0015  Score=54.25  Aligned_cols=204  Identities=12%  Similarity=0.015  Sum_probs=117.4

Q ss_pred             cCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCc----eeeeeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCC
Q 018591          127 HADSISCLTVYN--GLIYSG-SWDKTLKVWRVADL----KCLESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKE  196 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~  196 (353)
                      ....+..++|++  +.|+.. ...+.|+.+++...    .....+.........+++.  .+ ++++-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            345677899986  555544 45678888887642    2222232233456677773  34 55666677899999987


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEE-
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFL-  273 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-  273 (353)
                      ...     ...........+ ..+++.|.+..|+...  ..+.|...++...... .+.. .......-.++++++..| 
T Consensus       190 g~~-----~~~l~~~~~~~P-~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~~-~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          190 GVK-----RKTLFRENGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT-ENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             TCS-----EEEEEECSSCCE-EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEEC-SSCSCEEEEEEETTTTEEE
T ss_pred             CCc-----eEEEEeCCCCCc-ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEEE-CCCCceEEEEEEeCCCEEE
Confidence            654     233333333445 8999999766655544  2467888887754211 1111 111122334455444444 


Q ss_pred             EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      ++=...+.|..+|++.... ..+....+......++++..     +.++++-...+.|..++..+++.+..
T Consensus       262 ~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~~-----~~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          262 WVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             EEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEET-----TEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             EEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEeC-----CEEEEecCCCCeEEEEEcCCCCceEE
Confidence            4545678999999875432 22322222233456777743     56666777778899898777655443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.22  E-value=0.0012  Score=52.64  Aligned_cols=227  Identities=11%  Similarity=0.049  Sum_probs=117.3

Q ss_pred             CcEEEEEeC--CCcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecCC----CcEEEEEcccCccceeEEeecc
Q 018591           26 GEFILSASQ--GKDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQD----SRIRVWKVSRSSENVFRLVDTL   97 (353)
Q Consensus        26 ~~~l~s~~~--dg~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~d----g~i~~w~~~~~~~~~~~~~~~~   97 (353)
                      +.+++.|+.  ...+.+||..+.+-...  +......-.++...+..++.|+.+    ..+.+||+.+..   ...+..+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~---W~~~~~~   88 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS---WYSKLGP   88 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE---EEEEECC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe---EEECCCC
Confidence            345556654  35788999877653321  222122222333446666667654    467778876654   2233322


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCC------CcEEEEEcCCceeee--eccccCc
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWD------KTLKVWRVADLKCLE--SIKAHDD  169 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~--~~~~~~~  169 (353)
                      +..                           ......+.+....++.|+.+      ..+.+||..+.+-..  .+.....
T Consensus        89 p~~---------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~  141 (306)
T 3ii7_A           89 PTP---------------------------RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC  141 (306)
T ss_dssp             SSC---------------------------CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             Ccc---------------------------ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc
Confidence            211                           01112223333566677655      468899987754322  2221111


Q ss_pred             ceEEEEEeCCeEEEEcC---------CCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----
Q 018591          170 AVNGLVASKGIVYSASA---------DGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----  235 (353)
Q Consensus       170 ~v~~i~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  235 (353)
                      .-.++...+..++.|+.         -..+.+||+.+..-..   ...+......  .+++.. ++++++.|+.+     
T Consensus       142 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~--~~~~~~-~~~i~v~GG~~~~~~~  215 (306)
T 3ii7_A          142 SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIEARKN--HGLVFV-KDKIFAVGGQNGLGGL  215 (306)
T ss_dssp             SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE---ECCCSSCCBS--CEEEEE-TTEEEEECCEETTEEB
T ss_pred             eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE---CCCccchhhc--ceEEEE-CCEEEEEeCCCCCCCC
Confidence            22223334445555553         3458899988775211   1111111111  122222 56677777654     


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCCC
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREAF  290 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~~  290 (353)
                      ..+.+||+.+.  .+.....+........++..++.+++.|+.+     ..+.+||+.+.
T Consensus       216 ~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          216 DNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CCEEEEETTTT--EEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             ceEEEeeCCCC--cEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            35888998876  3444333333333344555578888888854     56888998774

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.20  E-value=0.0013  Score=52.39  Aligned_cols=237  Identities=11%  Similarity=0.060  Sum_probs=124.9

Q ss_pred             CceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591           45 DLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR  122 (353)
Q Consensus        45 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (353)
                      ..+.+..+... .....++++  ++.+++-..++.|..||.+...   ...   .                         
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~---~~~---~-------------------------   68 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---QIH---A-------------------------   68 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE---EEE---E-------------------------
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce---EEE---E-------------------------
Confidence            34455555432 345677786  5555555577888888765431   000   0                         


Q ss_pred             eeeecCCceEEEEEeC-CeEEEecC--CC-cEEEEEcCCceeeeeccc-cCcceEEEEE-eCCeEE-EEcCCCcEEEEeC
Q 018591          123 LWIEHADSISCLTVYN-GLIYSGSW--DK-TLKVWRVADLKCLESIKA-HDDAVNGLVA-SKGIVY-SASADGKIKAWGK  195 (353)
Q Consensus       123 ~~~~~~~~i~~~~~~~-~~l~~~~~--dg-~v~iwd~~~~~~~~~~~~-~~~~v~~i~~-~~~~l~-~~~~dg~i~iwd~  195 (353)
                         ........+++.+ ..++++..  ++ .|..+|..+++....... .......++. .++.++ +-..++.|..+|.
T Consensus        69 ---~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           69 ---TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             ---ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             ---eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence               1123567788887 44454442  22 477777777664332211 1222344444 444444 4445888999987


Q ss_pred             CCCCcccc---ccee--eeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeeccc-cccc-eeeeeeccccceeEEEEE
Q 018591          196 ELGKSHCH---SLKG--ILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNV-EIVR-WKLACETKAHEMAVLCVC  267 (353)
Q Consensus       196 ~~~~~~~~---~~~~--~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~~~v~~~~  267 (353)
                      ..++....   ....  ........+ +.+  +|+++.|+. -...+.|..|++.. +... .......  ....-.++.
T Consensus       146 ~~~~~~v~~~~~~~~~~~~~~~~~~p-ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd  220 (306)
T 2p4o_A          146 VQPSGSIWLEHPMLARSNSESVFPAA-NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFD  220 (306)
T ss_dssp             TTTEEEEEEECGGGSCSSTTCCSCSE-EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEB
T ss_pred             CCCcEeEEEECCccccccccCCCCcC-CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEEC
Confidence            65421000   0000  000111222 555  788876554 45678899999875 2110 1111111  112235566


Q ss_pred             EcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee---cCCCCCCeEEEEccC
Q 018591          268 LVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS---PNAVGGGFLLYSGSL  327 (353)
Q Consensus       268 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~~l~s~~~  327 (353)
                      .+|+++++....+.|.+++.. ++. ..+..+.......++++|.   |+    +..|+.++.
T Consensus       221 ~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~~~~~p~~~a~~g~~~d----~~~LyVt~~  277 (306)
T 2p4o_A          221 VEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQGVIGSTAVAFGQTEGD----CTAIYVVTN  277 (306)
T ss_dssp             TTCCEEEECBTTCCEEEECTT-CCE-EEEECGGGTCTTEEEEEECCSTTT----TTEEEEEEC
T ss_pred             CCCCEEEEeCCCCeEEEECCC-CCE-EEEeecccccCCceEEEEecccCC----CCEEEEECC
Confidence            678887777778899999975 332 1232233233568999998   77    555555443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.18  E-value=0.0048  Score=58.27  Aligned_cols=70  Identities=10%  Similarity=0.121  Sum_probs=48.7

Q ss_pred             cCceEEEEEC--------CcEEEEEeC-CCcEEEEeCCCceeeEEeccC-ceeeEEEEEe----CCEEEEecCCCcEEEE
Q 018591           16 VGSVSSLALC--------GEFILSASQ-GKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV----GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        16 ~~~v~~~~~~--------~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~----~~~l~s~~~dg~i~~w   81 (353)
                      ...|.|+++.        .++++.|.. |++|+|+++++.+.+....-. .....++.+.    ..+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            4579999984        369999997 999999999987766543221 1233344332    3478888899998777


Q ss_pred             Eccc
Q 018591           82 KVSR   85 (353)
Q Consensus        82 ~~~~   85 (353)
                      .++.
T Consensus       633 ~~d~  636 (1158)
T 3ei3_A          633 GLNI  636 (1158)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            6653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.18  E-value=0.0011  Score=50.72  Aligned_cols=202  Identities=9%  Similarity=-0.022  Sum_probs=119.5

Q ss_pred             ecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE-eCCeE-EEEcCCCcEEEEeCCCCC
Q 018591          126 EHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA-SKGIV-YSASADGKIKAWGKELGK  199 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~-~~~~l-~~~~~dg~i~iwd~~~~~  199 (353)
                      +-...+..++++|  + ++++...++.|...|.. ++.++.+.-. ....-.|++ .++.+ ++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            4556799999997  4 55557788999999987 8877776321 245677888 45544 444467789998876554


Q ss_pred             cccccceeee---eccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccc--ccceeeeee--c--cccceeEEEEEEc-
Q 018591          200 SHCHSLKGIL---EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE--IVRWKLACE--T--KAHEMAVLCVCLV-  269 (353)
Q Consensus       200 ~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~--~--~~~~~~v~~~~~~-  269 (353)
                      .........+   ......-...++++|.++.|+++.......+|.+...  .........  +  ........+++++ 
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp  182 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ  182 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence            2100000101   1122222489999999988887776666666666421  000111100  0  0111123344443 


Q ss_pred             --CcEEEEecCCCeEEEEecCCCcceEEecccc-CCC------cCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          270 --GEFLCSGSADKSIGIWKREAFGKLCRVGAIT-GHE------GPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       270 --~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~h~------~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                        +.+++....++.+..+|... + +.....+. +..      ...-.|+|.++    |++.++ ++-+.++.+.
T Consensus       183 ~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~----G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          183 QKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAMDAS----GNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             TTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEECTT----CCEEEE-ETTTEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEECCC----CCEEEE-cCCceEEEEE
Confidence              77888888899999999764 3 22333333 221      25688999999    875555 6666555554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=0.0023  Score=53.66  Aligned_cols=196  Identities=7%  Similarity=0.030  Sum_probs=103.1

Q ss_pred             CceEEEEEeC--CeEEEecC-CC----cEEEEEcCCceee--eeccccCcceEEEEEeC--Ce-EEEEcCCCcEEEEeCC
Q 018591          129 DSISCLTVYN--GLIYSGSW-DK----TLKVWRVADLKCL--ESIKAHDDAVNGLVASK--GI-VYSASADGKIKAWGKE  196 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~~~~~-dg----~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~--~~-l~~~~~dg~i~iwd~~  196 (353)
                      .....+++++  +.|+++.. ++    .+...+. .+...  ..+.. ......+++.+  +. +++-..++.|..++..
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            4567888887  53555543 22    2333443 33221  22221 23345677743  44 4455567889999987


Q ss_pred             CCCcccccceeeeec-cCCceeeEEEEcCCCCe-EEeecCCCcEEEeeccccccce----eeeeec--cc----------
Q 018591          197 LGKSHCHSLKGILEG-HKDVSLNSVVVSDDGKW-VYGGGSDGFVMGWEGNVEIVRW----KLACET--KA----------  258 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~----~~~~~~--~~----------  258 (353)
                      ...     ....... ....+ ..++|+|++++ +++-...+.|..++........    ......  .+          
T Consensus       257 ~~~-----~~~~~~~~~~~~P-~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~  330 (430)
T 3tc9_A          257 TQE-----TTPLFTIQDSGWE-FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR  330 (430)
T ss_dssp             TTE-----EEEEEECSSSSCC-EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred             CCc-----EEEEEEcCCCCcc-eeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence            654     2112221 12334 88999999994 4555567889998766421110    011000  00          


Q ss_pred             ccee--EEEEE--------EcCcEEEEecCCCeEEEEecCCCcceEEeccc-----cC----------CCcCeEEEEeec
Q 018591          259 HEMA--VLCVC--------LVGEFLCSGSADKSIGIWKREAFGKLCRVGAI-----TG----------HEGPVKCLQASP  313 (353)
Q Consensus       259 ~~~~--v~~~~--------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~----------h~~~v~~~~~~~  313 (353)
                      ...+  ...+.        .++.++++=..++.|+.++. ++. ...+.-.     .+          .-.....|+++|
T Consensus       331 ~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          331 MHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             BSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             eCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence            0111  22232        12456666566778888884 332 1111110     01          012578999999


Q ss_pred             CCCCCCeEEEEccCCCeEEEEEcC
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +   ++.++++-..+..|+.++++
T Consensus       409 ~---~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          409 E---RECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             T---TTEEEEEEGGGTEEEEEEEC
T ss_pred             C---CCEEEEEECCCCeEEEEccC
Confidence            3   16777776777888888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.15  E-value=0.0017  Score=51.82  Aligned_cols=187  Identities=12%  Similarity=0.110  Sum_probs=98.0

Q ss_pred             CeEEEecC----C-----CcEEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCccc
Q 018591          139 GLIYSGSW----D-----KTLKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSHC  202 (353)
Q Consensus       139 ~~l~~~~~----d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  202 (353)
                      ..++.|+.    +     ..+.+||..+.+-..  .+......-....+.+..++.|+.+     ..+.+||+.+.+-..
T Consensus        72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  151 (308)
T 1zgk_A           72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL  151 (308)
T ss_dssp             EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE
T ss_pred             EEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeE
Confidence            55566654    2     468889987654322  2222122222233344456666543     358889988765211


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  277 (353)
                      ..   .+....... ..+.+  ++++++.|+.+     ..+.+||+.+..  +..............++..++.+++.|+
T Consensus       152 ~~---~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG  223 (308)
T 1zgk_A          152 VA---PMLTRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIYAAGG  223 (308)
T ss_dssp             CC---CCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred             CC---CCCccccce-EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEECCEEEEEeC
Confidence            11   111111111 22222  56677777654     458889987763  3333333322333344455788888887


Q ss_pred             CC-----CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC-----CeEEEEEcCCCC
Q 018591          278 AD-----KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD-----KSLRVWWVSKQS  340 (353)
Q Consensus       278 ~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~~  340 (353)
                      .+     ..+.+||+.+.+ ...+..+.........+.+  +    +++++.|+.+     ..+.+||+++.+
T Consensus       224 ~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETET-WTFVAPMKHRRSALGITVH--Q----GRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--T----TEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCCCccceEEEEeCCCCc-EEECCCCCCCccceEEEEE--C----CEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            64     568999988743 3333333222222222222  4    7788888754     357888887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.14  E-value=0.0018  Score=51.65  Aligned_cols=231  Identities=10%  Similarity=0.081  Sum_probs=116.4

Q ss_pred             EEECCcEEEEEeCC----CcEEEEeCCCceeeEE--eccCceeeEEEEEeCCEEEEecC----C-----CcEEEEEcccC
Q 018591           22 LALCGEFILSASQG----KDIIVWQQPDLRMFTK--FGHGDGSVKAVVTVGNKVFTAHQ----D-----SRIRVWKVSRS   86 (353)
Q Consensus        22 ~~~~~~~l~s~~~d----g~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~~~----d-----g~i~~w~~~~~   86 (353)
                      +.+++.+++.|+.+    ..+.++|..+.+-...  +......-..+...+..++.|+.    +     ..+.+||+.+.
T Consensus        21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            33457777777742    4688999877653322  11111111222333555666665    2     35777887665


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCC-----CcEEEEEcCCceee
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWD-----KTLKVWRVADLKCL  161 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~  161 (353)
                      .   ...+..++..                           ......+.+....++.|+.+     ..+.+||..+.+-.
T Consensus       101 ~---W~~~~~~p~~---------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  150 (308)
T 1zgk_A          101 Q---WSPCAPMSVP---------------------------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH  150 (308)
T ss_dssp             E---EEECCCCSSC---------------------------CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred             e---EeECCCCCcC---------------------------ccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence            4   2222222211                           01111222333555666543     46888998765432


Q ss_pred             e--eccccCcceEEEEEeCCeEEEEcCC-----CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC
Q 018591          162 E--SIKAHDDAVNGLVASKGIVYSASAD-----GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS  234 (353)
Q Consensus       162 ~--~~~~~~~~v~~i~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  234 (353)
                      .  .+......-.++.+.+..++.|+.+     ..+..||+.+.+-...   ..+....... ..+.+  ++++++.|+.
T Consensus       151 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~-~~~~~--~~~iyv~GG~  224 (308)
T 1zgk_A          151 LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGA-GVCVL--HNCIYAAGGY  224 (308)
T ss_dssp             ECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSC-EEEEE--TTEEEEECCB
T ss_pred             ECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---CCCCCccccc-eEEEE--CCEEEEEeCC
Confidence            2  2222122222233344466666654     4588899877652111   1111111111 22222  5667777765


Q ss_pred             C-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCCC
Q 018591          235 D-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREAF  290 (353)
Q Consensus       235 d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~~  290 (353)
                      +     ..+.+||+.+.  .+.....+........++..++++++.|+.+     ..+.+||+.+.
T Consensus       225 ~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            4     46889998876  3333333333233334444578888888754     45788888764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.12  E-value=0.002  Score=51.42  Aligned_cols=186  Identities=16%  Similarity=0.126  Sum_probs=111.0

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCe--------E-EEEc-C--CCcEEEEeCC--CCCccccc
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGI--------V-YSAS-A--DGKIKAWGKE--LGKSHCHS  204 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--------l-~~~~-~--dg~i~iwd~~--~~~~~~~~  204 (353)
                      .+++.....+-+.+||+ +++.++.+..  +.++.+...+++        + ++.. .  +++|.+|++.  +..     
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-----  112 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-----  112 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-----
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-----
Confidence            56676777789999999 8888888753  567777764432        3 3333 3  5789999774  332     


Q ss_pred             ceeeee-------ccCCceeeEEEE--cCC-CC-eEEeecCCCcEEEeeccc---cccceeeeeeccccceeEEEEEE--
Q 018591          205 LKGILE-------GHKDVSLNSVVV--SDD-GK-WVYGGGSDGFVMGWEGNV---EIVRWKLACETKAHEMAVLCVCL--  268 (353)
Q Consensus       205 ~~~~~~-------~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~--  268 (353)
                       .....       .....+ ..+++  +|. ++ ++++...+|.+..|++..   +....+....+..... +-.+..  
T Consensus       113 -l~~i~~~~~pv~t~~~~p-yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq-~EgcvvDd  189 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEV-YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ-TEGMAADD  189 (355)
T ss_dssp             -EEECSCTTSCEECCCSSC-CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC-EEEEEEET
T ss_pred             -eeeccccccCcCCCCCCe-eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC-cceEEEcC
Confidence             11111       111223 66777  774 43 688888999999999843   2233344555444332 323333  


Q ss_pred             cCcEEEEecCCCeEEEEecCCCc--ceEEeccc-cCC-CcCeEEEEeecCCCCCCe-EEEEcc-CCCeEEEEEcC
Q 018591          269 VGEFLCSGSADKSIGIWKREAFG--KLCRVGAI-TGH-EGPVKCLQASPNAVGGGF-LLYSGS-LDKSLRVWWVS  337 (353)
Q Consensus       269 ~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~-~~h-~~~v~~~~~~~~~~~~~~-~l~s~~-~dg~i~iw~~~  337 (353)
                      ....|+.+-++.-|..++.+...  ....+... .++ ...+..|++-+...  ++ +|++++ .+.+..+|+.+
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~--g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD--GKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG--GCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC--CCEEEEEEcCCCCEEEEEECC
Confidence            36788888888777666744221  22233332 122 23688888854322  33 455444 67799999997

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.12  E-value=0.0022  Score=52.38  Aligned_cols=140  Identities=9%  Similarity=-0.025  Sum_probs=67.5

Q ss_pred             CcEEEEEcCCcee--eeeccccCcceEEEEE-eCCeEEEEcC------CCcEEEEeC--CCCCcccccceeeeeccCCce
Q 018591          148 KTLKVWRVADLKC--LESIKAHDDAVNGLVA-SKGIVYSASA------DGKIKAWGK--ELGKSHCHSLKGILEGHKDVS  216 (353)
Q Consensus       148 g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~-~~~~l~~~~~------dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~  216 (353)
                      ..+.+||..+.+-  +..+......-.+++. .+..++.|+.      ...+..||+  .+..  .. ....+.......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~-~~~~~~~~~~~~  244 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WN-KLAPVSSPDGVA  244 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE--EE-ECCCSSTTTCCB
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc--EE-ecCCCCCCcccc
Confidence            5789999876543  3333211111123333 4445556553      345777876  3332  11 111111111111


Q ss_pred             eeEEEEcCCCCeEEeecCC----------------------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          217 LNSVVVSDDGKWVYGGGSD----------------------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                       ...+...++++++.|+.+                      ..+.+||+.+.  .|.....+........++..++++++
T Consensus       245 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v  321 (357)
T 2uvk_A          245 -GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG--KWDKSGELSQGRAYGVSLPWNNSLLI  321 (357)
T ss_dssp             -SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEE
T ss_pred             -cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC--ceeeCCCCCCCcccceeEEeCCEEEE
Confidence             111223356677777632                      25778888865  34444444433333445567788888


Q ss_pred             EecCCC------eEEEEecCCCcce
Q 018591          275 SGSADK------SIGIWKREAFGKL  293 (353)
Q Consensus       275 ~~~~dg------~i~iw~~~~~~~~  293 (353)
                      .|+.++      .|.++++++++..
T Consensus       322 ~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          322 IGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             EEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             EeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            888643      4666688876643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.09  E-value=0.0028  Score=51.92  Aligned_cols=184  Identities=11%  Similarity=0.103  Sum_probs=123.3

Q ss_pred             CCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---CceeeEEE
Q 018591          146 WDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---DVSLNSVV  221 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~  221 (353)
                      ....+.++|+++.+.++.+... ..|.-=.| +++.|+..+. ..|+-|++....    .+...+..|.   +.-|....
T Consensus        84 ag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s----~P~kvFdR~~~L~~~QIInY~  157 (494)
T 1bpo_A           84 AGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTD-NAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYR  157 (494)
T ss_dssp             ETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETTEEEEECS-SEEEEEESSSSC----CCEEEEECCGGGTTCEEEEEE
T ss_pred             cCCeEEEEchHHhhhhcceecC-CCceEEEecCCCeEEEEcC-CeeEEecccCCC----CchhheecchhcccceEEEEE
Confidence            3689999999999888887653 45666666 8887776654 589999997633    2444444433   33346777


Q ss_pred             EcCCCCeEEeec-------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-----EEEEecC---CCeEEEEe
Q 018591          222 VSDDGKWVYGGG-------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-----FLCSGSA---DKSIGIWK  286 (353)
Q Consensus       222 ~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~---dg~i~iw~  286 (353)
                      .+++.++++..+       -.|.+.+|..+.+     ....+.+|......+..+|+     +++-+..   .+.++|.+
T Consensus       158 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~E  232 (494)
T 1bpo_A          158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE  232 (494)
T ss_dssp             ECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEE
T ss_pred             ECCCCCeEEEEeecccCCcccceEEEeecccc-----ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence            788898877543       2477889988875     45566777776666665532     3333322   37899999


Q ss_pred             cCCC---cc-----eEEe-ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          287 REAF---GK-----LCRV-GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       287 ~~~~---~~-----~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +...   ..     ...+ .....-.+-..++..++.    ...+..-+.-|.|++||++++.++..
T Consensus       233 i~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k----ygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK----HDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             CSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT----TTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cCCCccCCCCccceeeeeeCCcccccCceeEEEeccc----CCEEEEEecCceEEEEecccceeeee
Confidence            8643   10     0011 011123455678888888    67888888999999999999988764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.04  E-value=0.0029  Score=50.61  Aligned_cols=226  Identities=12%  Similarity=0.072  Sum_probs=124.9

Q ss_pred             EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCcc-ceeEEeecccccccee
Q 018591           29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSE-NVFRLVDTLPTTKDYL  104 (353)
Q Consensus        29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~  104 (353)
                      |+.+.. ..|+..|+.+.+....+.. .....++.|+  ++.|+ +-..++.|..++++.... .....+          
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~----------   71 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----------   71 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE----------
T ss_pred             EEEECC-CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE----------
Confidence            444433 5799999988776655543 3456788887  44555 445567888888765210 000000          


Q ss_pred             eeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CC
Q 018591          105 GKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KG  179 (353)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~  179 (353)
                                         +.........+++.+  +.| ++-...+.|.+.++........+.........+++.  .+
T Consensus        72 -------------------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g  132 (316)
T 1ijq_A           72 -------------------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG  132 (316)
T ss_dssp             -------------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred             -------------------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence                               001112335667764  444 454667889999986543332233233466888884  34


Q ss_pred             eEEEEcC-C-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeeeeec
Q 018591          180 IVYSASA-D-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       180 ~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                      .++.+.. . +.|...++....     ...........+ ..++++|++..|+.+ ...+.|..+|+..... ..+. ..
T Consensus       133 ~ly~~d~~~~~~I~~~~~dG~~-----~~~~~~~~~~~P-~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~-~~  204 (316)
T 1ijq_A          133 FMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTIL-ED  204 (316)
T ss_dssp             EEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-EC
T ss_pred             EEEEEccCCCCeEEEEcCCCCC-----eEEEEECCCCCc-eEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEe-ec
Confidence            4444433 3 678888876443     111122223344 899999876666544 4567899999875321 1111 11


Q ss_pred             cccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcce
Q 018591          257 KAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       257 ~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                      .........++.+ +.++++-...+.|..++..+++..
T Consensus       205 ~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          205 EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcce
Confidence            1111122333334 566666667889999998776643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.04  E-value=0.0041  Score=52.14  Aligned_cols=196  Identities=9%  Similarity=0.015  Sum_probs=101.4

Q ss_pred             CceEEEEEeC-CeEEEecCCC-----cEEEEEcCCcee-eeeccccCcceEEEEEe--CCeEE-EEcCCCcEEEEeCCCC
Q 018591          129 DSISCLTVYN-GLIYSGSWDK-----TLKVWRVADLKC-LESIKAHDDAVNGLVAS--KGIVY-SASADGKIKAWGKELG  198 (353)
Q Consensus       129 ~~i~~~~~~~-~~l~~~~~dg-----~v~iwd~~~~~~-~~~~~~~~~~v~~i~~~--~~~l~-~~~~dg~i~iwd~~~~  198 (353)
                      .....+++++ ..|+.+...+     .+...+...... ...+. .......+++.  ++.|+ +-..++.|+.+|..++
T Consensus       182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g  260 (433)
T 4hw6_A          182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG  260 (433)
T ss_dssp             SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred             CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence            3567888888 3355554322     133333221110 01111 12334556663  34555 4445678999998766


Q ss_pred             Ccccccc-eeeeecc-CCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccce----eeeeec--cc---------cc
Q 018591          199 KSHCHSL-KGILEGH-KDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVRW----KLACET--KA---------HE  260 (353)
Q Consensus       199 ~~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~----~~~~~~--~~---------~~  260 (353)
                      .     . ....... .... ..++++|++++| ++-...+.|+.++........    ......  .+         .-
T Consensus       261 ~-----~~~~~~~~~~~~~~-~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~  334 (433)
T 4hw6_A          261 T-----LTEEEVMMDTKGSN-FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL  334 (433)
T ss_dssp             C-----EEEEEEECSCCSSC-EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred             e-----EEEEEeccCCCCCc-ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence            5     2 1111111 1222 569999999854 455567889998765321110    111100  00         00


Q ss_pred             eeEEEEEE-----------cCcEEEEecCCCeEEEEecCCCcceEEeccc-----cC----------CCcCeEEEEee-c
Q 018591          261 MAVLCVCL-----------VGEFLCSGSADKSIGIWKREAFGKLCRVGAI-----TG----------HEGPVKCLQAS-P  313 (353)
Q Consensus       261 ~~v~~~~~-----------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~----------h~~~v~~~~~~-~  313 (353)
                      .....+++           +++++++-..++.|+.++. ++. ...+.-.     .+          .-.....|+++ +
T Consensus       335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  412 (433)
T 4hw6_A          335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK  412 (433)
T ss_dssp             SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred             cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence            11223333           3666677677888999985 332 1111100     00          11247889999 5


Q ss_pred             CCCCCCeEEEEccCCCeEEEEEcC
Q 018591          314 NAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       314 ~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +    +.++++-..++.|+..+++
T Consensus       413 ~----g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          413 R----KCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             T----TEEEEEEGGGTEEEEEEEC
T ss_pred             C----CEEEEEeCCCCEEEEEecC
Confidence            5    7777777778889888765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.03  E-value=0.0031  Score=50.41  Aligned_cols=220  Identities=12%  Similarity=0.041  Sum_probs=123.7

Q ss_pred             CCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeeccccccceeeeecc
Q 018591           35 GKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMK  109 (353)
Q Consensus        35 dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (353)
                      ...|+..++....  ....+. ......++.|+  ++.| ++-...+.|..++++..........               
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~---------------   75 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV---------------   75 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE---------------
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc---------------
Confidence            3578999987653  222222 23456688887  3444 4555667888888876531111000               


Q ss_pred             cceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEE
Q 018591          110 QSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSA  184 (353)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~  184 (353)
                                      ........+++.+  + ++++-...+.|.+++++.......+.........+++.  .+.++.+
T Consensus        76 ----------------~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~t  139 (318)
T 3sov_A           76 ----------------SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT  139 (318)
T ss_dssp             ----------------ECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEE
T ss_pred             ----------------CCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence                            1112344566664  3 44455566789999986433222222334556788884  3455544


Q ss_pred             c--CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeeccccccceeeeeeccccce
Q 018591          185 S--ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGNVEIVRWKLACETKAHEM  261 (353)
Q Consensus       185 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  261 (353)
                      .  ..+.|...++....     ........-..+ +.++++|++..|+. -...+.|..+|+...... .+..   ....
T Consensus       140 d~~~~~~I~r~~~dG~~-----~~~~~~~~l~~P-nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~---~~~~  209 (318)
T 3sov_A          140 DWGEVPKIERAGMDGSS-----RFIIINSEIYWP-NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVK---GSLP  209 (318)
T ss_dssp             ECSSSCEEEEEETTSCS-----CEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC---SCCS
T ss_pred             ecCCCCEEEEEEcCCCC-----eEEEEECCCCCc-cEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEec---CCCC
Confidence            4  35778888876443     122222223345 89999996665554 455678999998753211 1211   1122


Q ss_pred             eEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEe
Q 018591          262 AVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       262 ~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      ....++.+ +.++.+-...+.|..++..+++....+
T Consensus       210 ~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             CEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            23344444 556666667889999998777643333

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.00  E-value=0.0083  Score=54.25  Aligned_cols=203  Identities=12%  Similarity=0.038  Sum_probs=112.3

Q ss_pred             cCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCc----eeeeeccccCcceEEEEEe--C-CeEEEEcCCCcEEEEeCC
Q 018591          127 HADSISCLTVYN--GLI-YSGSWDKTLKVWRVADL----KCLESIKAHDDAVNGLVAS--K-GIVYSASADGKIKAWGKE  196 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~--~-~~l~~~~~dg~i~iwd~~  196 (353)
                      ....+..+++++  +.| ++-...+.|+.+++...    .....+.........|++.  . +++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            344567888886  444 44455678888888642    2222232223445567762  3 366666778899999987


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-C-CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-S-DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFL  273 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l  273 (353)
                      ...     ...........+ ..|++.|.+.+|+... . .+.|...++...... .+. ........-+++.+. ++++
T Consensus       502 G~~-----~~~l~~~~l~~P-~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv-~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          502 GVK-----RKTLFRENGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV-TENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             SSS-----EEEEEECTTCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEE-CSSCSCEEEEEEETTTTEEE
T ss_pred             CCe-----EEEEEeCCCCCc-ceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEE-eCCCCCceEEEEecCCCeEE
Confidence            654     222333333445 8999999765555544 2 267888888654211 111 111112223444444 4444


Q ss_pred             EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          274 CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       274 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      ++=...+.|..+++...... .+..-.+.-....+|++..     +.++++-...+.|...+..+++.+.
T Consensus       574 waD~~~~~I~~~d~dG~~~~-~v~~~~~~l~~P~glav~~-----~~lYwtD~~~~~I~~~dk~tG~~~~  637 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRLTGSDVN  637 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEEEEET-----TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEeCCCCcEEEEecCCCceE-EEecCCCccCCCCEEEEeC-----CEEEEEECCCCEEEEEeCCCCcceE
Confidence            55456778999998754432 2221111223345677643     4555665667788888766665443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.99  E-value=0.0086  Score=54.15  Aligned_cols=235  Identities=11%  Similarity=0.068  Sum_probs=129.2

Q ss_pred             eEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEE-EecCCCcEEEEEcccCcc--ceeE
Q 018591           19 VSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVF-TAHQDSRIRVWKVSRSSE--NVFR   92 (353)
Q Consensus        19 v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~i~~w~~~~~~~--~~~~   92 (353)
                      -++.+.+ ..+|+.+. ...|+..++...+....+.. ...+.+|+++  .+.|+ +-...+.|+.++++....  ....
T Consensus       387 ~~C~~~~~~p~Ll~an-~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~  464 (791)
T 3m0c_C          387 KACKAVGSIAYLFFTN-RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT  464 (791)
T ss_dssp             CCCEETTSCCEEEEEC-BSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred             ceeeeccccccccccc-ccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence            3444444 23444333 35788888876655544443 4566788887  44444 545567788888765321  0000


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCc
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDD  169 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  169 (353)
                      .+                              .........|++..   +++++-...+.|.+.++........+...-.
T Consensus       465 vi------------------------------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~  514 (791)
T 3m0c_C          465 VI------------------------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS  514 (791)
T ss_dssp             EE------------------------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC
T ss_pred             EE------------------------------ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC
Confidence            11                              01223344666664   4555556678899999865443333333345


Q ss_pred             ceEEEEEeC--CeEEEEc-CC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeecc
Q 018591          170 AVNGLVASK--GIVYSAS-AD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGN  244 (353)
Q Consensus       170 ~v~~i~~~~--~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~  244 (353)
                      ....|++.+  +.|+.+. .. +.|...++....     ...........+ ..|++++.+..|+.+ ...+.|..+++.
T Consensus       515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-----~~~lv~~~l~~P-~GLavD~~~~~LYwaD~~~~~I~~~d~d  588 (791)
T 3m0c_C          515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVN  588 (791)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-----eEEEEeCCCCCc-eEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence            578898843  4554443 33 678888887554     222333333455 899999876666555 455688888886


Q ss_pred             ccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcce
Q 018591          245 VEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~  293 (353)
                      ..... .+... .........++.. +.++++-...+.|...+..+++..
T Consensus       589 G~~~~-~v~~~-~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          589 GGNRK-TILED-EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             SCSCE-EEEEC-TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCceE-EEecC-CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence            54221 22111 1111223455555 445555566788888887666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.99  E-value=0.0036  Score=49.79  Aligned_cols=202  Identities=13%  Similarity=0.077  Sum_probs=111.6

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC--c
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS--R   77 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~   77 (353)
                      ...+.+..+..+ .....++++  ++++++-..++.|..||... +....+.. ......++++  ++.+++.....  .
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~   96 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIP   96 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcce
Confidence            345556666543 457789996  67777666789999999765 33333332 3467788887  55444433222  3


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEE-EecCCCcEEEEEc
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIY-SGSWDKTLKVWRV  155 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~-~~~~dg~v~iwd~  155 (353)
                      |..++..+++.   ..+...+.                            ......++..+ ..++ +-..++.|..+|.
T Consensus        97 v~~~d~~~g~~---~~~~~~~~----------------------------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           97 VVSLVKSDGTV---ETLLTLPD----------------------------AIFLNGITPLSDTQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             EEEEECTTSCE---EEEEECTT----------------------------CSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             EEEEcCCCCeE---EEEEeCCC----------------------------ccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence            55556555441   11111110                            01112222233 3333 4345788989987


Q ss_pred             CCcee-ee---------eccccCcceEEEEEeCC-eEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEc
Q 018591          156 ADLKC-LE---------SIKAHDDAVNGLVASKG-IVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       156 ~~~~~-~~---------~~~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                      .+++. +.         .....-...+.+...++ .+++-...+.|..+++.. +...   ....+.. ...+ ..++++
T Consensus       146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~---~~~~~~~-~~~P-~gi~vd  220 (306)
T 2p4o_A          146 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG---EPEIFVE-QTNI-DDFAFD  220 (306)
T ss_dssp             TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBC---CCEEEEE-SCCC-SSEEEB
T ss_pred             CCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCC---ccEEEec-cCCC-CCeEEC
Confidence            65421 11         00011123455644444 455556678999999875 3210   1111111 1233 789999


Q ss_pred             CCCCeEEeecCCCcEEEeecc
Q 018591          224 DDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      ++|++.++....+.|.+++..
T Consensus       221 ~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          221 VEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCEEEEeCCCCeEEEECCC
Confidence            999887777778899999975

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.97  E-value=0.0002  Score=63.94  Aligned_cols=200  Identities=12%  Similarity=0.024  Sum_probs=109.2

Q ss_pred             ceEEEEEeC--CeEEEe-cCCCcEEEEEcCC----ceeeeeccccCcceEEEEE--eCC-eEEEEcCCCcEEEEeCCCCC
Q 018591          130 SISCLTVYN--GLIYSG-SWDKTLKVWRVAD----LKCLESIKAHDDAVNGLVA--SKG-IVYSASADGKIKAWGKELGK  199 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~--~~~-~l~~~~~dg~i~iwd~~~~~  199 (353)
                      .+..++|++  +.|+.+ ...+.|+.+++..    ......+.........|++  ..+ ++++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            455677876  555554 4557899998864    2222222111223445665  233 55555667889999987654


Q ss_pred             cccccceeeeeccCCceeeEEEEcCCCCeEEeecC--CCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEe
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS--DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSG  276 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~  276 (353)
                           ...........+ ..++++|.+.+|+....  .+.|..+++...... .+. ........-+++.++ ++++++-
T Consensus       487 -----~~~l~~~~~~~P-~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~-~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          487 -----RKTLFREQGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV-TENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             -----EEEECCCSSCCC-CCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EES-CSSCSSCCCEEECTTTCCEEEEE
T ss_pred             -----eEEEEeCCCCCc-ceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEE-eCCCCCccEEEEeccCCEEEEEe
Confidence                 222222222334 78999996555544432  267888877653211 111 111112223455554 4555666


Q ss_pred             cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      ...+.|..+++..... ..+............|++..     +.++++....+.|..++..+++.+.
T Consensus       559 ~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~-----~~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          559 SKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             TTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEET-----TEEEEECSTTTCEEEEETTTEEEEE
T ss_pred             cCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEEC-----CEEEEEeCCCCeEEEEEccCCCceE
Confidence            6778999999875332 22322212223344556654     3566666777899999876655433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.97  E-value=0.0042  Score=49.69  Aligned_cols=198  Identities=10%  Similarity=0.012  Sum_probs=115.1

Q ss_pred             ceEEEEEeC--CeE-EEecCCCcEEEEEcCCceee-eeccccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591          130 SISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCL-ESIKAHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       130 ~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      ....++|++  +.| .+-...+.|..+++...... ..+...-.....+++.  .+ .+++-...+.|.++++....   
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---  112 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---  112 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---
Confidence            456788886  444 44456678989988655321 1122222345566663  34 55566667889999987543   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCC
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSAD  279 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d  279 (353)
                        ...........+ ..+++.|.+..|+...  ..+.|...++...... .+. ........-.+++++ +.+.++=...
T Consensus       113 --~~~l~~~~~~~P-~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~-~~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          113 --RKVLFWQELDQP-RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-III-NSEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             --CEEEECSSCSSE-EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEE-CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             --EEEEEeCCCCCc-cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEE-ECCCCCccEEEEeccCCEEEEEECCC
Confidence              222222333445 8999999765555554  3577888887643211 111 111122233455554 4455555677


Q ss_pred             CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      +.|..+|++.... ..+.  .+.......+++..     +.++.+-...+.|..++..+++...
T Consensus       188 ~~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~-----~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          188 NFIHKSNLDGTNR-QAVV--KGSLPHPFALTLFE-----DILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             TEEEEEETTSCSC-EEEE--CSCCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CEEEEEcCCCCce-EEEe--cCCCCCceEEEEeC-----CEEEEEecCCCeEEEEECCCCCceE
Confidence            8999999875332 2222  22334567777754     4666666677889999987776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.94  E-value=0.0049  Score=50.25  Aligned_cols=147  Identities=13%  Similarity=0.033  Sum_probs=72.4

Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC------CCcEEEeeccccccceeeeeeccccc-
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS------DGFVMGWEGNVEIVRWKLACETKAHE-  260 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~-  260 (353)
                      ..+.+||..+.+-..   ...+....... .+++. -++++++.|+.      ...+..||+......|.......... 
T Consensus       168 ~~v~~yd~~~~~W~~---~~~~p~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSY---AGESPWYGTAG-AAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             CEEEEEETTTTEEEE---EEECSSCCCBS-CEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             ccEEEEeCCCCcEEE---CCCCCCCCccc-ccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence            478899988765211   11111111110 12222 25566666653      34577787733333444443332221 


Q ss_pred             -eeEEEEEEcCcEEEEecCC----------------------CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCC
Q 018591          261 -MAVLCVCLVGEFLCSGSAD----------------------KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVG  317 (353)
Q Consensus       261 -~~v~~~~~~~~~l~~~~~d----------------------g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  317 (353)
                       ....+...++.+++.|+.+                      ..+.+||+.+.+ ...+..+......-.++  ..+   
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~--~~~---  316 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGVSL--PWN---  316 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEEE--EET---
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccceeE--EeC---
Confidence             1223455678888887732                      257889988643 33443333222222222  234   


Q ss_pred             CCeEEEEccCCC------eEEEEEcCCCCCccccc
Q 018591          318 GGFLLYSGSLDK------SLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       318 ~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~  346 (353)
                       +++++.|+.++      .|.++++++++.....+
T Consensus       317 -~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          317 -NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             -TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             -CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence             78888888653      46666888887666544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.85  E-value=0.0069  Score=48.39  Aligned_cols=146  Identities=12%  Similarity=0.109  Sum_probs=77.1

Q ss_pred             eCCeEEEecCC--------CcEEEEEcCCceee--eeccccCcceEEEEEeCCeEEEEcC-C-----CcEEEEeCCCCCc
Q 018591          137 YNGLIYSGSWD--------KTLKVWRVADLKCL--ESIKAHDDAVNGLVASKGIVYSASA-D-----GKIKAWGKELGKS  200 (353)
Q Consensus       137 ~~~~l~~~~~d--------g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~l~~~~~-d-----g~i~iwd~~~~~~  200 (353)
                      ....++.|+.+        ..+.+||..+.+-.  ..+......-.++...+..++.|+. +     ..+.+||+.+.+-
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            33556666632        46889998775432  2222222222223334556666665 2     4688999887652


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEE
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCS  275 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~  275 (353)
                      ...   ..+......  .+++. -+++.++.|+.++     .+.+||+.+.  .+..............++..++++++.
T Consensus       178 ~~~---~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~  249 (315)
T 4asc_A          178 KEL---APMQTARSL--FGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSLVGTLYAI  249 (315)
T ss_dssp             EEC---CCCSSCCBS--CEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred             EEC---CCCCCchhc--eEEEE-ECCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEECCEEEEE
Confidence            111   111111111  12222 2567777776654     4788888776  344443333333333445567888888


Q ss_pred             ecCCC--------------eEEEEecCCC
Q 018591          276 GSADK--------------SIGIWKREAF  290 (353)
Q Consensus       276 ~~~dg--------------~i~iw~~~~~  290 (353)
                      |+.++              .+.+||+.+.
T Consensus       250 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          250 GGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             CCccccCcCCccccccccCcEEEecCCCC
Confidence            87642              4678888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.85  E-value=0.00033  Score=62.62  Aligned_cols=221  Identities=11%  Similarity=0.057  Sum_probs=115.4

Q ss_pred             CCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591           35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS  111 (353)
Q Consensus        35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (353)
                      .+.|+..++.+.+....+.. ...+.+++|+  ++.|+.+ ...+.|+.++++....... ....+              
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-~~~~i--------------  448 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVI--------------  448 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-CCCBC--------------
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-eEEEE--------------
Confidence            35788888876655444333 2345677777  4555544 4557888888765210000 00000              


Q ss_pred             eeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCeEEEEc-
Q 018591          112 NYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGIVYSAS-  185 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~l~~~~-  185 (353)
                                   .........|++.+  + ++++-...+.|.++++........+.........|++.  .+.|+.+. 
T Consensus       449 -------------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~  515 (699)
T 1n7d_A          449 -------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW  515 (699)
T ss_dssp             -------------CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred             -------------eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc
Confidence                         00011223455553  3 44444567889999986544333333223445677773  34444433 


Q ss_pred             CC-CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccceeeeeeccccceeE
Q 018591          186 AD-GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAV  263 (353)
Q Consensus       186 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v  263 (353)
                      .. +.|..+++....     ...........+ ..|+++|++..| ++-...+.|..+++...... .+. .........
T Consensus       516 ~~~~~I~~~~~dG~~-----~~~l~~~~l~~P-nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~-~~~~~~~~P  587 (699)
T 1n7d_A          516 GTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TIL-EDEKRLAHP  587 (699)
T ss_dssp             SSSCCEEBCCSSSCC-----CCEESCSSCSSC-CCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EEC-CCSSSCSSC
T ss_pred             CCCCeEEEEeCCCCC-----eeEEEeCCCCCc-cEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEE-ecCCcCCCc
Confidence            22 678887776443     111112222334 889999875544 55556778999998653211 111 111111122


Q ss_pred             EEEEEc-CcEEEEecCCCeEEEEecCCCcc
Q 018591          264 LCVCLV-GEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       264 ~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      ..++++ +.++++....+.|..++..+++.
T Consensus       588 ~glavd~~~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          588 FSLAVFEDKVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             CCCEEETTEEEEECSTTTCEEEEETTTEEE
T ss_pred             eEeEEECCEEEEEeCCCCeEEEEEccCCCc
Confidence            233344 45555666778999999877663

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.84  E-value=0.0084  Score=50.27  Aligned_cols=196  Identities=8%  Similarity=-0.066  Sum_probs=109.7

Q ss_pred             ceEEEEEeC----CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCC-----cEEEEeCCCCC
Q 018591          130 SISCLTVYN----GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADG-----KIKAWGKELGK  199 (353)
Q Consensus       130 ~i~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg-----~i~iwd~~~~~  199 (353)
                      ....+++++    +.|+.+...+.|+.+|..+++...... .......+++ .++.|+.+...+     .+...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            345788885    567776665889999987776654443 3456788888 333355444321     23333332221


Q ss_pred             cccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEEec
Q 018591          200 SHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCSGS  277 (353)
Q Consensus       200 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~  277 (353)
                       .   ....+. ....+ ..++++| ++.+.++-..++.|+.++..++................-.+++++++ ++++-.
T Consensus       219 -~---~~~~~~-~~~~P-~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          219 -T---ERLSLC-NARGA-KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             -C---CEEEEE-ECSSB-CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             -e---cccccc-ccCCC-CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence             0   001111 22333 7789999 67766676678889999987553211111111111112356666777 555556


Q ss_pred             CCCeEEEEecCC--Ccc--eEEec-cc--cC---------CCcCeEEEEe---------ecCCCCCCeEEEEccCCCeEE
Q 018591          278 ADKSIGIWKREA--FGK--LCRVG-AI--TG---------HEGPVKCLQA---------SPNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       278 ~dg~i~iw~~~~--~~~--~~~~~-~~--~~---------h~~~v~~~~~---------~~~~~~~~~~l~s~~~dg~i~  332 (353)
                      ..+.|+.++.+.  +..  ...+. ..  .+         .-.....+++         .++    +.++++-...+.|+
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~----g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE----YDFYFCDRDSHTVR  368 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC----EEEEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC----CcEEEEECCCCEEE
Confidence            678999988653  210  00111 00  00         1123677888         555    77777777788888


Q ss_pred             EEEc
Q 018591          333 VWWV  336 (353)
Q Consensus       333 iw~~  336 (353)
                      .++.
T Consensus       369 ~~~~  372 (433)
T 4hw6_A          369 VLTP  372 (433)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.84  E-value=0.0071  Score=48.30  Aligned_cols=175  Identities=10%  Similarity=0.039  Sum_probs=90.3

Q ss_pred             EEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC--------CcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          150 LKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD--------GKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       150 v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                      +..||..+.+-..  .+......-....+.+..++.|+.+        ..+.+||..+.+-..   ...+......  .+
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~~--~~  143 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPLPYVVYG--HT  143 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE---CCCCSSCCBS--CE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE---CCCCCCcccc--ee
Confidence            7788887755322  2211111112222244455666632        458889988765211   1111111111  12


Q ss_pred             EEEcCCCCeEEeecC-C-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-----eEEEEecC
Q 018591          220 VVVSDDGKWVYGGGS-D-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-----SIGIWKRE  288 (353)
Q Consensus       220 ~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iw~~~  288 (353)
                      ++. -+++.++.|+. +     ..+.+||..+.  .+..............+...++++++.|+.++     .+.+||+.
T Consensus       144 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          144 VLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             EEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETT
T ss_pred             EEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECC
Confidence            222 35566777765 2     46888998876  33333333333333344555788888887654     58889987


Q ss_pred             CCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCC--------------eEEEEEcCCC
Q 018591          289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK--------------SLRVWWVSKQ  339 (353)
Q Consensus       289 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg--------------~i~iw~~~~~  339 (353)
                      +. ....+..+.........+.+  +    +++++.|+.++              .+.+||+++.
T Consensus       221 ~~-~W~~~~~~p~~r~~~~~~~~--~----~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          221 DN-KWAPFEAFPQERSSLSLVSL--V----GTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             TT-EEEEECCCSSCCBSCEEEEE--T----TEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             CC-eEEECCCCCCcccceeEEEE--C----CEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            74 33344333222222222222  3    67888887642              3677887765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.83  E-value=0.0056  Score=46.90  Aligned_cols=200  Identities=11%  Similarity=0.084  Sum_probs=118.5

Q ss_pred             eeeCccCceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccC-ceeeEEEEEe--CCEEEEecCCCcEEEEEcc
Q 018591           11 VLSGHVGSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV--GNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~   84 (353)
                      .+.|-.+.+..++++   +.++++...++.|...|.. ++.++.+... ....-.|++.  +.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            355666789999996   4466667788999999987 8888776421 2456677776  4444554466788888887


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC---ce
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD---LK  159 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~---~~  159 (353)
                      ....  ...+......                    . ...........+++++  +.|+++.......+|.+..   ..
T Consensus       100 ~~~~--i~~~~~~~~~--------------------~-~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~  156 (255)
T 3qqz_A          100 PNSE--VKILKKIKIP--------------------L-QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN  156 (255)
T ss_dssp             TTCC--EEEEEEEECC--------------------C-SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred             CCCe--eeeeeeeccc--------------------c-ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence            6542  1111111000                    0 0002455678999998  5777776665556665531   11


Q ss_pred             eeeec-------cccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeecc---------CCceeeEE
Q 018591          160 CLESI-------KAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGH---------KDVSLNSV  220 (353)
Q Consensus       160 ~~~~~-------~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~~~v~~~  220 (353)
                      .+..+       ..+...+.++++++.   +++....+..|..+|.....      ...+.-.         ...+ ..+
T Consensus       157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~------~~~~~L~~g~~~l~~~~~qp-EGi  229 (255)
T 3qqz_A          157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV------IGEMSLTKGSRGLSHNIKQA-EGV  229 (255)
T ss_dssp             CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECSTTGGGCSSCCCSE-EEE
T ss_pred             ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE------EEEEEcCCccCCcccccCCC-Cee
Confidence            11111       112345678888443   66677777889999976542      2222111         1234 889


Q ss_pred             EEcCCCCeEEeecCCCcEEEee
Q 018591          221 VVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       221 ~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      +|.++|+..++ ++-+.++.|.
T Consensus       230 a~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          230 AMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EECTTCCEEEE-ETTTEEEEEE
T ss_pred             EECCCCCEEEE-cCCceEEEEE
Confidence            99999985555 5556555554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.72  E-value=0.011  Score=46.89  Aligned_cols=147  Identities=8%  Similarity=0.034  Sum_probs=84.9

Q ss_pred             CCcEEEEEcC---Cceeeeecc--c-----------cCcceEEEEE--eCCeEEEEcCC-CcEEEEeCCCCCccccccee
Q 018591          147 DKTLKVWRVA---DLKCLESIK--A-----------HDDAVNGLVA--SKGIVYSASAD-GKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       147 dg~v~iwd~~---~~~~~~~~~--~-----------~~~~v~~i~~--~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~  207 (353)
                      +..|..+|+.   +++.+....  .           -......++.  .++..++++.. +.|...+........... .
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~-~  177 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW-E  177 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE-C
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee-c
Confidence            6789999998   776654432  1           1124778888  34466767777 777777766443110000 0


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeee-------eccccceeEEEEEEcCcE-EEEecCC
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLAC-------ETKAHEMAVLCVCLVGEF-LCSGSAD  279 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-l~~~~~d  279 (353)
                      ........-.+.++++|+++.|++....|.+..+|+.... ......       .+. ....+.....+|+. +++...+
T Consensus       178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv-~~~v~~~~~G~~~~~~-~~dgilp~~~~G~vllV~~~~~  255 (334)
T 2p9w_A          178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY-AWPEPVKINGDFGTLS-GTEKIVTVPVGNESVLVGARAP  255 (334)
T ss_dssp             CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS-CCCEECEESSCCCCCT-TEEEEEEEEETTEEEEEEEETT
T ss_pred             CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc-ceeecccccCCccccc-CcccccccccCCEEEEEEcCCC
Confidence            0001111113789999999988888779999999988431 101111       111 12223444557887 5555567


Q ss_pred             CeEEEEecCCCcceEEe
Q 018591          280 KSIGIWKREAFGKLCRV  296 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~  296 (353)
                      +.+.+.+.+..+....+
T Consensus       256 ~~~~l~S~DgW~sa~~~  272 (334)
T 2p9w_A          256 YAISFRSWDNWKSANIK  272 (334)
T ss_dssp             EEEEEECSSTTSEEEEE
T ss_pred             CEEEEECCCCcceeEEe
Confidence            77777776665543333

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.71  E-value=0.012  Score=47.23  Aligned_cols=195  Identities=10%  Similarity=0.046  Sum_probs=97.4

Q ss_pred             CCceEEEEEeCCeEEEecCCCcEEEEEcCCce---eeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccc
Q 018591          128 ADSISCLTVYNGLIYSGSWDKTLKVWRVADLK---CLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       128 ~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      ...+.++.+.++.+++++.++.|..- .+.++   .+.....+...+..+.+ .++.++.++.+|.|..- ...++ .  
T Consensus        79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~-t--  153 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGK-N--  153 (327)
T ss_dssp             CCEEEEEEEETTEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTS-S--
T ss_pred             CccEEEEEecCCeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCC-C--
Confidence            34677888887555555666755442 22232   22221123345677776 56655555566654321 12222 0  


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCe
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKS  281 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~  281 (353)
                       -.......... +..+++.|++.+++.+...+..+-.|-. + ..+.....  .....+..+.+  ++..+ .++.+|.
T Consensus       154 -W~~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G-~tW~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~G~  226 (327)
T 2xbg_A          154 -WQALVQEAIGV-MRNLNRSPSGEYVAVSSRGSFYSTWEPG-Q-TAWEPHNR--TTSRRLHNMGFTPDGRLW-MIVNGGK  226 (327)
T ss_dssp             -EEEEECSCCCC-EEEEEECTTSCEEEEETTSSEEEEECTT-C-SSCEEEEC--CSSSCEEEEEECTTSCEE-EEETTTE
T ss_pred             -CEEeecCCCcc-eEEEEEcCCCcEEEEECCCcEEEEeCCC-C-CceeECCC--CCCCccceeEECCCCCEE-EEeCCce
Confidence             11111222233 4889999998888776544433333321 1 12222211  22334445544  35544 5556788


Q ss_pred             EEEEecCCCcceEEeccc-cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCC
Q 018591          282 IGIWKREAFGKLCRVGAI-TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       282 i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~  340 (353)
                      +++.+.+.++....+... ..+...+.++.+.++    +.+++.+. +|.| ++....++
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~----~~~~~~g~-~g~i-~~S~DgG~  280 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP----NEVWLAGG-AGAL-LCSQDGGQ  280 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS----SCEEEEES-TTCE-EEESSTTS
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCC----CEEEEEeC-CCeE-EEeCCCCc
Confidence            877643333332222211 112345889999887    77777665 6666 34444443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.0027  Score=50.81  Aligned_cols=194  Identities=9%  Similarity=0.077  Sum_probs=103.6

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccC-ceeeEEEEEe----CCEEEEe--cCCCcEEEEEcccCccceeEEeeccc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHG-DGSVKAVVTV----GNKVFTA--HQDSRIRVWKVSRSSENVFRLVDTLP   98 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~----~~~l~s~--~~dg~i~~w~~~~~~~~~~~~~~~~~   98 (353)
                      +.+++.++.||.|.-.|.++|+....++.. ..++....-.    +..++.+  +.||.|..++.+++.......+..+ 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l-   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL-   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH-
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc-
Confidence            568999999999999999999999998764 1222221111    2234433  6899999999876632111110000 


Q ss_pred             cccceeeeecccceeEeecccceeeeeecCCceEE---EEE-------eCCeEEEecCCCcEEEEEcCCceeeeeccccC
Q 018591           99 TTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC---LTV-------YNGLIYSGSWDKTLKVWRVADLKCLESIKAHD  168 (353)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~-------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  168 (353)
                                                 -...++..   ...       ..+.+++|+.+|.+...|+.+|+.+.++....
T Consensus        89 ---------------------------v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~  141 (339)
T 2be1_A           89 ---------------------------VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGS  141 (339)
T ss_dssp             ---------------------------HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTC
T ss_pred             ---------------------------eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCC
Confidence                                       01111111   001       23678999999999999999999998885321


Q ss_pred             --cc-----eEEEE-------EeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc--eeeEEEEcCCCCeEEee
Q 018591          169 --DA-----VNGLV-------ASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV--SLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       169 --~~-----v~~i~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~  232 (353)
                        ..     ..|..       ..++.++.+..+..+.+.+ ++++ ...............  .......+.++.+ +.+
T Consensus       142 ~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~  218 (339)
T 2be1_A          142 KNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAP  218 (339)
T ss_dssp             BCC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEE
T ss_pred             CcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEE
Confidence              10     01111       1234666666666666666 3332 111111111111000  0000011223555 446


Q ss_pred             cCCCcEEEeeccccccce
Q 018591          233 GSDGFVMGWEGNVEIVRW  250 (353)
Q Consensus       233 ~~dg~i~i~d~~~~~~~~  250 (353)
                      +.||.|.-+|..++...|
T Consensus       219 ~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          219 FRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             ETTTEEEEECSTTCCEEE
T ss_pred             CCCCEEEEEECCCCcEEE
Confidence            777888888777765444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.65  E-value=0.015  Score=46.58  Aligned_cols=189  Identities=13%  Similarity=0.272  Sum_probs=109.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe------CC---EEEEe-cC--CCcEEEEEcccCccceeEE
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV------GN---KVFTA-HQ--DSRIRVWKVSRSSENVFRL   93 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~------~~---~l~s~-~~--dg~i~~w~~~~~~~~~~~~   93 (353)
                      ..+++.....+-+.+||+ +|+.++.+..  +.++.+...      +.   ++++. -.  +++|.+|+++..... ...
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            346666677889999999 8999988864  334444332      22   22333 33  578999988532211 112


Q ss_pred             eecc--ccccceeeeecccceeEeecccceeeeeecCCceEEEEE--eC--C--eEEEecCCCcEEEEEcC-------Cc
Q 018591           94 VDTL--PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV--YN--G--LIYSGSWDKTLKVWRVA-------DL  158 (353)
Q Consensus        94 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~--~l~~~~~dg~v~iwd~~-------~~  158 (353)
                      +...  +..                         .....+..+++  ++  +  ++++...+|.+..|++.       +.
T Consensus       116 i~~~~~pv~-------------------------t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~  170 (355)
T 3amr_A          116 MTDPDHPIA-------------------------TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG  170 (355)
T ss_dssp             CSCTTSCEE-------------------------CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE
T ss_pred             ccccccCcC-------------------------CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc
Confidence            1111  100                         00133444555  44  2  58888889999999882       34


Q ss_pred             eeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeee-ccCCceeeEEEE--cCCCC-eEEee
Q 018591          159 KCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILE-GHKDVSLNSVVV--SDDGK-WVYGG  232 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~~-~l~~~  232 (353)
                      +.++++.. .+.+..+...  .+.|+.+-.+..|..++.+.............. ++-..-+..|++  .++++ +|+++
T Consensus       171 ~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS  249 (355)
T 3amr_A          171 KKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS  249 (355)
T ss_dssp             EEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred             eEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence            66777754 4567777774  458999998877766665422111111222221 222222377777  45555 55555


Q ss_pred             c-CCCcEEEeecc
Q 018591          233 G-SDGFVMGWEGN  244 (353)
Q Consensus       233 ~-~dg~i~i~d~~  244 (353)
                      + .+....+||..
T Consensus       250 sQG~~s~~Vydr~  262 (355)
T 3amr_A          250 SQGNSSYAIYDRQ  262 (355)
T ss_dssp             EGGGTEEEEEESS
T ss_pred             cCCCCEEEEEECC
Confidence            5 67799999986

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.63  E-value=0.009  Score=47.33  Aligned_cols=162  Identities=10%  Similarity=0.131  Sum_probs=97.3

Q ss_pred             CcceEEEEEeC--CeEEEEc-CCCcEEEEeCCCCCccccccee-eee-----ccCCceeeEEEE---cCCCCeEEeec--
Q 018591          168 DDAVNGLVASK--GIVYSAS-ADGKIKAWGKELGKSHCHSLKG-ILE-----GHKDVSLNSVVV---SDDGKWVYGGG--  233 (353)
Q Consensus       168 ~~~v~~i~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~-----~~~~~~v~~~~~---~~~~~~l~~~~--  233 (353)
                      .....++.|.+  +.++.++ ..++|..||...+.     ... .+.     +.....+..+.+   .|+++++++..  
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-----~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-----HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-----EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-----EEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            33445778843  5555555 78999999987554     111 122     111223478999   68877777543  


Q ss_pred             -----------CCCcEEEeecc---ccccceeeeee--ccc-------cceeEEEEEE--cCcEEEEecCC-CeEEEEec
Q 018591          234 -----------SDGFVMGWEGN---VEIVRWKLACE--TKA-------HEMAVLCVCL--VGEFLCSGSAD-KSIGIWKR  287 (353)
Q Consensus       234 -----------~dg~i~i~d~~---~~~~~~~~~~~--~~~-------~~~~v~~~~~--~~~~l~~~~~d-g~i~iw~~  287 (353)
                                 .+..+..||+.   +++..+.....  ..+       .......+..  +|+..++++.. +.|...+.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       25779999998   55433322211  001       1123445555  48888888877 88777776


Q ss_pred             CCCcceEEec-cc--cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          288 EAFGKLCRVG-AI--TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       288 ~~~~~~~~~~-~~--~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      .... ..... ..  .......+.|++.|+    +..|++...+|.+..+|+.+.
T Consensus       167 dG~~-~~~~~~~~~~~~~~~G~nGIv~~pd----g~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          167 DGKT-VSTFAWESGNGGQRPGYSGITFDPH----SNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             TSCC-EEEEEECCCCSSSCCSCSEEEEETT----TTEEEEESSSSSEEEEECSSS
T ss_pred             CCCE-EeeeeecCCCcccccCcceEEEeCC----CCEEEEEcCCCeEEEEcCCCC
Confidence            5432 11111 11  111224679999999    877777766999999998853

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.61  E-value=0.012  Score=53.34  Aligned_cols=192  Identities=12%  Similarity=0.063  Sum_probs=100.6

Q ss_pred             ceEEEEEe-C--CeEEEec-CCC----cEEEEEcCCc-eeeee-ccccCcceEEEEEe-CC-eEEEEcCC-----CcEEE
Q 018591          130 SISCLTVY-N--GLIYSGS-WDK----TLKVWRVADL-KCLES-IKAHDDAVNGLVAS-KG-IVYSASAD-----GKIKA  192 (353)
Q Consensus       130 ~i~~~~~~-~--~~l~~~~-~dg----~v~iwd~~~~-~~~~~-~~~~~~~v~~i~~~-~~-~l~~~~~d-----g~i~i  192 (353)
                      .+....|+ |  ++|+.+. .+|    .|+++|+.++ +.+.. +.   .....+.|+ ++ .|+....+     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67788999 8  5555432 222    5999999988 63221 11   123467783 33 55555544     25788


Q ss_pred             EeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec---CCCcEEEeeccccccceeeeeeccccceeEEEEE-E
Q 018591          193 WGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG---SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC-L  268 (353)
Q Consensus       193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~-~  268 (353)
                      +++.++...   ....+..........+.|+|||++|+...   ....|.++|+.++..................... .
T Consensus       252 ~~lgt~~~~---~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          252 HVMGKLQSE---DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             EETTSCGGG---CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             EECCCCchh---cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            888765411   11222222222236789999999887654   2346788888765211100111122223334444 2


Q ss_pred             cCcEEE-EecCC----CeEEEEecCCCcceEEecc-ccCCCc--CeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          269 VGEFLC-SGSAD----KSIGIWKREAFGKLCRVGA-ITGHEG--PVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       269 ~~~~l~-~~~~d----g~i~iw~~~~~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      .++.|+ ....+    ..|..+++.+....   .. +..|..  .+..+.+..     +.++++...||..++|-
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~---~~~li~~~~~~~l~~~~~~~-----~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDW---SHVLVDHSEDVFMESIAVRS-----NYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCC---CCEEECCCSSEEEEEEEECS-----SEEEEEEEETTEEEEEE
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccc---eeeEECCCCCcEEEEEEEEC-----CEEEEEEEeCCEEEEEE
Confidence            355444 43333    36777777643211   12 222333  345555542     56777778888655543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.58  E-value=0.019  Score=45.87  Aligned_cols=175  Identities=11%  Similarity=0.057  Sum_probs=88.9

Q ss_pred             EEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcCC-------CcEEEEeCCCCCcccccceeeeeccCCceeeEE
Q 018591          150 LKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASAD-------GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSV  220 (353)
Q Consensus       150 v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~  220 (353)
                      +..||..+.+-..  .+......-......+..++.|+.+       ..+.+||..+.+-...   ..+......  .++
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~--~~~  154 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV---KNLPIKVYG--HNV  154 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE---CCCSSCEES--CEE
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC---CCCCCcccc--cEE
Confidence            7788887654322  2221111222223344466666653       2477888877652111   111111111  122


Q ss_pred             EEcCCCCeEEeecC------CCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCC
Q 018591          221 VVSDDGKWVYGGGS------DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREA  289 (353)
Q Consensus       221 ~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~  289 (353)
                      +. .++++++.|+.      -..+.+||..+..  +..............+...++.+++.|+.+     ..+.+||+.+
T Consensus       155 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          155 IS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EE-ETTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCC
Confidence            22 45666677664      2358899988763  333333332222233445578888887653     3577899877


Q ss_pred             CcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCC--------------CeEEEEEcCCC
Q 018591          290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD--------------KSLRVWWVSKQ  339 (353)
Q Consensus       290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~d--------------g~i~iw~~~~~  339 (353)
                      .+ ...+..+.........+.  .+    +++++.|+.+              ..+.+||+++.
T Consensus       232 ~~-W~~~~~~p~~r~~~~~~~--~~----~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          232 NK-WEVMTEFPQERSSISLVS--LA----GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             CC-EEECCCCSSCCBSCEEEE--ET----TEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             Ce-EEECCCCCCcccceEEEE--EC----CEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence            43 334433332222222222  23    6788888754              35777887764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.56  E-value=0.045  Score=49.70  Aligned_cols=269  Identities=10%  Similarity=0.167  Sum_probs=146.9

Q ss_pred             cCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeE
Q 018591           16 VGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFR   92 (353)
Q Consensus        16 ~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~   92 (353)
                      ...|++|.-+ ..+|..|..+| +..||-...+..... ......|.++..+ ...|..++.+| +..||..+..     
T Consensus        21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~-----   93 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADR-----   93 (758)
T ss_dssp             CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTE-----
T ss_pred             cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCE-----
Confidence            4679999987 55777788877 566774332211100 1123468888776 66788887765 6788876643     


Q ss_pred             EeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeecc----ccC
Q 018591           93 LVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIK----AHD  168 (353)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~  168 (353)
                      ...  +..                         .....|.++....+.|..++.+ -+..+|..+++......    ...
T Consensus        94 f~~--~~~-------------------------~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~  145 (758)
T 3ott_A           94 YEQ--PET-------------------------DFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPN  145 (758)
T ss_dssp             ECC--CSC-------------------------CCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSC
T ss_pred             EEC--ccc-------------------------CCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCC
Confidence            100  000                         1122466665555677777766 58888876654332200    123


Q ss_pred             cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccc
Q 018591          169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI  247 (353)
Q Consensus       169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  247 (353)
                      ..|.++.. .++.+..++.+ .|..+|..+.+....... .........|.++...+++..|..|+. +-+..+|..++.
T Consensus       146 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~-~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~  222 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLP-VHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ  222 (758)
T ss_dssp             SCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCC-CCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred             CeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCC-CccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence            46788877 46677777654 577888766541100000 000011223577888777766666664 348888877652


Q ss_pred             cceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecCCCcceEEeccc-----cCCCcCeEEEEeecCCCCCCeE
Q 018591          248 VRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAFGKLCRVGAI-----TGHEGPVKCLQASPNAVGGGFL  321 (353)
Q Consensus       248 ~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~  321 (353)
                      ..  ....  .....+.++..+ ...|..|+.+ -+.+++..+.+. ..+...     .-....|.++....+    |.+
T Consensus       223 ~~--~~~~--l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~----g~l  292 (758)
T 3ott_A          223 IK--QTEA--FHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQE----HNI  292 (758)
T ss_dssp             EE--EEEE--EEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTT----CCE
T ss_pred             EE--eccC--CCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCC----CCE
Confidence            11  1111  123457777776 3455556654 478888766432 122110     012345888887766    554


Q ss_pred             EEEccCCCeEEEE
Q 018591          322 LYSGSLDKSLRVW  334 (353)
Q Consensus       322 l~s~~~dg~i~iw  334 (353)
                      -+ |+..| +.+.
T Consensus       293 Wi-GT~~G-l~~~  303 (758)
T 3ott_A          293 WL-GTDYG-ISLS  303 (758)
T ss_dssp             EE-EESSS-EEEE
T ss_pred             EE-EeCCc-cccc
Confidence            33 33446 4433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.55  E-value=0.01  Score=49.77  Aligned_cols=154  Identities=6%  Similarity=-0.112  Sum_probs=90.3

Q ss_pred             ceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CC----cEEEe
Q 018591          170 AVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DG----FVMGW  241 (353)
Q Consensus       170 ~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~i~  241 (353)
                      ....+++++   +.|+.+...+.|+.+|+....     ... +......+ ..+++++++++|+++.. ++    .+..+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-----v~~-~~~~~~~P-~~ia~d~~G~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-----VST-VYSGLSKV-RTICWTHEADSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-----EEE-EECCCSCE-EEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-----EEE-EecCCCCc-ceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence            446777753   466666655889999988765     222 22233445 89999999996655543 22    23334


Q ss_pred             eccccccceeeeeeccccceeEEEEEE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe
Q 018591          242 EGNVEIVRWKLACETKAHEMAVLCVCL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF  320 (353)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  320 (353)
                      +.............  .....-.++.+ ++.++++-..++.|+.++...+... .+..... ......++|+|+    ++
T Consensus       211 ~~~g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~-~~~P~gia~~pd----G~  282 (430)
T 3tc9_A          211 TRESGFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQD-SGWEFHIQFHPS----GN  282 (430)
T ss_dssp             EGGGTSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSS-SSCCEEEEECTT----SS
T ss_pred             eCCCceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCC-CCcceeEEEcCC----CC
Confidence            43222110011111  11122344566 4677777777889999998865421 2222221 245788999999    88


Q ss_pred             -EEEEccCCCeEEEEEcCC
Q 018591          321 -LLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       321 -~l~s~~~dg~i~iw~~~~  338 (353)
                       ++++-...+.|..++...
T Consensus       283 ~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          283 YAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEEETTTTEEEEEEEET
T ss_pred             EEEEEECCCCEEEEEeCCc
Confidence             555556678899987653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.42  E-value=0.031  Score=44.59  Aligned_cols=146  Identities=14%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             eCCeEEEecCC-------CcEEEEEcCCceeee--eccccCcceEEEEEeCCeEEEEcC------CCcEEEEeCCCCCcc
Q 018591          137 YNGLIYSGSWD-------KTLKVWRVADLKCLE--SIKAHDDAVNGLVASKGIVYSASA------DGKIKAWGKELGKSH  201 (353)
Q Consensus       137 ~~~~l~~~~~d-------g~v~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~l~~~~~------dg~i~iwd~~~~~~~  201 (353)
                      ....++.|+.+       ..+.+||..+.+-..  .+......-.++...+..++.|+.      -..+.+||+.+.+-.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~  188 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK  188 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence            33556666643       357888887654322  222111111222234445556653      235889998876521


Q ss_pred             cccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEe
Q 018591          202 CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSG  276 (353)
Q Consensus       202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  276 (353)
                      ..   ..+......  .+++. -+++.++.|+.+     ..+.+||+.+.  .+...............+..++.+++.|
T Consensus       189 ~~---~~~p~~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~G  260 (318)
T 2woz_A          189 DL---APMKTPRSM--FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQERSSISLVSLAGSLYAIG  260 (318)
T ss_dssp             EE---CCCSSCCBS--CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             EC---CCCCCCccc--ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCcccceEEEEECCEEEEEC
Confidence            11   111111111  12222 256677777643     34678888775  3444333333333334455677888877


Q ss_pred             cCC--------------CeEEEEecCCC
Q 018591          277 SAD--------------KSIGIWKREAF  290 (353)
Q Consensus       277 ~~d--------------g~i~iw~~~~~  290 (353)
                      +.+              ..+.+||+.+.
T Consensus       261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          261 GFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             CBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             CeeccCCCCceeccceeeeEEEEeCCCC
Confidence            754              35778888764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=0.056  Score=45.76  Aligned_cols=210  Identities=10%  Similarity=0.077  Sum_probs=109.8

Q ss_pred             ceEEEEE-------eC--CeEEEecCCC-------cEEEEEcCC-ceee-----eeccccCcceEEEEEeC--C-eEEEE
Q 018591          130 SISCLTV-------YN--GLIYSGSWDK-------TLKVWRVAD-LKCL-----ESIKAHDDAVNGLVASK--G-IVYSA  184 (353)
Q Consensus       130 ~i~~~~~-------~~--~~l~~~~~dg-------~v~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~--~-~l~~~  184 (353)
                      ....++|       ++  +.|+++...+       .|.+++... +...     ..+.. -.....++.++  + ++++-
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd  265 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNS  265 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEE
Confidence            5778888       76  5466555443       266665333 1221     12211 12234566633  3 55566


Q ss_pred             cCCCcEEEEeCC-------CCCc-cc---cc---ceeeeec-cCCceeeEEEEcCCCCeE-EeecCCCcEEEeecccccc
Q 018591          185 SADGKIKAWGKE-------LGKS-HC---HS---LKGILEG-HKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIV  248 (353)
Q Consensus       185 ~~dg~i~iwd~~-------~~~~-~~---~~---~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~  248 (353)
                      ..++.|..+|+.       ++.. .+   ..   ....+.. ....+ ..++|+|+++.| ++-.....|+.++......
T Consensus       266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p-~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE-FQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC-EEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCc-eEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            677889999987       4441 00   00   0011222 22334 789999999954 4445677888866543211


Q ss_pred             ce----eeeee--ccc------------cceeEEEEE-------EcCcEEEEecCCCeEEEEecCCCcceEEeccc----
Q 018591          249 RW----KLACE--TKA------------HEMAVLCVC-------LVGEFLCSGSADKSIGIWKREAFGKLCRVGAI----  299 (353)
Q Consensus       249 ~~----~~~~~--~~~------------~~~~v~~~~-------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----  299 (353)
                      ..    .+...  ..+            ++....++.       .++.++++=..++.|+.++. ++. ...+.--    
T Consensus       345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~  422 (496)
T 3kya_A          345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGAST  422 (496)
T ss_dssp             EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTH
T ss_pred             eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccc
Confidence            10    11111  000            111133343       34567777777889999984 332 2122100    


Q ss_pred             -------cC----------CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          300 -------TG----------HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       300 -------~~----------h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                             .+          .-.....|+++++   ++.++++=..+..|+.++++...+.....
T Consensus       423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~---~g~lyVaD~~N~rIrki~~~~~~~~~~~~  483 (496)
T 3kya_A          423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDV---KEMFYVHDQVGHTIRTISMEQEENVAGDE  483 (496)
T ss_dssp             HHHHSCSCCCCCEETTTTCCCSSEEEEEEETT---TTEEEEEETTTTEEEEEEECCCC------
T ss_pred             cccCccccccCCCCchhhhhcCCCcEEEEECC---CCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence                   01          1124678999984   16777777778899999999887776544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.34  E-value=0.0098  Score=53.84  Aligned_cols=155  Identities=14%  Similarity=0.012  Sum_probs=87.2

Q ss_pred             ceEEEEEe-CC--eEE-EEcCCC----cEEEEeCCCC-CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-----
Q 018591          170 AVNGLVAS-KG--IVY-SASADG----KIKAWGKELG-KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-----  235 (353)
Q Consensus       170 ~v~~i~~~-~~--~l~-~~~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  235 (353)
                      .+....|+ ++  .++ +...+|    .|+++|+.++ +.    +...+..    ....++|+||++.|+....+     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~----l~~~~~~----~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT----IADKVSG----TNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC----CCCCEEE----ECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe----CCccccC----ceeeEEEecCCCEEEEEEECCCCCC
Confidence            56777887 55  444 333333    4999999987 51    1111111    12578999999888776654     


Q ss_pred             CcEEEeeccccccceeeeeeccccc-eeEEEEEEcCcEEEEec---CCCeEEEEecCCCc-ce--EEeccccCCCcCeEE
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHE-MAVLCVCLVGEFLCSGS---ADKSIGIWKREAFG-KL--CRVGAITGHEGPVKC  308 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~-~~--~~~~~~~~h~~~v~~  308 (353)
                      ..|.++++.++.............. ..-..++++|++|+...   ....|+++|+.++. ..  ..+  .....+...+
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~~~~~s  324 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RPREKGVRYD  324 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SCCCTTCCEE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ecCCCCceEE
Confidence            2577788776532222222211111 22234566788777554   34578889988752 12  222  2334455666


Q ss_pred             EEeecCCCCCCeEEEEccCC----CeEEEEEcCC
Q 018591          309 LQASPNAVGGGFLLYSGSLD----KSLRVWWVSK  338 (353)
Q Consensus       309 ~~~~~~~~~~~~~l~s~~~d----g~i~iw~~~~  338 (353)
                      +.|...    +.+++....+    ..|..+++.+
T Consensus       325 ~~~~~g----~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          325 VQMHGT----SHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEETT----TEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EeeeeC----CEEEEEeCCCCCCCcEEEEEcCCC
Confidence            666554    5566655444    3666677664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.27  E-value=0.087  Score=46.49  Aligned_cols=197  Identities=8%  Similarity=-0.007  Sum_probs=114.5

Q ss_pred             CceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCC-eEEEEcCCCcEEEEeCCCCCccc
Q 018591          129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKG-IVYSASADGKIKAWGKELGKSHC  202 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~  202 (353)
                      .....++|++  +.++ +-..++.|..+++........+.........+++  ..+ .+++-...+.|.+.++....   
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---
Confidence            3567889987  4444 4456788999988654333333222234566776  333 55666677889999987553   


Q ss_pred             ccceeeeeccCCceeeEEEEcCCCCeEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEEEecCC
Q 018591          203 HSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLCSGSAD  279 (353)
Q Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d  279 (353)
                        ...........+ ..+++.|....|+...  ..+.|...++...... .+..  ......-.++.++++ +.++=...
T Consensus       114 --~~~l~~~~l~~P-~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~--~~~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          114 --RQVLVWKDLDSP-RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVP--NVGRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             --CEEEECSSCCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEEC--SCSSEEEEEEETTTTEEEEEETTT
T ss_pred             --EEEEEeCCCCCc-ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEEC--CCCCcceEEEccccCEEEEEECCC
Confidence              222222333445 8999999655555544  2567777777654211 1111  111222344444444 44555567


Q ss_pred             CeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          280 KSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       280 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      +.|..+|+..... ..+   .........+++..     +.++++-...+.|...|..+++...
T Consensus       188 ~~I~~~d~dG~~~-~v~---~~~l~~P~glav~~-----~~ly~tD~~~~~I~~~dk~tg~~~~  242 (628)
T 4a0p_A          188 NLIESSNMLGLNR-EVI---ADDLPHPFGLTQYQ-----DYIYWTDWSRRSIERANKTSGQNRT  242 (628)
T ss_dssp             TEEEEEETTSCSC-EEE---EECCSCEEEEEEET-----TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CEEEEEcCCCCce-EEe---eccCCCceEEEEEC-----CEEEEecCCCCEEEEEECCCCCceE
Confidence            8999999876443 222   22233456777764     4555666667889888877665443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.20  E-value=0.12  Score=46.85  Aligned_cols=286  Identities=8%  Similarity=0.036  Sum_probs=150.2

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEe
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~   94 (353)
                      .|.++..+  +..|..|+. +-+..+|..+++...........|.++..+ ...|..|+.+ -+.+++..+...   ...
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~---~~~  266 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPL---QHI  266 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCC---EEE
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcE---EEE
Confidence            48888875  555666664 458888987765433222224568888877 5566666654 477777655431   111


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCC-ceeeeec----cccC
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVAD-LKCLESI----KAHD  168 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~-~~~~~~~----~~~~  168 (353)
                      ...+....                      .-....|.++.... +.|-.|+..| +.++.... .+.....    ....
T Consensus       267 ~~~~~~~~----------------------~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~  323 (758)
T 3ott_A          267 IHDSRNIQ----------------------SLTNNIIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDG  323 (758)
T ss_dssp             CCCTTCTT----------------------SCSCSCEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCC
T ss_pred             EcCCCCcC----------------------cCCcCeEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCC
Confidence            10000000                      01234588888777 6777787777 54443221 1111100    0123


Q ss_pred             cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee---eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI---LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      ..|.++.. .++.+..|+.+ -+..++..++..........   ...-....|.++.-.+++++ ..|+. +-+..||..
T Consensus       324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~-~GL~~~~~~  400 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIATD-GSINRYDYA  400 (758)
T ss_dssp             CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEET-TEEEEEETT
T ss_pred             ceEEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEeC-CcHhhcCcC
Confidence            46788877 55677777765 46677765432100000000   00111223578887777764 44554 458889987


Q ss_pred             ccccceeeeeecc--ccceeEEEEEEc-CcEEEEecCCCeEEEEecCCC-----cceE---EeccccC-CCcCeEEEEee
Q 018591          245 VEIVRWKLACETK--AHEMAVLCVCLV-GEFLCSGSADKSIGIWKREAF-----GKLC---RVGAITG-HEGPVKCLQAS  312 (353)
Q Consensus       245 ~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~~~-----~~~~---~~~~~~~-h~~~v~~~~~~  312 (353)
                      ++...........  .....+.++..+ ...|..|+..+-|..+|..+.     +...   ......+ ....|.++...
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d  480 (758)
T 3ott_A          401 TRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPD  480 (758)
T ss_dssp             TTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEEC
T ss_pred             CCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEc
Confidence            7632111100000  022457777776 456777777666888885531     1110   1111111 12358888888


Q ss_pred             cCCCCCCeEEE-EccCCCeEEEEEcCCC
Q 018591          313 PNAVGGGFLLY-SGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       313 ~~~~~~~~~l~-s~~~dg~i~iw~~~~~  339 (353)
                      ++    |.+.+ .++.+| |..++..++
T Consensus       481 ~~----g~lWi~~~t~~G-l~~~d~~~~  503 (758)
T 3ott_A          481 NE----GNVWVLLYNNKG-IDKINPRTR  503 (758)
T ss_dssp             TT----SCEEEEETTCSS-EEEEETTTT
T ss_pred             CC----CCEEEEccCCCC-cEEEeCCCC
Confidence            87    77665 355554 777787654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.19  E-value=0.023  Score=53.94  Aligned_cols=195  Identities=11%  Similarity=0.073  Sum_probs=116.6

Q ss_pred             EeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC
Q 018591          136 VYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK  213 (353)
Q Consensus       136 ~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  213 (353)
                      .+| ..+++--...++.++|+++.+.++.+.- ..+|.-=.| +++.++..+. ..|..|++....    .+...+..|.
T Consensus        73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s----~P~k~fdR~~  146 (1630)
T 1xi4_A           73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEGES----QPVKMFDRHS  146 (1630)
T ss_pred             cCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEcC-CeEEEeccCCCC----ccHHHHhcch
Confidence            344 3333333468899999998887777654 345666666 7776665553 579999997533    1333333331


Q ss_pred             ---CceeeEEEEcCCCCeEEeec-------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcC----cEEEE-ec-
Q 018591          214 ---DVSLNSVVVSDDGKWVYGGG-------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG----EFLCS-GS-  277 (353)
Q Consensus       214 ---~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~-~~-  277 (353)
                         +..|.....+++.++++..+       -.|.+.+|+.+.+     ....+.+|......+..+|    ..|++ +. 
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~  221 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  221 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEe
Confidence               23346677788888877433       3588999998775     3334445544433333321    11221 11 


Q ss_pred             --CCCeEEEEecCCC---cceEE-----e-ccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          278 --ADKSIGIWKREAF---GKLCR-----V-GAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       278 --~dg~i~iw~~~~~---~~~~~-----~-~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                        ..+.++|-++...   .....     + .....-.+...++..++.    ...+..-+.-|.|+++|++++.++...
T Consensus       222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k----~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK----HDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc----cCEEEEEecCceEEEEecccchhhhhc
Confidence              1368999988553   11000     0 000112334566777777    667888889999999999999887643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.0012  Score=52.93  Aligned_cols=143  Identities=12%  Similarity=0.049  Sum_probs=81.3

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeecccc-CcceEEEEE----eCCeEEEE--cCCCcEEEEeCCCCCcccccceeeeec
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAH-DDAVNGLVA----SKGIVYSA--SADGKIKAWGKELGKSHCHSLKGILEG  211 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~----~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~  211 (353)
                      +.+++++.||.|.-+|..+|+...+++.. ..++....-    .++.++.+  +.||.|..+|..++..........+. 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv-   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV-   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-
Confidence            57899999999999999999999888654 122222211    12344444  68999999998877421100000000 


Q ss_pred             cCCceeeEEEEc-----------CCCCeEEeecCCCcEEEeeccccccceeeeeeccccc---eeEEEEE-------EcC
Q 018591          212 HKDVSLNSVVVS-----------DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHE---MAVLCVC-------LVG  270 (353)
Q Consensus       212 ~~~~~v~~~~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~v~~~~-------~~~  270 (353)
                       ...+   +...           ..+..+++|+.+|.+.-.|..+++..+++........   ....|..       ..+
T Consensus        90 -~~SP---~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~  165 (339)
T 2be1_A           90 -STSP---LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE  165 (339)
T ss_dssp             -TTCS---EEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred             -eccc---cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence             0111   1110           1355788999999999999999976665543211110   0001111       124


Q ss_pred             cEEEEecCCCeEEEEe
Q 018591          271 EFLCSGSADKSIGIWK  286 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~  286 (353)
                      ..++.|..+..+.+.+
T Consensus       166 ~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          166 NMIVIGKTIFELGIHS  181 (339)
T ss_dssp             CEEEEEEEEEECEECC
T ss_pred             CeEEEecceEEEEEEC
Confidence            5666666666666666

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=97.10  E-value=0.066  Score=41.87  Aligned_cols=227  Identities=13%  Similarity=0.119  Sum_probs=124.8

Q ss_pred             eeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe
Q 018591           58 SVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY  137 (353)
Q Consensus        58 ~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  137 (353)
                      .|..++.-..+.+.-. ||.|..|-.....+.-      +|.                          .....|..++..
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg------~p~--------------------------~~~~~i~~ia~G   71 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT------MPA--------------------------ATQSGVDAIAAG   71 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS------CCG--------------------------GGGSCCCEEEEC
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC------CCc--------------------------cCCCCEEEEEeC
Confidence            5777776655544445 8999999866543110      000                          112356667766


Q ss_pred             CCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCcee
Q 018591          138 NGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSL  217 (353)
Q Consensus       138 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (353)
                      ....+.-. ||.|+.|-....-.+..-..-...|..++......+.-. +|.|..|-.....+    +- . .......|
T Consensus        72 ~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gq----lg-~-~~~~~~~i  143 (282)
T 3qhy_B           72 NYHSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQ----TT-V-PAEAQSGV  143 (282)
T ss_dssp             SSEEEEEE-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTST----TS-C-CGGGGSSE
T ss_pred             CCEEEEEE-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCc----CC-C-CccCCCCe
Confidence            63333334 899999986542222111112357888888666555556 99999997654331    10 0 11111223


Q ss_pred             eEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591          218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG  297 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  297 (353)
                      ..++...+.  .+.-. ||.+..|-.........+    ......+..++.-..+.++- .||.|+.|-.....++-.  
T Consensus       144 ~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~--  213 (282)
T 3qhy_B          144 TALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV--  213 (282)
T ss_dssp             EEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC--
T ss_pred             EEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC--
Confidence            555554432  22223 688888866543111111    11134567777665544444 699999998665442211  


Q ss_pred             cccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       298 ~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                       .......|..++....    ...+++   ||.|..|-.....++.
T Consensus       214 -p~~~~~~v~~i~~G~~----h~~al~---~g~v~~wG~n~~gq~~  251 (282)
T 3qhy_B          214 -PTEALSGVSAIASGEW----YSLALK---NGKVIAWGSSRTAPSS  251 (282)
T ss_dssp             -CGGGGSSCCEEEECSS----CEEEEE---TTEEEEESTTCCCCGG
T ss_pred             -CcccCCCceEEEcCCC----EEEEEE---CCEEEEecCCCCcccc
Confidence             1111245788877765    334443   9999999776655443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.88  E-value=0.14  Score=42.21  Aligned_cols=222  Identities=10%  Similarity=0.073  Sum_probs=125.5

Q ss_pred             CCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591           35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY  113 (353)
Q Consensus        35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (353)
                      ..++.|+|+++.+.++.+.-.+ .|.--.|- .+.|+-.+. ..|.-|+++.... +.+....-+.              
T Consensus        85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~-P~kvFdR~~~--------------  147 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQ-PVKMFDRHSS--------------  147 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECS-SEEEEEESSSSCC-CEEEEECCGG--------------
T ss_pred             CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcC-CeeEEecccCCCC-chhheecchh--------------
Confidence            5789999999888888776644 44444443 777777665 4899999876331 1111111000              


Q ss_pred             EeecccceeeeeecCCceEEEEEeC--CeEEEec-------CCCcEEEEEcCCceeeeeccccCcceEEEEEeCC-----
Q 018591          114 VQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-------WDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG-----  179 (353)
Q Consensus       114 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-------~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----  179 (353)
                                  -....|.....++  ++++..+       -.|.+.+|..+. +.-+.+++|......+..+++     
T Consensus       148 ------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~  214 (494)
T 1bpo_A          148 ------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEEST  214 (494)
T ss_dssp             ------------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEE
T ss_pred             ------------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCce
Confidence                        0012233333333  2222111       247789999764 455667788766666655332     


Q ss_pred             eEEEEcC---CCcEEEEeCCCCC-cc-c--ccceee---eeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc
Q 018591          180 IVYSASA---DGKIKAWGKELGK-SH-C--HSLKGI---LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       180 ~l~~~~~---dg~i~iwd~~~~~-~~-~--~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  249 (353)
                      .+..+..   .+.+.+-++.... .. .  ......   -....+.+ .++..++.-..++.-+.-|.+++||++++.  
T Consensus       215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP-vamqvs~kygviyviTK~G~i~lyDleTgt--  291 (494)
T 1bpo_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLETGT--  291 (494)
T ss_dssp             EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE-EEEEEETTTTEEEEEETTSEEEEEETTTCC--
T ss_pred             EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce-eEEEecccCCEEEEEecCceEEEEecccce--
Confidence            3333333   3789999986541 00 0  001111   11234556 788899988899999999999999999984  


Q ss_pred             eeeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCc
Q 018591          250 WKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                        ....-+-...++..-+++  ..=++.....|.|.--.++...
T Consensus       292 --~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          292 --CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             --EEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             --eeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence              333333333344333332  3334444477777666666543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.85  E-value=0.15  Score=41.97  Aligned_cols=144  Identities=12%  Similarity=0.069  Sum_probs=87.5

Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccC--Cc-eeeEEEEcCCCCeEEeecCCCcEEEeeccccccce------
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHK--DV-SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRW------  250 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------  250 (353)
                      .++.+ .++.||.-++....     ..+.+....  .. .+..+..+|+|++|+..+.. .|.+-.+..+....      
T Consensus        34 ~i~~a-~~n~iR~~~i~~~~-----~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           34 RIVFI-QDNIIRWYNVLTDS-----LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             EEEEE-ETTEEEEEETTTCS-----SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred             EEEEE-ECCEEEEEECCCCC-----cceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence            44433 34678877777443     233433331  11 24789999999999988654 68888877321100      


Q ss_pred             ---e-eeeeccc----cceeEEEEEEc-----CcEEEEecCCCeEEEEecCCCc-ceEEecc------ccCCCcCeEEEE
Q 018591          251 ---K-LACETKA----HEMAVLCVCLV-----GEFLCSGSADKSIGIWKREAFG-KLCRVGA------ITGHEGPVKCLQ  310 (353)
Q Consensus       251 ---~-~~~~~~~----~~~~v~~~~~~-----~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~------~~~h~~~v~~~~  310 (353)
                         . ....+..    ...+|..+.|+     +..|++-..|+.|++||+.... .+..+..      +......|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence               0 0111111    24568888886     6789999999999999998522 2221111      112235788999


Q ss_pred             eecCCCCCCeEEEE--ccCCCeEEEE
Q 018591          311 ASPNAVGGGFLLYS--GSLDKSLRVW  334 (353)
Q Consensus       311 ~~~~~~~~~~~l~s--~~~dg~i~iw  334 (353)
                      |.++    +-.|..  .+.+|.|+-.
T Consensus       187 Fg~~----~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKD----GLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTT----SSCEEEEECTTSCEEEEE
T ss_pred             EcCC----CcEEEEEecCCCCCEEEE
Confidence            9997    766666  5577877544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.56  E-value=0.4  Score=42.97  Aligned_cols=191  Identities=12%  Similarity=0.007  Sum_probs=98.3

Q ss_pred             CCeEEEecCC----CcEEEEEcCCceeeeec--------cccCcceEEEEEe-CC-eEEEEcCC------CcEEEEeCCC
Q 018591          138 NGLIYSGSWD----KTLKVWRVADLKCLESI--------KAHDDAVNGLVAS-KG-IVYSASAD------GKIKAWGKEL  197 (353)
Q Consensus       138 ~~~l~~~~~d----g~v~iwd~~~~~~~~~~--------~~~~~~v~~i~~~-~~-~l~~~~~d------g~i~iwd~~~  197 (353)
                      ...++.|+.+    ..+.+||..+.+-...-        ......-....+. ++ .++.|+.+      ..+.+||..+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            3667777753    46888998765432211        1111222333442 44 55666543      3478888887


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC--cEEEeeccccccceeeeee---ccccceeEEEEEEc---
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG--FVMGWEGNVEIVRWKLACE---TKAHEMAVLCVCLV---  269 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~---  269 (353)
                      ..-..   ...+......  .+++.-.+++.++.|+.++  .+.+||..+..  |.....   .........++..+   
T Consensus       478 ~~W~~---~~~~p~~R~~--h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          478 REWSM---IKSLSHTRFR--HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TEEEE---CCCCSBCCBS--CEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CcEEE---CCCCCCCccc--ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCC
Confidence            64211   1111111111  2333334778888887654  68999988763  333322   22122222223334   


Q ss_pred             CcEEEEecC--C-----CeEEEEecCCCcc-----eEEecccc-CCCcCeEEEEeecCCCCCCeEEEEccCC--------
Q 018591          270 GEFLCSGSA--D-----KSIGIWKREAFGK-----LCRVGAIT-GHEGPVKCLQASPNAVGGGFLLYSGSLD--------  328 (353)
Q Consensus       270 ~~~l~~~~~--d-----g~i~iw~~~~~~~-----~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~l~s~~~d--------  328 (353)
                      +.+++.|+.  +     +.+.+||+.+..-     ...+.... ...... ++....+    +++++.||.+        
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~----~~iyv~GG~~~~~~~~~~  625 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITP----RKLLIVGGTSPSGLFDRT  625 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEET----TEEEEECCBCSSCCCCTT
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCC----CEEEEECCccCCCCCCCC
Confidence            667777765  2     4688999887651     23332211 111112 2333443    5788888743        


Q ss_pred             CeEEEEEcCCCC
Q 018591          329 KSLRVWWVSKQS  340 (353)
Q Consensus       329 g~i~iw~~~~~~  340 (353)
                      ..+.+||+.+.+
T Consensus       626 ~~v~~yd~~t~~  637 (695)
T 2zwa_A          626 NSIISLDPLSET  637 (695)
T ss_dssp             TSEEEEETTTTE
T ss_pred             CeEEEEECCCCe
Confidence            458888887653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.54  E-value=0.24  Score=40.09  Aligned_cols=141  Identities=13%  Similarity=0.056  Sum_probs=75.8

Q ss_pred             CCCcEEEEeCCCCCcccccceeeeec-----cCCceeeEEEEcC--CCC--eEEeecC--CCcEEEeeccccccceeeee
Q 018591          186 ADGKIKAWGKELGKSHCHSLKGILEG-----HKDVSLNSVVVSD--DGK--WVYGGGS--DGFVMGWEGNVEIVRWKLAC  254 (353)
Q Consensus       186 ~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~--~~~--~l~~~~~--dg~i~i~d~~~~~~~~~~~~  254 (353)
                      .+|.|.++|..+.......+  .+.+     ..-.+ ..+.+.+  ++.  ++++-..  +..|.+|++...........
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l--~~~g~~~~~~~f~P-hGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~  157 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSEL--EIIGNTLDISSFNP-HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK  157 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEEC--EEECSSCCGGGCCE-EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEE--EccCCCCCcCceee-eeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe
Confidence            68999999987543111111  1222     11233 6777755  343  3444333  56788888766533334443


Q ss_pred             eccccc-eeE--EEEEEcCcEEEEec-----------------CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          255 ETKAHE-MAV--LCVCLVGEFLCSGS-----------------ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       255 ~~~~~~-~~v--~~~~~~~~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      ...+.. ...  ..+..+|.+.++..                 ..|.|+-++..  + ...+   ...-...+.++|+||
T Consensus       158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~---~~~l~~pNGia~spD  231 (355)
T 3sre_A          158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVV---AEGFDFANGINISPD  231 (355)
T ss_dssp             EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEE---EEEESSEEEEEECTT
T ss_pred             ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEe---ecCCcccCcceECCC
Confidence            333322 122  33445677766644                 13555555542  2 1121   122345789999999


Q ss_pred             CCCCCeEEEEc-cCCCeEEEEEcCCC
Q 018591          315 AVGGGFLLYSG-SLDKSLRVWWVSKQ  339 (353)
Q Consensus       315 ~~~~~~~l~s~-~~dg~i~iw~~~~~  339 (353)
                          ++.|+.+ +..+.|..|++...
T Consensus       232 ----g~~lYvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          232 ----GKYVYIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             ----SSEEEEEEGGGTEEEEEEECTT
T ss_pred             ----CCEEEEEeCCCCeEEEEEECCC
Confidence                7665554 55789999998753

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=96.47  E-value=0.22  Score=38.92  Aligned_cols=240  Identities=14%  Similarity=0.148  Sum_probs=130.1

Q ss_pred             ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeecc
Q 018591           18 SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTL   97 (353)
Q Consensus        18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~   97 (353)
                      .|..|+......+.-. ||.|..|-....-.+..-......|..++......+.-. ||.|..|-.....+.-      +
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg------~   96 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT------V   96 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTC------C
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCC------C
Confidence            6788887644433335 999999975432211111111336777776655444444 8999999866533110      0


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS  177 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~  177 (353)
                      |.                          .-...|..++......+.-. ||.|+.|-....-.+.........|..++..
T Consensus        97 P~--------------------------~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G  149 (282)
T 3qhy_B           97 PA--------------------------EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG  149 (282)
T ss_dssp             CG--------------------------GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC
T ss_pred             Cc--------------------------ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc
Confidence            10                          11246777877775555556 9999999865432222111224567888775


Q ss_pred             CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc
Q 018591          178 KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       178 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      ....+.-. ||.+..|-.....+..      ........|..++...+. .++.  .||.+..|-....-......    
T Consensus       150 ~~~~~~l~-~G~v~~wG~n~~gqlg------~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~----  215 (282)
T 3qhy_B          150 VYTALAVK-NGGVIAWGDNYFGQTT------VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPT----  215 (282)
T ss_dssp             SSEEEEEE-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCG----
T ss_pred             cCEEEEEE-CCEEEEecCCCCCCCC------CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCc----
Confidence            55434344 7999999765433110      000111223566655442 2333  58999999655431111111    


Q ss_pred             ccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          258 AHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .....+..++....+.++-. ||.|+.|-.....   ++..    ...|.+++..+.
T Consensus       216 ~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~g---q~~v----~~~v~~iaaG~~  264 (282)
T 3qhy_B          216 EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTA---PSSV----QSGVSSIEAGPN  264 (282)
T ss_dssp             GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCC---CGGG----SSCEEEEEECSS
T ss_pred             ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCc---cccC----CCCcEEEEECcC
Confidence            11234566666544444444 9999999876544   2221    235777776665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.47  E-value=0.46  Score=42.61  Aligned_cols=152  Identities=9%  Similarity=-0.002  Sum_probs=79.8

Q ss_pred             CeEEEecCC------CcEEEEEcCCce--eeeeccccCcceEEEEE-eCCeEEEEcCCC--cEEEEeCCCCCccccccee
Q 018591          139 GLIYSGSWD------KTLKVWRVADLK--CLESIKAHDDAVNGLVA-SKGIVYSASADG--KIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       139 ~~l~~~~~d------g~v~iwd~~~~~--~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~  207 (353)
                      ..++.|+.+      +.+.+||..+.+  .+..+......-.+..+ .+..++.|+.++  .+.+||..+..-.......
T Consensus       453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g  532 (695)
T 2zwa_A          453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD  532 (695)
T ss_dssp             EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSS
T ss_pred             EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCC
Confidence            566666643      357889987743  23223222222233333 444666776654  6899998876521111100


Q ss_pred             eeeccCCceeeEEEEcCC-CCeEEeecC--C-----CcEEEeecccccc----ceeeeeec-cccceeEEEEEEc-CcEE
Q 018591          208 ILEGHKDVSLNSVVVSDD-GKWVYGGGS--D-----GFVMGWEGNVEIV----RWKLACET-KAHEMAVLCVCLV-GEFL  273 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~----~~~~~~~~-~~~~~~v~~~~~~-~~~l  273 (353)
                      ......... .++.+..+ ++.++.|+.  +     ..+.+||+.+...    .|...... ........+...+ +.++
T Consensus       533 ~~p~~r~~~-~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy  611 (695)
T 2zwa_A          533 EFFQNSLVS-AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL  611 (695)
T ss_dssp             GGGGSCCBS-CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred             CCCCcccce-eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence            011111111 33555555 667777765  2     3588899887741    12222221 1112223344555 7888


Q ss_pred             EEecC--------CCeEEEEecCCCc
Q 018591          274 CSGSA--------DKSIGIWKREAFG  291 (353)
Q Consensus       274 ~~~~~--------dg~i~iw~~~~~~  291 (353)
                      +.|+.        ...+.+||+.+.+
T Consensus       612 v~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          612 IVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EECCccCCCCCCCCCeEEEEECCCCe
Confidence            88874        3468999988753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.43  E-value=0.36  Score=40.98  Aligned_cols=155  Identities=10%  Similarity=-0.015  Sum_probs=88.9

Q ss_pred             ceEEEEEeC---CeEEEEcC-CCcEEEEeCCCCCcccccceeeeecc---CCceeeEEEE-------cCCCCeEEeecCC
Q 018591          170 AVNGLVASK---GIVYSASA-DGKIKAWGKELGKSHCHSLKGILEGH---KDVSLNSVVV-------SDDGKWVYGGGSD  235 (353)
Q Consensus       170 ~v~~i~~~~---~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~d  235 (353)
                      ....|++.+   +.|+.+.. .+.|++.|+..+.     +.......   ...+ ..++|       +++++.|+++...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----v~~l~~~~~~~~~~p-~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----LSSPLNINTIPTNRI-RSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----EEEEECCTTSSCSBE-EEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----EEEEEccCccccCCC-cEEEEeecccccCCCCCEEEEEeCC
Confidence            456778854   34544444 4678999988875     33322221   2234 88999       9999866666554


Q ss_pred             C-c------EEEeeccc-cccce----eeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEecC-------CCcc---
Q 018591          236 G-F------VMGWEGNV-EIVRW----KLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKRE-------AFGK---  292 (353)
Q Consensus       236 g-~------i~i~d~~~-~~~~~----~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~-------~~~~---  292 (353)
                      + .      |.+++... +....    .....+ .+. .-.++.++ +.++++-..++.|+.+|+.       ++..   
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeeccC-CCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence            3 2      55665333 11110    111111 122 22355563 5666677788899999987       4432   


Q ss_pred             --------eEEeccccCCCcCeEEEEeecCCCCCCeE-EEEccCCCeEEEEEcC
Q 018591          293 --------LCRVGAITGHEGPVKCLQASPNAVGGGFL-LYSGSLDKSLRVWWVS  337 (353)
Q Consensus       293 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-l~s~~~dg~i~iw~~~  337 (353)
                              ...+... +.......|+|+|+    +++ +++-+....|+.++..
T Consensus       292 ~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~----G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          292 IVKNNPNTFKQLFTI-ADPSWEFQIFIHPT----GKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             BGGGCTTTEEEEEEC-SSSSCCEEEEECTT----SSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccccceeEec-CCCCCceEEEEcCC----CCEEEEEeCCCCEEEEEecC
Confidence                    1122222 22345689999999    884 5555667788886654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.33  E-value=0.78  Score=43.73  Aligned_cols=258  Identities=9%  Similarity=0.003  Sum_probs=131.4

Q ss_pred             EEEEE-CCcEEEEEeCCCcEEEEeCCCc--------eeeEEeccCceeeEEEEEe------CCEEEEec---CCCcEEEE
Q 018591           20 SSLAL-CGEFILSASQGKDIIVWQQPDL--------RMFTKFGHGDGSVKAVVTV------GNKVFTAH---QDSRIRVW   81 (353)
Q Consensus        20 ~~~~~-~~~~l~s~~~dg~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~------~~~l~s~~---~dg~i~~w   81 (353)
                      +++++ ++.+|+.||..|.=.+|.+...        +.+..+.. -++|..+...      ...+++++   .+|.+++.
T Consensus       330 ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N-~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l  408 (1158)
T 3ei3_A          330 ECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTN-LGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII  408 (1158)
T ss_dssp             SEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECC-CCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred             cEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecC-cCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence            44555 3668999998887777776533        33445544 4678877764      13555443   55778776


Q ss_pred             EcccCccceeEEeeccccccceeeeec----ccceeEeecc-cceeeeeecCCceEEEEEeC-----CeEEEecC-----
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFM----KQSNYVQTRR-HHKRLWIEHADSISCLTVYN-----GLIYSGSW-----  146 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~-----  146 (353)
                      .-.-+..  ......++..........    ....++.... ....++.-....+..+...+     ..|+++..     
T Consensus       409 r~Gi~~~--~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~i  486 (1158)
T 3ei3_A          409 RNGIGIH--EHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQL  486 (1158)
T ss_dssp             EESBCEE--EEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEE
T ss_pred             ecCCCEE--EEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeE
Confidence            5322211  111112222111110000    0111221111 11112211112222222111     33444321     


Q ss_pred             ----CCcEEEEEcCCceeeeecccc-CcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591          147 ----DKTLKVWRVADLKCLESIKAH-DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       147 ----dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (353)
                          ...|++.+......+..+... ...|...+.++..++.++ ++.+.++++.+++..   ......-  ...|.+++
T Consensus       487 vQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~---~~~~~~l--~~evscl~  560 (1158)
T 3ei3_A          487 IQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELR---QISHTEM--EHEVACLD  560 (1158)
T ss_dssp             EEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEE---EEEEEEC--SSCEEEEE
T ss_pred             EEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCcee---eecccCC--CCceEEEE
Confidence                234667776555556566543 346777777777776664 678888888765311   1111111  22358999


Q ss_pred             EcCC------CCeEEeecC-CCcEEEeeccccccceeeeeeccc--cceeEEEEEEc-CcEEEEecCCCeEEEEecC
Q 018591          222 VSDD------GKWVYGGGS-DGFVMGWEGNVEIVRWKLACETKA--HEMAVLCVCLV-GEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       222 ~~~~------~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~~  288 (353)
                      +.|.      +.++++|.. |++++++++......  ....+..  ....+.-..+. ..+|..|-.||.+.-+.++
T Consensus       561 i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~--~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          561 ITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL--HKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             CCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE--EEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             eecCCCCcccccEEEEEECCCCEEEEEECCCCCeE--EEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            8763      468999996 999999999864221  1112211  12223223333 3578899999988766554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.31  E-value=0.33  Score=39.27  Aligned_cols=172  Identities=9%  Similarity=0.093  Sum_probs=92.3

Q ss_pred             CCCcEEEEEcCCce-eeeec--cc-----cCcceEEEEE-e--CC--eEEEE-cC--CCcEEEEeCCCCCcccccceeee
Q 018591          146 WDKTLKVWRVADLK-CLESI--KA-----HDDAVNGLVA-S--KG--IVYSA-SA--DGKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       146 ~dg~v~iwd~~~~~-~~~~~--~~-----~~~~v~~i~~-~--~~--~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~  209 (353)
                      .+|.|.++|+.+.. ....+  .+     .......|.+ .  ++  .|+++ ..  +.++.+|++..... .......+
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~-~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-SLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-EEEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-EEEEEecc
Confidence            68999999987321 11222  11     2345667776 3  23  34444 33  46788887765431 12233344


Q ss_pred             eccCCceeeEEEEcCCCCeEEeec-----------------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcE
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGG-----------------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEF  272 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  272 (353)
                      .+..-...+.+.+.++|.+.++..                 ..|.+..++...    .+... ..-....-.+++++++.
T Consensus       160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~----~~~~~-~~l~~pNGia~spDg~~  234 (355)
T 3sre_A          160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND----VRVVA-EGFDFANGINISPDGKY  234 (355)
T ss_dssp             CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC----CEEEE-EEESSEEEEEECTTSSE
T ss_pred             ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe----EEEee-cCCcccCcceECCCCCE
Confidence            444333348999999998777654                 124455555421    11111 11122333566777766


Q ss_pred             EEEe-cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec-CCCCCCeEEEEccCC
Q 018591          273 LCSG-SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP-NAVGGGFLLYSGSLD  328 (353)
Q Consensus       273 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~l~s~~~d  328 (353)
                      |+.+ +..+.|+.|++...........+ ...+..-.+++.+ +    |++.+++..+
T Consensus       235 lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~----G~lwva~~~~  287 (355)
T 3sre_A          235 VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVT----GDLWVGCHPN  287 (355)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTT----CCEEEEEESC
T ss_pred             EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCC----CcEEEEecCC
Confidence            6554 46789999998743323222223 2235567778887 6    7776655433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.21  E-value=0.59  Score=41.22  Aligned_cols=191  Identities=13%  Similarity=0.106  Sum_probs=100.8

Q ss_pred             CceEEEEEC--Cc-EEEEEeCCCcEEEEeCCCcee-eEEeccCceeeEEEEEe--CCE-EEEecCCCcEEEEEcccCccc
Q 018591           17 GSVSSLALC--GE-FILSASQGKDIIVWQQPDLRM-FTKFGHGDGSVKAVVTV--GNK-VFTAHQDSRIRVWKVSRSSEN   89 (353)
Q Consensus        17 ~~v~~~~~~--~~-~l~s~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~-l~s~~~dg~i~~w~~~~~~~~   89 (353)
                      .....|+|+  ++ ++++-...+.|..+++..... ...+...-.....++++  ++. .++-...+.|.+.+++.....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            346678885  34 444444567888888765432 22333323456778887  454 445556788999988764311


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeeecc
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLESIK  165 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~~~  165 (353)
                      .  ++.                              ..-.....|+++|  +.|+....  .+.|...+++.........
T Consensus       120 ~--l~~------------------------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~  167 (619)
T 3s94_A          120 V--LFW------------------------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN  167 (619)
T ss_dssp             E--EEC------------------------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             E--EEe------------------------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe
Confidence            1  110                              1122344677766  55555543  3566666654322222222


Q ss_pred             ccCcceEEEEEe--CC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          166 AHDDAVNGLVAS--KG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       166 ~~~~~v~~i~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      ..-...+.|++.  .+ .+++-...+.|...|+....     ......+....+ ..+++..+ ...++-...+.|...|
T Consensus       168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-----~~~~~~~~~~~P-~gi~~~~~-~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-----RQAVVKGSLPHP-FALTLFED-ILYWTDWSTHSILACN  240 (619)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-----EC---------C-CCEEESSS-EEEEECTTTCSEEEEE
T ss_pred             CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-----cEEEEeCCCCCc-eEEEEeCC-EEEEecCCCCEEEEEE
Confidence            233456788884  34 44455567789999987654     111222222233 56777665 4455555667788887


Q ss_pred             cccc
Q 018591          243 GNVE  246 (353)
Q Consensus       243 ~~~~  246 (353)
                      ..++
T Consensus       241 ~~tg  244 (619)
T 3s94_A          241 KYTG  244 (619)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            7554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.11  E-value=0.66  Score=40.89  Aligned_cols=282  Identities=11%  Similarity=-0.011  Sum_probs=136.0

Q ss_pred             CceEEEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC--CCcEEEEEcccCccc
Q 018591           17 GSVSSLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ--DSRIRVWKVSRSSEN   89 (353)
Q Consensus        17 ~~v~~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~~w~~~~~~~~   89 (353)
                      .....|+++   +++.++-...+.|.+.++........+...-..-..|+++  +..|+....  .+.|...+++.... 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence            467788886   4455565667899999986543333332333445667776  455554442  34454445443221 


Q ss_pred             eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeeccc
Q 018591           90 VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~  166 (353)
                       ...+                              ...-...+.+++++  +.|+.+ ...+.|...|+..........+
T Consensus       163 -~~l~------------------------------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~  211 (619)
T 3s94_A          163 -FIII------------------------------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG  211 (619)
T ss_dssp             -EEEE------------------------------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred             -EEEE------------------------------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC
Confidence             0111                              01223456788875  444444 4567788888764333222221


Q ss_pred             cCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccc------cce--eeee------ccC-----CceeeEEEE----
Q 018591          167 HDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCH------SLK--GILE------GHK-----DVSLNSVVV----  222 (353)
Q Consensus       167 ~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~------~~~--~~~~------~~~-----~~~v~~~~~----  222 (353)
                      ......+|++.++ .+++-...+.|...|..+++....      .+.  ..+.      +..     ......+++    
T Consensus       212 ~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~  291 (619)
T 3s94_A          212 SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPV  291 (619)
T ss_dssp             ----CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSS
T ss_pred             CCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCC
Confidence            2223346666444 455555677888888766542100      000  0000      000     000011111    


Q ss_pred             -------cCCCC---------------eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc---CcEEEEec
Q 018591          223 -------SDDGK---------------WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV---GEFLCSGS  277 (353)
Q Consensus       223 -------~~~~~---------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~  277 (353)
                             .|.|-               +|+.+ ..+.|+..++....... ...... .-....+++++   +.++++-.
T Consensus       292 ~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~-~~~~~~-~l~~~~~ld~d~~~~~ly~sD~  368 (619)
T 3s94_A          292 KPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTD-IVLQLE-DIRHAIAIDYDPVEGYIYWTDD  368 (619)
T ss_dssp             TTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCC-EECCCS-CCSSEEEEEEETTTTEEEEEET
T ss_pred             CCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccce-eEEecc-ccCccEEEEEEcCCCeEEEEeC
Confidence                   11111               11111 12345545554332110 111111 12234566665   44555555


Q ss_pred             CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          278 ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       278 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      ..+.|+.++++..... .+  +...-.....+++.+.   ++++.++-+..+.|.+.++...
T Consensus       369 ~~~~I~r~~~~g~~~~-~v--~~~~~~~p~GlAvD~~---~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          369 EVRAIRRSFIDGSGSQ-FV--VTAQIAHPDGIAVDWV---ARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             TTTEEEEEETTSCSCE-EE--ECSSCSCCCEEEEETT---TTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCeEEEEEcCCCccE-EE--EECCCCCcCceEEecc---cCcEEEEeCCCCcEEEEeCCCC
Confidence            6788999988764321 22  1222345678888864   1566666677788998887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.06  E-value=0.54  Score=45.24  Aligned_cols=178  Identities=13%  Similarity=0.183  Sum_probs=97.9

Q ss_pred             CCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeeccccee
Q 018591           35 GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY  113 (353)
Q Consensus        35 dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (353)
                      ..++.|+|+++...++.+.-.. .|.--.|- .+.|+..+. ..|.-|+++....                         
T Consensus        85 g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~-------------------------  137 (1630)
T 1xi4_A           85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQ-------------------------  137 (1630)
T ss_pred             CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEcC-CeEEEeccCCCCc-------------------------
Confidence            5678888887777666665533 34444443 556655554 4788888865321                         


Q ss_pred             Eeecccceeeeeec----CCceEEEEEeC--CeEE-Ee------cCCCcEEEEEcCCceeeeeccccCcceEEEEEeC--
Q 018591          114 VQTRRHHKRLWIEH----ADSISCLTVYN--GLIY-SG------SWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--  178 (353)
Q Consensus       114 ~~~~~~~~~~~~~~----~~~i~~~~~~~--~~l~-~~------~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--  178 (353)
                            +.+++..|    ...|..-..++  ++++ +|      .-.|.+.+|..+. +..+.+++|......+..++  
T Consensus       138 ------P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~  210 (1630)
T 1xi4_A          138 ------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNA  210 (1630)
T ss_pred             ------cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCC
Confidence                  11111111    12333333333  2222 21      2458899998754 44455666665554444421  


Q ss_pred             --CeEEE-Ec---CCCcEEEEeCCCC-Cc---ccccceeee---eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccc
Q 018591          179 --GIVYS-AS---ADGKIKAWGKELG-KS---HCHSLKGIL---EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV  245 (353)
Q Consensus       179 --~~l~~-~~---~dg~i~iwd~~~~-~~---~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  245 (353)
                        ..+++ +.   ..+.+.+-++... ..   ........+   ....+.+ .++..++.-..+..-+.-|.+++||+.+
T Consensus       211 ~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          211 EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc-eEEEeccccCEEEEEecCceEEEEeccc
Confidence              12222 11   1368999888554 10   000111111   1224455 6788888888888999999999999999


Q ss_pred             cc
Q 018591          246 EI  247 (353)
Q Consensus       246 ~~  247 (353)
                      +.
T Consensus       290 ~~  291 (1630)
T 1xi4_A          290 GT  291 (1630)
T ss_pred             ch
Confidence            84

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.66  E-value=0.69  Score=37.47  Aligned_cols=55  Identities=20%  Similarity=0.229  Sum_probs=34.2

Q ss_pred             EcCcEEEEecCCCeEEEEecCCCcce---EEeccccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591          268 LVGEFLCSGSADKSIGIWKREAFGKL---CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS  326 (353)
Q Consensus       268 ~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~  326 (353)
                      ++|.++++....+.|...+++.....   .....+..-...+..+++.||    |.++++..
T Consensus       276 ~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd----G~lyv~~~  333 (352)
T 2ism_A          276 FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPD----GALYVTTS  333 (352)
T ss_dssp             ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTT----SCEEEEEC
T ss_pred             ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCC----CcEEEEEe
Confidence            46777777777788888887654321   011111122357899999999    77666653

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=95.56  E-value=0.81  Score=37.66  Aligned_cols=283  Identities=11%  Similarity=0.063  Sum_probs=140.1

Q ss_pred             CCcEEEEEeCCCcEEEEeCCC-ce-------eeEE---ecc-CceeeEEEEEeCCEEEEecCCCcEEEEEcccCccc---
Q 018591           25 CGEFILSASQGKDIIVWQQPD-LR-------MFTK---FGH-GDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSEN---   89 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~-~~-------~~~~---~~~-~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~---   89 (353)
                      ..+.++.-..||+|..|-... ++       ....   +.. ....+..++......+....||.|..|-.....+.   
T Consensus         9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g   88 (389)
T 3kci_A            9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIG   88 (389)
T ss_dssp             ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred             CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence            455666677788888885332 11       1111   111 11245556555777777788999999976543210   


Q ss_pred             ---eeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc------
Q 018591           90 ---VFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL------  158 (353)
Q Consensus        90 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~------  158 (353)
                         .......++                          .-....+..+....  ...++-..||.|+.|-....      
T Consensus        89 ~~~~~~~p~~v~--------------------------~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g  142 (389)
T 3kci_A           89 GTESVSTPTLLE--------------------------SIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG  142 (389)
T ss_dssp             SSCCEEEEEECG--------------------------GGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred             CcCCccCCEEcc--------------------------cccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence               000000000                          01112333344443  56666678999999965321      


Q ss_pred             -----eeeeeccc-cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCc------ccccceeeeeccCCceeeEEEEcCCC
Q 018591          159 -----KCLESIKA-HDDAVNGLVASKGIVYSASADGKIKAWGKELGKS------HCHSLKGILEGHKDVSLNSVVVSDDG  226 (353)
Q Consensus       159 -----~~~~~~~~-~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (353)
                           .....+.. ....|..++......++...+|.|..|-.....+      ................+..++.....
T Consensus       143 ~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~  222 (389)
T 3kci_A          143 NRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD  222 (389)
T ss_dssp             SCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS
T ss_pred             CCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC
Confidence                 01111211 2336778887677777778899999996432110      00001111122222233566655433


Q ss_pred             CeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc-------
Q 018591          227 KWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG-------  291 (353)
Q Consensus       227 ~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------  291 (353)
                      .+.++-..+|.|..|-....-.        ...+..........+..++.-..+.++-..+|.|+.|-.....       
T Consensus       223 ~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~  302 (389)
T 3kci_A          223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD  302 (389)
T ss_dssp             CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred             cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence            5666667889999986443110        0011111111223466677666666677889999999754321       


Q ss_pred             ----ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          292 ----KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       292 ----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                          .+..+..+.  ...|..++....      ..+....||.|..|-.....+
T Consensus       303 ~~~~~P~~v~~l~--~~~v~~ia~G~~------h~~al~~~G~v~~wG~n~~Gq  348 (389)
T 3kci_A          303 DHVRRPRQVQGLQ--GKKVIAIATGSL------HCVCCTEDGEVYTWGDNDEGQ  348 (389)
T ss_dssp             CCEEEEEECGGGT--TCCEEEEEECSS------EEEEEETTCCEEEEECCTTST
T ss_pred             ccccCCeEeccCC--CCCEEEEEeccC------eEEEECCCCCEEEeeCCCCCc
Confidence                122222222  235777776644      444456899999998765433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.21  E-value=0.99  Score=36.56  Aligned_cols=103  Identities=14%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceee---eeccCCceeeEEEEcCC---CCeEEeecC----C--
Q 018591          169 DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGI---LEGHKDVSLNSVVVSDD---GKWVYGGGS----D--  235 (353)
Q Consensus       169 ~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~---~~~l~~~~~----d--  235 (353)
                      .....+++ +++.++.+..+|.|+++|. +++ .   ....   .......+ ..++++|+   +..|+++..    +  
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~---~~~~~~v~~~g~~g~-~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-K---LVASFDVANVGEAGL-LGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCE-E---EEEECCCCCSTTCSE-EEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-e---EeeccceeecCCCce-eeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            34578888 6667777788899999973 332 1   1111   11122334 89999997   455554433    2  


Q ss_pred             --CcEEEeeccccccc---ee-eee---eccccceeEEEEEEcCcEEEEec
Q 018591          236 --GFVMGWEGNVEIVR---WK-LAC---ETKAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       236 --g~i~i~d~~~~~~~---~~-~~~---~~~~~~~~v~~~~~~~~~l~~~~  277 (353)
                        ..|..|+.......   .+ +..   ....|...-..+.++|.++++-+
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence              56777776543100   01 111   11234445566677787666543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.11  E-value=1.6  Score=38.49  Aligned_cols=197  Identities=10%  Similarity=0.008  Sum_probs=105.3

Q ss_pred             ceEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeeccc------cCcceEEEEEe---CCeEEEEcCCCcEEEEeCCC
Q 018591          130 SISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKA------HDDAVNGLVAS---KGIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~------~~~~v~~i~~~---~~~l~~~~~dg~i~iwd~~~  197 (353)
                      .+..++|++  +.|+.+ ...+.|+.+++........+..      ....+..+++.   .+++++-+..+.|.+.++..
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G  420 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG  420 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence            455677776  444444 3356677776543222222211      12356778872   33666777788999999864


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCC--cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDG--FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                      ..     ...........+ ..+++.| .|.++++-....  .|...++..... ..+.. .......-.++.+..+.|.
T Consensus       421 ~~-----~~~l~~~~l~~P-r~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~l~~P~gla~D~~~~~LY  492 (628)
T 4a0p_A          421 RS-----VGVVLKGEQDRP-RAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SGLSKPIALALDSRLGKLF  492 (628)
T ss_dssp             CE-----EEEEEECTTCCE-EEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SSCSCEEEEEEETTTTEEE
T ss_pred             Ce-----EEEEEeCCCCce-eeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-ccCCCccEEEEeCCCCEEE
Confidence            42     222233334455 9999999 455444433222  566666654321 11111 1111222334444444554


Q ss_pred             -EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          275 -SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       275 -~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                       +=+..+.|...+++.... ..+.  ........+|+...     +.++.+-...+.|...+..+++..
T Consensus       493 w~D~~~~~I~~~~~dG~~r-~~~~--~~~~~~P~glav~~-----~~ly~tD~~~~~i~~~~k~~G~~~  553 (628)
T 4a0p_A          493 WADSDLRRIESSDLSGANR-IVLE--DSNILQPVGLTVFE-----NWLYWIDKQQQMIEKIDMTGREGR  553 (628)
T ss_dssp             EEETTTTEEEEEETTSCSC-EEEE--CSSCSCEEEEEEET-----TEEEEEETTTTEEEEEETTSSSCC
T ss_pred             EEeCCCCEEEEEeCCCCce-EEEE--cCCCCCcEEEEEEC-----CEEEEEECCCCeEEEEECcCCCCc
Confidence             445578899999865432 2222  12233467777764     455566566677887887766543

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=94.80  E-value=1.5  Score=36.52  Aligned_cols=292  Identities=8%  Similarity=0.001  Sum_probs=148.9

Q ss_pred             eEEEEECCcEEEEEeCCCcEEEEeCCC-c-----------eeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccC
Q 018591           19 VSSLALCGEFILSASQGKDIIVWQQPD-L-----------RMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus        19 v~~~~~~~~~l~s~~~dg~v~vwd~~~-~-----------~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      +..+++...+-+.-..||.|..|-... +           .....+.. -..|..++....+.+....||.|..|-....
T Consensus        26 ~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~  104 (423)
T 3mvd_K           26 RARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAG-IPDAVDISAGGMHNLVLTKSGDIYSFGCNDE  104 (423)
T ss_dssp             ---CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCS-CSSEEEEEECSSEEEEEETTSCEEEEECCSS
T ss_pred             eeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccC-CCCceEEeeCCCeEEEEeCCCeEEEeECCCC
Confidence            334444444444456788888884221 1           11111222 2346666666778888889999999976543


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEc--CC-ce----
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRV--AD-LK----  159 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~--~~-~~----  159 (353)
                      ...-........                  ...+..+  .....|..++......++-..||.|+.|-.  .. ++    
T Consensus       105 GqLG~~~~~~~~------------------~~~P~~v--~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~  164 (423)
T 3mvd_K          105 GALGRDTSEDGS------------------ESKPDLI--DLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLT  164 (423)
T ss_dssp             STTCSCCCSTTS------------------SSSCEEC--CCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESB
T ss_pred             cCCCCCCcCCcc------------------ccCCeEE--cCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcC
Confidence            210000000000                  0000000  122357777776666667788999999975  22 22    


Q ss_pred             -------eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc------------------cccceeeeeccCC
Q 018591          160 -------CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH------------------CHSLKGILEGHKD  214 (353)
Q Consensus       160 -------~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------~~~~~~~~~~~~~  214 (353)
                             ++..  .....|..++......++-..+|.|+.|-.....+.                  ...+.. ......
T Consensus       165 ~~~~~~~p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~-v~~~~~  241 (423)
T 3mvd_K          165 IDGNKRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQ-LIITRA  241 (423)
T ss_dssp             TTBCEEEEEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEE-ECCTTC
T ss_pred             CCCCCceeeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeE-EeecCC
Confidence                   1111  123467788876677777788999999954322100                  001111 111112


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-------eeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-------WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~  287 (353)
                      ..+..++.... ..++.-..+|.+..|-.......       .............+..++.-..+.++-..||.|+.|-.
T Consensus       242 ~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~  320 (423)
T 3mvd_K          242 KPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGR  320 (423)
T ss_dssp             CCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred             ccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEEC
Confidence            22344444322 22333367888888864431100       00000111112356677766677777788999999975


Q ss_pred             CCCcc---------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          288 EAFGK---------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       288 ~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      ....+         ......+..-...|..|+....      .-+.-..||.|..|-.....+
T Consensus       321 n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~------hs~alt~~G~v~~wG~n~~Gq  377 (423)
T 3mvd_K          321 PEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV------CSYAVTIDGKLYSWGSGVNNQ  377 (423)
T ss_dssp             CGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT------EEEEEETTSCEEEEECCTTSC
T ss_pred             CCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC------eEEEEcCCCCEEEECCCCCCC
Confidence            43210         1111112222236888887754      333336899999997665433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.62  E-value=0.98  Score=33.56  Aligned_cols=106  Identities=11%  Similarity=-0.008  Sum_probs=57.1

Q ss_pred             eeEEEEcCCCCeEEeecCCCcEEEeeccccccc-----eeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCc
Q 018591          217 LNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-----WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       217 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                      +..++|+|++.+.++  .+|.+.-.+..+....     ...+....-+.-....+.++|.+.++  .||.|+-++..+..
T Consensus        43 ~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~  118 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD  118 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred             ceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence            489999999986666  6777666665432110     01111000111122333445666666  56999888764322


Q ss_pred             ceEEecc--c--cCCCcCeEEEEeecCCCCCCeEEEEccCCCeEE
Q 018591          292 KLCRVGA--I--TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR  332 (353)
Q Consensus       292 ~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~  332 (353)
                      ...-+..  .  .+-=..+..|.+.|+    |.+.+..  |+.+.
T Consensus       119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~----G~Lyav~--dg~ly  157 (236)
T 1tl2_A          119 TDNWIARATEVGSGGWSGFKFLFFHPN----GYLYAVH--GQQFY  157 (236)
T ss_dssp             TCCHHHHSEEEECSSGGGEEEEEECTT----SCEEEEE--TTEEE
T ss_pred             CCceeccccEeccCCCCceEEEEECCC----ceEEEEe--CCcEE
Confidence            1111111  0  011146799999999    8877777  77743

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.08  E-value=1.3  Score=32.88  Aligned_cols=106  Identities=8%  Similarity=-0.001  Sum_probs=59.2

Q ss_pred             CceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcc--------eEEEEE-eCCeEEEEcCCCcEEEEeCCCC
Q 018591          129 DSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA--------VNGLVA-SKGIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       129 ~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~i~~-~~~~l~~~~~dg~i~iwd~~~~  198 (353)
                      ..+..++|+| ..|.+. .+|.++-.+..+..... +.+....        ..++.+ +++.|.++ .||.|+-++..+.
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~  117 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQS  117 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCS
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcC
Confidence            3677999999 556665 77877766654422111 1011122        367777 44466665 6799988876433


Q ss_pred             Ccccc-cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          199 KSHCH-SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       199 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                      ..... .....+....-..+..+.+.|+|.+.++.  |+.+.
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            21111 11111111122234899999999877776  77654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.82  E-value=2.4  Score=35.05  Aligned_cols=153  Identities=16%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCceeeEEeccC----ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccc
Q 018591           25 CGEFILSASQGKDIIVWQQPDLRMFTKFGHG----DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLP   98 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~   98 (353)
                      +|..++.+-. +.||.-++.+....+.+...    -..|..+..+  |++|+..+. ..|.|-.+..+.......  .. 
T Consensus        31 n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~--~~-  105 (452)
T 3pbp_A           31 NGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV--SI-  105 (452)
T ss_dssp             TTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH--HH-
T ss_pred             CCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc--cc-
Confidence            4555555543 67887787654444444332    1246667776  777777765 589998887432110000  00 


Q ss_pred             cccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-----CeEEEecCCCcEEEEEcCCc--eeeeecc------
Q 018591           99 TTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-----GLIYSGSWDKTLKVWRVADL--KCLESIK------  165 (353)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~l~~~~~dg~v~iwd~~~~--~~~~~~~------  165 (353)
                      . .......      ....  +..  .....+|..+.|+|     ..|++-..|+.|++||+...  ++. .++      
T Consensus       106 ~-~~~q~~t------y~l~--~~~--~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f  173 (452)
T 3pbp_A          106 Q-DAFQIFH------YSID--EEE--VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF  173 (452)
T ss_dssp             H-HTTEEEE------EEGG--GCC----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE
T ss_pred             c-cccceeE------EEcC--Ccc--cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc
Confidence            0 0000000      0000  000  12467899999999     68999999999999999752  222 221      


Q ss_pred             ---ccCcceEEEEEeCC--eEEE--EcCCCcEEEEe
Q 018591          166 ---AHDDAVNGLVASKG--IVYS--ASADGKIKAWG  194 (353)
Q Consensus       166 ---~~~~~v~~i~~~~~--~l~~--~~~dg~i~iwd  194 (353)
                         .....|.+++|.++  .|+.  .+.+|.|+-.-
T Consensus       174 g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          174 GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence               12367889999444  4444  55788887653

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=93.48  E-value=2.8  Score=34.67  Aligned_cols=297  Identities=9%  Similarity=0.061  Sum_probs=154.8

Q ss_pred             ccCceEEEEECCcEEEEEeCCCcEEEEeCCC-ce----------eeEEecc-CceeeEEEEEeCCEEEEecCC-CcEEEE
Q 018591           15 HVGSVSSLALCGEFILSASQGKDIIVWQQPD-LR----------MFTKFGH-GDGSVKAVVTVGNKVFTAHQD-SRIRVW   81 (353)
Q Consensus        15 h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~-~~----------~~~~~~~-~~~~v~~~~~~~~~l~s~~~d-g~i~~w   81 (353)
                      -...|..|+.-....+.-..||.|..|-... ++          ....+.. ....|..++.-..+.+....+ +.|..|
T Consensus        14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w   93 (406)
T 4d9s_A           14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW   93 (406)
T ss_dssp             -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred             CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence            3457888888767777777899999996432 11          1112211 123577777665555555555 489999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc-e-
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL-K-  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~-~-  159 (353)
                      -.......     .. ......         .     .+..+..-....|..++......++-..||.|+.|-.... + 
T Consensus        94 G~n~~GqL-----G~-g~~~~~---------~-----~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqL  153 (406)
T 4d9s_A           94 GWGDFGRL-----GH-GNSSDL---------F-----TPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQL  153 (406)
T ss_dssp             ECCGGGTT-----CS-SSCCCE---------E-----EEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred             cCCCCcCC-----CC-CCCCcc---------c-----cceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccC
Confidence            75432210     00 000000         0     0000000123367777777667777788999999975431 1 


Q ss_pred             ---------eeeeccc-cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCc------ccccceeeeeccCCceeeEEEEc
Q 018591          160 ---------CLESIKA-HDDAVNGLVASKGIVYSASADGKIKAWGKELGKS------HCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       160 ---------~~~~~~~-~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                               ....+.. ....|..++......++...+|.|+.|-.....+      ................+..++..
T Consensus       154 G~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G  233 (406)
T 4d9s_A          154 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG  233 (406)
T ss_dssp             CSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC
T ss_pred             CCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC
Confidence                     1111111 1336778887667777778899999996432210      00001111111112223444443


Q ss_pred             CCCCeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc---
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK---  292 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---  292 (353)
                        ..+.++-..+|.|+.|-....-.        ...+..........+..++.-..+.++-..||.|+.|-.....+   
T Consensus       234 --~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~  311 (406)
T 4d9s_A          234 --WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV  311 (406)
T ss_dssp             --SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred             --CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCC
Confidence              33445556788888886433110        00111111112234666766666667777899999997543221   


Q ss_pred             --------eEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          293 --------LCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       293 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                              +..+..  .....|..++....      ..+.-..||.|..|-.....+
T Consensus       312 g~~~~~~~p~~v~~--~~~~~v~~va~G~~------hs~alt~~G~v~~wG~n~~Gq  360 (406)
T 4d9s_A          312 GNNLDQCSPVQVRF--PDDQKVVQVSCGWR------HTLAVTERNNVFAWGRGTNGQ  360 (406)
T ss_dssp             SSSSCEEEEEEECC--GGGCCEEEEEECSS------EEEEEETTSCEEEEECCTTST
T ss_pred             CCCCCCccCEEEec--cCCCcEEEEEeCCC------eEEEEeCCCCEEEecCCCCCc
Confidence                    111211  12235777776644      444445789999997665433

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.36  E-value=2.6  Score=33.94  Aligned_cols=151  Identities=15%  Similarity=0.048  Sum_probs=77.0

Q ss_pred             CcceEEEEE-eCCeEEEEcC-CCcEEEEeCCCCCcccccce-eeeeccCCceeeEEEEcCC---CCeEEee---cCCCcE
Q 018591          168 DDAVNGLVA-SKGIVYSASA-DGKIKAWGKELGKSHCHSLK-GILEGHKDVSLNSVVVSDD---GKWVYGG---GSDGFV  238 (353)
Q Consensus       168 ~~~v~~i~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i  238 (353)
                      -...+.|++ +++.++.+.. .|.|++++...+........ .......... ..++++|+   +..|+..   ..++.|
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gl-lGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGL-LGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSE-EEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCc-eeeEeccccccCCEEEEEEecCCCCEE
Confidence            345678888 5555665555 89999998665541100000 1112223344 89999995   3444432   234566


Q ss_pred             EEeeccccc-----c--ceeeeee---ccccceeEEEEEEcCcEEEEecC-------------CCeEEEEecCCCc---c
Q 018591          239 MGWEGNVEI-----V--RWKLACE---TKAHEMAVLCVCLVGEFLCSGSA-------------DKSIGIWKREAFG---K  292 (353)
Q Consensus       239 ~i~d~~~~~-----~--~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~-------------dg~i~iw~~~~~~---~  292 (353)
                      .-|......     .  ...+...   ...|...-..+.++|.+.++.+.             .|.|.-.+.+..-   +
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            666655421     0  1111111   23455556677777876666432             3455445544210   0


Q ss_pred             e---EEeccccCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          293 L---CRVGAITGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       293 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      +   ..+. -.+|. ....++|+|+    +.+.++-
T Consensus       190 Pf~~~~i~-a~G~R-Np~Gla~dp~----G~L~~~d  219 (347)
T 3das_A          190 PFPGSPVY-SYGHR-NVQGLAWDDK----QRLFASE  219 (347)
T ss_dssp             SSTTCCEE-EBCCS-BCCEEEECTT----CCEEEEE
T ss_pred             CCCCCeEE-eeCCC-CcceEEECCC----CCEEEEe
Confidence            0   0111 12454 3567899997    6655543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.80  E-value=3.2  Score=33.50  Aligned_cols=103  Identities=10%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecc---ccCcceEEEEEeCC-----eEEEEcCC------CcEEEE
Q 018591          129 DSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIK---AHDDAVNGLVASKG-----IVYSASAD------GKIKAW  193 (353)
Q Consensus       129 ~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~-----~l~~~~~d------g~i~iw  193 (353)
                      ..-..++|.+ ..++++..+|.|++++-.+.+.+..+.   ........|+++++     .++.+...      +.|..+
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~  110 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL  110 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence            3456899988 567777778999999822222222221   12456788999543     55554432      567788


Q ss_pred             eCCCCCcc-cccceeeee---ccCCceeeEEEEcCCCCeEEee
Q 018591          194 GKELGKSH-CHSLKGILE---GHKDVSLNSVVVSDDGKWVYGG  232 (353)
Q Consensus       194 d~~~~~~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~  232 (353)
                      +....... ...+...+.   ...... ..++|.|+|.+.++.
T Consensus       111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~-~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          111 RHLGERGVLDRVVLDGIPARPHGLHSG-GRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EECSSCEEEEEEEEEEECCCTTCCCCC-CCEEECTTSCEEEEC
T ss_pred             EeCCCCcCceEEEEEeCCCCCCCCcCC-ceEEECCCCCEEEEE
Confidence            77643210 011111122   111223 689999999766654

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=92.69  E-value=3.7  Score=33.93  Aligned_cols=251  Identities=12%  Similarity=0.091  Sum_probs=131.3

Q ss_pred             ceEEEEECCcEEEEEeCC-CcEEEEeCCCc---------e--eeEEecc-CceeeEEEEEeCCEEEEecCCCcEEEEEcc
Q 018591           18 SVSSLALCGEFILSASQG-KDIIVWQQPDL---------R--MFTKFGH-GDGSVKAVVTVGNKVFTAHQDSRIRVWKVS   84 (353)
Q Consensus        18 ~v~~~~~~~~~l~s~~~d-g~v~vwd~~~~---------~--~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~   84 (353)
                      .|..|+......+.-..| +.|+.|-....         .  ....+.. ....|..++.-..+.+....||.|..|-..
T Consensus        69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n  148 (406)
T 4d9s_A           69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN  148 (406)
T ss_dssp             CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred             CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC
Confidence            677777765554444555 59999953221         0  1111111 223577777667777778899999999865


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce-----
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK-----  159 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~-----  159 (353)
                      ...+.-.     -.....          .     .+..+..-....|..++......++-..+|.|+.|-....-     
T Consensus       149 ~~GqLG~-----g~~~~~----------~-----~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g  208 (406)
T 4d9s_A          149 QNGQLGL-----GDTEDS----------L-----VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG  208 (406)
T ss_dssp             TTSTTCS-----SSCCCE----------E-----EEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred             CCccCCC-----CCCCCc----------c-----cceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCC
Confidence            4321000     000000          0     00000001123577777766667777789999999643211     


Q ss_pred             ------eeeecc-ccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc------cccceeeeeccCCceeeEEEEcCCC
Q 018591          160 ------CLESIK-AHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH------CHSLKGILEGHKDVSLNSVVVSDDG  226 (353)
Q Consensus       160 ------~~~~~~-~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~  226 (353)
                            ....+. .....|..++......++...+|.|+.|-.....+.      .......+.......|..++..  .
T Consensus       209 ~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~  286 (406)
T 4d9s_A          209 DRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--W  286 (406)
T ss_dssp             SSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--S
T ss_pred             CCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--C
Confidence                  011111 123467777776666677778999999965432110      0001111111122223444443  3


Q ss_pred             CeEEeecCCCcEEEeeccccc--------cceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCC
Q 018591          227 KWVYGGGSDGFVMGWEGNVEI--------VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       227 ~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .+.++-..||.|..|-....-        ....+..........+..++.-..+.++-..+|.|+.|=....
T Consensus       287 ~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~  358 (406)
T 4d9s_A          287 RHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTN  358 (406)
T ss_dssp             SEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred             CEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCC
Confidence            345555678888888543310        0011111111123457777776677777778999999976543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.15  E-value=5.1  Score=32.33  Aligned_cols=62  Identities=11%  Similarity=0.122  Sum_probs=38.5

Q ss_pred             cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEcc-CCCeEEEEEc
Q 018591          269 VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGS-LDKSLRVWWV  336 (353)
Q Consensus       269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~-~dg~i~iw~~  336 (353)
                      ++.++++....+.|...+++.++.......+......+..+++.|+    |.++++.. .+|  +||.+
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd----G~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD----GYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT----SCEEEEECSTTE--EEEEE
T ss_pred             CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC----CcEEEEEeCCCC--EEEEE
Confidence            3677777777888888888754322111112223357999999999    87666533 455  44554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.91  E-value=5.4  Score=32.18  Aligned_cols=107  Identities=12%  Similarity=0.017  Sum_probs=53.9

Q ss_pred             ceEEEEE-eCCe-EEEEcCCCcEEEEeCCCCCccc-ccceeeeeccCCceeeEEEEcCC---CCeEEeecC--------C
Q 018591          170 AVNGLVA-SKGI-VYSASADGKIKAWGKELGKSHC-HSLKGILEGHKDVSLNSVVVSDD---GKWVYGGGS--------D  235 (353)
Q Consensus       170 ~v~~i~~-~~~~-l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~--------d  235 (353)
                      ....|++ +++. ++.+...|.|++++........ .............. ..++++|+   +..|+....        .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~-~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGL-LDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSE-EEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCc-eeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            4578888 5556 7777788999998853221000 00001111122333 78999996   445544422        2


Q ss_pred             CcEEEeecccccc----ceeeeeec-----cccceeEEEEEEcCcEEEEec
Q 018591          236 GFVMGWEGNVEIV----RWKLACET-----KAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       236 g~i~i~d~~~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~  277 (353)
                      ..|..|+......    ...+...+     ..|...-..+.++|.+.++-+
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            3566666543210    11111111     234455567777886665543

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=90.77  E-value=1.6  Score=38.78  Aligned_cols=71  Identities=8%  Similarity=0.187  Sum_probs=47.3

Q ss_pred             CceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCce-------------eeEEEEEeCCEEEE--ecCCCcEEEE
Q 018591           17 GSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-------------SVKAVVTVGNKVFT--AHQDSRIRVW   81 (353)
Q Consensus        17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-------------~v~~~~~~~~~l~s--~~~dg~i~~w   81 (353)
                      ..|.++.++..++++-+.|.++|+||+.+++++.+..-...             +-.-+..-+.++++  -..+|..++|
T Consensus       222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~  301 (729)
T 3f7f_A          222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMG  301 (729)
T ss_dssp             CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEE
T ss_pred             ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEE
Confidence            46888888889999999999999999999998877643111             10111112444442  2356788999


Q ss_pred             EcccCc
Q 018591           82 KVSRSS   87 (353)
Q Consensus        82 ~~~~~~   87 (353)
                      .+....
T Consensus       302 ~l~~~~  307 (729)
T 3f7f_A          302 TLLVDS  307 (729)
T ss_dssp             EEEC--
T ss_pred             EEEEcC
Confidence            886543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.62  E-value=5.8  Score=32.04  Aligned_cols=54  Identities=13%  Similarity=0.081  Sum_probs=35.4

Q ss_pred             cCcEEEEecCCCeEEEEecCCCcceEEecc-ccCCCcCeEEEEeecCCCCCCeEEEEcc
Q 018591          269 VGEFLCSGSADKSIGIWKREAFGKLCRVGA-ITGHEGPVKCLQASPNAVGGGFLLYSGS  326 (353)
Q Consensus       269 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~l~s~~  326 (353)
                      +|.++++....+.|...++........... +.+....+..+++.||    |.++++..
T Consensus       276 ~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD----G~lyv~~~  330 (354)
T 3a9g_A          276 RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD----GGILISTS  330 (354)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT----SCEEEEEC
T ss_pred             CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC----CcEEEEEe
Confidence            477777777788899888875432211112 2233457899999999    87766654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.45  E-value=7.2  Score=32.82  Aligned_cols=105  Identities=12%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             cceEEEEE-eCCeEEEEcCCC-cEEEEeCCCCCcccccceeeeec------cCCceeeEEEEcCC---CCeEEeecC---
Q 018591          169 DAVNGLVA-SKGIVYSASADG-KIKAWGKELGKSHCHSLKGILEG------HKDVSLNSVVVSDD---GKWVYGGGS---  234 (353)
Q Consensus       169 ~~v~~i~~-~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~---  234 (353)
                      ...+.|++ +++.++++...+ .|++++..++...   ....+..      ..... ..++|+|+   +..|+....   
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---~~~~~~~~~~~~~g~~Gl-lgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---TVFQVPEIVNDADGQNGL-LGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCCTTSSCSE-EEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---EEecCCccccccCCCCce-eEEEECCCcCcCCEEEEEEeccc
Confidence            34568888 555666666665 6888876554411   1111111      12333 78999995   555554432   


Q ss_pred             ----------CCcEEEeecccccc----ceeeeee---ccccceeEEEEEEcCcEEEEec
Q 018591          235 ----------DGFVMGWEGNVEIV----RWKLACE---TKAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       235 ----------dg~i~i~d~~~~~~----~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~  277 (353)
                                ...|..|+......    ...+...   ...|...-+.+.++|.+.++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                      23455565533210    0111111   1235556666667787666544

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=90.13  E-value=7.9  Score=32.78  Aligned_cols=254  Identities=12%  Similarity=0.099  Sum_probs=132.4

Q ss_pred             CceEEEEECCcEEEEEeCCCcEEEEeCCCc-ee---------------------------------eEEecc-------C
Q 018591           17 GSVSSLALCGEFILSASQGKDIIVWQQPDL-RM---------------------------------FTKFGH-------G   55 (353)
Q Consensus        17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~-~~---------------------------------~~~~~~-------~   55 (353)
                      ..|..|+.-+...+.-..||.|..|-.... ++                                 ...+..       .
T Consensus        67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~  146 (473)
T 3of7_A           67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE  146 (473)
T ss_dssp             TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred             CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence            468888887777777778999999954221 00                                 011111       1


Q ss_pred             ceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591           56 DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT  135 (353)
Q Consensus        56 ~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  135 (353)
                      ...|..++......+....+|.|..|-.......   .+.........             ...+..+-.-....|..++
T Consensus       147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~G---qLG~~~~~~~~-------------~~~P~~v~~l~~~~i~~va  210 (473)
T 3of7_A          147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEG---ILGFYQDKIKI-------------QKTPWKVPTFSKYNIVQLA  210 (473)
T ss_dssp             TCCEEEEEECSSEEEEEETTSCEEEEECEEETTE---EEESBTTTBSC-------------EEEEEECCCCCSSCEEEEE
T ss_pred             CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCC---ccCCCCCCCcc-------------ccCcEEccccCCCCEEEEE
Confidence            2456777766777777788999999986311100   00000000000             0000000001123577787


Q ss_pred             EeCCeEEEecCCCcEEEEEcCCceeee----------ecc---ccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc-
Q 018591          136 VYNGLIYSGSWDKTLKVWRVADLKCLE----------SIK---AHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH-  201 (353)
Q Consensus       136 ~~~~~l~~~~~dg~v~iwd~~~~~~~~----------~~~---~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~-  201 (353)
                      ......++-..+|.|+.|-....-.+.          .+.   .....|..++......++...+|.|+.|-.....+. 
T Consensus       211 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG  290 (473)
T 3of7_A          211 PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCG  290 (473)
T ss_dssp             ECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTC
T ss_pred             ecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcC
Confidence            777777777889999999754321110          000   011457777776666677778999999964322100 


Q ss_pred             ---------cccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc---------------------ee
Q 018591          202 ---------CHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR---------------------WK  251 (353)
Q Consensus       202 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------~~  251 (353)
                               .......+.......|..++...  ...++-..+|.|..|-....-..                     ..
T Consensus       291 ~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~  368 (473)
T 3of7_A          291 VSEDVEDGALVTKPKRLALPDNVVIRSIAAGE--HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVP  368 (473)
T ss_dssp             CCSCCCTTCEEEEEEECCCCTTCCEEEEEECS--SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEE
T ss_pred             CCCcccCCceeeccccccccCCccEEEEEeCC--CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeec
Confidence                     00001111111122234555433  34444467888888864321000                     00


Q ss_pred             eeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591          252 LACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       252 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      ....+.. ...+..++.-..+.++-..+|.|+.|=...
T Consensus       369 ~P~~v~~-~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~  405 (473)
T 3of7_A          369 LPTKLNN-VPKFKSVAAGSHHSVAVAQNGIAYSWGFGE  405 (473)
T ss_dssp             EEEECCS-SCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             cCcccCC-CCceEEEEeCCCeEEEEeCCCcEEEeeCCC
Confidence            0111111 115667776666667778899999997654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.00  E-value=11  Score=31.69  Aligned_cols=107  Identities=9%  Similarity=0.100  Sum_probs=57.1

Q ss_pred             CceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeecc------ccceeEEEEEEc-----CcEEEEecC----
Q 018591          214 DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETK------AHEMAVLCVCLV-----GEFLCSGSA----  278 (353)
Q Consensus       214 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~~~-----~~~l~~~~~----  278 (353)
                      ..+ ..++|.|+|+++++-...+.|++++...+..  .....+.      ........++++     +..|.....    
T Consensus        27 ~~P-~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~--~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           27 NKP-HALLWGPDNQIWLTERATGKILRVNPESGSV--KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             SSE-EEEEECTTSCEEEEETTTCEEEEECTTTCCE--EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCc-eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE--eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            344 8999999999777765555788887654321  1111111      123344555554     444444332    


Q ss_pred             ---------CCeEEEEecCCCc----ceEEec-ccc-CCCcCeEEEEeecCCCCCCeEEEEccC
Q 018591          279 ---------DKSIGIWKREAFG----KLCRVG-AIT-GHEGPVKCLQASPNAVGGGFLLYSGSL  327 (353)
Q Consensus       279 ---------dg~i~iw~~~~~~----~~~~~~-~~~-~h~~~v~~~~~~~~~~~~~~~l~s~~~  327 (353)
                               ...|.-|+.....    ....+. .+. ........|+|.||    |.+.++.+.
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD----G~Lyv~~Gd  163 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD----QKIYYTIGD  163 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT----SCEEEEECC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC----CeEEEEECC
Confidence                     2356666654321    111221 121 12235789999999    887776553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.29  E-value=17  Score=31.50  Aligned_cols=72  Identities=15%  Similarity=0.014  Sum_probs=45.9

Q ss_pred             eEEEEcCCCCeEEeec-CCCcEEEeecccccc---------ceeeeeeccccc-eeEEEEEEcCcEEEEecCCCeEEEEe
Q 018591          218 NSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIV---------RWKLACETKAHE-MAVLCVCLVGEFLCSGSADKSIGIWK  286 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~dg~i~iw~  286 (353)
                      ..+.++|||+++++++ .+.++.++|++.-..         ......+..... ..-+.+..+|.-..+-.-|..|..|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            7899999999987765 578999999885311         111111222111 12234444476666777899999999


Q ss_pred             cCC
Q 018591          287 REA  289 (353)
Q Consensus       287 ~~~  289 (353)
                      +..
T Consensus       406 i~~  408 (638)
T 3sbq_A          406 MEE  408 (638)
T ss_dssp             HHH
T ss_pred             ccH
Confidence            875

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=83.82  E-value=17  Score=30.00  Aligned_cols=252  Identities=9%  Similarity=0.025  Sum_probs=133.1

Q ss_pred             eeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEE
Q 018591           57 GSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTV  136 (353)
Q Consensus        57 ~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  136 (353)
                      ..|..++.-..+.+....||.|..|-.....+.-....   ....               ...+..+  .-...|..++.
T Consensus        59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~---~~~~---------------~~~P~~v--~l~~~i~~va~  118 (413)
T 1a12_A           59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTS---VEGS---------------EMVPGKV--ELQEKVVQVSA  118 (413)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCC---STTG---------------GGSCEEC--CCCSCEEEEEE
T ss_pred             CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCC---CCcc---------------ccCCeEe--cCCCcEEEEec
Confidence            45777776677777778899999998654321000000   0000               0000111  11236777777


Q ss_pred             eCCeEEEecCCCcEEEEEc--CC-ce------------eeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc
Q 018591          137 YNGLIYSGSWDKTLKVWRV--AD-LK------------CLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH  201 (353)
Q Consensus       137 ~~~~l~~~~~dg~v~iwd~--~~-~~------------~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~  201 (353)
                      .....++-..||.|+.|-.  +. ++            +...  .....|..++.-....+.-..||.|..|-.....+.
T Consensus       119 G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqL  196 (413)
T 1a12_A          119 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL  196 (413)
T ss_dssp             CSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred             CCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCcc
Confidence            6666777788999999974  21 11            1111  123567777776667777778999999965432110


Q ss_pred             -c-----------------ccceeeeecc-----CCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc----------
Q 018591          202 -C-----------------HSLKGILEGH-----KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV----------  248 (353)
Q Consensus       202 -~-----------------~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------  248 (353)
                       .                 ..+ ......     ....|..++....  +.++-..+|.|+.|-....-.          
T Consensus       197 G~~~~~~~~~~~~~~~~~~~~P-~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~  273 (413)
T 1a12_A          197 GRVPELFANRGGRQGLERLLVP-KCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESCF  273 (413)
T ss_dssp             CSCGGGTSSSCGGGGHHHHHSC-EECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCEE
T ss_pred             CCCccccccccccccccccccC-ceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCccc
Confidence             0                 001 001110     1122355555433  444455788898886543100          


Q ss_pred             ceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc---------eEEeccccCCCcCeEEEEeecCCCCCC
Q 018591          249 RWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK---------LCRVGAITGHEGPVKCLQASPNAVGGG  319 (353)
Q Consensus       249 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~  319 (353)
                      ....+..+......+..++....+.++-..||.|+.|-.....+         ......+.. ...|..++....     
T Consensus       274 ~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~-----  347 (413)
T 1a12_A          274 IPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGAS-----  347 (413)
T ss_dssp             EEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSS-----
T ss_pred             ccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcc-----
Confidence            01111111211234777777666667777899999997543211         001111111 126777777654     


Q ss_pred             eEEEEccCCCeEEEEEcCCCC
Q 018591          320 FLLYSGSLDKSLRVWWVSKQS  340 (353)
Q Consensus       320 ~~l~s~~~dg~i~iw~~~~~~  340 (353)
                       ..+.-..||.|..|-.....
T Consensus       348 -hs~alt~~G~v~~wG~n~~g  367 (413)
T 1a12_A          348 -VGYAVTKDGRVFAWGMGTNY  367 (413)
T ss_dssp             -EEEEEETTSCEEEEECCTTS
T ss_pred             -eEEEEeCCCCEEEecCCCCC
Confidence             44444578999999766543

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=83.79  E-value=17  Score=29.99  Aligned_cols=248  Identities=12%  Similarity=0.044  Sum_probs=133.1

Q ss_pred             CceEEEEECCcEEEEEeCCCcEEEEeCCC-ce------------eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEc
Q 018591           17 GSVSSLALCGEFILSASQGKDIIVWQQPD-LR------------MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus        17 ~~v~~~~~~~~~l~s~~~dg~v~vwd~~~-~~------------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~   83 (353)
                      ..|..|+......+.-..||.|..|-... ++            ....+.. ...|..++.-....+....||.|..|-.
T Consensus        59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~~~i~~va~G~~hs~alt~~G~v~~wG~  137 (413)
T 1a12_A           59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-QEKVVQVSAGDSHTAALTDDGRVFLWGS  137 (413)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-CSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-CCcEEEEecCCCeEEEEcCCCcEEEeeC
Confidence            56777777666666777899999996432 11            0111111 2367777666777777888999999975


Q ss_pred             --ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceee
Q 018591           84 --SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCL  161 (353)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  161 (353)
                        +...     .+........              ...+..+  .....|..++.-....++-..||.|+.|-....-.+
T Consensus       138 ~~n~~G-----qlG~~~~~~~--------------~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqL  196 (413)
T 1a12_A          138 FRDNNG-----VIGLLEPMKK--------------SMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL  196 (413)
T ss_dssp             EEETTE-----EEESSBBTBC--------------EEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred             CcCCCC-----ccCcCCcccc--------------ccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCcc
Confidence              2211     0100000000              0001111  123467777777766777778999999975431100


Q ss_pred             ----------------------eeccc------cCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc------ccccee
Q 018591          162 ----------------------ESIKA------HDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH------CHSLKG  207 (353)
Q Consensus       162 ----------------------~~~~~------~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~  207 (353)
                                            ..+..      ....|..++......++...+|.|+.|-.....+.      ......
T Consensus       197 G~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~  276 (413)
T 1a12_A          197 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQ  276 (413)
T ss_dssp             CSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEE
T ss_pred             CCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccE
Confidence                                  00110      23457777776666666678999999965432110      000001


Q ss_pred             eeeccCC--ceeeEEEEcCCCCeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEec
Q 018591          208 ILEGHKD--VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGS  277 (353)
Q Consensus       208 ~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  277 (353)
                      .+.....  ..|..++..  ..+.++-..+|.|+.|-....-.        .......... ...+..++.-..+.++-.
T Consensus       277 ~v~~l~~~~~~v~~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~hs~alt  353 (413)
T 1a12_A          277 NLTSFKNSTKSWVGFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGASVGYAVT  353 (413)
T ss_dssp             ECGGGCCTTCCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSSEEEEEE
T ss_pred             EchhccCCCceEEEEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcceEEEEe
Confidence            1111111  113444443  33445556788899986543100        0011111111 125777777667777777


Q ss_pred             CCCeEEEEecCC
Q 018591          278 ADKSIGIWKREA  289 (353)
Q Consensus       278 ~dg~i~iw~~~~  289 (353)
                      .||.|+.|-...
T Consensus       354 ~~G~v~~wG~n~  365 (413)
T 1a12_A          354 KDGRVFAWGMGT  365 (413)
T ss_dssp             TTSCEEEEECCT
T ss_pred             CCCCEEEecCCC
Confidence            899999997654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.96  E-value=34  Score=32.08  Aligned_cols=37  Identities=19%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      .+.+++..++    ..++++-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~----~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLST----YNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETT----TTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCC----CcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677777777    789999999999999999999877653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=80.94  E-value=21  Score=29.10  Aligned_cols=129  Identities=9%  Similarity=0.008  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCCcEEEEeCCC-CCcccccceeeeeccCCceeeEEEEcC-CCCeEEeecCCC----cEEEeecccccccee
Q 018591          178 KGIVYSASADGKIKAWGKEL-GKSHCHSLKGILEGHKDVSLNSVVVSD-DGKWVYGGGSDG----FVMGWEGNVEIVRWK  251 (353)
Q Consensus       178 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg----~i~i~d~~~~~~~~~  251 (353)
                      ++.|++++..| +.+++... +. .   -...........+.++++.| +...+.++...|    .|...  ..+-..+.
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~-~---W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~   94 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARR-T---WELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWT   94 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSC-S---EEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCE
T ss_pred             CCEEEEEecCc-eEEEECCCCCC-C---ceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCce
Confidence            44777777766 55555432 21 0   11110112234469999998 333444454444    34333  22212233


Q ss_pred             eeee---ccc--------cceeEEEEEEc----CcEEEEecCCCeEEEEecCCCcceEEeccccC---------------
Q 018591          252 LACE---TKA--------HEMAVLCVCLV----GEFLCSGSADKSIGIWKREAFGKLCRVGAITG---------------  301 (353)
Q Consensus       252 ~~~~---~~~--------~~~~v~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---------------  301 (353)
                      ....   +..        ....+.++.++    ...+.++...+.|...+ +.++....+.....               
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~  173 (394)
T 3b7f_A           95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGT  173 (394)
T ss_dssp             ECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred             ECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCC
Confidence            2221   111        11246566654    56666666666555443 22333334432211               


Q ss_pred             -CCcCeEEEEeecC
Q 018591          302 -HEGPVKCLQASPN  314 (353)
Q Consensus       302 -h~~~v~~~~~~~~  314 (353)
                       ....+.+|.++|.
T Consensus       174 ~~~~~i~~i~~d~~  187 (394)
T 3b7f_A          174 PDGPKMHSILVDPR  187 (394)
T ss_dssp             CCCCEEEEEEECTT
T ss_pred             CCCCceeEEEECCC
Confidence             2235789999874

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=80.14  E-value=23  Score=28.96  Aligned_cols=251  Identities=8%  Similarity=0.024  Sum_probs=128.6

Q ss_pred             ceEEEEECCcEEEEEeCCCcEEEEeCCCc-----------eeeEEecc-CceeeEEEEEe--CCEEEEecCCCcEEEEEc
Q 018591           18 SVSSLALCGEFILSASQGKDIIVWQQPDL-----------RMFTKFGH-GDGSVKAVVTV--GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus        18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~-----------~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~   83 (353)
                      .|..|+......+.-..||.|..|-....           .....+.. ....+..+...  ....+....||.|..|-.
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~  133 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE  133 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence            45556555666666778999999963321           11112221 12234444554  567777788999999976


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCc-----
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADL-----  158 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~-----  158 (353)
                      ....+.-     .-... ..              ..+..+-.-....|..++......++-..||.|+.|-....     
T Consensus       134 n~~GqLG-----~g~~~-~~--------------~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~  193 (389)
T 3kci_A          134 AEDGKLG-----HGNRS-PC--------------DRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH  193 (389)
T ss_dssp             CGGGTTC-----SSSCC-CE--------------EEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred             CCCCcCC-----CCCCc-cC--------------cCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCC
Confidence            5422100     00000 00              00000000112357777776666677778999999975431     


Q ss_pred             -------eeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCc------ccccceeeeeccCCceeeEEEEc
Q 018591          159 -------KCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKS------HCHSLKGILEGHKDVSLNSVVVS  223 (353)
Q Consensus       159 -------~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~  223 (353)
                             .+...-......|..++..  ....+....||.|..|-.....+      ................|..++..
T Consensus       194 ~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G  273 (389)
T 3kci_A          194 SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG  273 (389)
T ss_dssp             SSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE
T ss_pred             CCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC
Confidence                   1111111123457777763  35666777899999995432110      00001111111122123445444


Q ss_pred             CCCCeEEeecCCCcEEEeeccccc--------cceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCC
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEI--------VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .  .+.++-..+|.|..|-....-        ....+..........+..++....+.++-..||.|+.|-....
T Consensus       274 ~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~  346 (389)
T 3kci_A          274 S--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDE  346 (389)
T ss_dssp             T--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTT
T ss_pred             C--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCC
Confidence            3  344555678889998654311        0011111111122456777776677777788999999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.5 bits (202), Expect = 3e-18
 Identities = 45/347 (12%), Positives = 91/347 (26%), Gaps = 72/347 (20%)

Query: 7   RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVT 64
           R+   L GH+  + ++        ++SASQ   +I+W                 V     
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 65  VGNKVFTAHQDSR-----------------IRVWKVSRSSENVFRLVDTLPTTKDYLGKF 107
             +  + A                       R         +  R +D            
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 108 MKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAH 167
               +    ++               L     L  SG+ D + K+W V +  C ++   H
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 168 DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK 227
           +  +N                                              ++    +G 
Sbjct: 226 ESDIN----------------------------------------------AICFFPNGN 239

Query: 228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR 287
               G  D     ++   +      + +     +  +     G  L +G  D +  +W  
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 288 EAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
               +      + GH+  V CL  + +    G  + +GS D  L++W
Sbjct: 300 LKADRAGV---LAGHDNRVSCLGVTDD----GMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 11/117 (9%)

Query: 226 GKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIG 283
            +    G  D     W+    +           HE  +  +C    G    +GS D +  
Sbjct: 196 TRLFVSGACDASAKLWD----VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

Query: 284 IWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340
           ++   A  +     +       +  +  S +    G LL +G  D +  VW   K  
Sbjct: 252 LFDLRADQE-LMTYSHDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKAD 303

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 1e-17
 Identities = 67/346 (19%), Positives = 115/346 (33%), Gaps = 28/346 (8%)

Query: 4   KSHRSLAVLSGHVGSV-SSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAV 62
              +S  VL GH   V + L  CG  I+S S    + VW     +         G V + 
Sbjct: 4   GELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63

Query: 63  VTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN--------YV 114
               N + +   D  ++VW              T      +L +    S         + 
Sbjct: 64  QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 115 QTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGL 174
                   + + H  ++ C+      + SG++D  +KVW      CL +++ H + V  L
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 183

Query: 175 VASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS 234
                 V S S D  I+ W  E G                    +  +      +  G +
Sbjct: 184 QFDGIHVVSGSLDTSIRVWDVETGNCIHT--------LTGHQSLTSGMELKDNILVSGNA 235

Query: 235 DGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC 294
           D  V  W+         L    K H+ AV C+     F+ + S D ++ +W  +    + 
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 294

Query: 295 RVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKS----LRVW 334
            +  +   G  G V  ++AS        +   GS + +    L V 
Sbjct: 295 NLVTLESGGSGGVVWRIRASNT----KLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 4e-09
 Identities = 60/215 (27%), Positives = 79/215 (36%), Gaps = 22/215 (10%)

Query: 127 HADSI-SCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSAS 185
           H D + +CL      I SGS D TLKVW     KCL ++  H   V        I+ S S
Sbjct: 15  HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 186 ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245
            D  +K W  E G+                +     +    K V  G  D  +  W+   
Sbjct: 75  TDRTLKVWNAETGECIHT--------LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126

Query: 246 EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP 305
                 L      H  AV CV   G  + SG+ D  + +W  E    L     + GH   
Sbjct: 127 GQCLHVLMG----HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT---LQGHTNR 179

Query: 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340
           V  LQ           + SGSLD S+RVW V   +
Sbjct: 180 VYSLQFDGI------HVVSGSLDTSIRVWDVETGN 208

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 5e-08
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 40/204 (19%)

Query: 1   MPCKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVK 60
              ++   L  L GH   V SL   G  ++S S    I VW                   
Sbjct: 162 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221

Query: 61  AVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHH 120
            +    N + + + DS +++W +                                     
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKT-----------------------------GQCLQT 252

Query: 121 KRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA-----HDDAVNGLV 175
            +   +H  +++CL      + + S D T+K+W +   + + ++           V  + 
Sbjct: 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312

Query: 176 ASKG--IVYSASADG----KIKAW 193
           AS    +    S +G    K+   
Sbjct: 313 ASNTKLVCAVGSRNGTEETKLLVL 336

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (193), Expect = 3e-17
 Identities = 58/343 (16%), Positives = 110/343 (32%), Gaps = 57/343 (16%)

Query: 11  VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNK 68
            LSGH   V+ +        ++SAS+   I VW                SV+ +    + 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 69  VFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHA 128
              A   + + +           R +             M   +++ +    K + +   
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS-VSIMPNGDHIVSASRDKTIKMWEV 130

Query: 129 DSISCLTVYNG---------------LIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNG 173
            +  C+  + G               LI S S D+T++VW VA  +C   ++ H   V  
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 174 LVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG 233
           +                 +W  E   S      G           +      G ++  G 
Sbjct: 191 I-----------------SWAPESSYSSISEATGS---------ETKKSGKPGPFLLSGS 224

Query: 234 SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFG 291
            D  +  W+ +              H+  V  V     G+F+ S + DK++ +W  +   
Sbjct: 225 RDKTIKMWDVS----TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280

Query: 292 KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
            +     +  HE  V  L            + +GS+D++++VW
Sbjct: 281 CMKT---LNAHEHFVTSLDFHKT----APYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (150), Expect = 1e-11
 Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 20/222 (9%)

Query: 25  CGEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-GNKVFTAHQDSRIRVWK 82
            G+ I+SAS+ K I +W+         F GH +          G  + +   D  +RVW 
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

Query: 83  VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIY 142
           V+            L   +        +         +  +                 + 
Sbjct: 172 VAT-----KECKAELREHRHV-----VECISWAPESSYSSISEATGSETKKSGKPGPFLL 221

Query: 143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKS 200
           SGS DKT+K+W V+   CL ++  HD+ V G++   G   + S + D  ++ W  +  + 
Sbjct: 222 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR- 280

Query: 201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE 242
                   L  H+   + S+       +V  G  D  V  WE
Sbjct: 281 ----CMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 35/199 (17%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 1   MPCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS 58
              ++   +   +GH   V  +     G  I S S  + + VW         +       
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 59  VKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRR 118
           V+ +       +++  ++     K S               ++D   K    S  +    
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLS-----GSRDKTIKMWDVSTGMCLMT 242

Query: 119 HHKRLWIEHADSISCLTVY--NGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA 176
                 + H + +  +  +     I S + DKTL+VW   + +C++++ AH+  V  L  
Sbjct: 243 -----LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 177 SK--GIVYSASADGKIKAW 193
            K    V + S D  +K W
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 27/230 (11%)

Query: 127 HADSISCLTVY--NGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
           H   ++ +  +    ++ S S D T+KVW         ++K H D+V  +         A
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244
           S    +     +     C           D +++SV +  +G  +     D  +  WE  
Sbjct: 76  SCSADMTIKLWDFQGFECIRTM----HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304
                       +   M        G  + S S D+++ +W             +  H  
Sbjct: 132 TGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWVVATKECKAE---LREHRH 186

Query: 305 PVKCLQ----------------ASPNAVGGGFLLYSGSLDKSLRVWWVSK 338
            V+C+                  +  +   G  L SGS DK++++W VS 
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.5 bits (194), Expect = 4e-17
 Identities = 59/347 (17%), Positives = 104/347 (29%), Gaps = 29/347 (8%)

Query: 8   SLAVLSGHVGSVSSLAL--CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV 65
            L     H   V  +     GE++ +        V++  D  +  +      + K    +
Sbjct: 54  ELHKSLDHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENL 112

Query: 66  GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI 125
                 +       +  V  S +  F                 ++   +          +
Sbjct: 113 NTSSSPSSDLY---IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 126 EHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSAS 185
           ++  S   L   +G      WD       +                +G       + + S
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-----KYIAAGS 224

Query: 186 ADGKIKAWGKELGKSHC--HSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE- 242
            D  ++ W  E G       S      GHKD S+ SVV + DG+ V  G  D  V  W  
Sbjct: 225 LDRAVRVWDSETGFLVERLDSENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

Query: 243 -------GNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKL 293
                   +              H+  VL V      E++ SGS D+ +  W +++   L
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 294 CRVGAITGHEGPVKCLQASPNAVGG--GFLLYSGSLDKSLRVWWVSK 338
                + GH   V  +  +  +  G    +  +GS D   R+W   K
Sbjct: 344 LM---LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 21/171 (12%), Positives = 49/171 (28%), Gaps = 40/171 (23%)

Query: 1   MPCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGS 58
           +  +        +GH  SV S+     G+ ++S S  + + +W   +    +     +  
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 59  VKAVVTV--------------GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYL 104
              V  +                 + +  +D  +  W   +S   +  L           
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK-KSGNPLLML----------- 346

Query: 105 GKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRV 155
                       + H   +      + S L     +  +GS D   ++W+ 
Sbjct: 347 ------------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 5e-14
 Identities = 55/295 (18%), Positives = 92/295 (31%), Gaps = 24/295 (8%)

Query: 7   RSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVG 66
           + +   S     V  L    + I+S  +   I +W +  L          GSV  +    
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 67  NKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNY-----------VQ 115
             + T   DS +RVW V+        +              M  +               
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 116 TRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV 175
           T    +R+ + H  +++ +   +  I S S D+T+KVW  +  + + ++  H   +  L 
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 176 ASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD 235
               +V S S+D  I+ W  E G                   N  +VS        G  D
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS--------GAYD 237

Query: 236 GFVMGW-----EGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIW 285
           G +  W                      H   V  +      + S S D +I IW
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 35/306 (11%)

Query: 46  LRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSS--------ENVFRLVDTL 97
           L+           V  +     K+ +  +D+ I++W  +                 +   
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 98  PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD 157
                          +           I H +++  L   NG++ + S D+++ VW +A 
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 158 LKCL---ESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKD 214
              +     +  H  AVN +      + SAS D  IK W     +               
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT--------LNG 176

Query: 215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC 274
                  +    + V  G SD  +  W    +I         + HE  V C+    + + 
Sbjct: 177 HKRGIACLQYRDRLVVSGSSDNTIRLW----DIECGACLRVLEGHEELVRCIRFDNKRIV 232

Query: 275 SGSADKSIGIW------KREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLD 328
           SG+ D  I +W         A      +  +  H G V  LQ           + S S D
Sbjct: 233 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF------QIVSSSHD 286

Query: 329 KSLRVW 334
            ++ +W
Sbjct: 287 DTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 42/215 (19%), Positives = 80/215 (37%), Gaps = 18/215 (8%)

Query: 126 EHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSAS 185
           E +  + CL   +  I SG  D T+K+W    L+C   +  H  +V  L   + ++ + S
Sbjct: 13  ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72

Query: 186 ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNV 245
           +D  ++ W    G+                    + +  +   +     D  +  W+   
Sbjct: 73  SDSTVRVWDVNTGEMLNT--------LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 246 EIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGP 305
                        H  AV  V    +++ S S D++I +W       +     + GH+  
Sbjct: 125 PTDITL-RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT---LNGHKRG 180

Query: 306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQS 340
           + CLQ          L+ SGS D ++R+W +   +
Sbjct: 181 IACLQYRDR------LVVSGSSDNTIRLWDIECGA 209

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 50/254 (19%), Positives = 89/254 (35%), Gaps = 18/254 (7%)

Query: 4   KSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVV 63
            +     +L+GH GSV  L      I++ S    + VW      M     H   +V  + 
Sbjct: 43  NTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 102

Query: 64  TVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL 123
                + T  +D  I VW ++  ++   R V         +  F  +     +     ++
Sbjct: 103 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 162

Query: 124 W-----------IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN 172
           W             H   I+CL   + L+ SGS D T+++W +    CL  ++ H++ V 
Sbjct: 163 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222

Query: 173 GLVASKGIVYSASADGKIKAW----GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228
            +      + S + DGKIK W      +            L  H         +  D   
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR---LQFDEFQ 279

Query: 229 VYGGGSDGFVMGWE 242
           +     D  ++ W+
Sbjct: 280 IVSSSHDDTILIWD 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 1e-10
 Identities = 47/379 (12%), Positives = 108/379 (28%), Gaps = 37/379 (9%)

Query: 8   SLAVLSGHVGSVSSLALCGEFILSASQGKDIIVW-------QQPDLRMFTKFGHGDG--- 57
           +      H   + S++ C  F +S S    + VW       + P  + ++ F H  G   
Sbjct: 6   TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 58  -----SVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS- 111
                +++        V T      +  ++++R  E    + + L      + K    + 
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 112 --NYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDD 169
                  R    RL        + +  ++      +         +     +ES      
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 170 AVNGLVAS-KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKW 228
               +  S +G++ +   +G ++       +   +        +   S+ SV  S  G  
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245

Query: 229 VYGGGSDGFVMG------------WEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLC 274
           +                          +V     + +    AH   V+ +     GE LC
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305

Query: 275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
           S   D  +  W  +   ++     +  H   ++  +        G  L    +   ++  
Sbjct: 306 SAGWDGKLRFWDVKTKERITT---LNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFL 361

Query: 335 WVSKQSSTSDSEEKSIISC 353
               +S       +S+   
Sbjct: 362 KKGWRSGMGADLNESLCCV 380

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 33/213 (15%), Positives = 58/213 (27%), Gaps = 40/213 (18%)

Query: 158 LKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILE------- 210
           +    + KAHD  +  + A      S S DG +K W  +L  +     K           
Sbjct: 4   IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 211 GHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK--------LACETKAHEMA 262
            H DV       + +   V      G ++ +    E    K        L  + K H   
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 263 VLCVCLVGE-----FLCSGSADKSIGIWKREAFGKLCR---------------VGAITGH 302
            L      +      L +     +  IWK   F                    V +    
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 303 EGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW 335
                 +  S        L+ +G  + ++++  
Sbjct: 184 SQFATSVDISERG-----LIATGFNNGTVQISE 211

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 34/345 (9%), Positives = 83/345 (24%), Gaps = 25/345 (7%)

Query: 4   KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKA 61
                +  L  H G V+ +        I++    ++  VW                    
Sbjct: 39  NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR----- 93

Query: 62  VVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHK 121
            +    +      + +           ++               K   +S  +    H  
Sbjct: 94  -INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152

Query: 122 RLWIEHADSISCLTVYNGLIYSGSWD--KTLKVWRVADLKCLESIKAHDDAVNGLVASKG 179
            + +          +++  I         T    ++   + +    +    V+G+  S  
Sbjct: 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 212

Query: 180 IVYSA--SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF 237
               A  S D  +     +   +            + + L +V    +   V  G  D F
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVAT------LASETLPLLAVTFITESSLVAAG-HDCF 265

Query: 238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG 297
            + +  +    +          + +      +       + DK        A G      
Sbjct: 266 PVLFTYDSAAGKLSFGGRLDVPKQSSQRG--LTARERFQNLDKKASSEGSAAAGAGLD-- 321

Query: 298 AITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST 342
             + H+  V  +              +  +D  + +W V    S 
Sbjct: 322 --SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK 329
              +     +  + I+++    K  +V  +  H G V  +  +P+       + +   D+
Sbjct: 19  RTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPD----SNRIVTCGTDR 73

Query: 330 SLRVWW 335
           +  VW 
Sbjct: 74  NAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 5e-04
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 127 HADSISCLTV--YNGLIYSGSWDKTLKVWRVAD--LKCLESIKAHDDAVNGLVASK--GI 180
             + ISC         I     +  + ++  +      +  +K H+  V G+  +     
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 181 VYSASADGKIKAW 193
           + +   D     W
Sbjct: 66  IVTCGTDRNAYVW 78

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 25/302 (8%), Positives = 71/302 (23%), Gaps = 23/302 (7%)

Query: 44  PDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY 103
            D ++    G  +G    +           +++   V+ +       F +V         
Sbjct: 52  GDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT 111

Query: 104 LGKFMKQSNYVQTRRHHKRLWIEHADSIS---CLTVYNGLIYSGSWDKTLKVWRVADLKC 160
           +     +   ++  R         +D+                G   + + V+ +   K 
Sbjct: 112 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171

Query: 161 LESIKAHDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKGI--LEGHKDVSL 217
             +   +         +    +Y  S      +  + +       +     +      S 
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPG-SP 230

Query: 218 NSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-----GEF 272
           N   +         G  D   M    +   V           E ++L   +        +
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290

Query: 273 LCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLR 332
                    +  +  +          +T  +  +  L+ S +       +     D  + 
Sbjct: 291 YQGAPEKGVLLKYDVKT-------RKVTEVKNNLTDLRLSAD----RKTVMVRKDDGKIY 339

Query: 333 VW 334
            +
Sbjct: 340 TF 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 8e-08
 Identities = 34/320 (10%), Positives = 82/320 (25%), Gaps = 47/320 (14%)

Query: 11  VLSGHVGSVSSLALC--GEFILSASQGKDIIVW----QQPDLRMFTKFGHGDG--SVKAV 62
           +       +S + +      +L  S    + V+    Q  ++ +     +         +
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 63  VTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR 122
                +++       I    +  S        +        + K+        +      
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 123 LWIEHADSIS-------------------CLTVYNGLIYSGSWDKTLKVWRVADLKCLES 163
           +                             +   +  +  G  +  ++ +R+   +    
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 164 IKAHDDAVNGLV------ASKGIVYSASADGKIKAW----------GKELGKSHCHSLKG 207
                     +         +     +S DG++               +     CH L  
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245

Query: 208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC 267
                     NS+  S   K++Y  GSDG +  W       R K+    K +E +V+ + 
Sbjct: 246 KDTNLAYPV-NSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFNEDSVVKIA 301

Query: 268 LVGEFLCSGSADKSIGIWKR 287
                LC  ++D +      
Sbjct: 302 CSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 9e-06
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 257 KAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN 314
           +A +  +  + +      L   S D S+ ++K +   K   +     ++ P+ C     N
Sbjct: 8   QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 315 AVGGGFLLYSGSLDKSLRVWW 335
                  +Y G++   +    
Sbjct: 68  ---TDLQIYVGTVQGEILKVD 85

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 10/234 (4%)

Query: 127 HADSISCLTV--YNGLIYSGSWDKTLKVWRVADLKCLESIKA---HDDAVNGLVASK--G 179
             D IS + +     L+   SWD +L V++         +     +   +          
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM 239
           +                +G     +L           +            + G  +    
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDP 129

Query: 240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI 299
              G+  I    L       +  +  +      L  G  +  +  ++             
Sbjct: 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE 189

Query: 300 TGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEKSIISC 353
           +G +  ++ +   P            S+D  + V +   Q    +S ++    C
Sbjct: 190 SGLKYQIRDVALLPK---EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 109 KQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAH- 167
                V      K +    +      +     I S S DKT+K+W VA LK  ++I    
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280

Query: 168 --DDAVNGLVASKGIVYSASADGKIKAWGKE 196
             +D   G++ +K  + S SA+G I     E
Sbjct: 281 RIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 6/94 (6%)

Query: 241 WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAIT 300
                      L     +  +  L     G  + S SADK+I IW          +   T
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280

Query: 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
             E     +  +         L S S +  +   
Sbjct: 281 RIEDQQLGIIWTKQ------ALVSISANGFINFV 308

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 39/325 (12%), Positives = 85/325 (26%), Gaps = 44/325 (13%)

Query: 14  GHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFT 71
            H   V ++ +      + +  +G  + VW        +     D               
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLD--------------C 93

Query: 72  AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSI 131
            ++D+ IR  K+      +    +    +   L     +     T        +  +   
Sbjct: 94  LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153

Query: 132 SCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIK 191
                         WD   +          +     D + +        +++   D  ++
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND-----GTKLWTGGLDNTVR 208

Query: 192 AWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWK 251
           +W    G+                 + S+     G+W+  G     V         V   
Sbjct: 209 SWDLREGRQLQQH-------DFTSQIFSLGYCPTGEWLAVGMESSNVEVL-----HVNKP 256

Query: 252 LACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL 309
              +   HE  VL +     G++  S   D  +  W+      + +    +     V   
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ----SKESSSVLSC 312

Query: 310 QASPNAVGGGFLLYSGSLDKSLRVW 334
             S +       + +GS DK   V+
Sbjct: 313 DISVD----DKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 25  CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKV 83
           CG++ +S  +   +  W+ P      +       +   ++V    + T   D +  V++V
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 1e-06
 Identities = 37/288 (12%), Positives = 89/288 (30%), Gaps = 16/288 (5%)

Query: 53  GHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSN 112
           GH +  + A+    N + +   D RI  W  S   ++   L+ +L  +K    ++   S 
Sbjct: 11  GH-NKGITALTV--NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA--QEYSSISW 65

Query: 113 YVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN 172
               + +        +         +G     + D  L + +      ++S++ +     
Sbjct: 66  DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125

Query: 173 GLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG 232
             ++   +         I+ +     +        +      +S++          V G 
Sbjct: 126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 185

Query: 233 GSDGFVMGWEGNVEIVRWKLACETKAH----EMAVLCVCLVGEFLCSGSADKSIGIWKRE 288
                +   E       ++ +          E       +  + + +GS D +I I+  +
Sbjct: 186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245

Query: 289 AFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWV 336
              K+ +   +  H+  V  L     +      L S   D  ++ W V
Sbjct: 246 RPMKIIKA--LNAHKDGVNNLLWETPS-----TLVSSGADACIKRWNV 286

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 56/339 (16%), Positives = 106/339 (31%), Gaps = 35/339 (10%)

Query: 3   CKSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKA 61
             + + L  LSGH G V +L    G  ++S S  + + VW          F   + +V+ 
Sbjct: 40  SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 99

Query: 62  VVTVGNKVFTAH----QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR 117
           +  V  K         +D+ + VWK+ + S                   +    +  +  
Sbjct: 100 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESS---------VPDHGEEHDYPLVFHTPEEN 150

Query: 118 RHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDA--VNGLV 175
            +   +   H  S+  ++ +  ++ SGS+D TL VW VA +KCL  +  H D        
Sbjct: 151 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 210

Query: 176 ASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD 235
             +    SAS D  I+ W  E G+                           +        
Sbjct: 211 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL------------RLSDKFLVS 258

Query: 236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR 295
               G     +   +          ++ +    V + +    ++    I+   + GKL  
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS-GKLVH 317

Query: 296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
              I      +  +           L+ +   D    + 
Sbjct: 318 A-NILKDADQIWSVNFKGKT-----LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 127 HADS-ISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK-GIVYSA 184
           H  S I+CL   +  + +G+ DK ++V+   + K L  +  HD  V  L  +  GI+ S 
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG 70

Query: 185 SADGKIKAWGKELGKSHCH 203
           S D  ++ W  + G     
Sbjct: 71  STDRTVRVWDIKKGCCTHV 89

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 24/230 (10%), Positives = 52/230 (22%), Gaps = 31/230 (13%)

Query: 140 LIYSGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVAS---KGIVYSASADGKIKAWGK 195
            +   ++   L V  VA     +S            + +   +      +  G I     
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEI-------- 247
           +  K+  H+    + G    S+ S  +S DGK VY   +    +     V+         
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST 129

Query: 248 ----VRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLC--------- 294
                   +       ++ ++     G    +G     + +   +    L          
Sbjct: 130 ADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGY 189

Query: 295 ------RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK 338
                               L              +  L        +  
Sbjct: 190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 18/226 (7%), Positives = 44/226 (19%), Gaps = 15/226 (6%)

Query: 19  VSSLALCGEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTVGNKVFTAHQDSR 77
            +             +   + V+   D                 ++   +          
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164

Query: 78  IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY 137
           I    V   +      +      +           +      H+   +            
Sbjct: 165 IYKMDVK--TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD 222

Query: 138 NGLIYSGSWDKTLKVWRVADLKCLESIKAHDDA--VNGLVASKGIVYSASADGKIKAWGK 195
                +           +   K      A        GL + K          ++  +  
Sbjct: 223 ---PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL 279

Query: 196 ELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW 241
           +  K     +K     H   +   V     G  +Y GG+   +  +
Sbjct: 280 KQRKL----IKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 1e-05
 Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 107 FMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKA 166
                +    +              +   + +    +   D T++VW V   KC++    
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291

Query: 167 HDDAVNGLVAS-----KGIVYSASADGKIKAW 193
               +            G + S S DG +  +
Sbjct: 292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 241 WEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAIT 300
              + E +++    +            L  +   +  AD +I +W       + +    T
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK---WT 290

Query: 301 GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVW 334
             +  +   Q    A G G ++ S SLD +L  +
Sbjct: 291 LDKQQLGNQQVGVVATGNGRII-SLSLDGTLNFY 323

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 40/333 (12%), Positives = 78/333 (23%), Gaps = 43/333 (12%)

Query: 9   LAVLSGHVGSVSSLALC--GEFILSASQGKDIIVW--QQPDLRMFTKFGHGDGSVKAVVT 64
             V  GH  ++++L+    G+ + SA     I  W              H         T
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 65  VGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW 124
               +FT   D  ++V     S  +  + V    +++          +      +     
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 125 IEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSA 184
             H         YN    + S DK                                    
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVG------------------------------ 154

Query: 185 SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN 244
                  +       S     +     H     +    ++    V    S   +     N
Sbjct: 155 ----GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 210

Query: 245 VEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEG 304
              +    +      ++A +        L +GS D S+ +W          +        
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS 270

Query: 305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS 337
            V  +            + S   D +++ W V 
Sbjct: 271 SVNSVIWLN-----ETTIVSAGQDSNIKFWNVP 298

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 11/118 (9%), Positives = 30/118 (25%), Gaps = 5/118 (4%)

Query: 143 SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKS 200
           +      + +      K ++ I     AV+    S     +     D +I        + 
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP 95

Query: 201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVEIVRWKLACETK 257
              +   I    + V  +      + ++   G          +G     +  ++    
Sbjct: 96  TKVAEIKIGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 11/154 (7%), Positives = 33/154 (21%), Gaps = 18/154 (11%)

Query: 41  WQQPDLRMFTKFGHGDGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSSENVFRLVDT 96
           + QPD+          G +           +        + +    +      +  +   
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 97  LPTTKDYLGKFMKQSNYVQTRRHHKRLW----------IEHADSISCLTVY--NGLIYSG 144
                 +               +    +          +    S   + V      ++ G
Sbjct: 240 --DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 145 SWDKTLKVWRVADLKCLESIKAHDDAVNGLVASK 178
                L  +    L+    +    +A   L + +
Sbjct: 298 GALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.6
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.54
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.06
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.0
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.92
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.86
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.86
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.44
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.33
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.28
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.24
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.23
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.2
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.13
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.9
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.64
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.64
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.44
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.3
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.01
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.9
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.74
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.74
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.63
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.99
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.69
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	95.62
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.55
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.89
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.84
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.71
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.53
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.12
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	93.22
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.81
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	90.87
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.76
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	85.98

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-45  Score=296.49  Aligned_cols=282  Identities=22%  Similarity=0.348  Sum_probs=248.0

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      .....++|+||+++|++|+|+  +++|+||+.||+|+|||+++++.+..+.+|...|.+++++  +.++++++.++.+..
T Consensus         6 ~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            345567899999999999996  8899999999999999999999999999999999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL  158 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~  158 (353)
                      |+.....     .                           ...+.+|...+.++.+++  +.+++++.|+.+++||++++
T Consensus        86 ~~~~~~~-----~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  133 (317)
T d1vyhc1          86 WDFQGFE-----C---------------------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG  133 (317)
T ss_dssp             EETTSSC-----E---------------------------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             ccccccc-----c---------------------------ccccccccccceeeeccCCCceEEeeccCcceeEeecccc
Confidence            9987665     1                           112226888999999998  88999999999999999999


Q ss_pred             eeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC----------
Q 018591          159 KCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG----------  226 (353)
Q Consensus       159 ~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------  226 (353)
                      +.+..+..|...+.++++.+  ..+++++.|+.|++|+..+.+     ....+..+...+ ..+.++|++          
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-----~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~  207 (317)
T d1vyhc1         134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-----CKAELREHRHVV-ECISWAPESSYSSISEATG  207 (317)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE-EEEEECCSCGGGGGGGCCS
T ss_pred             eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce-----eeEEEecCCCCc-eEEEEeeccccceeecccc
Confidence            99999999999999999943  489999999999999999887     666677776665 788887653          


Q ss_pred             ----------CeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceE
Q 018591          227 ----------KWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       227 ----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                                .++++++.|+.|++||++++    .....+.+|...+.++.+  ++++|++|+.||.|++||+.+++   
T Consensus       208 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---  280 (317)
T d1vyhc1         208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---  280 (317)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---
T ss_pred             ceeeeeccCCceeEeccCCCEEEEEECCCC----cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc---
Confidence                      46889999999999999988    566677788888887776  48899999999999999999887   


Q ss_pred             EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      .+..+.+|.++|++++|+|+    +++|++|+.||+|+|||
T Consensus       281 ~~~~~~~h~~~V~~~~~s~~----~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         281 CMKTLNAHEHFVTSLDFHKT----APYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCEEEECCSSCEEEEEECSS----SSCEEEEETTSEEEEEC
T ss_pred             EEEEEcCCCCCEEEEEEcCC----CCEEEEEeCCCeEEEeC
Confidence            66778899999999999999    99999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-43  Score=289.21  Aligned_cols=319  Identities=21%  Similarity=0.310  Sum_probs=245.4

Q ss_pred             CCCceeeeeeCccCce-EEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEE
Q 018591            4 KSHRSLAVLSGHVGSV-SSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v-~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~   82 (353)
                      .+.++.++|+||+++| +|++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|++++|++++.|+.+++|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWN   83 (342)
T ss_dssp             SCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             CCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccc
Confidence            3567889999999997 467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEe----------e-cccceeeeeecCCceEEEEEeCCeEEEecCCCcEE
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQ----------T-RRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLK  151 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~  151 (353)
                      ...........   ...................          . .......+..+.............+++++.|+.|+
T Consensus        84 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          84 AETGECIHTLY---GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             TTTTEEEEEEC---CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             cccccceeccc---ccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            87765211110   0000000000000000000          0 11111222223333333333448899999999999


Q ss_pred             EEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591          152 VWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  231 (353)
                      +||....+.+..+.+|...+..+.+++..+++++.||.|++||++..+     ....+..|...+ .+++++  +++|++
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-----~~~~~~~~~~~v-~~~~~~--~~~l~s  232 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-----CIHTLTGHQSLT-SGMELK--DNILVS  232 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC-----EEEEECCCCSCE-EEEEEE--TTEEEE
T ss_pred             EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce-----eeeEecccccce-eEEecC--CCEEEE
Confidence            999999999999999999999888888899999999999999999887     677777887755 666665  569999


Q ss_pred             ecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEecc--ccCCCcCeEEE
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGA--ITGHEGPVKCL  309 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~h~~~v~~~  309 (353)
                      ++.|+.|++||+...... ........|...+.++.++++++++|+.||.|++||+++++....+..  ..+|.+.|+++
T Consensus       233 ~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v  311 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  311 (342)
T ss_dssp             EETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             EcCCCEEEEEeccccccc-ccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEE
Confidence            999999999999886432 223334567788999999999999999999999999999885433322  24688899999


Q ss_pred             EeecCCCCCCeEEEEccCCCe----EEEEEcCC
Q 018591          310 QASPNAVGGGFLLYSGSLDKS----LRVWWVSK  338 (353)
Q Consensus       310 ~~~~~~~~~~~~l~s~~~dg~----i~iw~~~~  338 (353)
                      +|+|+    +.+|++|+.||+    |++||+..
T Consensus       312 ~~s~~----~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         312 RASNT----KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECSS----EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EECCC----CCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999    999999999985    99999874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-44  Score=292.18  Aligned_cols=280  Identities=16%  Similarity=0.259  Sum_probs=232.3

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCcee-----eEEeccCceeeEEEEEe--CCEEEEecCC
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRM-----FTKFGHGDGSVKAVVTV--GNKVFTAHQD   75 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~s~~~d   75 (353)
                      ..+.++++ +|..+|++++|+  |++|++|+ ||.|+|||+.++..     ......|.+.|.+++|+  +++|++++.|
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            44666677 799999999997  88999987 89999999876432     22345788999999997  7899999999


Q ss_pred             CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEE
Q 018591           76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVW  153 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iw  153 (353)
                      |.|++||+.......                              ...+..|...+.++.+++  ..+++++.|+.|++|
T Consensus       119 g~i~iwd~~~~~~~~------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_         119 STLSIWDLAAPTPRI------------------------------KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             SEEEEEECCCC--EE------------------------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccccccccccccccc------------------------------ccccccccccccccccccccccccccccccccccc
Confidence            999999987654211                              112236888999999998  789999999999999


Q ss_pred             EcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe
Q 018591          154 RVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG  231 (353)
Q Consensus       154 d~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  231 (353)
                      |+.++++......|...|.++++++  ..+++++.|+.+++||+++++     ....+ .+... |.+++|+|+++++++
T Consensus       169 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-----~~~~~-~~~~~-i~~l~~~~~~~~l~~  241 (337)
T d1gxra_         169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----QLQQH-DFTSQ-IFSLGYCPTGEWLAV  241 (337)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----EEEEE-ECSSC-EEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccce-----eeccc-ccccc-eEEEEEcccccccce
Confidence            9999999999999999999999933  489999999999999999886     33333 34444 499999999999999


Q ss_pred             ecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEE
Q 018591          232 GGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL  309 (353)
Q Consensus       232 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~  309 (353)
                      ++.|+.+++||++....     .....|...+.++.+  ++++|++|+.||.|++||+.+++.   +..+ .|.+.|+++
T Consensus       242 ~~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~---~~~~-~~~~~v~~~  312 (337)
T d1gxra_         242 GMESSNVEVLHVNKPDK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---IFQS-KESSSVLSC  312 (337)
T ss_dssp             EETTSCEEEEETTSSCE-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---EEEE-ECSSCEEEE
T ss_pred             ecccccccccccccccc-----ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE---EEEc-cCCCCEEEE
Confidence            99999999999988732     234567778888776  488999999999999999998873   3333 478899999


Q ss_pred             EeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          310 QASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       310 ~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      +|+|+    +++|++|+.||+|+|||+
T Consensus       313 ~~s~d----~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         313 DISVD----DKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTT----SCEEEEEETTSCEEEEEE
T ss_pred             EEeCC----CCEEEEEeCCCeEEEEEE
Confidence            99999    999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-44  Score=291.44  Aligned_cols=288  Identities=20%  Similarity=0.342  Sum_probs=242.9

Q ss_pred             CCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEE
Q 018591            5 SHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRV   80 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~   80 (353)
                      ..++.++|+||+++|++|+|+  +++||||+.||+|+|||+.+++.+..+..|...|.+++|+  +.++++++.|+.+++
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            446778999999999999996  8899999999999999999999999999999999999998  789999999999999


Q ss_pred             EEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCce
Q 018591           81 WKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLK  159 (353)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~  159 (353)
                      |+.........                            ....+.+|........... ..+.....|.....++.....
T Consensus       124 ~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (340)
T d1tbga_         124 YNLKTREGNVR----------------------------VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             EESSSSCSCCC----------------------------EEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTE
T ss_pred             ccccccccccc----------------------------cceeccccccccccccccccccccccccccccccccccccc
Confidence            99876542111                            1122235666666666666 788888999999999988887


Q ss_pred             eeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          160 CLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       160 ~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      .......+...+....+  ....+++++.|+.|++||+++++     +...+.+|...+ .+++|+|++++|++++.||.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-----~~~~~~~h~~~i-~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQTFTGHESDI-NAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccceeEeeeccccccceeEEeecCceEEEEECCCCc-----EEEEEeCCCCCe-EEEEECCCCCEEEEEeCCCe
Confidence            77777777888888888  34489999999999999999887     777888888776 99999999999999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA  315 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  315 (353)
                      |++|+++.......  .....+...+.++.+  ++++|++|+.||.|++||+.+++   .+..+.+|.++|++++|+|+ 
T Consensus       250 i~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~H~~~V~~l~~s~d-  323 (340)
T d1tbga_         250 CRLFDLRADQELMT--YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDD-  323 (340)
T ss_dssp             EEEEETTTTEEEEE--ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTT-
T ss_pred             EEEEeecccccccc--cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEeCC-
Confidence            99999987732222  223445555666655  58899999999999999999887   67788999999999999999 


Q ss_pred             CCCCeEEEEccCCCeEEEEE
Q 018591          316 VGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~  335 (353)
                         +++|+||+.||.|++||
T Consensus       324 ---~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         324 ---GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ---SSCEEEEETTSCEEEEC
T ss_pred             ---CCEEEEEccCCEEEEeC
Confidence               99999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-43  Score=290.10  Aligned_cols=287  Identities=23%  Similarity=0.369  Sum_probs=225.2

Q ss_pred             eeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEec------------------cCceeeEEEEEe--CCE
Q 018591           11 VLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFG------------------HGDGSVKAVVTV--GNK   68 (353)
Q Consensus        11 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~------------------~~~~~v~~~~~~--~~~   68 (353)
                      ...+|++.|+||+|+  |++||+|+ |++|+|||+.+++.+..+.                  .|...|.+++|+  +++
T Consensus        57 ~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          57 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            334699999999996  88999987 8999999999998877664                  356679999998  789


Q ss_pred             EEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC
Q 018591           69 VFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW  146 (353)
Q Consensus        69 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~  146 (353)
                      |++|+.||.|++|+...++     .                           ...+.+|...|.++.+++  ..+++++.
T Consensus       136 l~s~~~dg~v~i~~~~~~~-----~---------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~  183 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRK-----I---------------------------VMILQGHEQDIYSLDYFPSGDKLVSGSG  183 (388)
T ss_dssp             EEEEETTSCEEEEETTTTE-----E---------------------------EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceecccccccccccccccc-----c---------------------------cccccccccccccccccccccccccccc
Confidence            9999999999999998765     1                           122237999999999998  78999999


Q ss_pred             CCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccc--cceeeeeccCCceeeEEEE
Q 018591          147 DKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCH--SLKGILEGHKDVSLNSVVV  222 (353)
Q Consensus       147 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~  222 (353)
                      ++.+++||.++.........+...+....+  .+.++++++.||.|++||.+++.....  .......+|...+ .+++|
T Consensus       184 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~  262 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV-YSVVF  262 (388)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE-EEEEE
T ss_pred             ceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE-EEEEE
Confidence            999999999998887777655544443333  334899999999999999998762111  1112233455554 99999


Q ss_pred             cCCCCeEEeecCCCcEEEeeccccccce--------eeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcc
Q 018591          223 SDDGKWVYGGGSDGFVMGWEGNVEIVRW--------KLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       223 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      +|++++|++++.||.|++||+.......        ........|...+.+++++  +++|++|+.||.|++||+++++ 
T Consensus       263 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-  341 (388)
T d1erja_         263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-  341 (388)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-
T ss_pred             CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-
Confidence            9999999999999999999998753221        2233445567777777764  8899999999999999999987 


Q ss_pred             eEEeccccCCCcCeEEEEe------ecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          293 LCRVGAITGHEGPVKCLQA------SPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       293 ~~~~~~~~~h~~~v~~~~~------~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                        ++..+++|.+.|+++++      +|+    +.+|+||+.||+|+||++++
T Consensus       342 --~~~~l~~H~~~V~~~~~~~~~~~spd----~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         342 --PLLMLQGHRNSVISVAVANGSSLGPE----YNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             --EEEEEECCSSCEEEEEECSSCTTCTT----CEEEEEEETTSEEEEEEEEE
T ss_pred             --EEEEEeCCCCCEEEEEEecCcccCCC----CCEEEEEeCCCEEEEEeeee
Confidence              67788999999999975      566    89999999999999999853

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-42  Score=282.10  Aligned_cols=286  Identities=21%  Similarity=0.347  Sum_probs=228.1

Q ss_pred             eeeeeCccCce-EEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccC
Q 018591            9 LAVLSGHVGSV-SSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRS   86 (353)
Q Consensus         9 ~~~l~~h~~~v-~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~   86 (353)
                      ..+|+||.+.| +|++|++++||||+.||+|+|||+.+++++.++.+|.+.|.+++|+ +++|++++.||.|++|+....
T Consensus         5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT
T ss_pred             cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccccc
Confidence            56899998875 7899999999999999999999999999999999999999999998 789999999999999999876


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee-
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES-  163 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~-  163 (353)
                      ..     ......                         ..+........+.+  ..+++++.|+.|++||+++...... 
T Consensus        85 ~~-----~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~  134 (355)
T d1nexb2          85 CC-----THVFEG-------------------------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH  134 (355)
T ss_dssp             EE-----EEEECC-------------------------CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------
T ss_pred             cc-----cccccc-------------------------ccccccccccccccccceeeeecCCCcEEEEEccCCceeccc
Confidence            52     111100                         02223344455555  7899999999999999976543322 


Q ss_pred             ----------------------ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEE
Q 018591          164 ----------------------IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVV  221 (353)
Q Consensus       164 ----------------------~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~  221 (353)
                                            ...|...+......++.++++..|+.+++||+++.+     ......++.... .++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~-~~~~  208 (355)
T d1nexb2         135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-----CLYILSGHTDRI-YSTI  208 (355)
T ss_dssp             ----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCE-EEEE
T ss_pred             cccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccc-----ceeeeecccccc-cccc
Confidence                                  123445566666677899999999999999999886     556666666665 8999


Q ss_pred             EcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          222 VSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       222 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      ++|++.++++++.|+.|++||.+++    .....+.+|...+.++.+++++|++|+.||.|++||+++...     .+..
T Consensus       209 ~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~  279 (355)
T d1nexb2         209 YDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-----KFSY  279 (355)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCE-----EEEE
T ss_pred             ccccceeeecccccceEEeeecccc----ccccccccccccccccccccceeeeeecccccccccccccce-----eccc
Confidence            9999999999999999999999988    566677889999999999999999999999999999987652     2344


Q ss_pred             CCcCeEEEE-eecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          302 HEGPVKCLQ-ASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       302 h~~~v~~~~-~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      |...+.++. ++++    +.+|++| .||.|++||+++++.+..
T Consensus       280 ~~~~~~~~~~~~~~----~~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         280 HHTNLSAITTFYVS----DNILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             ECTTCCCCCEEEEC----SSEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             ccCCceEEEEEcCC----CCEEEEE-eCCEEEEEECCCCCEEEE
Confidence            666666664 4555    6666665 589999999999988754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-42  Score=275.23  Aligned_cols=287  Identities=17%  Similarity=0.154  Sum_probs=222.3

Q ss_pred             CceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEe-ccCceeeEEEEEe-CCEEEEecCCCcEEEE
Q 018591            6 HRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKF-GHGDGSVKAVVTV-GNKVFTAHQDSRIRVW   81 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w   81 (353)
                      |+..++++||.++|++|+|+  +++|+||+.||+|++||+++++.+..+ ..|...|.+++|+ ...+++++.|+.+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            67789999999999999996  889999999999999999999988887 4689999999998 4567788889999999


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCcee
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKC  160 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~  160 (353)
                      +.........                             ......+...+.++++++ ..+++++.++.+++|+...  .
T Consensus        82 ~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~  130 (299)
T d1nr0a2          82 PAGGSGVDSS-----------------------------KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--L  130 (299)
T ss_dssp             CSSSSSSCTT-----------------------------SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--E
T ss_pred             ccCCcccccc-----------------------------cccccccccccccccccccccccccccccccccccccc--c
Confidence            9875431110                             111125777889999998 5566666678999999543  2


Q ss_pred             eeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccccccee-eeeccCCceeeEEEEcCCCCeEEeecCCCc
Q 018591          161 LESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKG-ILEGHKDVSLNSVVVSDDGKWVYGGGSDGF  237 (353)
Q Consensus       161 ~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  237 (353)
                      ....  ....+.++++++  ..+++++.||.|++||+++.+     ... ....|...+ .+++|+|+++++++++.|+.
T Consensus       131 ~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~-----~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~  202 (299)
T d1nr0a2         131 TEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-----VSEVKTIVHPAEI-TSVAFSNNGAFLVATDQSRK  202 (299)
T ss_dssp             EEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----EEEEEEEECSSCE-EEEEECTTSSEEEEEETTSC
T ss_pred             cccc--ccccccccccccccccccccccccccccccccccc-----ccccccccccccc-cccccccccccccccccccc
Confidence            2222  245577888843  489999999999999998775     222 334455554 99999999999999999999


Q ss_pred             EEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCC
Q 018591          238 VMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNA  315 (353)
Q Consensus       238 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  315 (353)
                      |++||+.++.. ......+..|...+.++++  ++++|++|+.||.|++||++++...........+...|.++.|. + 
T Consensus       203 i~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~-  279 (299)
T d1nr0a2         203 VIPYSVANNFE-LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-N-  279 (299)
T ss_dssp             EEEEEGGGTTE-ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-E-
T ss_pred             ccccccccccc-ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-C-
Confidence            99999987632 2233455678888888876  48899999999999999998876443333333445667777654 4 


Q ss_pred             CCCCeEEEEccCCCeEEEEEcC
Q 018591          316 VGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                         +.+|++++.||+|++||+.
T Consensus       280 ---~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         280 ---ETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ---TTEEEEEETTSCEEEEECC
T ss_pred             ---CCEEEEEeCCCEEEEEecc
Confidence               6789999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-41  Score=270.55  Aligned_cols=277  Identities=16%  Similarity=0.141  Sum_probs=225.6

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccce
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENV   90 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~   90 (353)
                      +++.+..++++  |+.|+.++ ++.|.+||+.+++....+.+|...|.+++|+  +++|++|+.||+|++||+.......
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            44566677885  88888875 5689999999999999999999999999997  8899999999999999998765221


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecC--CCcEEEEEcCCceeeeeccc
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSW--DKTLKVWRVADLKCLESIKA  166 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~--dg~v~iwd~~~~~~~~~~~~  166 (353)
                      .                              ..+..|..+|.+++|++  .++++++.  +..+++|++++++....+.+
T Consensus        95 ~------------------------------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~  144 (311)
T d1nr0a1          95 K------------------------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG  144 (311)
T ss_dssp             E------------------------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC
T ss_pred             c------------------------------cccccccCccccccccccccccccccccccccccccccccccccccccc
Confidence            1                              12237899999999999  67887775  45699999999999999999


Q ss_pred             cCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeec
Q 018591          167 HDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEG  243 (353)
Q Consensus       167 ~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  243 (353)
                      |...|++++|+++   .+++|+.|+.|++||+++.+     .......|...+ .++.++|+++++++++.|+.|++||.
T Consensus       145 h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-----~~~~~~~~~~~i-~~v~~~p~~~~l~~~~~d~~v~~~d~  218 (311)
T d1nr0a1         145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHTKFV-HSVRYNPDGSLFASTGGDGTIVLYNG  218 (311)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccceeeecccccccccccccccccc-----cccccccccccc-cccccCcccccccccccccccccccc
Confidence            9999999999433   58889999999999999887     667777777765 99999999999999999999999999


Q ss_pred             cccccceeee---eeccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcceEEeccccCCC---cCeEEEEeecCC
Q 018591          244 NVEIVRWKLA---CETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE---GPVKCLQASPNA  315 (353)
Q Consensus       244 ~~~~~~~~~~---~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~  315 (353)
                      ..+.......   ....+|...|.+++++  +++|++|+.||.|+|||+++++   .+..+..|.   ..+.++.|+   
T Consensus       219 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~---~~~~l~~~~~~~~~~~~~~~~---  292 (311)
T d1nr0a1         219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK---VEKTIPVGTRIEDQQLGIIWT---  292 (311)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSGGGCEEEEEEC---
T ss_pred             ccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc---EEEEEECCCCccceEEEEEec---
Confidence            8864332221   2234577888888775  8999999999999999999887   455555443   344455554   


Q ss_pred             CCCCeEEEEccCCCeEEEEEcC
Q 018591          316 VGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       316 ~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                         ++.|++++.||.|++||.+
T Consensus       293 ---~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 ---KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ---SSCEEEEETTCCEEEEETT
T ss_pred             ---CCEEEEEECCCEEEEEeCC
Confidence               5589999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=270.40  Aligned_cols=280  Identities=25%  Similarity=0.346  Sum_probs=231.4

Q ss_pred             CceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEccc
Q 018591            6 HRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus         6 ~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~   85 (353)
                      -+.++.+.+|...|+|++|++++||||+.||+|+|||+.+++++.++.+|.+.|.+++|++++|++|+.||.|++|++..
T Consensus         5 ~~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred             EEEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc
Confidence            35566778899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCce---eee
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLK---CLE  162 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~  162 (353)
                      +....     ..                           ..+.............++++..++.+.+||..+..   ...
T Consensus        85 ~~~~~-----~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (293)
T d1p22a2          85 GEMLN-----TL---------------------------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR  132 (293)
T ss_dssp             CCEEE-----EE---------------------------CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred             ccccc-----cc---------------------------cccccccccccccccceeecccccceeEeeccccccccccc
Confidence            76211     11                           02222333333334889999999999999987654   344


Q ss_pred             eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      .+..|...+..+.+.+..+++++.|+.+++||.++.+     ....+.++...+ ..+.++  +.++++++.||.|++||
T Consensus       133 ~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~-----~~~~~~~~~~~v-~~~~~~--~~~l~~~~~dg~i~i~d  204 (293)
T d1p22a2         133 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----FVRTLNGHKRGI-ACLQYR--DRLVVSGSSDNTIRLWD  204 (293)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCE-EEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             cccccccccccceecccccccccCCCceeeecCCCCc-----EEEEEccccccc-ccccCC--CCeEEEecCCCEEEEEe
Confidence            5567888999999988999999999999999999887     666777776654 555554  66899999999999999


Q ss_pred             ccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcc------eEEeccccCCCcCeEEEEeecCCC
Q 018591          243 GNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGK------LCRVGAITGHEGPVKCLQASPNAV  316 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~  316 (353)
                      +++.    ........+...+..+.+++.+|++|+.||.|++||+.....      ...+..+.+|.+.|++++|+    
T Consensus       205 ~~~~----~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d----  276 (293)
T d1p22a2         205 IECG----ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD----  276 (293)
T ss_dssp             TTTC----CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC----
T ss_pred             cccc----eeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc----
Confidence            9987    555666778888999999999999999999999999754321      22556678999999999996    


Q ss_pred             CCCeEEEEccCCCeEEEEE
Q 018591          317 GGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       317 ~~~~~l~s~~~dg~i~iw~  335 (353)
                        +.+|+|+|.||+|++||
T Consensus       277 --~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         277 --EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --SSCEEECCSSSEEEEEC
T ss_pred             --CCEEEEEecCCEEEEeC
Confidence              45899999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-39  Score=268.68  Aligned_cols=289  Identities=13%  Similarity=0.129  Sum_probs=221.3

Q ss_pred             ccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCce--eeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCcc
Q 018591           15 HVGSVSSLALC--GEFILSASQGKDIIVWQQPDLR--MFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSE   88 (353)
Q Consensus        15 h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~   88 (353)
                      +.++|+|++|+  +++||+|+.||.|++||..+++  .+..+.+|.++|.+++|+  +++|++++.|++|++||++++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            35799999996  8899999999999999997765  667789999999999998  88999999999999999987641


Q ss_pred             ceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee----ee
Q 018591           89 NVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC----LE  162 (353)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~----~~  162 (353)
                      ..                              ...+.+|...|.++.|+|  +.+++++.|+.|++|+++....    ..
T Consensus        86 ~~------------------------------~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~  135 (371)
T d1k8kc_          86 KP------------------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  135 (371)
T ss_dssp             EE------------------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             cc------------------------------ccccccccccccccccccccccceeecccCcceeeeeecccccccccc
Confidence            11                              111226888999999998  8899999999999999876432    34


Q ss_pred             eccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCCCccc-------------ccceeeeeccCCceeeEEEEcCCCC
Q 018591          163 SIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELGKSHC-------------HSLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      ....|...|.+++|+++  +|++++.|+++++||........             .........|...+ .+++|+|+++
T Consensus       136 ~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~  214 (371)
T d1k8kc_         136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV-HGVCFSANGS  214 (371)
T ss_dssp             ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE-EEEEECSSSS
T ss_pred             cccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcE-EEEEeecccc
Confidence            45678899999999443  89999999999999986543110             11233445566655 9999999999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEE----------
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCR----------  295 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~----------  295 (353)
                      +|++++.|+.|++||+..+    .....+..|..++.++.+  ++++|++|. |+.+++|..........          
T Consensus       215 ~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKK----MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQ  289 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred             cccccccCCcceEEeeecc----cceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccc
Confidence            9999999999999999887    455566777878877765  577776654 77777765443211000          


Q ss_pred             ----------------------------eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          296 ----------------------------VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       296 ----------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                                                  ......|.+.|+++++.|........++|+|.||.|++||+++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         290 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                                        00012488899999999864332357999999999999999653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-40  Score=263.69  Aligned_cols=270  Identities=14%  Similarity=0.192  Sum_probs=217.1

Q ss_pred             CCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEc
Q 018591            5 SHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus         5 ~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~   83 (353)
                      +.+++++|+||.++|++|+|+.  |+||+.||+|++||+.++.     ..|...|.++.+. +..+++++.|+++++|++
T Consensus         2 ~~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           2 HDEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             CcceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            3578999999999999999986  9999999999999987643     5789999999998 778999999999999998


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeee
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      ....                                       ....+.++.+.+ ..++..+.++.+.+|+..+++.+.
T Consensus        75 ~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (287)
T d1pgua2          75 TKHE---------------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK  115 (287)
T ss_dssp             EEEE---------------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccc---------------------------------------cccceeeeeeccCCceEEEeecccceeeeccceeeee
Confidence            6532                                       334566777777 666666777889999999988888


Q ss_pred             eccccCcceEEEEEeCCeEEEEcCCC-cEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEe
Q 018591          163 SIKAHDDAVNGLVASKGIVYSASADG-KIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW  241 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  241 (353)
                      .+.. ...+.++...++.+++++.++ .+++|++...+     ............+++++|+|++.+|++|+.||.|++|
T Consensus       116 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~  189 (287)
T d1pgua2         116 SVRL-NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE-----VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY  189 (287)
T ss_dssp             EEEC-SSCEEEEEECSSEEEEEETTTSCEEEEETTEEE-----EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eccc-cceeeeeeccCcceeeeccccceeeeeeccccc-----eeeeeeeccCCceeEEEeccCccccccccccccccce
Confidence            8754 456667777777777776664 79999987654     3333333333345999999999999999999999999


Q ss_pred             eccccccceeeeeeccccceeEEEEEEc------------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEE
Q 018591          242 EGNVEIVRWKLACETKAHEMAVLCVCLV------------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCL  309 (353)
Q Consensus       242 d~~~~~~~~~~~~~~~~~~~~v~~~~~~------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~  309 (353)
                      |+..+.   ........|...+.+++++            +.++++|+.|+.|++||++++..  .+..+.+|.+.|+++
T Consensus       190 d~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~~~~~h~~~V~~v  264 (287)
T d1pgua2         190 DLQSRE---VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIKALNAHKDGVNNL  264 (287)
T ss_dssp             ETTTTE---EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEEETTSSTTCEEEE
T ss_pred             eecccc---cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEEEeCCCCCCeEEE
Confidence            998873   2233456788888888763            56899999999999999987543  455678999999999


Q ss_pred             EeecCCCCCCeEEEEccCCCeEEEEEc
Q 018591          310 QASPNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       310 ~~~~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      +|+|+    + .|++++.||.|++|++
T Consensus       265 ~~~~~----~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         265 LWETP----S-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEET----T-EEEEEETTSCEEEEEE
T ss_pred             EECCC----C-EEEEEECCCeEEEEEE
Confidence            99997    6 5889999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.2e-38  Score=255.85  Aligned_cols=249  Identities=16%  Similarity=0.134  Sum_probs=204.2

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee--EEeccCceeeEEEEEe--CCEEEEecC--
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF--TKFGHGDGSVKAVVTV--GNKVFTAHQ--   74 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~--~~~l~s~~~--   74 (353)
                      ..+++..+.+.+|++.|++++|+  |++||+|+.||+|++||+.+++..  ..+..|...|.+++|+  ++++++++.  
T Consensus        45 ~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccc
Confidence            45677888999999999999996  899999999999999999887643  5578899999999998  678888875  


Q ss_pred             CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEE
Q 018591           75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLK  151 (353)
Q Consensus        75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~  151 (353)
                      +..+++|++++++.     .                           ..+.+|...|.+++|+|  + .+++|+.|+.|+
T Consensus       125 ~~~~~v~~~~~~~~-----~---------------------------~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1         125 ERFGHVFLFDTGTS-----N---------------------------GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             SCSEEEEETTTCCB-----C---------------------------BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             cccccccccccccc-----c---------------------------ccccccccccccccccccceeeecccccccccc
Confidence            45699999987651     1                           12237999999999998  3 588899999999


Q ss_pred             EEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCcccc--cceeeeeccCCceeeEEEEcCCCC
Q 018591          152 VWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCH--SLKGILEGHKDVSLNSVVVSDDGK  227 (353)
Q Consensus       152 iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~  227 (353)
                      +||+++++....+..|..+|+++.+++  +.+++++.|+.|++||..++.....  .......+|...+ .+++|+|+++
T Consensus       173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V-~~~~~s~~~~  251 (311)
T d1nr0a1         173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV-FGLTWSPDGT  251 (311)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE-EEEEECTTSS
T ss_pred             cccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc-cccccCCCCC
Confidence            999999999999999999999999943  3899999999999999988762110  1112233456655 9999999999


Q ss_pred             eEEeecCCCcEEEeeccccccceeeeeeccc---cceeEEEEEEcCcEEEEecCCCeEEEEecC
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWKLACETKA---HEMAVLCVCLVGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~  288 (353)
                      +|++|+.||.|++||+++++    +...+..   ....+.++.|+++.|++++.||.|++||.+
T Consensus       252 ~l~tgs~Dg~v~iwd~~t~~----~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         252 KIASASADKTIKIWNVATLK----VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEETTSEEEEEETTTTE----EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCc----EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999883    3333332   234677889999999999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-36  Score=247.75  Aligned_cols=305  Identities=23%  Similarity=0.342  Sum_probs=226.7

Q ss_pred             CCCCceeeeeeCccCceEEEEEC-CcEEEEEeCCCcEEEEeCCCceeeEEeccCce--eeEEEEEe--CCEEEEecCCCc
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC-GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG--SVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      ..+++++++|.+|.++|++++|+ +++|++|+.||+|++|+....+.......+..  ......+.  +..+++++.|+.
T Consensus        40 ~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  119 (355)
T d1nexb2          40 SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  119 (355)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSE
T ss_pred             CCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCc
Confidence            46789999999999999999996 78999999999999999999888776654433  33334444  567999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCC
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~  157 (353)
                      |++||+.+.....     ...............    ............|...+......++.++++..|+.|++||+++
T Consensus       120 i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~  190 (355)
T d1nexb2         120 LHVWKLPKESSVP-----DHGEEHDYPLVFHTP----EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ  190 (355)
T ss_dssp             EEEEECCC----------------CCCEEESCT----TTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             EEEEEccCCceec-----cccccceeccceecc----ccccceeeeeeeccccccccccccceeeeecccceeeeeeccc
Confidence            9999998764211     100000000000000    0001112233467778888888889999999999999999999


Q ss_pred             ceeeeeccccCcceEEEEEe--CCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591          158 LKCLESIKAHDDAVNGLVAS--KGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ++.+....++...+.++.++  ...+++++.|+.|++||.+++.     ....+.+|...+ .++++++  ++|++++.|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~h~~~v-~~~~~~~--~~l~~~~~d  262 (355)
T d1nexb2         191 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-----LMYTLQGHTALV-GLLRLSD--KFLVSAAAD  262 (355)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCC-CEEEECS--SEEEEECTT
T ss_pred             ccceeeeeccccccccccccccceeeecccccceEEeeeccccc-----cccccccccccc-ccccccc--ceeeeeecc
Confidence            99999998889999999994  3489999999999999999987     777888888766 8888874  689999999


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec-cccCCCcCeEEEEeecC
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG-AITGHEGPVKCLQASPN  314 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~  314 (353)
                      |.|++||+++......   ........+.++.+++.++++| .||.|++||+++++   .+. .+.+|.++|++++|+|+
T Consensus       263 g~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~---~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         263 GSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGK---LVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             SEEEEEETTTCCEEEE---EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC---BCCSCTTTTCSEEEEEEEETT
T ss_pred             cccccccccccceecc---cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCC---EEEEEecCCCCCEEEEEEcCC
Confidence            9999999987632211   1122223345556677777666 48999999999987   443 46789999999999986


Q ss_pred             CCCCCeEEEEccCCCeEEEEEc
Q 018591          315 AVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       315 ~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                           .++++++.||+++||.+
T Consensus       336 -----~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         336 -----TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             -----EEEEEEESSSCEEEEEE
T ss_pred             -----eEEEEEECCCcEEEEEE
Confidence                 57888999998766643

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=246.50  Aligned_cols=254  Identities=20%  Similarity=0.312  Sum_probs=207.0

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      +.+..+ .|...|.+++|+  +++|++|+ ||.|++||+..........                           ....
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~---------------------------~~~~   93 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS---------------------------QLDC   93 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE---------------------------EEEC
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeE---------------------------Eeee
Confidence            344455 688999999998  78999987 7999999998765221111                           1111


Q ss_pred             eecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC--ceeeeeccccCcceEEEEEeCC--eEEEEcCCCcEEEEeCCCC
Q 018591          125 IEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD--LKCLESIKAHDDAVNGLVASKG--IVYSASADGKIKAWGKELG  198 (353)
Q Consensus       125 ~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd~~~~  198 (353)
                      .+|...|.+++|+|  ++|++|+.||.|++||+..  .+....+..|...+.+++++++  .+++++.|+.+++||+.++
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~  173 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ  173 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            27899999999999  8899999999999999874  4556777889999999999443  8899999999999999988


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEe
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSG  276 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~  276 (353)
                      +     +......|...+ .+++|++++..+++++.|+.+++||+++++    .... ..+...+.++.+  ++++|++|
T Consensus       174 ~-----~~~~~~~~~~~v-~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~----~~~~-~~~~~~i~~l~~~~~~~~l~~~  242 (337)
T d1gxra_         174 T-----LVRQFQGHTDGA-SCIDISNDGTKLWTGGLDNTVRSWDLREGR----QLQQ-HDFTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             E-----EEEEECCCSSCE-EEEEECTTSSEEEEEETTSEEEEEETTTTE----EEEE-EECSSCEEEEEECTTSSEEEEE
T ss_pred             c-----cccccccccccc-ccccccccccccccccccccccccccccce----eecc-cccccceEEEEEccccccccee
Confidence            7     666677777765 999999999999999999999999998873    2222 235667777766  48899999


Q ss_pred             cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccccCC
Q 018591          277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSEEK  348 (353)
Q Consensus       277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~  348 (353)
                      +.|+.+++||+++++.    .....|...|++++|+|+    +++|++++.||.|++||+.+++.+......
T Consensus       243 ~~d~~i~i~d~~~~~~----~~~~~~~~~i~~v~~s~~----g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  306 (337)
T d1gxra_         243 MESSNVEVLHVNKPDK----YQLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNAWRTPYGASIFQSKES  306 (337)
T ss_dssp             ETTSCEEEEETTSSCE----EEECCCSSCEEEEEECTT----SSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             cccccccccccccccc----ccccccccccceEEECCC----CCEEEEEeCCCeEEEEECCCCCEEEEccCC
Confidence            9999999999998763    235679999999999999    999999999999999999999887765543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-36  Score=239.69  Aligned_cols=257  Identities=25%  Similarity=0.392  Sum_probs=220.1

Q ss_pred             EEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeec
Q 018591           40 VWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTR  117 (353)
Q Consensus        40 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (353)
                      .|.. .......+.+|.+.|++++|+  +++|++|+.||+|++||+++++.                             
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------------   51 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------------   51 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------------
T ss_pred             ccCC-CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-----------------------------
Confidence            4543 344556789999999999998  78999999999999999987751                             


Q ss_pred             ccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCCeEEEEcCCCcEEEE
Q 018591          118 RHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKGIVYSASADGKIKAW  193 (353)
Q Consensus       118 ~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~l~~~~~dg~i~iw  193 (353)
                         ...+.+|...|.++++++  ..++++..++.+..|+....+....+..|...+.++.+  .++.+++++.|+.+++|
T Consensus        52 ---~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  128 (317)
T d1vyhc1          52 ---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW  128 (317)
T ss_dssp             ---CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ---EEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEe
Confidence               222337999999999999  88999999999999999999888889999999999999  34489999999999999


Q ss_pred             eCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc----
Q 018591          194 GKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV----  269 (353)
Q Consensus       194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----  269 (353)
                      |+++++     ....+..|.... .+++|+|++.+|++++.|+.|++|+....    .....+..+...+.++.+.    
T Consensus       129 ~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~v~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~  198 (317)
T d1vyhc1         129 EVQTGY-----CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESS  198 (317)
T ss_dssp             ETTTCC-----EEEEEECCSSCE-EEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCG
T ss_pred             ecccce-----eeeEEccCCCcc-eeeecccCCCEEEEEeCCCeEEEEeeccc----eeeEEEecCCCCceEEEEeeccc
Confidence            999887     677788887776 99999999999999999999999999887    4444555666666655542    


Q ss_pred             ------------------CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeE
Q 018591          270 ------------------GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSL  331 (353)
Q Consensus       270 ------------------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i  331 (353)
                                        +.++++++.|+.|++||+.+++   .+..+.+|...|++++|+|+    +++|++|+.||.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~i  271 (317)
T d1vyhc1         199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---CLMTLVGHDNWVRGVLFHSG----GKFILSCADDKTL  271 (317)
T ss_dssp             GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECSS----SSCEEEEETTTEE
T ss_pred             cceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc---EEEEEeCCCCCEEEEEECCC----CCEEEEEECCCeE
Confidence                              4579999999999999999877   67778899999999999999    9999999999999


Q ss_pred             EEEEcCCCCCccccc
Q 018591          332 RVWWVSKQSSTSDSE  346 (353)
Q Consensus       332 ~iw~~~~~~~~~~~~  346 (353)
                      ++||+.+++.+....
T Consensus       272 ~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         272 RVWDYKNKRCMKTLN  286 (317)
T ss_dssp             EEECCTTSCCCEEEE
T ss_pred             EEEECCCCcEEEEEc
Confidence            999999998887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=246.78  Aligned_cols=281  Identities=15%  Similarity=0.150  Sum_probs=194.5

Q ss_pred             eeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCce------eeEEeccCceeeEEEEE------e---CCEEEEe
Q 018591            8 SLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLR------MFTKFGHGDGSVKAVVT------V---GNKVFTA   72 (353)
Q Consensus         8 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~------~~~~~~~~~~~v~~~~~------~---~~~l~s~   72 (353)
                      .....++|.+.|+++++++++++|||.|++|++||..+.+      .......|...+..+..      +   ...++++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            3466789999999999999999999999999999976543      12222333333322221      1   3467899


Q ss_pred             cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-------CeEEEec
Q 018591           73 HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-------GLIYSGS  145 (353)
Q Consensus        73 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~l~~~~  145 (353)
                      +.||.|++|++.................                      ....+...+..+++.+       .++++++
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLL----------------------DSDMKKHSFWALKWGASNDRLLSHRLVATD  143 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCS----------------------CTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred             eCCCcEEEEEccCCCceeeeecccccee----------------------eeccCCCceEEEEEecCCCcccccEEEEEc
Confidence            9999999999876543221111111000                      0013445566666654       5788999


Q ss_pred             CCCcEEEEEcCCce------------------eeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcc-cccc
Q 018591          146 WDKTLKVWRVADLK------------------CLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSH-CHSL  205 (353)
Q Consensus       146 ~dg~v~iwd~~~~~------------------~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~  205 (353)
                      .||.+++|++....                  .......+...++++++ +++++++|+.||+|++||+.+++.. ....
T Consensus       144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~  223 (393)
T d1sq9a_         144 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES  223 (393)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccccccc
Confidence            99999999984321                  11122345567889999 4559999999999999999987621 1122


Q ss_pred             eeeeeccCCceeeEEEEcCCCCeEEeecCCCc---EEEeeccccccceee---------eeeccccceeEEEEEE--cCc
Q 018591          206 KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGF---VMGWEGNVEIVRWKL---------ACETKAHEMAVLCVCL--VGE  271 (353)
Q Consensus       206 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~---------~~~~~~~~~~v~~~~~--~~~  271 (353)
                      ...+.+|...+ .+++|+|++++|++|+.|+.   |++||++++.....+         ...+.+|...|.++++  +++
T Consensus       224 ~~~l~~h~~~V-~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~  302 (393)
T d1sq9a_         224 QHSMINNSNSI-RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE  302 (393)
T ss_dssp             CC---CCCCCE-EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred             ccccccccceE-EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC
Confidence            23455677665 99999999999999998874   899999886433222         2234578889988887  488


Q ss_pred             EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeE----EEEeecC
Q 018591          272 FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVK----CLQASPN  314 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~----~~~~~~~  314 (353)
                      +|++|+.|++|++||+++++   ++..+.+|.+.|.    .++|+|+
T Consensus       303 ~l~S~s~D~~v~vWd~~~g~---~~~~l~gH~~~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVKTKE---RITTLNMHCDDIEIEEDILAVDEH  346 (393)
T ss_dssp             EEEEEETTSEEEEEETTTTE---EEEEEECCGGGCSSGGGCCCBCTT
T ss_pred             eeEEECCCCEEEEEECCCCC---EEEEECCcCCcccCCccEEEECCC
Confidence            99999999999999999987   7777888877664    3555555

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-35  Score=236.12  Aligned_cols=282  Identities=15%  Similarity=0.098  Sum_probs=206.2

Q ss_pred             ceEEEEEC--CcEEEEEeCCC-cEEEEeCCCc--eeeEEeccC-ceeeEEEEEe----CCEEEEecCCCcEEEEEcccCc
Q 018591           18 SVSSLALC--GEFILSASQGK-DIIVWQQPDL--RMFTKFGHG-DGSVKAVVTV----GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg-~v~vwd~~~~--~~~~~~~~~-~~~v~~~~~~----~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      .+++++|+  ++.|+.++.+. .|+.|+....  ..+..+.+| ...|++++|+    +.+|++|+.||+|++||+..+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            56788896  78888876554 4667775443  445666666 5789999996    5689999999999999997654


Q ss_pred             cceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec--CCCcEEEEEcCCceeeee
Q 018591           88 ENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS--WDKTLKVWRVADLKCLES  163 (353)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~--~dg~v~iwd~~~~~~~~~  163 (353)
                      .......                        .....+..|.++|.+++|++  .++++++  .++.+++|+.++++++..
T Consensus        99 ~~~~~~~------------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  154 (325)
T d1pgua1          99 ESNSVEV------------------------NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE  154 (325)
T ss_dssp             GGTEEEE------------------------EEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred             ceeeeec------------------------ccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee
Confidence            2111110                        01123346889999999998  5666554  477899999999999999


Q ss_pred             ccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC-CCeEEeecCCCcEE
Q 018591          164 IKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD-GKWVYGGGSDGFVM  239 (353)
Q Consensus       164 ~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  239 (353)
                      +.+|...|.+++|.+.   .+++++.|+.+++||....+..  ........+...+ .+++|+|+ +.++++++.|+.|+
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~--~~~~~~~~~~~~v-~~v~~~pd~~~~l~s~~~d~~i~  231 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS--ASDRTHHKQGSFV-RDVEFSPDSGEFVITVGSDRKIS  231 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE--EEECSSSCTTCCE-EEEEECSTTCCEEEEEETTCCEE
T ss_pred             eeecccccccccccccccceEEEeecccccccccccccccc--eecccccCCCCcc-EEeeeccccceecccccccccee
Confidence            9999999999999433   5788999999999998876511  1112233444544 99999996 68899999999999


Q ss_pred             Eeeccccccceeeeeecccccee----EEEEEE-cCcEEEEecCCCeEEEEecCCCcceEEeccccCCC--cCeEEEEee
Q 018591          240 GWEGNVEIVRWKLACETKAHEMA----VLCVCL-VGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHE--GPVKCLQAS  312 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~----v~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~  312 (353)
                      +||++++    +....+.+|...    +.++.+ ++++|++++.|+.|+|||+++++   .+..+..|.  ..+..+++.
T Consensus       232 iwd~~~~----~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~  304 (325)
T d1pgua1         232 CFDGKSG----EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK---CVQKWTLDKQQLGNQQVGVV  304 (325)
T ss_dssp             EEETTTC----CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE---EEEEEECCTTCGGGCEEEEE
T ss_pred             eeeeccc----cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC---EEEEEEecCCcccCeEEEEE
Confidence            9999887    444455555544    455554 58899999999999999999877   444444443  334455554


Q ss_pred             cCCCCCCeEEEEccCCCeEEEEEc
Q 018591          313 PNAVGGGFLLYSGSLDKSLRVWWV  336 (353)
Q Consensus       313 ~~~~~~~~~l~s~~~dg~i~iw~~  336 (353)
                      +..   +.+|++++.||.|++||+
T Consensus       305 ~~~---~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         305 ATG---NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEE---TTEEEEEETTSCEEEEET
T ss_pred             ECC---CCEEEEEECCCEEEEEEC
Confidence            431   347899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-35  Score=237.60  Aligned_cols=255  Identities=23%  Similarity=0.390  Sum_probs=201.3

Q ss_pred             EeCCCceeeEEeccCceee-EEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccc
Q 018591           41 WQQPDLRMFTKFGHGDGSV-KAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRH  119 (353)
Q Consensus        41 wd~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (353)
                      |+..+.++.+.+++|.+.| .++.+++++|+||+.||+|++||+.+++     ++..                       
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~-----~~~~-----------------------   52 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK-----CLRT-----------------------   52 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----EEEE-----------------------
T ss_pred             CCCCCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCC-----EEEE-----------------------
Confidence            6666778888999999887 4678889999999999999999998876     3322                       


Q ss_pred             ceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-----------------------
Q 018591          120 HKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-----------------------  176 (353)
Q Consensus       120 ~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-----------------------  176 (353)
                          +.+|...|.+++|++++|++|+.|+.+++|+............+...+.....                       
T Consensus        53 ----~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  128 (342)
T d2ovrb2          53 ----LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ  128 (342)
T ss_dssp             ----CCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC
T ss_pred             ----EeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccc
Confidence                23799999999999999999999999999998765544333222222222211                       


Q ss_pred             -----------------eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEE
Q 018591          177 -----------------SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVM  239 (353)
Q Consensus       177 -----------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  239 (353)
                                       ....+++++.|+.+++||.+...     ....+.+|..   ....+++++.++++++.||.|+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~---~~~~~~~~~~~l~s~~~dg~i~  200 (342)
T d2ovrb2         129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----CLHTLQGHTN---RVYSLQFDGIHVVSGSLDTSIR  200 (342)
T ss_dssp             EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----EEEEECCCSS---CEEEEEECSSEEEEEETTSCEE
T ss_pred             ceeeeecccccceeeccccceeeeecCCCeEEEeecccce-----eeEEEcCccc---ccccccCCCCEEEEEeCCCeEE
Confidence                             33366777777777888777665     5556666655   4455667788999999999999


Q ss_pred             EeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCC
Q 018591          240 GWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGG  319 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  319 (353)
                      +||++..    ........|...+.++++++++|++|+.||.|++||+...+....+.....|...+.++.++++     
T Consensus       201 ~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  271 (342)
T d2ovrb2         201 VWDVETG----NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-----  271 (342)
T ss_dssp             EEETTTC----CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-----
T ss_pred             Eeecccc----eeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC-----
Confidence            9999987    5666778889999999999999999999999999999988866666666678888888888754     


Q ss_pred             eEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          320 FLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       320 ~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                       ++++|+.||+|++||+++++.+.+.
T Consensus       272 -~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         272 -FVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             -eeEEEcCCCEEEEEECCCCCEEEEE
Confidence             9999999999999999999877654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.8e-35  Score=241.11  Aligned_cols=293  Identities=19%  Similarity=0.258  Sum_probs=214.5

Q ss_pred             EEEEeCCCcEEEEeCCCceee----EEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccc
Q 018591           29 ILSASQGKDIIVWQQPDLRMF----TKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKD  102 (353)
Q Consensus        29 l~s~~~dg~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~  102 (353)
                      .+.+..++...+|+....+..    .....|.+.|++++|+  |++|++|+ |+.|++||+.+++     .+..+.....
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~-----~~~~~~~~~~  104 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS-----LVARLSDDSA  104 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC-----EEEEECC---
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccc-----eEeeeccccc
Confidence            456778899999997654322    2223589999999998  78898886 8999999998876     2222211100


Q ss_pred             eeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--C
Q 018591          103 YLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--K  178 (353)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~  178 (353)
                      ...         ............|...|++++|+|  ++|++|+.||.|++||...++.+..+.+|...|.++.+.  .
T Consensus       105 ~~~---------~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~  175 (388)
T d1erja_         105 ANK---------DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG  175 (388)
T ss_dssp             -----------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ccc---------cccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccc
Confidence            000         000001112236888999999999  799999999999999999999999999999999999993  3


Q ss_pred             CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee---ee
Q 018591          179 GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA---CE  255 (353)
Q Consensus       179 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~  255 (353)
                      ..+++++.++.+++||.++..     .......+.. .+....+.+++++|++++.||.|++|+..++.......   ..
T Consensus       176 ~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~  249 (388)
T d1erja_         176 DKLVSGSGDRTVRIWDLRTGQ-----CSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES  249 (388)
T ss_dssp             SEEEEEETTSEEEEEETTTTE-----EEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----
T ss_pred             ccccccccceeeeeeeccccc-----cccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccc
Confidence            489999999999999998876     4444444433 32444444588999999999999999998874333222   22


Q ss_pred             ccccceeEEEEEEc--CcEEEEecCCCeEEEEecCCCcce---------EEeccccCCCcCeEEEEeecCCCCCCeEEEE
Q 018591          256 TKAHEMAVLCVCLV--GEFLCSGSADKSIGIWKREAFGKL---------CRVGAITGHEGPVKCLQASPNAVGGGFLLYS  324 (353)
Q Consensus       256 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s  324 (353)
                      ..+|...+.++.++  +++|++|+.||.|++||+.+.+..         ........|...|++++|+|+    +++|++
T Consensus       250 ~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s  325 (388)
T d1erja_         250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN----DEYILS  325 (388)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG----GCEEEE
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC----CCEEEE
Confidence            34577788888775  889999999999999999865432         123345678899999999999    999999


Q ss_pred             ccCCCeEEEEEcCCCCCccccc
Q 018591          325 GSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       325 ~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      |+.||.|++||+.+++++.+.+
T Consensus       326 g~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         326 GSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE
T ss_pred             EeCCCEEEEEECCCCcEEEEEe
Confidence            9999999999999998877654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.1e-35  Score=234.48  Aligned_cols=250  Identities=22%  Similarity=0.287  Sum_probs=198.8

Q ss_pred             ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      |+..+.+.+|...|++++|+  +++|++|+.||+|++||++++.     ....+..                        
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-----~~~~~~~------------------------   52 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-----SNRVFPD------------------------   52 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEECSSC------------------------
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEcC------------------------
Confidence            56788999999999999998  7899999999999999998876     3333322                        


Q ss_pred             eeecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceee---eeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCC
Q 018591          124 WIEHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCL---ESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~  198 (353)
                        +|...|++++|+| +.+++++.|+.+++|+.......   .....+...+.++++ +++.+++++.++.+++|+....
T Consensus        53 --~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~  130 (299)
T d1nr0a2          53 --VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  130 (299)
T ss_dssp             --SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             --CCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence              6899999999999 67888889999999998653321   122346778889999 4556666667789999985432


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEEEe
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLCSG  276 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  276 (353)
                             ......+  . +.+++|+|+++++++++.||.|++||+++...   .......|...+.++.++  +++|+++
T Consensus       131 -------~~~~~~~--~-~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~  197 (299)
T d1nr0a2         131 -------TEVPISY--N-SSCVALSNDKQFVAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVAT  197 (299)
T ss_dssp             -------EEEECSS--C-EEEEEECTTSCEEEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             -------ccccccc--c-cccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence                   2222222  2 38899999999999999999999999987632   122334567778887774  8899999


Q ss_pred             cCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          277 SADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       277 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      +.|+.|++||+.++........+.+|..+|++++|+|+    +++|++|+.||.|++||++++....
T Consensus       198 ~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~sgs~dg~i~iwd~~~~~~~~  260 (299)
T d1nr0a2         198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD----NVRLATGSLDNSVIVWNMNKPSDHP  260 (299)
T ss_dssp             ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTCTTSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccc----ccceEEEcCCCEEEEEECCCCCcce
Confidence            99999999999987765566677889999999999999    9999999999999999998876543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-34  Score=237.87  Aligned_cols=244  Identities=13%  Similarity=0.047  Sum_probs=193.1

Q ss_pred             ceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEE
Q 018591           56 DGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISC  133 (353)
Q Consensus        56 ~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  133 (353)
                      ..+|++++|+  +++|++++.||.|++||+++++..   .                           ...+.+|.++|++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~---~---------------------------~~~l~gH~~~V~~   56 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---Q---------------------------VHELKEHNGQVTG   56 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---E---------------------------EEEEECCSSCEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE---E---------------------------EEEecCCCCCEEE
Confidence            4689999998  789999999999999999776411   1                           2233489999999


Q ss_pred             EEEeC--CeEEEecCCCcEEEEEcCCcee--eeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          134 LTVYN--GLIYSGSWDKTLKVWRVADLKC--LESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       134 ~~~~~--~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      ++|+|  ++|++|+.|+.|++||+.++..  ...+..|...|.+++|++  ..+++++.|+.+++|++..... ......
T Consensus        57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-~~~~~~  135 (371)
T d1k8kc_          57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-WWVCKH  135 (371)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-EEEEEE
T ss_pred             EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccc-cccccc
Confidence            99998  8999999999999999987653  455677889999999943  3899999999999999877652 111233


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc--------------eeeeeeccccceeEEEEEE--cCc
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR--------------WKLACETKAHEMAVLCVCL--VGE  271 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~~~~v~~~~~--~~~  271 (353)
                      ....|...+ .+++|+|++++|++|+.|+.+++|+.......              .........|...+.++++  +++
T Consensus       136 ~~~~~~~~v-~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  214 (371)
T d1k8kc_         136 IKKPIRSTV-LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  214 (371)
T ss_dssp             ECTTCCSCE-EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             ccccccccc-ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccc
Confidence            344555555 99999999999999999999999998654211              1233445667777777766  588


Q ss_pred             EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          272 FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      +|++++.|+.|++||+.+++   .+..+..|..+|.+++|+|+    +++|++|+ |+.+++|.....
T Consensus       215 ~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~s~~fs~d----~~~la~g~-d~~~~~~~~~~~  274 (371)
T d1k8kc_         215 RVAWVSHDSTVCLADADKKM---AVATLASETLPLLAVTFITE----SSLVAAGH-DCFPVLFTYDSA  274 (371)
T ss_dssp             EEEEEETTTEEEEEEGGGTT---EEEEEECSSCCEEEEEEEET----TEEEEEET-TSSCEEEEEETT
T ss_pred             cccccccCCcceEEeeeccc---ceeeeecccccceeeeecCC----CCEEEEEc-CCceEEEEeeCC
Confidence            99999999999999999877   66778889999999999999    88888765 777777765543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=224.02  Aligned_cols=247  Identities=23%  Similarity=0.370  Sum_probs=210.3

Q ss_pred             CCCCceeeeeeCccCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWK   82 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~   82 (353)
                      ..+++++++|++|.++|++++|++++|++|+.||.|++|++..+........+.............++++..++.+++|+
T Consensus        42 ~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (293)
T d1p22a2          42 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD  121 (293)
T ss_dssp             SSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEee
Confidence            46789999999999999999999999999999999999999999888888776666666656688999999999999999


Q ss_pred             cccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee
Q 018591           83 VSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  162 (353)
                      ..........                             ..+..|...+.++.+.+..+++++.|+.|++||+++++++.
T Consensus       122 ~~~~~~~~~~-----------------------------~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~  172 (293)
T d1p22a2         122 MASPTDITLR-----------------------------RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR  172 (293)
T ss_dssp             CSSSSCCEEE-----------------------------EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccccccccc-----------------------------ccccccccccccceecccccccccCCCceeeecCCCCcEEE
Confidence            8876532211                             12226888999999999999999999999999999999999


Q ss_pred             eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      .+.++...+..+.+++..+++++.||.|++||+++..     .......+...+   ..+++++.+|++++.||.|++||
T Consensus       173 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~v---~~~~~~~~~l~sg~~dg~i~iwd  244 (293)
T d1p22a2         173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA-----CLRVLEGHEELV---RCIRFDNKRIVSGAYDGKIKVWD  244 (293)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCE---EEEECCSSEEEEEETTSCEEEEE
T ss_pred             EEcccccccccccCCCCeEEEecCCCEEEEEecccce-----eeeeecccceee---eeccccceEEEEEcCCCEEEEEE
Confidence            9999999999999999999999999999999999887     566666666543   35667888999999999999999


Q ss_pred             ccccccc-----eeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEe
Q 018591          243 GNVEIVR-----WKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWK  286 (353)
Q Consensus       243 ~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~  286 (353)
                      +......     ......+.+|...|.++++++.+|++|+.||+|++||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             HHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             CCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            8764321     2345567789999999999999999999999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-33  Score=223.86  Aligned_cols=244  Identities=14%  Similarity=0.156  Sum_probs=186.4

Q ss_pred             CceeeeeeCcc-CceEEEEEC----CcEEEEEeCCCcEEEEeCCCceee--------EEeccCceeeEEEEEe--CCEEE
Q 018591            6 HRSLAVLSGHV-GSVSSLALC----GEFILSASQGKDIIVWQQPDLRMF--------TKFGHGDGSVKAVVTV--GNKVF   70 (353)
Q Consensus         6 ~~~~~~l~~h~-~~v~~~~~~----~~~l~s~~~dg~v~vwd~~~~~~~--------~~~~~~~~~v~~~~~~--~~~l~   70 (353)
                      ...+..+.+|. ..|++++|+    +++|++|+.||+|++||+..++..        ..+..|.++|.+++|+  +.+++
T Consensus        52 ~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  131 (325)
T d1pgua1          52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  131 (325)
T ss_dssp             SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccc
Confidence            45567788884 689999994    679999999999999998654322        3345678899999998  67777


Q ss_pred             Eec--CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEec
Q 018591           71 TAH--QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGS  145 (353)
Q Consensus        71 s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~  145 (353)
                      +++  .++.+++|+.+++.     .+..                           +.+|...|.+++|++   ..+++++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~-----~~~~---------------------------~~~h~~~v~~~~~~~~~~~~~~~~~  179 (325)
T d1pgua1         132 VVGEGRDNFGVFISWDSGN-----SLGE---------------------------VSGHSQRINACHLKQSRPMRSMTVG  179 (325)
T ss_dssp             EEECCSSCSEEEEETTTCC-----EEEE---------------------------CCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred             eeeccccceEEEEeecccc-----ccee---------------------------eeecccccccccccccccceEEEee
Confidence            664  46789999998765     2222                           237999999999998   3578899


Q ss_pred             CCCcEEEEEcCCceeeeec---cccCcceEEEEEeC---CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeE
Q 018591          146 WDKTLKVWRVADLKCLESI---KAHDDAVNGLVASK---GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNS  219 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~---~~~~~~v~~i~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (353)
                      .|+.+++||..+.+....+   ..|...|.+++|++   .++++++.|+.|++||+++++     ....+.+|...+ ..
T Consensus       180 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~-----~~~~l~~~~~~v-~~  253 (325)
T d1pgua1         180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-----FLKYIEDDQEPV-QG  253 (325)
T ss_dssp             TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-----EEEECCBTTBCC-CS
T ss_pred             cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc-----cccccccccccc-cc
Confidence            9999999999887765544   46678899999954   388999999999999999887     667777777654 55


Q ss_pred             EEEc---CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc-CcEEEEecCCCeEEEEec
Q 018591          220 VVVS---DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV-GEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       220 ~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~iw~~  287 (353)
                      +.|+   |++++|++++.|+.|++||+++++.................++.+. +.+|++++.||.|++||+
T Consensus       254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            5554   6889999999999999999998743322222222222334555555 568999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=229.47  Aligned_cols=290  Identities=10%  Similarity=0.063  Sum_probs=201.6

Q ss_pred             ceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceee---EEeccCceeeEEEEEe---CCEEEEecCCCcE
Q 018591            7 RSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMF---TKFGHGDGSVKAVVTV---GNKVFTAHQDSRI   78 (353)
Q Consensus         7 ~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~---~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i   78 (353)
                      |.++.+++|++.|++|+|+  +++||+|+.||+|+|||+.++...   .....|..+|.+++|.   +.+|++|+.||.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            5688899999999999996  889999999999999998765432   2334689999999997   4579999999999


Q ss_pred             EEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe--CCeEEEecCCCcEEEEEcC
Q 018591           79 RVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY--NGLIYSGSWDKTLKVWRVA  156 (353)
Q Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~v~iwd~~  156 (353)
                      ++|++..........     .                          .+........+.  ...+++++.++.+++||++
T Consensus        82 ~~w~~~~~~~~~~~~-----~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          82 LKVDLIGSPSFQALT-----N--------------------------NEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             EEECSSSSSSEEECB-----S--------------------------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             eeeeccccccccccc-----c--------------------------cccccccccccccccccccccccccccceeecc
Confidence            999998765211110     0                          122222222222  2899999999999999986


Q ss_pred             Cceee----eecccc----CcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEE-cCCCC
Q 018591          157 DLKCL----ESIKAH----DDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVV-SDDGK  227 (353)
Q Consensus       157 ~~~~~----~~~~~~----~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~  227 (353)
                      +....    .....+    ......+...++.+++++.|+.|++||++......  ............ .+..+ .+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~  207 (342)
T d1yfqa_         131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQI-RDVALLPKEQE  207 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCE-EEEEECSGGGC
T ss_pred             ccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc--eeeeecccccce-eeeEeecCCCC
Confidence            54322    222222    12223334466799999999999999998776211  111222223333 44444 45678


Q ss_pred             eEEeecCCCcEEEeecccccccee-----------eeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceE
Q 018591          228 WVYGGGSDGFVMGWEGNVEIVRWK-----------LACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLC  294 (353)
Q Consensus       228 ~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~  294 (353)
                      .+++++.||.+.+|+.........           .......|...+.++++  ++++|++|+.||.|++||+++++   
T Consensus       208 ~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~---  284 (342)
T d1yfqa_         208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---  284 (342)
T ss_dssp             EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---
T ss_pred             EEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc---
Confidence            899999999999998765422111           11122345556666666  58899999999999999999877   


Q ss_pred             EeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          295 RVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       295 ~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                      .+..+..+ ..+..++|+|+    +++|++++.|+.+++|....
T Consensus       285 ~l~~~~~~-~~~~~~~~s~~----~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         285 KIKNFAKF-NEDSVVKIACS----DNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             EEEECCCC-SSSEEEEEEEC----SSEEEEEEECTHHHHCSSSC
T ss_pred             EEEEecCC-CCCEEEEEEeC----CCEEEEEEcCCcEEEeeeeC
Confidence            45545432 34556778888    88999999999998887543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-31  Score=217.66  Aligned_cols=254  Identities=16%  Similarity=0.210  Sum_probs=209.5

Q ss_pred             ceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceee
Q 018591           46 LRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRL  123 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (353)
                      .+..+++.+|.+.|++++|+  +++|++|+.||+|++||+.++.     .+                           ..
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-----~~---------------------------~~   92 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KV---------------------------HA   92 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-----EE---------------------------EE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-----eE---------------------------EE
Confidence            45677899999999999998  7899999999999999998775     22                           22


Q ss_pred             eeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCc----eeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCC
Q 018591          124 WIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADL----KCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKE  196 (353)
Q Consensus       124 ~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~  196 (353)
                      +..|...|.+++|+|  .++++|+.|+.+.+|+....    .....+.+|......... .+..+.....+.....++..
T Consensus        93 ~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (340)
T d1tbga_          93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE  172 (340)
T ss_dssp             EECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETT
T ss_pred             EecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccc
Confidence            237899999999999  89999999999999997653    344556677777776666 66688888999999999887


Q ss_pred             CCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc--CcEEE
Q 018591          197 LGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFLC  274 (353)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  274 (353)
                      ...     .......+...+ ....+.+.+.++++++.|+.|++||++++    .....+.+|...+.+++++  +++|+
T Consensus       173 ~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~i~d~~~~----~~~~~~~~h~~~i~~v~~~p~~~~l~  242 (340)
T d1tbga_         173 TGQ-----QTTTFTGHTGDV-MSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFA  242 (340)
T ss_dssp             TTE-----EEEEEECCSSCE-EEEEECTTSSEEEEEETTTEEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccc-----ccccccccceeE-eeeccccccceeEEeecCceEEEEECCCC----cEEEEEeCCCCCeEEEEECCCCCEEE
Confidence            765     344444444444 88999999999999999999999999988    5666777888888888774  88999


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +|+.||.|++||+...+... ......|...|++++|+|+    +++|++|+.||.|++||+.+++.+....
T Consensus       243 s~s~d~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         243 TGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECSS----SCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEeCCCeEEEEeeccccccc-ccccccccCceEEEEECCC----CCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence            99999999999999876432 2234567788999999999    9999999999999999999988877655

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-32  Score=223.12  Aligned_cols=263  Identities=14%  Similarity=0.126  Sum_probs=183.6

Q ss_pred             EEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccce--eEEeeccccccceeeeecccceeEeecccceeeeeec
Q 018591           50 TKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENV--FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH  127 (353)
Q Consensus        50 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (353)
                      ...++|.+.|.++++.++++++++.|++|++||..+.....  .....                            ...|
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~----------------------------~~~~   59 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYS----------------------------HFVH   59 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEE----------------------------EECC
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEe----------------------------eeec
Confidence            44578999999999999999999999999999987654210  00000                            0012


Q ss_pred             CCc------eEEEEEeC---CeEEEecCCCcEEEEEcCCceeeee----------ccccCcceEEEEEe-------CCeE
Q 018591          128 ADS------ISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLES----------IKAHDDAVNGLVAS-------KGIV  181 (353)
Q Consensus       128 ~~~------i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~----------~~~~~~~v~~i~~~-------~~~l  181 (353)
                      ...      ...+...+   ..+++++.||.|++|++........          ...+...+..+++.       ..++
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (393)
T d1sq9a_          60 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL  139 (393)
T ss_dssp             TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred             cCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEE
Confidence            222      22222222   4678999999999999764322111          12244566777762       1378


Q ss_pred             EEEcCCCcEEEEeCCCCCcccc-------------cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc
Q 018591          182 YSASADGKIKAWGKELGKSHCH-------------SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV  248 (353)
Q Consensus       182 ~~~~~dg~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  248 (353)
                      ++++.||.+++|++........             ........+.. .+.+++|+|++ +|++|+.||.|++||+.+++.
T Consensus       140 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~  217 (393)
T d1sq9a_         140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ-FATSVDISERG-LIATGFNNGTVQISELSTLRP  217 (393)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC-CCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCC-cEEEEEECCCC-EEEEEeCCCcEEEEeeccccc
Confidence            9999999999999854321100             00111112222 34899999997 899999999999999998754


Q ss_pred             ce--eeeeeccccceeEEEEEE--cCcEEEEecCCC---eEEEEecCCCcceEEe----------ccccCCCcCeEEEEe
Q 018591          249 RW--KLACETKAHEMAVLCVCL--VGEFLCSGSADK---SIGIWKREAFGKLCRV----------GAITGHEGPVKCLQA  311 (353)
Q Consensus       249 ~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~iw~~~~~~~~~~~----------~~~~~h~~~v~~~~~  311 (353)
                      ..  .....+.+|..+|.++++  ++++|++|+.|+   .|++||+++++....+          ..+.+|.+.|++++|
T Consensus       218 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f  297 (393)
T d1sq9a_         218 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  297 (393)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             ccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeecc
Confidence            32  233455678888988876  589999999886   5999999987643322          234589999999999


Q ss_pred             ecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          312 SPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       312 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +|+    +++|+|++.|++|++||+++++++.++.
T Consensus       298 spd----~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         298 NDS----GETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             CSS----SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCC----CCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            999    9999999999999999999998876654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-31  Score=216.68  Aligned_cols=265  Identities=13%  Similarity=0.090  Sum_probs=191.2

Q ss_pred             eeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeee
Q 018591           47 RMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLW  124 (353)
Q Consensus        47 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (353)
                      +.++...+|+..|++|+|+  +++|++|+.||+|++||++...... ..                            ...
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-~~----------------------------~~~   52 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-DL----------------------------LQS   52 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-EE----------------------------EEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-EE----------------------------EEe
Confidence            5667778999999999998  8899999999999999998764211 11                            111


Q ss_pred             eecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEE-E--eCCeEEEEcCCCcEEEEeCCCC
Q 018591          125 IEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV-A--SKGIVYSASADGKIKAWGKELG  198 (353)
Q Consensus       125 ~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~-~--~~~~l~~~~~dg~i~iwd~~~~  198 (353)
                      .+|..+|.+++|++   .++++|+.||.|++|++...........+........ +  .+..+++++.++.+++||++..
T Consensus        53 ~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~  132 (342)
T d1yfqa_          53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY  132 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHH
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccc
Confidence            27999999999987   4799999999999999988777666655544433332 2  5569999999999999998765


Q ss_pred             Ccccccceeeeecc-CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEE---EcCcEEE
Q 018591          199 KSHCHSLKGILEGH-KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVC---LVGEFLC  274 (353)
Q Consensus       199 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~  274 (353)
                      ..... .......+ .........+.+++..+++++.|+.|++|++.............. ......+..   .++..++
T Consensus       133 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         133 GDGVI-AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG-LKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             TTBCE-EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS-CSSCEEEEEECSGGGCEEE
T ss_pred             cccee-eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecc-cccceeeeEeecCCCCEEE
Confidence            42111 11111111 122225677788889999999999999999987644333222222 222233322   2477999


Q ss_pred             EecCCCeEEEEecCCCcce------------EEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCc
Q 018591          275 SGSADKSIGIWKREAFGKL------------CRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~  342 (353)
                      +++.||.+.+|+.......            .......+|...|++++|+|+    +.+|+||+.||.|++||+++++.+
T Consensus       211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~----~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR----HKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT----TCCEEEEETTSCEEEEETTTTEEE
T ss_pred             eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCC----ccEEEEECCCCEEEEEECCCCcEE
Confidence            9999999999997654311            011223467778999999999    999999999999999999998887


Q ss_pred             cccc
Q 018591          343 SDSE  346 (353)
Q Consensus       343 ~~~~  346 (353)
                      .+..
T Consensus       287 ~~~~  290 (342)
T d1yfqa_         287 KNFA  290 (342)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            6554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=201.46  Aligned_cols=236  Identities=15%  Similarity=0.157  Sum_probs=181.7

Q ss_pred             ceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeee
Q 018591           46 LRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWI  125 (353)
Q Consensus        46 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
                      .++++++.+|..+|++++|+.  |++|+.||+|++||+.+..                                     .
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~-------------------------------------~   43 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMH-------------------------------------Q   43 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEE-------------------------------------C
T ss_pred             cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCC-------------------------------------C
Confidence            478899999999999999976  9999999999999986542                                     1


Q ss_pred             ecCCceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccc
Q 018591          126 EHADSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCH  203 (353)
Q Consensus       126 ~~~~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  203 (353)
                      +|...|.++.+.+ ..+++++.|+++++|++...+       ....+..+.+ +++.++..+.++.+.+|+..+++    
T Consensus        44 ~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  112 (287)
T d1pgua2          44 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD----  112 (287)
T ss_dssp             CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC----
T ss_pred             CCCCCEEEEEecCCCeEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEeecccceeeecccee----
Confidence            7999999999998 889999999999999975432       2345667777 55566667778889999988876    


Q ss_pred             cceeeeeccCCceeeEEEEcCCCCeEEeecCCC-cEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCC
Q 018591          204 SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-FVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADK  280 (353)
Q Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  280 (353)
                       ....+..+.    ...++++++..+++++.++ .+++|++......   ......+...+.++++  ++.+|++|+.||
T Consensus       113 -~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg  184 (287)
T d1pgua2         113 -IIKSVRLNS----PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS---FDLKTPLRAKPSYISISPSETYIAAGDVMG  184 (287)
T ss_dssp             -EEEEEECSS----CEEEEEECSSEEEEEETTTSCEEEEETTEEEEE---EECSSCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -eeeeccccc----eeeeeeccCcceeeeccccceeeeeecccccee---eeeeeccCCceeEEEeccCccccccccccc
Confidence             444444332    3456778888888877765 7999998765322   1222335556666655  588999999999


Q ss_pred             eEEEEecCCCcceEEeccccCCCcCeEEEEeecCCC------CCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          281 SIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAV------GGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       281 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      .|++||+.+++.  ....+.+|..+|.+++|+|...      .++.+|++|+.|++|++|+++++..
T Consensus       185 ~i~i~d~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~  249 (287)
T d1pgua2         185 KILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK  249 (287)
T ss_dssp             CEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred             cccceeeccccc--ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence            999999988663  3345678999999999998521      1267999999999999999987543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=2.1e-28  Score=200.28  Aligned_cols=273  Identities=8%  Similarity=0.021  Sum_probs=201.4

Q ss_pred             EEEEE-CCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCC--cEEEEEcccCccceeEEe
Q 018591           20 SSLAL-CGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDS--RIRVWKVSRSSENVFRLV   94 (353)
Q Consensus        20 ~~~~~-~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg--~i~~w~~~~~~~~~~~~~   94 (353)
                      ..... +|+++|+++. |.|++||+.++..++.  .|...|.+++|+  +++|++++.+.  .|++||.++++.      
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~------   78 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA------   78 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE------
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE------
Confidence            44454 5889998875 7999999988877653  578899999998  77787766543  799999988751      


Q ss_pred             eccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceE
Q 018591           95 DTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVN  172 (353)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  172 (353)
                                                 ..+..|...|.+++|+|  ++|++++.++.+++|++.+++....+..|...+.
T Consensus        79 ---------------------------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (360)
T d1k32a3          79 ---------------------------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  131 (360)
T ss_dssp             ---------------------------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             ---------------------------EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccccccc
Confidence                                       12237899999999999  8999999999999999999999988888999999


Q ss_pred             EEEEeCC--eEEEE----------cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEE
Q 018591          173 GLVASKG--IVYSA----------SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMG  240 (353)
Q Consensus       173 ~i~~~~~--~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  240 (353)
                      +++|+++  +|+.+          ..++.+++||+.+++     . .....+.... ..++|+|+|++|++++.++.+.+
T Consensus       132 ~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~-----~-~~~~~~~~~~-~~~~~spdg~~l~~~s~~~~~~~  204 (360)
T d1k32a3         132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----I-FAATTENSHD-YAPAFDADSKNLYYLSYRSLDPS  204 (360)
T ss_dssp             CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-----E-EECSCSSSBE-EEEEECTTSCEEEEEESCCCCCE
T ss_pred             chhhccceeeeeeeccccccceeeccccceeeeccccCc-----e-eeeccccccc-ccccccCCCCEEEEEeCCCceEc
Confidence            9999443  55543          345569999998875     2 2333344444 78999999999999999999999


Q ss_pred             eeccccccce----e---e--------------------------------eeeccccceeEEEEEEc------------
Q 018591          241 WEGNVEIVRW----K---L--------------------------------ACETKAHEMAVLCVCLV------------  269 (353)
Q Consensus       241 ~d~~~~~~~~----~---~--------------------------------~~~~~~~~~~v~~~~~~------------  269 (353)
                      |+........    +   .                                ...+.........+...            
T Consensus       205 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (360)
T d1k32a3         205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH  284 (360)
T ss_dssp             ECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCC
T ss_pred             ccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEec
Confidence            9864421100    0   0                                00000001111122111            


Q ss_pred             ---CcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          270 ---GEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       270 ---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                         +.++++++.++.|++||+.+++.       ..|.+.|.+++|+||    |++|++++.||.|++|++++++...+..
T Consensus       285 ~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~v~~~~~SpD----G~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         285 GEFAAYYQGAPEKGVLLKYDVKTRKV-------TEVKNNLTDLRLSAD----RKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             CSHHHHHHCCCCCEEEEEEETTTCCE-------EEEEEEEEEEEECTT----SCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             CCCeeEEEecCCCCEEEEEECCCCeE-------EEecCCcCEEEECCC----CCEEEEEECCCeEEEEECCCCCcceEEE
Confidence               22456677889999999987652       234567999999999    9999999999999999999998877654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=6.4e-26  Score=189.53  Aligned_cols=286  Identities=10%  Similarity=0.042  Sum_probs=189.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeecccccccee
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYL  104 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~  104 (353)
                      -++++++.||+|++||+.+++.+.++..|. .+..++|+  |+++++++.||++++||+.+++......+...       
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~-------  104 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-------  104 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-------
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC-------
Confidence            356888899999999999999999998875 58899998  89999999999999999998874332222211       


Q ss_pred             eeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-EEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eCC-
Q 018591          105 GKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-YSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKG-  179 (353)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~-  179 (353)
                                          .+|...+.++.|+|  +++ +++..++.+.+||..+++++..+..|...+....+ .++ 
T Consensus       105 --------------------~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (426)
T d1hzua2         105 --------------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  164 (426)
T ss_dssp             --------------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             --------------------CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence                                14555666777777  554 55568999999999999888877666555444444 111 


Q ss_pred             -eEEEEcCCCc-----------EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeec-CCCcEEEeecccc
Q 018591          180 -IVYSASADGK-----------IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG-SDGFVMGWEGNVE  246 (353)
Q Consensus       180 -~l~~~~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  246 (353)
                       ..++.+.|+.           +.+++.....    ........+...+ ..+.++|++++++++. .+..+.+++....
T Consensus       165 ~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         165 VAAIIASHEHPEFIVNVKETGKVLLVNYKDID----NLTVTSIGAAPFL-ADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECSSSS----SCEEEEEECCSSE-EEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEEEecccc----ceeeEEeccCCcc-EeeeECCCCcEEEeeeecccceeeeecccc
Confidence             3334444444           4444443332    1122222333444 8899999998877664 3445666665443


Q ss_pred             ccc--------------------------------------------------eeeeeeccccceeE--EEEEEcCcEEE
Q 018591          247 IVR--------------------------------------------------WKLACETKAHEMAV--LCVCLVGEFLC  274 (353)
Q Consensus       247 ~~~--------------------------------------------------~~~~~~~~~~~~~v--~~~~~~~~~l~  274 (353)
                      ...                                                  ++....+.+|...+  .+++|++++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~  319 (426)
T d1hzua2         240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  319 (426)
T ss_dssp             EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEE
T ss_pred             cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEE
Confidence            211                                                  01222333444434  44556788888


Q ss_pred             E-------ecCCCeEEEEecCCCcceEEec------cccCCCcCeEEEEeecCCCCCCeEEE-E----ccCCCeEEEEEc
Q 018591          275 S-------GSADKSIGIWKREAFGKLCRVG------AITGHEGPVKCLQASPNAVGGGFLLY-S----GSLDKSLRVWWV  336 (353)
Q Consensus       275 ~-------~~~dg~i~iw~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~~~~l~-s----~~~dg~i~iw~~  336 (353)
                      +       ++.+++|++||+.+++....+.      .+..|...|.+++|+||    |++++ +    ++.||.|+|||.
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD----Gk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR----GDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS----SSEEEEEECCCTTSCCEEEEEET
T ss_pred             EeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC----CCEEEEEEecCCCCCCeEEEEEC
Confidence            4       5568899999999887443321      23356677999999999    87663 3    356899999999


Q ss_pred             CCCCCcccccCCC
Q 018591          337 SKQSSTSDSEEKS  349 (353)
Q Consensus       337 ~~~~~~~~~~~~~  349 (353)
                      ++.+........+
T Consensus       396 ~T~k~~~~i~~~~  408 (426)
T d1hzua2         396 KTLKLKAVVKDPR  408 (426)
T ss_dssp             TTTEEEEEECCTT
T ss_pred             CCCeEEEEECCCC
Confidence            9998776655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.6e-24  Score=180.70  Aligned_cols=185  Identities=11%  Similarity=0.061  Sum_probs=135.7

Q ss_pred             EEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           28 FILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        28 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      ++++.+.||+|.|||..+++.+..+..+. .+..++|+  |+++++++.||.+++||+.+++......+...        
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~--------  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--------  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--------
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC--------
Confidence            46899999999999999999999998874 68999998  89999999999999999988764333222221        


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeC--Ce-EEEecCCCcEEEEEcCCceeeeecccc-----------Ccce
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GL-IYSGSWDKTLKVWRVADLKCLESIKAH-----------DDAV  171 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~v  171 (353)
                                         .+|...+.+..|+|  ++ +++++.++.|++||..+++++..+..+           ....
T Consensus       105 -------------------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~  165 (432)
T d1qksa2         105 -------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  165 (432)
T ss_dssp             -------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             -------------------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence                               14555555566666  55 477888999999999999888776543           3445


Q ss_pred             EEEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCcEEEeeccc
Q 018591          172 NGLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNV  245 (353)
Q Consensus       172 ~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  245 (353)
                      ..+.++ ++  .+++...++.|.+||..+.+     .......+.+.....++|+|+|+++++++. ++.+.++|...
T Consensus       166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~-----~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         166 AAILASHYRPEFIVNVKETGKILLVDYTDLN-----NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSS-----EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             eEEEECCCCCEEEEEEccCCeEEEEEccCCC-----cceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            566663 33  56777888999999988765     333333233333489999999998776654 45677777654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=6.7e-23  Score=162.97  Aligned_cols=264  Identities=14%  Similarity=0.137  Sum_probs=188.8

Q ss_pred             EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      .++++.|++|.+||+++++.++++... .....++++  +++| ++++.++.|++||+.+++     .+..++       
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-----~~~~~~-------   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-----VIATVP-------   71 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-----EEEEEE-------
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-----eeeeee-------
Confidence            346678999999999999999998765 346788887  6766 577789999999998876     222221       


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe-CC--
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS-KG--  179 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~--  179 (353)
                                          .+ ..+..+.+++   ..++++..++.+.+|+..+++....+..+ ....++.+. ++  
T Consensus        72 --------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~  129 (301)
T d1l0qa2          72 --------------------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK  129 (301)
T ss_dssp             --------------------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred             --------------------cc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCe
Confidence                                22 3457788887   35566778889999999999988888654 456777883 33  


Q ss_pred             eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-CcEEEeeccccccceeeeeeccc
Q 018591          180 IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-GFVMGWEGNVEIVRWKLACETKA  258 (353)
Q Consensus       180 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~  258 (353)
                      .++++..++.+.+|+..+..     ....+..+.. + ..++++|++..++++..+ +.+.+|+....    ........
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  198 (301)
T d1l0qa2         130 LYVTNNGDKTVSVINTVTKA-----VINTVSVGRS-P-KGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVKV  198 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTE-----EEEEEECCSS-E-EEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEEC
T ss_pred             eeeeeccccceeeeeccccc-----eeeecccCCC-c-eEEEeeccccceeeecccccccccccccce----eeeecccc
Confidence            45677778999999999886     4444444433 3 889999999888777655 56667766655    22222222


Q ss_pred             cce-eEEEEEEcCcEEEEec---CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE-EEccCCCeEEE
Q 018591          259 HEM-AVLCVCLVGEFLCSGS---ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL-YSGSLDKSLRV  333 (353)
Q Consensus       259 ~~~-~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l-~s~~~dg~i~i  333 (353)
                      +.. .-..+.+++..++++.   .++.|++||..+++   .+..+.. ...+.+++|+||    |++| ++++.|+.|++
T Consensus       199 ~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~---~~~~~~~-~~~~~~va~spd----g~~l~va~~~~~~i~v  270 (301)
T d1l0qa2         199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---ITARIPV-GPDPAGIAVTPD----GKKVYVALSFCNTVSV  270 (301)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE---EEEEEEC-CSSEEEEEECTT----SSEEEEEETTTTEEEE
T ss_pred             cCCcceeeccccccccccccccceeeeeeeeecCCCe---EEEEEcC-CCCEEEEEEeCC----CCEEEEEECCCCeEEE
Confidence            222 2234455677665543   45789999999877   3444443 346899999999    8866 67888999999


Q ss_pred             EEcCCCCCccccc
Q 018591          334 WWVSKQSSTSDSE  346 (353)
Q Consensus       334 w~~~~~~~~~~~~  346 (353)
                      ||+++++.+.+.+
T Consensus       271 ~D~~t~~~~~~~~  283 (301)
T d1l0qa2         271 IDTATNTITATMA  283 (301)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EECCCCeEEEEEe
Confidence            9999998876654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.1e-22  Score=164.36  Aligned_cols=272  Identities=8%  Similarity=0.052  Sum_probs=177.4

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccC--ceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeecccccc
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHG--DGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      +++++++.|++|++||+++++.+..+..+  ...+.+++++  ++++ ++++.++.|.+||+.+++.     +..++...
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-----~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-----LGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-----EEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-----EEEEecCC
Confidence            68999999999999999999999988643  3456788887  6776 5677899999999998762     22221100


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec------------CCCcEEEEEcCCceeeeecccc
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS------------WDKTLKVWRVADLKCLESIKAH  167 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~  167 (353)
                      .                      ..+...+..++++|  +.++++.            .++.+.+||..+++....+.. 
T Consensus        77 ~----------------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  133 (337)
T d1pbyb_          77 P----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             T----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             C----------------------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-
Confidence            0                      01122233466666  4454443            567899999999998888764 


Q ss_pred             CcceEEEEEeC-C-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCce----------------------eeEEEEc
Q 018591          168 DDAVNGLVASK-G-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVS----------------------LNSVVVS  223 (353)
Q Consensus       168 ~~~v~~i~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------------------v~~~~~~  223 (353)
                      ...+..+++++ + ++++++.  .+.+||..+++     ....+..+....                      .......
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (337)
T d1pbyb_         134 PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGT-----LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTAR  206 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESS--SEEEEETTTTE-----EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred             cCCceEEEEcCCCCEEEEEcC--CcceeeeecCc-----EEEEeecCCccccceecCCcceeeccccccceeeeeeeeee
Confidence            45677888833 3 6777654  47889988775     222222211100                      0011111


Q ss_pred             CCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCcceEEeccccC
Q 018591          224 DDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFGKLCRVGAITG  301 (353)
Q Consensus       224 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  301 (353)
                      .+......+..++.+.+|+...+....   .....+......+..  ++.+++.+  ++.|++||+.+++.   +..+ .
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~---~~~~-~  277 (337)
T d1pbyb_         207 KDIDPADPTAYRTGLLTMDLETGEMAM---REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS---IKRV-P  277 (337)
T ss_dssp             TTSCTTSGGGEEEEEEEEETTTCCEEE---EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE---EEEE-E
T ss_pred             eccceeeecccCccEEEEEcCCCcEEE---EEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcE---EEEE-c
Confidence            222223333445567888877763221   122233334444444  46666654  58999999999874   3333 2


Q ss_pred             CCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          302 HEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       302 h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      +...+.+++|+||    |++|++++.||+|++||.++.+.+.+..
T Consensus       278 ~~~~~~~~~~s~d----G~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         278 LPHSYYSVNVSTD----GSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             CSSCCCEEEECTT----SCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEEECCC----CCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            5567899999999    9999999999999999999998877654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=2.1e-22  Score=164.27  Aligned_cols=244  Identities=9%  Similarity=0.037  Sum_probs=169.3

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCC--cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCc
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGK--DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSR   77 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~   77 (353)
                      ..++.++ + +|...|++++|+  |++|++++.+.  .|++||.++++.. .+..|...|.+++|+  +++|++++.++.
T Consensus        32 ~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~  108 (360)
T d1k32a3          32 SGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE  108 (360)
T ss_dssp             TSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccc
Confidence            4444443 3 699999999996  88888776553  7999999887655 567788999999998  889999999999


Q ss_pred             EEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEE----------ec
Q 018591           78 IRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS----------GS  145 (353)
Q Consensus        78 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~----------~~  145 (353)
                      +++|++++...                                ...+..|...+.+++|+|  ++|+.          +.
T Consensus       109 ~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3         109 IMTVDLETGKP--------------------------------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             EEEEETTTCCE--------------------------------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             cccccccccce--------------------------------eeeeecccccccchhhccceeeeeeeccccccceeec
Confidence            99999987762                                122236777888899998  56664          34


Q ss_pred             CCCcEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEcCCCcEEEEeCCCCCccccc---c---------------
Q 018591          146 WDKTLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSASADGKIKAWGKELGKSHCHS---L---------------  205 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~---~---------------  205 (353)
                      .++.+++||+.+++..... .+...+..+.|++  ..|++++.++.+++||..........   .               
T Consensus       157 ~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL  235 (360)
T ss_dssp             CEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred             cccceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceE
Confidence            4567999999887765554 4667788888843  38999999999999986543210000   0               


Q ss_pred             --------------------eeeeeccCCceeeEEEEcCCC-------------CeEEeecCCCcEEEeeccccccceee
Q 018591          206 --------------------KGILEGHKDVSLNSVVVSDDG-------------KWVYGGGSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       206 --------------------~~~~~~~~~~~v~~~~~~~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~~~  252 (353)
                                          ...+...... ...+...+++             .++++++.++.+++||+.+++    .
T Consensus       236 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~  310 (360)
T d1k32a3         236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----V  310 (360)
T ss_dssp             CCGGGSCCCCCCCCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC----E
T ss_pred             CCCcCcccccceeecccccceeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe----E
Confidence                                0000000011 1223333222             235566778899999998763    1


Q ss_pred             eeeccccceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcc
Q 018591          253 ACETKAHEMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       253 ~~~~~~~~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  292 (353)
                      .    .+...+  .++++||++|++++.||.|++||++.++.
T Consensus       311 ~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         311 T----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             E----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             E----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            1    122334  45566799999999999999999998874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=1.1e-22  Score=164.97  Aligned_cols=277  Identities=12%  Similarity=0.026  Sum_probs=177.4

Q ss_pred             EEC--CcEEEEEeCCCcEEEEeCCCceeeEEec-cCceeeEEEEEe--CCEE-EEecCCCcEEEEEcccCccceeEEeec
Q 018591           23 ALC--GEFILSASQGKDIIVWQQPDLRMFTKFG-HGDGSVKAVVTV--GNKV-FTAHQDSRIRVWKVSRSSENVFRLVDT   96 (353)
Q Consensus        23 ~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l-~s~~~dg~i~~w~~~~~~~~~~~~~~~   96 (353)
                      +|+  +++|++++.|++|.+||+.+++.+.++. .|...+.+++|+  ++++ +++..++.|.+||+.+++.     +..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-----~~~   77 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-----TFH   77 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EEE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-----eee
Confidence            554  8899999999999999999999999886 445667889997  6665 5667889999999988762     221


Q ss_pred             cccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe------------cCCCcEEEEEcCCceeee
Q 018591           97 LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG------------SWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~------------~~dg~v~iwd~~~~~~~~  162 (353)
                      +.......                     .+...+..+++++  ++++++            ..++.+.+||..+++...
T Consensus        78 ~~~~~~~~---------------------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  136 (346)
T d1jmxb_          78 ANLSSVPG---------------------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK  136 (346)
T ss_dssp             EESCCSTT---------------------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred             eccccccc---------------------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeee
Confidence            11100000                     1112233456666  444443            357889999998877665


Q ss_pred             ecccc--CcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE----------
Q 018591          163 SIKAH--DDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV----------  229 (353)
Q Consensus       163 ~~~~~--~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l----------  229 (353)
                      .+..+  ...+..+.+ .++.+++.+  +.+.+|+..+++     ....+..+.. + ..+.++|++..+          
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~  207 (346)
T d1jmxb_         137 PVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGK-----YTVALPLRNW-N-RKGYSAPDVLYFWPHQSPRHEF  207 (346)
T ss_dssp             CSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCC-----EEEEECSTTC-C-CTTBCCCBCCCCCCCCCTTCEE
T ss_pred             EEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCC-----EEEEEecCCC-c-cceEEeccccEEEEEecCCCce
Confidence            55433  334555556 444555544  568999988776     3333333222 1 334445544433          


Q ss_pred             ----------------EeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCcEEEEecCCCeEEEEecCCCc
Q 018591          230 ----------------YGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGEFLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       230 ----------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw~~~~~~  291 (353)
                                      .++..++.+.+|+...+...   ......+...+.....  ++.+++... ++.|++||..+++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~  283 (346)
T d1jmxb_         208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRK  283 (346)
T ss_dssp             EEEEEEEEC-------CCCEEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTE
T ss_pred             EeeeeeeeeccCceeEeeccCCceEEEEECCCCceE---EEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCc
Confidence                            23333445666666655211   1222334444444443  455666554 4579999999887


Q ss_pred             ceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccccc
Q 018591          292 KLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       292 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      .   +..+. +...+.+++|+||    |++|++++.||.|++||+++.+.+.+.+
T Consensus       284 ~---~~~~~-~~~~~~~va~s~D----G~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         284 L---IKAAN-LDHTYYCVAFDKK----GDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             E---EEEEE-CSSCCCEEEECSS----SSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             E---EEEEc-CCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            3   33333 3457999999999    9999999999999999999998887655

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=4.9e-21  Score=159.68  Aligned_cols=306  Identities=9%  Similarity=-0.013  Sum_probs=192.5

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEE--e---ccCceeeEEEEEe--CCEEE-E
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTK--F---GHGDGSVKAVVTV--GNKVF-T   71 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~--~---~~~~~~v~~~~~~--~~~l~-s   71 (353)
                      ...+++.+.+++.|. .+..++|+  |++|++++.||+|++||+.+++....  +   ..|.+.+.++.|+  |++++ +
T Consensus        48 D~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~  126 (426)
T d1hzua2          48 DGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG  126 (426)
T ss_dssp             ETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEe
Confidence            357899999999885 58999996  99999999999999999998875433  3   2455556666665  77764 5


Q ss_pred             ecCCCcEEEEEcccCccceeEEeecc-------ccccc-eeeeecccceeEe-----------e--c--ccceeeeeecC
Q 018591           72 AHQDSRIRVWKVSRSSENVFRLVDTL-------PTTKD-YLGKFMKQSNYVQ-----------T--R--RHHKRLWIEHA  128 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~-----------~--~--~~~~~~~~~~~  128 (353)
                      +..++.+++||..+............       ..... .............           .  .  .........+.
T Consensus       127 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  206 (426)
T d1hzua2         127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  206 (426)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC
T ss_pred             ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC
Confidence            56889999999988763222111100       00000 0111111111100           0  0  00112234677


Q ss_pred             CceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeecccc--CcceEEEEE--eCC---eEEEEcCCCcEEEEeCCCC
Q 018591          129 DSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAH--DDAVNGLVA--SKG---IVYSASADGKIKAWGKELG  198 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~--~~~---~l~~~~~dg~i~iwd~~~~  198 (353)
                      ..+..+.+++  ++++ +...+..+.+++..+++.+......  ..+.....+  ...   ..+..+.|+.+.+|+....
T Consensus       207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~  286 (426)
T d1hzua2         207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK  286 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred             CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence            7888999998  4444 4456778999999998887766432  222223333  222   3345566888999887654


Q ss_pred             Cc--ccccceeeeeccCCceeeEEEEcCCCCeEEe-------ecCCCcEEEeeccccccceeeee-----eccccceeEE
Q 018591          199 KS--HCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-------GGSDGFVMGWEGNVEIVRWKLAC-----ETKAHEMAVL  264 (353)
Q Consensus       199 ~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~v~  264 (353)
                      ..  ........+.+|...+ ..++|+|+++++++       +..+++|++||+.+++...+...     .+..+...+.
T Consensus       287 ~~~~~~~~~~~~l~g~~~~v-~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~  365 (426)
T d1hzua2         287 NHPQYAWKKVAELQGQGGGS-LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVV  365 (426)
T ss_dssp             TCTTTBTSEEEEEECSSSCC-CCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEE
T ss_pred             ccccccceEeEEEecCCCce-eEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEE
Confidence            31  1123566778888776 99999999999994       55678999999988754333221     1223445566


Q ss_pred             EE--EEcCcEEEE-----ecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEE
Q 018591          265 CV--CLVGEFLCS-----GSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLL  322 (353)
Q Consensus       265 ~~--~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l  322 (353)
                      .+  +++|++++.     ++.+|.|+|||.++.+   ....+.++.      .++|+    |++-
T Consensus       366 ~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k---~~~~i~~~~------~~tp~----Gk~~  417 (426)
T d1hzua2         366 QPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK---LKAVVKDPR------LITPT----GKFN  417 (426)
T ss_dssp             EEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE---EEEEECCTT------CCSEE----EEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe---EEEEECCCC------ccCCC----ceEe
Confidence            54  456886643     2468899999999987   444455553      34677    7764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1.2e-18  Score=138.11  Aligned_cols=244  Identities=13%  Similarity=0.144  Sum_probs=173.4

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CC-EEEEecCC
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GN-KVFTAHQD   75 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~d   75 (353)
                      .+++++.+++++.. ..+..++|+  |++| ++++.++.|++||+.+++.+..+..+.. +..+.++  +. .++++..+
T Consensus        18 D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          18 DVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             ETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTT
T ss_pred             ECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccccccccccccccccccc
Confidence            35688888888865 456889996  7766 5677899999999999999999987754 5677787  44 45566778


Q ss_pred             CcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C-eEEEecCCCcEEE
Q 018591           76 SRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G-LIYSGSWDKTLKV  152 (353)
Q Consensus        76 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~dg~v~i  152 (353)
                      +.+.+|+..+++     ....+                            .+.....++.+++  . .++++..++.+.+
T Consensus        96 ~~~~~~~~~~~~-----~~~~~----------------------------~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          96 STLSVIDTTSNT-----VAGTV----------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             TEEEEEETTTTE-----EEEEE----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ceeeecccccce-----eeeec----------------------------cccccceEEEeecCCCeeeeeeccccceee
Confidence            899999998765     22111                            3455677888888  3 4566777899999


Q ss_pred             EEcCCceeeeeccccCcceEEEEEeC--CeEEEEc-CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeE
Q 018591          153 WRVADLKCLESIKAHDDAVNGLVASK--GIVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV  229 (353)
Q Consensus       153 wd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  229 (353)
                      |+..+.+.+..+..+ ..+..+.+.+  ..+++++ .++.+.+|+.....     .......+ ..+ ..++++++++.+
T Consensus       143 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~-~~~~~~~~g~~~  214 (301)
T d1l0qa2         143 INTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-----VIDTVKVE-AAP-SGIAVNPEGTKA  214 (301)
T ss_dssp             EETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----EEEEEECS-SEE-EEEEECTTSSEE
T ss_pred             eeccccceeeecccC-CCceEEEeeccccceeeeccccccccccccccee-----eeeccccc-CCc-ceeecccccccc
Confidence            999999988887654 4567788833  3455554 45667788777665     33443333 333 789999999987


Q ss_pred             Eeec---CCCcEEEeeccccccceeeeeecccc-ceeEEEEEEcCcEE-EEecCCCeEEEEecCCCcc
Q 018591          230 YGGG---SDGFVMGWEGNVEIVRWKLACETKAH-EMAVLCVCLVGEFL-CSGSADKSIGIWKREAFGK  292 (353)
Q Consensus       230 ~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~  292 (353)
                      +++.   .++.|.+||..+++    ....+..+ ...-.+++++|++| ++++.++.|++||+++++.
T Consensus       215 ~v~~~~~~~~~v~v~D~~t~~----~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         215 YVTNVDKYFNTVSMIDTGTNK----ITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             EEEEECSSCCEEEEEETTTTE----EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccccccceeeeeeeeecCCCe----EEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            7654   34689999999873    33333322 22334555678876 6778899999999999873

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.6e-18  Score=138.18  Aligned_cols=276  Identities=11%  Similarity=0.124  Sum_probs=172.7

Q ss_pred             EEEEEeCCCcEEEEeCCCcee---eEEeccCceeeEEEEEe--CCEEEE-ecCCCcEEEEEcccCccceeEEeecccccc
Q 018591           28 FILSASQGKDIIVWQQPDLRM---FTKFGHGDGSVKAVVTV--GNKVFT-AHQDSRIRVWKVSRSSENVFRLVDTLPTTK  101 (353)
Q Consensus        28 ~l~s~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~--~~~l~s-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~  101 (353)
                      .+++++.|++|++|++.+...   ++.+ .|.+.+..|+|+  +++|++ +..|+.|++|+++......... ..     
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~-~~-----   78 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AE-----   78 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EE-----
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe-ee-----
Confidence            457778999999999875433   3333 456889999998  778754 5568999999998654221111 00     


Q ss_pred             ceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCCceeeee--ccccCcceEEEEE
Q 018591          102 DYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVADLKCLES--IKAHDDAVNGLVA  176 (353)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~  176 (353)
                                             ..+...+..++|+|  ++|++++ .++.|.+|+.........  ...+...+.++.+
T Consensus        79 -----------------------~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~  135 (333)
T d1ri6a_          79 -----------------------SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI  135 (333)
T ss_dssp             -----------------------EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE
T ss_pred             -----------------------cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEe
Confidence                                   13444566799999  6677766 477899998876554333  3345667788888


Q ss_pred             eCC--eEE-EEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceee
Q 018591          177 SKG--IVY-SASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKL  252 (353)
Q Consensus       177 ~~~--~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~  252 (353)
                      +++  .++ ....+..+.+|+.........................++|++++..++.. ...+...+++..........
T Consensus       136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (333)
T d1ri6a_         136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  215 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee
Confidence            333  444 44456779999987765222111111222222223789999999887654 45567777776554322221


Q ss_pred             eeecc------cc--ceeEEEEEEcCcEE-EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEE
Q 018591          253 ACETK------AH--EMAVLCVCLVGEFL-CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLY  323 (353)
Q Consensus       253 ~~~~~------~~--~~~v~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~  323 (353)
                      .....      ..  ......++++++++ +++..++.+.+|++........+.....+...+.+++|+||    |++|+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD----Gk~l~  291 (333)
T d1ri6a_         216 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS----GKYLI  291 (333)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT----SSEEE
T ss_pred             eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC----CCEEE
Confidence            11110      11  12234456667654 45567889999998876544344333344566889999999    88876


Q ss_pred             Ecc-CCCeEEEEEcC
Q 018591          324 SGS-LDKSLRVWWVS  337 (353)
Q Consensus       324 s~~-~dg~i~iw~~~  337 (353)
                      +++ .++.|++|++.
T Consensus       292 va~~~~~~v~v~~id  306 (333)
T d1ri6a_         292 AAGQKSHHISVYEIV  306 (333)
T ss_dssp             EECTTTCEEEEEEEE
T ss_pred             EEECCCCeEEEEEEE
Confidence            654 56899999664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3.4e-19  Score=148.17  Aligned_cols=85  Identities=7%  Similarity=-0.025  Sum_probs=67.4

Q ss_pred             CCCCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCcee--eEEe---ccCceeeEEEEEe--CCEE-EE
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRM--FTKF---GHGDGSVKAVVTV--GNKV-FT   71 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~--~~~~---~~~~~~v~~~~~~--~~~l-~s   71 (353)
                      ...+++.+..+..|. .+..++|+  |+++++++.||.|++||+.+++.  ...+   ..|.+.+.+..|+  |++| ++
T Consensus        48 D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs  126 (432)
T d1qksa2          48 DGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG  126 (432)
T ss_dssp             ETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEE
Confidence            357899999999884 69999996  99999999999999999988763  3333   3455555555554  7775 67


Q ss_pred             ecCCCcEEEEEcccCc
Q 018591           72 AHQDSRIRVWKVSRSS   87 (353)
Q Consensus        72 ~~~dg~i~~w~~~~~~   87 (353)
                      ++.+++|++||.++++
T Consensus       127 ~~~~~~v~i~d~~t~~  142 (432)
T d1qksa2         127 AYWPPQYVIMDGETLE  142 (432)
T ss_dssp             EEETTEEEEEETTTCC
T ss_pred             cCCCCeEEEEeCcccc
Confidence            8889999999998876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=3.8e-17  Score=133.52  Aligned_cols=270  Identities=11%  Similarity=-0.035  Sum_probs=177.3

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEEe----------CCCcEEEEeCCCceeeEEeccCceeeEEEEEe-----
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSAS----------QGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-----   65 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-----   65 (353)
                      ..+++.+.++.++..+  .++|+  |++|++++          .++.|.+||..+++.+..+..+......+...     
T Consensus        54 ~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~  131 (373)
T d2madh_          54 AGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA  131 (373)
T ss_pred             CCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEE
Confidence            4688888888887765  57775  88888875          45789999999999998887776555444333     


Q ss_pred             ----CCEEEE--ecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-
Q 018591           66 ----GNKVFT--AHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-  138 (353)
Q Consensus        66 ----~~~l~s--~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  138 (353)
                          ++.++.  ...++.+.+|+....+     .                               ..+.....++.+++ 
T Consensus       132 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----~-------------------------------~~~~~~~~~~~~s~~  175 (373)
T d2madh_         132 NTPNNADLLFFQFAAGPAVGLVVQGGSS-----D-------------------------------DQLLSSPTCYHIHPG  175 (373)
T ss_pred             EEeCCCcEEEEEEcCCCceEEeeccCCe-----E-------------------------------EEEeccceeEEEecC
Confidence                332222  2233445555544332     0                               13444456777777 


Q ss_pred             --CeEEEecCCCcEEEEEcCCceeeeeccccC------cceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeee
Q 018591          139 --GLIYSGSWDKTLKVWRVADLKCLESIKAHD------DAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGIL  209 (353)
Q Consensus       139 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  209 (353)
                        ..+++.+.|+.+.+||...++.......+.      .....+.+ .+..++..+.++.+.+|+......   ......
T Consensus       176 g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~  252 (373)
T d2madh_         176 APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA---TNKAPI  252 (373)
T ss_pred             CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE---EEEEee
Confidence              567889999999999998877766543321      12233344 344677788899999999887651   111222


Q ss_pred             eccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCC
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREA  289 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~  289 (353)
                      ..+.... ....+.|.....+..+.|+....+                        ....+..+++...++.+.+||..+
T Consensus       253 ~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~------------------------~~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         253 DALSGGR-KADTWRPGGWQQVAYLKSSDGIYL------------------------LTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             ccccCcE-EeeeeccCcceeeEEecCCCeEEE------------------------ecCCCceEEeecCCCeEEEEECCC
Confidence            2222222 445555555555555555432221                        122355677788889999999999


Q ss_pred             CcceEEeccccCCCcCeEEEEeecCCCCCCe--EEEEccCCCeEEEEEcCCCCCccccc
Q 018591          290 FGKLCRVGAITGHEGPVKCLQASPNAVGGGF--LLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       290 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ++.   +..+ .+...+.+++|+||    |+  ++++++.|+.|++||+.+++.+.+..
T Consensus       308 ~~~---~~~~-~~~~~~~~~a~spD----G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         308 GQT---SSQI-SLGHDVDAISVAQD----GGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CcE---EEEe-cCCCCeeEEEECCC----CCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            873   4333 35667999999999    77  45789999999999999999887765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.7e-18  Score=140.62  Aligned_cols=287  Identities=8%  Similarity=-0.023  Sum_probs=177.7

Q ss_pred             ECCcEEEEE-----eCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe----------cCCCcEEEEEcccC
Q 018591           24 LCGEFILSA-----SQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA----------HQDSRIRVWKVSRS   86 (353)
Q Consensus        24 ~~~~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~----------~~dg~i~~w~~~~~   86 (353)
                      -+++.++..     ..++.|.+||..+++.+.++..+..+  .++|+  +++|+++          ..|+.|++||..++
T Consensus        11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~   88 (355)
T d2bbkh_          11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL   88 (355)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC
Confidence            357776654     34567999999999999988765444  57776  7777654          45789999999887


Q ss_pred             ccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe--cCCCcEEEEEcCCceeee
Q 018591           87 SENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG--SWDKTLKVWRVADLKCLE  162 (353)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~--~~dg~v~iwd~~~~~~~~  162 (353)
                      +.     ...+......                 .   .........+.|++  +.++++  +.+..+.+|+..+++.+.
T Consensus        89 ~~-----~~~~~~~~~~-----------------~---~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_          89 LP-----TADIELPDAP-----------------R---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  143 (355)
T ss_dssp             CE-----EEEEEETTCC-----------------C---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             CE-----EEEEecCCcc-----------------e---eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence            62     2111100000                 0   01112233467777  555544  456789999999999888


Q ss_pred             eccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEee
Q 018591          163 SIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWE  242 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  242 (353)
                      .+..+... ......+...++.+.|+...++.......................+....+.+++..++.++.++.+++|+
T Consensus       144 ~~~~~~~~-~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  222 (355)
T d2bbkh_         144 MLDVPDCY-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID  222 (355)
T ss_dssp             EEECCSEE-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred             EEecCCcc-eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEe
Confidence            77654322 22222444555666677766665544331110001111111122235667888888899999999999999


Q ss_pred             ccccccceeeeee----------ccccceeEEEEEEcCcEEEEecC----------CCeEEEEecCCCcceEEeccccCC
Q 018591          243 GNVEIVRWKLACE----------TKAHEMAVLCVCLVGEFLCSGSA----------DKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       243 ~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                      +..+.........          ..........+++++..++....          .+.|.+||..+++.   +..+. +
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~---~~~~~-~  298 (355)
T d2bbkh_         223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER---LAKFE-M  298 (355)
T ss_dssp             CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE---EEEEE-E
T ss_pred             cCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE---EEEec-C
Confidence            9876322111110          00111233566667776665433          24799999998873   43333 3


Q ss_pred             CcCeEEEEeecCCCCCCe--EEEEccCCCeEEEEEcCCCCCccccc
Q 018591          303 EGPVKCLQASPNAVGGGF--LLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       303 ~~~v~~~~~~~~~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                      ...+.+++|+||    |+  ++++++.|+.|++||+++++.+.+..
T Consensus       299 ~~~~~~~a~spD----G~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         299 GHEIDSINVSQD----EKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEECEEEECCS----SSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEEEcCC----CCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            456899999999    76  56778889999999999999887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=6.9e-18  Score=135.75  Aligned_cols=249  Identities=11%  Similarity=0.067  Sum_probs=164.8

Q ss_pred             CCCCceeeeeeCc--cCceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccCc-----eeeEEEEEe--CCEEE
Q 018591            3 CKSHRSLAVLSGH--VGSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGD-----GSVKAVVTV--GNKVF   70 (353)
Q Consensus         3 ~~~~~~~~~l~~h--~~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~--~~~l~   70 (353)
                      .++++.++++..+  ...+.+++|+  |+++ ++++.++.|.+||+.+++.+..+..+.     ..+..++++  +++++
T Consensus        18 ~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence            5678888888754  4567899996  7776 567789999999999999998886553     334466776  67777


Q ss_pred             EecC------------CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC
Q 018591           71 TAHQ------------DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN  138 (353)
Q Consensus        71 s~~~------------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  138 (353)
                      ++..            ++.+.+||..++.     ....+                            .+...+..+.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~----------------------------~~~~~~~~~~~s~  144 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLS-----RRKAF----------------------------EAPRQITMLAWAR  144 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTE-----EEEEE----------------------------ECCSSCCCEEECT
T ss_pred             EeecCCcceeeeccccccceeeccccCCe-----EEEec----------------------------cccCCceEEEEcC
Confidence            6653            4567777776654     11111                            3445577888988


Q ss_pred             --CeEEEecCCCcEEEEEcCCceeeeeccccCcce------EEEEE-------------------eCCeEEEEcCCCcEE
Q 018591          139 --GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAV------NGLVA-------------------SKGIVYSASADGKIK  191 (353)
Q Consensus       139 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v------~~i~~-------------------~~~~l~~~~~dg~i~  191 (353)
                        .++++++  +.+.+||..+++....+..+....      ....+                   .......+..++.+.
T Consensus       145 dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (337)
T d1pbyb_         145 DGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL  222 (337)
T ss_dssp             TSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred             CCCEEEEEc--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence              6777776  457889999888776654321110      00000                   111222334456788


Q ss_pred             EEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc
Q 018591          192 AWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE  271 (353)
Q Consensus       192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  271 (353)
                      +||..++..    .......+.... ..+.++|++.+++.+  ++.+++||+.++.......   ..+.....+++++|+
T Consensus       223 ~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~  292 (337)
T d1pbyb_         223 TMDLETGEM----AMREVRIMDVFY-FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEETTTCCE----EEEEEEECSSCE-EEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSC
T ss_pred             EEEcCCCcE----EEEEecCCCcce-EEEEecccceEEEEc--cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCC
Confidence            999888761    222333344444 888999999988776  5789999999884332221   122333455666799


Q ss_pred             EEEEecCCCeEEEEecCCCcceEEe
Q 018591          272 FLCSGSADKSIGIWKREAFGKLCRV  296 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~~~~~~  296 (353)
                      +|++++.++.|++||.++.+....+
T Consensus       293 ~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         293 TVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCcEEEEE
Confidence            9999999999999999998854443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=4.2e-16  Score=125.63  Aligned_cols=260  Identities=10%  Similarity=0.021  Sum_probs=163.6

Q ss_pred             CCCCCceeeeee-CccCceEEEEEC--CcEE-EEEeCCCcEEEEeCCCceeeEEeccCc------eeeEEEEEe--CCEE
Q 018591            2 PCKSHRSLAVLS-GHVGSVSSLALC--GEFI-LSASQGKDIIVWQQPDLRMFTKFGHGD------GSVKAVVTV--GNKV   69 (353)
Q Consensus         2 ~~~~~~~~~~l~-~h~~~v~~~~~~--~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~--~~~l   69 (353)
                      .+++++++.+++ .|...+.+++|+  |+++ ++++.++.|++||+.+++.+..+....      ..+..++++  ++++
T Consensus        24 D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l  103 (346)
T d1jmxb_          24 DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV  103 (346)
T ss_dssp             ETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred             ECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEE
Confidence            457889999887 466778999995  7766 566688999999999999988775432      234566776  6777


Q ss_pred             EEec------------CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEe
Q 018591           70 FTAH------------QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVY  137 (353)
Q Consensus        70 ~s~~------------~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  137 (353)
                      ++++            .++.+.+|+..++.........                              .....+..+.+.
T Consensus       104 ~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~  153 (346)
T d1jmxb_         104 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------------------------------PMPRQVYLMRAA  153 (346)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------------------------------ECCSSCCCEEEC
T ss_pred             EEEecCCcceeeeeccCcceEEEEecccceeeeEEEee------------------------------eccCceEEEEec
Confidence            6654            3566777877765421111000                              122234445555


Q ss_pred             C-CeEEEecCCCcEEEEEcCCceeeeeccccCcc---------------------eEEE--EE--e--CCeEEEEcCCCc
Q 018591          138 N-GLIYSGSWDKTLKVWRVADLKCLESIKAHDDA---------------------VNGL--VA--S--KGIVYSASADGK  189 (353)
Q Consensus       138 ~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------------------v~~i--~~--~--~~~l~~~~~dg~  189 (353)
                      + ..+++.+  +.+.+|+..+++.+..+..+...                     +...  ..  .  ...+.++..++.
T Consensus       154 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (346)
T d1jmxb_         154 DDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  231 (346)
T ss_dssp             TTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCCEEEEeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce
Confidence            5 4444443  55889999888777665432110                     0000  00  0  113444555677


Q ss_pred             EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEc
Q 018591          190 IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLV  269 (353)
Q Consensus       190 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~  269 (353)
                      +.+||..++.    ........+.... ..+.+++++.+++... ++.+.+||..+++.....   ..++...-.+++++
T Consensus       232 ~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~---~~~~~~~~va~s~D  302 (346)
T d1jmxb_         232 YLSVDLKTGK----THTQEFADLTELY-FTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAA---NLDHTYYCVAFDKK  302 (346)
T ss_dssp             EEEEETTTCC----EEEEEEEECSSCE-EEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEE---ECSSCCCEEEECSS
T ss_pred             EEEEECCCCc----eEEEEeeccccee-EEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEE---cCCCCEEEEEEcCC
Confidence            8899988876    1223334444444 7888999888877765 457999999887322211   12344445667778


Q ss_pred             CcEEEEecCCCeEEEEecCCCcceEEeccccCC
Q 018591          270 GEFLCSGSADKSIGIWKREAFGKLCRVGAITGH  302 (353)
Q Consensus       270 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h  302 (353)
                      |++|++++.|+.|++||.++++....+....++
T Consensus       303 G~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         303 GDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             SSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             CCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence            999999999999999999998844444333343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=9.8e-15  Score=118.06  Aligned_cols=265  Identities=13%  Similarity=0.102  Sum_probs=156.9

Q ss_pred             CCCCceeeeeeCccCceEEEEEC--CcEEEEE----------eCCCcEEEEeCCCceeeEEeccCce-------eeEEEE
Q 018591            3 CKSHRSLAVLSGHVGSVSSLALC--GEFILSA----------SQGKDIIVWQQPDLRMFTKFGHGDG-------SVKAVV   63 (353)
Q Consensus         3 ~~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~----------~~dg~v~vwd~~~~~~~~~~~~~~~-------~v~~~~   63 (353)
                      ..+++++.++..+..+  .++|+  |++|+++          +.|+.|++||..+++.+..+..+..       ....+.
T Consensus        35 ~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~  112 (355)
T d2bbkh_          35 GEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS  112 (355)
T ss_dssp             TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred             CCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEE
Confidence            4678888888876555  67885  7777654          3478999999999998887754322       223456


Q ss_pred             Ee--CCEEEEe--cCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCC
Q 018591           64 TV--GNKVFTA--HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNG  139 (353)
Q Consensus        64 ~~--~~~l~s~--~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  139 (353)
                      |+  +++++.+  +.+..+.+|+..+++     .+..++..                            .........+.
T Consensus       113 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~----------------------------~~~~~~~~~~~  159 (355)
T d2bbkh_         113 LTPDGKTLLFYQFSPAPAVGVVDLEGKA-----FKRMLDVP----------------------------DCYHIFPTAPD  159 (355)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTE-----EEEEEECC----------------------------SEEEEEEEETT
T ss_pred             EecCCCeeEEecCCCCceeeeeecCCCc-----EeeEEecC----------------------------CcceEeecCCc
Confidence            66  6666655  456788999988775     22221110                            01111111123


Q ss_pred             eEEEecCCCcEEEEEcCCceeeeec------cccCcceEEEEE--eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeec
Q 018591          140 LIYSGSWDKTLKVWRVADLKCLESI------KAHDDAVNGLVA--SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEG  211 (353)
Q Consensus       140 ~l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~~v~~i~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  211 (353)
                      ..++.+.|+...++..........+      ..+...+....+  .+..++.++.++.+++|++..+....   ......
T Consensus       160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~  236 (355)
T d2bbkh_         160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF---LPAVEA  236 (355)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE---CCCEES
T ss_pred             ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE---EeccCC
Confidence            3334444555544443322211111      122333444455  44588888999999999998775211   111111


Q ss_pred             c----------CCceeeEEEEcCCCCeEEeecCC----------CcEEEeeccccccceeeeeecc-ccceeEEEEEEcC
Q 018591          212 H----------KDVSLNSVVVSDDGKWVYGGGSD----------GFVMGWEGNVEIVRWKLACETK-AHEMAVLCVCLVG  270 (353)
Q Consensus       212 ~----------~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~  270 (353)
                      +          .... ..+++++++..++....+          ..|.+||..+++.    ...+. ++...-..++++|
T Consensus       237 ~~~~~~~~~~~p~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~----~~~~~~~~~~~~~a~spDG  311 (355)
T d2bbkh_         237 LTEAERADGWRPGGW-QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFEMGHEIDSINVSQDE  311 (355)
T ss_dssp             SCHHHHHTTEEECSS-SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEEEEEEECEEEECCSS
T ss_pred             cccceEeeeeeccce-EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE----EEEecCCCCEEEEEEcCCC
Confidence            1          1111 468899999888765433          4699999998743    22222 2222334556677


Q ss_pred             c--EEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeec
Q 018591          271 E--FLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASP  313 (353)
Q Consensus       271 ~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~  313 (353)
                      +  ++++++.|+.|++||.++++   .+.++.++......+.+.+
T Consensus       312 ~~~l~v~~~~d~~i~v~D~~tg~---~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         312 KPLLYALSTGDKTLYIHDAESGE---ELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             SCEEEEEETTTTEEEEEETTTCC---EEEEECCCCSSCCEEECCC
T ss_pred             CeEEEEEECCCCEEEEEECCCCC---EEEEEeCcCCCccEEEeCC
Confidence            6  45677889999999999988   5666666655555555544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=5.4e-15  Score=120.29  Aligned_cols=276  Identities=9%  Similarity=-0.039  Sum_probs=167.8

Q ss_pred             EeCCCc--EEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe----------cCCCcEEEEEcccCccceeEEeecc
Q 018591           32 ASQGKD--IIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA----------HQDSRIRVWKVSRSSENVFRLVDTL   97 (353)
Q Consensus        32 ~~~dg~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~----------~~dg~i~~w~~~~~~~~~~~~~~~~   97 (353)
                      +..+|.  |.+||..+++.+..+..+....  +.++  ++.+++.          +.|+.|++||..+.+.     ...+
T Consensus        40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~--~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~-----~~~i  112 (368)
T d1mdah_          40 AYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-----IADI  112 (368)
T ss_dssp             TTTCSSEEEEEEETTTTEEEEEEEECTTCE--EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-----EEEE
T ss_pred             ccCCCcceEEEEeCCCCcEEEEEeCCCCCc--ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE-----eeee
Confidence            344444  6677999999998887665543  4555  7777754          3577899999988762     2221


Q ss_pred             ccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCCceeeeeccccCcceEEE
Q 018591           98 PTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVADLKCLESIKAHDDAVNGL  174 (353)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~i  174 (353)
                      +....                  ...  ........++|+|  ++++++. .++.+.+||+.+++.+..+..+..... .
T Consensus       113 ~~p~~------------------~~~--~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~  171 (368)
T d1mdah_         113 ELPDA------------------PRF--SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-H  171 (368)
T ss_dssp             EETTS------------------CSC--CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-E
T ss_pred             cCCcc------------------cee--cccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-c
Confidence            11000                  000  0111223578888  5666554 679999999999999888766543321 1


Q ss_pred             EEeCCeEEEEcCCCcEEEEeCCCCCcccccce-eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeee
Q 018591          175 VASKGIVYSASADGKIKAWGKELGKSHCHSLK-GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLA  253 (353)
Q Consensus       175 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  253 (353)
                      ...+..+++.+.||.+.+++............ .....+.... ....+.+++..+.+.  .+.+.+++...+.......
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS-QAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS-CCEEETTTTEEEECB--SSCCEEEECCSSCCEEECC
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccce-eecccccCcEEEEec--CCCEEEEeecCCceEEEee
Confidence            12455778888999999998876652111111 1112222222 567777777666554  3445555554432111110


Q ss_pred             e----------eccccceeEEEEEEcCcEEEEecC---------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          254 C----------ETKAHEMAVLCVCLVGEFLCSGSA---------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       254 ~----------~~~~~~~~v~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .          ...........+++++..++....         ...|.+||..+++   .+..+. +...+.+++|+||
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~-~~~~~~~~a~spD  324 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPIS-NGHDSDAIIAAQD  324 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECCE-EEEEECEEEECCS
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---EeEEec-CCCceeEEEECCC
Confidence            0          011112234566777665554322         2469999999987   444443 3457899999999


Q ss_pred             CCCCCe--EEEEccCCCeEEEEEcCCCCCccccc
Q 018591          315 AVGGGF--LLYSGSLDKSLRVWWVSKQSSTSDSE  346 (353)
Q Consensus       315 ~~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~  346 (353)
                          |+  +++++..|+.|++||..+++.+.+.+
T Consensus       325 ----G~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         325 ----GASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             ----SSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             ----CCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence                75  45777889999999999999887765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.8e-12  Score=102.31  Aligned_cols=243  Identities=10%  Similarity=0.135  Sum_probs=148.0

Q ss_pred             CccCceEEEEEC--CcEEEEE-eCCCcEEEEeCCCceeeEEe---ccCceeeEEEEEe--CCEEEEecC-CCcEEEEEcc
Q 018591           14 GHVGSVSSLALC--GEFILSA-SQGKDIIVWQQPDLRMFTKF---GHGDGSVKAVVTV--GNKVFTAHQ-DSRIRVWKVS   84 (353)
Q Consensus        14 ~h~~~v~~~~~~--~~~l~s~-~~dg~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~s~~~-dg~i~~w~~~   84 (353)
                      .|.+.|..|+|+  |++|+++ ..|+.|++|++........+   ..+...+..++++  +++|++++. ++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            578999999996  8888554 45899999998765433222   2233456678887  788888764 6789999987


Q ss_pred             cCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEec-CCCcEEEEEcCCceee
Q 018591           85 RSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGS-WDKTLKVWRVADLKCL  161 (353)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~~~~~  161 (353)
                      .........                              ...+...+.++.+++  +.+++++ .+..|.+|+.......
T Consensus       114 ~~~~~~~~~------------------------------~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_         114 DGLPVGVVD------------------------------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             TTEEEEEEE------------------------------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             cccceeccc------------------------------ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            654211111                              114556677788888  5555544 5567999998654322


Q ss_pred             ee------ccccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccceeeee------ccCCceeeEEEEcCCC
Q 018591          162 ES------IKAHDDAVNGLVASKG---IVYSASADGKIKAWGKELGKSHCHSLKGILE------GHKDVSLNSVVVSDDG  226 (353)
Q Consensus       162 ~~------~~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~  226 (353)
                      ..      ..........+++.++   .+.+....+...+|+......... ......      .....+ ..+++++++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~s~d~  241 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE-CVQTLDMMPENFSDTRWA-ADIHITPDG  241 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE-EEEEEECSCTTCCSCCCE-EEEEECTTS
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee-eeeeeeeeecCCCccccc-eeEEEeccc
Confidence            11      1123455678888333   344555677788888654431111 111111      112223 678899999


Q ss_pred             CeEEe-ecCCCcEEEeeccccccceeeeeeccc-cceeEEEEEEcCcEEEEec-CCCeEEEEecC
Q 018591          227 KWVYG-GGSDGFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGEFLCSGS-ADKSIGIWKRE  288 (353)
Q Consensus       227 ~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~  288 (353)
                      ++++. +..++.+.+|++............... ....-.+++++|++|++++ .++.|++|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            86655 566788999998765433332222211 1222356777899877654 56899999654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.54  E-value=1.4e-11  Score=99.87  Aligned_cols=203  Identities=8%  Similarity=-0.018  Sum_probs=122.2

Q ss_pred             eeCccCceEEEEEC--CcEEEEE-----eCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEec---------
Q 018591           12 LSGHVGSVSSLALC--GEFILSA-----SQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAH---------   73 (353)
Q Consensus        12 l~~h~~~v~~~~~~--~~~l~s~-----~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~---------   73 (353)
                      ..+|..++.+++++  |+.++..     +.++.|.+||..+++.+..+..+...  .+.|+  |++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            44688899999996  7777654     23467999999999999998776554  45565  88887764         


Q ss_pred             -CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE--EEecCCC
Q 018591           74 -QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI--YSGSWDK  148 (353)
Q Consensus        74 -~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l--~~~~~dg  148 (353)
                       .++.|.+||..+++.     ...+.......                 .   .-......+.|++  ..+  .....++
T Consensus        94 ~~~~~v~v~D~~t~~~-----~~~~~~~~~~~-----------------~---~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          94 KRTDYVEVFDPVTFLP-----IADIELPDAPR-----------------F---DVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             ccceEEEEEECCCCcE-----EEEEecCCcce-----------------e---EeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence             467899999998762     22211100000                 0   0000112344544  333  3334556


Q ss_pred             cEEEEEcCCceeeeeccccCcceEEEEEe-CC--eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCC
Q 018591          149 TLKVWRVADLKCLESIKAHDDAVNGLVAS-KG--IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDD  225 (353)
Q Consensus       149 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (353)
                      .+.+|+....+.....    ....++.+. ++  .+++.+.|+.+.+|+...........................+.++
T Consensus       149 ~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         149 AVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             ceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence            7888887776655443    234556662 22  6788999999999999887621111111111111112245566666


Q ss_pred             CCeEEeecCCCcEEEeecccc
Q 018591          226 GKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       226 ~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      +.+ +..+.++.+.+|+....
T Consensus       225 ~~~-~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         225 GRI-VWPVYSGKILQADISAA  244 (373)
T ss_pred             ceE-EEecCCceEEEEEcCCC
Confidence            644 45567888999998876

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=2.8e-12  Score=104.02  Aligned_cols=256  Identities=10%  Similarity=-0.035  Sum_probs=148.5

Q ss_pred             CCCCCceeeeeeCccCceEEEEE--CCcEEEEEe----------CCCcEEEEeCCCceeeEEeccCce-------eeEEE
Q 018591            2 PCKSHRSLAVLSGHVGSVSSLAL--CGEFILSAS----------QGKDIIVWQQPDLRMFTKFGHGDG-------SVKAV   62 (353)
Q Consensus         2 ~~~~~~~~~~l~~h~~~v~~~~~--~~~~l~s~~----------~dg~v~vwd~~~~~~~~~~~~~~~-------~v~~~   62 (353)
                      ...+++++.++.+|..+.  ++|  +|+.|++++          .|+.|++||..+++.+..+..+..       ....+
T Consensus        52 d~~~~~~~~~~~~~~~~~--~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~  129 (368)
T d1mdah_          52 CAGCGVTLGHSLGAFLSL--AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII  129 (368)
T ss_dssp             ETTTTEEEEEEEECTTCE--EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred             eCCCCcEEEEEeCCCCCc--ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccce
Confidence            345777788888777663  566  488777654          477899999999999888754322       12346


Q ss_pred             EEe--CCEEEEec-CCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCC
Q 018591           63 VTV--GNKVFTAH-QDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNG  139 (353)
Q Consensus        63 ~~~--~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  139 (353)
                      +|+  +++++.+. .++.+.+||+.+++     ....++.                           +.... .....+.
T Consensus       130 a~SpDGk~l~va~~~~~~v~~~d~~~~~-----~~~~~~~---------------------------~~~~~-~~~~~~~  176 (368)
T d1mdah_         130 GNCASSACLLFFLFGSSAAAGLSVPGAS-----DDQLTKS---------------------------ASCFH-IHPGAAA  176 (368)
T ss_dssp             EECTTSSCEEEEECSSSCEEEEEETTTE-----EEEEEEC---------------------------SSCCC-CEEEETT
T ss_pred             EECCCCCEEEEEeCCCCeEEEEECCCCc-----EeEEeec---------------------------cCcce-EccCCCc
Confidence            666  77777665 67999999998876     2222111                           11110 0111226


Q ss_pred             eEEEecCCCcEEEEEcCCceeeee------ccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCccccccee-----e
Q 018591          140 LIYSGSWDKTLKVWRVADLKCLES------IKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKG-----I  208 (353)
Q Consensus       140 ~l~~~~~dg~v~iwd~~~~~~~~~------~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~  208 (353)
                      .++..+.||.+.++++........      +..+...+....+.....+.....+.+.+++.............     .
T Consensus       177 ~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             eEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccccccee
Confidence            677788899999998865433221      12233344445553332233334456666666544311000000     0


Q ss_pred             e-e-ccCCceeeEEEEcCCCCeEEeecCC---------CcEEEeeccccccceeeeeeccc-cceeEEEEEEcCc--EEE
Q 018591          209 L-E-GHKDVSLNSVVVSDDGKWVYGGGSD---------GFVMGWEGNVEIVRWKLACETKA-HEMAVLCVCLVGE--FLC  274 (353)
Q Consensus       209 ~-~-~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~  274 (353)
                      . . ...... ..++++|++..++....+         ..|.+||..+++    ....+.. +...-..++++|+  +++
T Consensus       257 ~~~~~~~~g~-~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~----~~~~~~~~~~~~~~a~spDG~~~ly~  331 (368)
T d1mdah_         257 KADNFRSAGF-QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPISNGHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             HHTTEEECSS-SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCEEEEEECEEEECCSSSCEEEE
T ss_pred             eeeeecCCCc-eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc----EeEEecCCCceeEEEECCCCCEEEEE
Confidence            0 0 001112 468889998877654322         358899999884    2222222 2222345666776  356


Q ss_pred             EecCCCeEEEEecCCCcceEEecccc
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAIT  300 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~  300 (353)
                      ++..++.|++||..+++   .+..+.
T Consensus       332 s~~~~~~v~v~D~~tgk---~~~~i~  354 (368)
T d1mdah_         332 NSAGTEVLDIYDAASDQ---DQSSVE  354 (368)
T ss_dssp             EETTTTEEEEEESSSCE---EEEECC
T ss_pred             EeCCCCeEEEEECCCCC---EEEEEE
Confidence            77889999999999988   444444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=5.3e-12  Score=102.16  Aligned_cols=259  Identities=12%  Similarity=0.070  Sum_probs=148.9

Q ss_pred             EEEEEeCCCcEEEEeCCCceeeEEecc------------------------------CceeeEEE--EEeCCEEEEe-cC
Q 018591           28 FILSASQGKDIIVWQQPDLRMFTKFGH------------------------------GDGSVKAV--VTVGNKVFTA-HQ   74 (353)
Q Consensus        28 ~l~s~~~dg~v~vwd~~~~~~~~~~~~------------------------------~~~~v~~~--~~~~~~l~s~-~~   74 (353)
                      .++||+.+|+|++|++.+++.++.+..                              |.......  .++|++|+.. ..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            367888999999999999998888632                              11112222  3457777554 57


Q ss_pred             CCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--C--eEEEecCCC--
Q 018591           75 DSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--G--LIYSGSWDK--  148 (353)
Q Consensus        75 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~l~~~~~dg--  148 (353)
                      +++|.++|+++.+.....   .+                            .+......++|++  +  +++..+.+.  
T Consensus        93 ~~rVavIDl~t~k~~~ii---~i----------------------------P~g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKIT---HI----------------------------PNVQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             TTEEEEEETTTTEEEEEE---EC----------------------------TTCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             CCEEEEEECCCCcEeeEE---ec----------------------------CCCCCccceEEeccCCEEEEEeccCCccc
Confidence            789999999887622111   12                            2334455566654  1  333222221  


Q ss_pred             ---------------cEEEEEcCCceeeeeccccCcceEEEEEeC--CeEEEEc--------------------------
Q 018591          149 ---------------TLKVWRVADLKCLESIKAHDDAVNGLVASK--GIVYSAS--------------------------  185 (353)
Q Consensus       149 ---------------~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~l~~~~--------------------------  185 (353)
                                     .+..+|..+.+...++... .....+.+++  .++++++                          
T Consensus       142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p  220 (441)
T d1qnia2         142 QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE  220 (441)
T ss_dssp             SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred             ccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence                           1234565555555444322 2334444411  1333332                          


Q ss_pred             ---------------CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEE-eecCCCcEEEeeccccccc
Q 018591          186 ---------------ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVY-GGGSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       186 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~  249 (353)
                                     .++.+.+++....+     ....+..... + ..+.++|||++++ ++..+++|.+||+.+....
T Consensus       221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~-----v~~~IPvgks-P-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         221 RIAAAVKAGNFKTIGDSKVPVVDGRGESE-----FTRYIPVPKN-P-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             HHHHHHHTTCCBCCTTCCCCEEECSSSCS-----SEEEECCBSS-C-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             ceEEEecCCCEEEeCCCCcEEEEcccCCc-----eEEEEeCCCC-c-cCceECCCCCEEEEeCCcCCcEEEEEeehhhhH
Confidence                           23444555444433     3444444333 4 7899999999875 5678999999998763211


Q ss_pred             --------eeeeeeccccce-eEEEEEEcCcEEEEecCCCeEEEEecCCC------cce------EEeccccCCCcCeEE
Q 018591          250 --------WKLACETKAHEM-AVLCVCLVGEFLCSGSADKSIGIWKREAF------GKL------CRVGAITGHEGPVKC  308 (353)
Q Consensus       250 --------~~~~~~~~~~~~-~v~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~------~~~~~~~~h~~~v~~  308 (353)
                              .....+.....+ .-+.+...|+.+.+.+.|..|..|++...      +..      ..++...+|...+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~  373 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLT  373 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTT
T ss_pred             hhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccc
Confidence                    011111111111 11334444778888899999999997421      111      112223578888888


Q ss_pred             EEeecCCCCCCeEEEEc---cCCC
Q 018591          309 LQASPNAVGGGFLLYSG---SLDK  329 (353)
Q Consensus       309 ~~~~~~~~~~~~~l~s~---~~dg  329 (353)
                      .+++||    |++|+++   |.|.
T Consensus       374 ~t~~pd----Gk~l~s~~k~s~dr  393 (441)
T d1qnia2         374 ESRDAD----GKWLVVLSKFSKDR  393 (441)
T ss_dssp             TSTTCC----CCEEEEEESCCGGG
T ss_pred             cccCCC----CcEEEecCcccccc
Confidence            899999    9999999   6664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.40  E-value=3.2e-11  Score=101.01  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             CCCceeeee-----eCccCceEEEEEC--CcEEEEEeC---------CCcEEEEeCCCceeeEEeccCceeeEEEEEe--
Q 018591            4 KSHRSLAVL-----SGHVGSVSSLALC--GEFILSASQ---------GKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--   65 (353)
Q Consensus         4 ~~~~~~~~l-----~~h~~~v~~~~~~--~~~l~s~~~---------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--   65 (353)
                      .+++....+     ..|...|.++.|+  |++|+.++.         ++.+.+||+.+++.. .+..+...+....|+  
T Consensus        44 ~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~~~~~~~~~~SPD  122 (470)
T d2bgra1          44 EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPV  122 (470)
T ss_dssp             TTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSS
T ss_pred             CCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccccCCccccccccccC
Confidence            455554434     4456789999996  888888753         578899999988754 577778889999998  


Q ss_pred             CCEEEEecCCCcEEEEEcccCc
Q 018591           66 GNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        66 ~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      |+.++... ++.+.+|+..++.
T Consensus       123 G~~ia~~~-~~~l~~~~~~~g~  143 (470)
T d2bgra1         123 GHKLAYVW-NNDIYVKIEPNLP  143 (470)
T ss_dssp             TTCEEEEE-TTEEEEESSTTSC
T ss_pred             cceeeEee-cccceEEECCCCc
Confidence            78888754 5689999988776

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.23  E-value=7.4e-10  Score=89.50  Aligned_cols=249  Identities=11%  Similarity=0.020  Sum_probs=137.6

Q ss_pred             EEEecCCCcEEEEEcccCccceeEEeeccccccce---eeeecccceeEeecccceeeeeecCCceEEEEEeC--CeE-E
Q 018591           69 VFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDY---LGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLI-Y  142 (353)
Q Consensus        69 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l-~  142 (353)
                      +++++.+|+|++|++.+.+     .+..++.-...   ...+......+.........-..|..........+  ++| +
T Consensus        14 f~Sgg~sG~V~V~dlpS~r-----~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV   88 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMR-----ELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFI   88 (441)
T ss_dssp             EEECBTTCCEEEEEETTTE-----EEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCc-----EEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEE
Confidence            6688899999999998776     33333221000   00000000000000000011123444455544444  555 5


Q ss_pred             EecCCCcEEEEEcCCceeeeecc-ccCcceEEEEEeC-C--eEEEEcCCCcE------------------EEEeCCCCCc
Q 018591          143 SGSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVASK-G--IVYSASADGKI------------------KAWGKELGKS  200 (353)
Q Consensus       143 ~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~-~--~l~~~~~dg~i------------------~iwd~~~~~~  200 (353)
                      +...++.|.++|+++++....+. .+...+..+++.+ +  ..+++..+..+                  ..+|..+.+ 
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~-  167 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD-  167 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS-
T ss_pred             EcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce-
Confidence            55678899999999998887664 3467788899943 3  23333333333                  446666554 


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC-----------------------------------------cEE
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG-----------------------------------------FVM  239 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~  239 (353)
                          ......... .+ ..+.++|+|+++++.+.+.                                         .+.
T Consensus       168 ----v~~qI~v~~-~p-~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~v  241 (441)
T d1qnia2         168 ----VAWQVIVDG-NL-DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPV  241 (441)
T ss_dssp             ----EEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred             ----eeEEEecCC-Cc-cceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEE
Confidence                333333222 23 7899999999988776542                                         222


Q ss_pred             Eeeccccccceeeeeeccc-cceeEEEEEEcCcEE-EEecCCCeEEEEecCCCcce-----EEeccccCCC---cCeEEE
Q 018591          240 GWEGNVEIVRWKLACETKA-HEMAVLCVCLVGEFL-CSGSADKSIGIWKREAFGKL-----CRVGAITGHE---GPVKCL  309 (353)
Q Consensus       240 i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~h~---~~v~~~  309 (353)
                      +++....    ........ ....-..++++|+++ +++..+++|.+||++..+..     .....+.++.   -.....
T Consensus       242 vd~~~~~----~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~  317 (441)
T d1qnia2         242 VDGRGES----EFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHT  317 (441)
T ss_dssp             EECSSSC----SSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEE
T ss_pred             EEcccCC----ceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccc
Confidence            2222221    11111111 112236777888876 55778999999998753310     0001111111   123456


Q ss_pred             EeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          310 QASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       310 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      +|+++    |..+.+...|..|..|++.
T Consensus       318 ~fd~~----g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         318 TFDGR----GNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECSS----SEEEEEETTTTEEEEEEHH
T ss_pred             eecCC----ceEEEcccccceEEEeccc
Confidence            89998    9999999999999999985

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.16  E-value=2.8e-07  Score=71.71  Aligned_cols=207  Identities=14%  Similarity=0.069  Sum_probs=134.5

Q ss_pred             CCCceeeeeeCccCceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            4 KSHRSLAVLSGHVGSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         4 ~~~~~~~~l~~h~~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      ...+.+..+...+ .+..++++  |+++++...+++|..|+.. ++.. .+......+.+++++  ++.+++...++.+.
T Consensus        16 ~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~   92 (302)
T d2p4oa1          16 APAKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIP   92 (302)
T ss_dssp             CCEEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEE
Confidence            3445566665433 47889995  8999999999999999854 4332 344445678899997  77788887888888


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      .|+........... ...                            ......+.+.+.+  +++++-+.++.+..+|...
T Consensus        93 ~~~~~~~~~~~~~~-~~~----------------------------~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~  143 (302)
T d2p4oa1          93 VVSLVKSDGTVETL-LTL----------------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ  143 (302)
T ss_dssp             EEEEECTTSCEEEE-EEC----------------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEecccccceeec-ccc----------------------------CCccccceeEEccCCCEEeeccccccceeeeccC
Confidence            88876544222111 111                            2334567788877  5556667778888888776


Q ss_pred             ceeeeec----------cccCcceEEEEEeCC-eEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC
Q 018591          158 LKCLESI----------KAHDDAVNGLVASKG-IVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG  226 (353)
Q Consensus       158 ~~~~~~~----------~~~~~~v~~i~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (353)
                      +......          .........+.+.++ .+++.+..+.|..++........  ..... .....+ ..++++++|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~--~~~~~-~~~~~p-dgia~d~dG  219 (302)
T d2p4oa1         144 PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIF-VEQTNI-DDFAFDVEG  219 (302)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEE-EESCCC-SSEEEBTTC
T ss_pred             CcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccccccccc--ccccc-cCCCCC-cceEECCCC
Confidence            5432211          111234566777555 66677788889988887654111  11111 112233 789999999


Q ss_pred             CeEEeecCCCcEEEeecccc
Q 018591          227 KWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       227 ~~l~~~~~dg~i~i~d~~~~  246 (353)
                      ++.++...++.|..++....
T Consensus       220 ~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         220 NLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             CEEEECBTTCCEEEECTTCC
T ss_pred             CEEEEEcCCCcEEEECCCCC
Confidence            98888888999999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=2e-07  Score=70.82  Aligned_cols=240  Identities=8%  Similarity=-0.019  Sum_probs=127.6

Q ss_pred             ceeeeeeCccCc--eEEEEEC--CcEEEE-EeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEE
Q 018591            7 RSLAVLSGHVGS--VSSLALC--GEFILS-ASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIR   79 (353)
Q Consensus         7 ~~~~~l~~h~~~--v~~~~~~--~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~   79 (353)
                      |.+..+.|+...  -..|+++  |+..++ .+..+.+..++...................++++  +..+++....+.++
T Consensus         2 ~~~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~   81 (260)
T d1rwia_           2 QTVLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVT   81 (260)
T ss_dssp             EEECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEE
T ss_pred             CeEEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceee
Confidence            444555565433  4789996  665554 4555777777754433222211112234556665  55555555554554


Q ss_pred             EEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCC
Q 018591           80 VWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVAD  157 (353)
Q Consensus        80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~  157 (353)
                      +++-....     .+...                            .......++++.+  +++++-..+..+..++...
T Consensus        82 ~~~~~~~~-----~~~~~----------------------------~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~  128 (260)
T d1rwia_          82 LAAGSNNQ-----TVLPF----------------------------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS  128 (260)
T ss_dssp             ECTTCSCC-----EECCC----------------------------CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred             eeeeccce-----eeeee----------------------------eeeeecccccccccceeEeecccccccccccccc
Confidence            44322221     11100                            1223456788877  4555545556677776544


Q ss_pred             ceeeeeccccCcceEEEEE-eC-CeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC
Q 018591          158 LKCLESIKAHDDAVNGLVA-SK-GIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD  235 (353)
Q Consensus       158 ~~~~~~~~~~~~~v~~i~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  235 (353)
                      ...............++++ +. +.+++...++.|..+|.....     ...........+ ..+++.++++++++....
T Consensus       129 ~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~p-~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         129 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-----QVVLPFTDITAP-WGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-----EEECCCSSCCSE-EEEEECTTCCEEEEETTT
T ss_pred             ceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce-----eeeeeccccCCC-ccceeeeeeeeeeeecCC
Confidence            3322211122334567888 33 366666778889999987654     222222333445 889999999988888888


Q ss_pred             CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEec
Q 018591          236 GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKR  287 (353)
Q Consensus       236 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~  287 (353)
                      +.|..++......  ............-.++..+|+++++-..++.|+.++.
T Consensus       203 ~~i~~~~~~~~~~--~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         203 NQVVKLLAGSTTS--TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TEEEEECTTCSCC--EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CEEEEEeCCCCeE--EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            8898888765421  1111111111222333445677666666666665553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.03  E-value=7.2e-07  Score=69.61  Aligned_cols=195  Identities=8%  Similarity=0.006  Sum_probs=113.9

Q ss_pred             eEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccC----cceEEEEE-eCCeEEEEcC----------------C
Q 018591          131 ISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHD----DAVNGLVA-SKGIVYSASA----------------D  187 (353)
Q Consensus       131 i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~i~~-~~~~l~~~~~----------------d  187 (353)
                      -..+.+.+  +.++++...+.|...|..............    ...+.+++ +++.++.+..                .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            45788887  567777777778888876543322111111    13567788 4444443322                2


Q ss_pred             CcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCC-----eEEeecCCCcEEEeeccccccce--eeeeecccc-
Q 018591          188 GKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGK-----WVYGGGSDGFVMGWEGNVEIVRW--KLACETKAH-  259 (353)
Q Consensus       188 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~-  259 (353)
                      |.|..++... +     .. .+......+ +.++|+|++.     +.++-+..+.|..|++.......  +....+... 
T Consensus       153 G~v~~~~~dg-~-----~~-~~~~~~~~p-NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         153 GSIYCFTTDG-Q-----MI-QVDTAFQFP-NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             EEEEEECTTS-C-----EE-EEEEEESSE-EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             ceEEEEeecC-c-----ee-EeeCCccee-eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence            2344444322 1     11 122222333 7899998764     45556778889999876432111  111122111 


Q ss_pred             ceeE--EEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCe-EEEEccCCCeEEEEEc
Q 018591          260 EMAV--LCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGF-LLYSGSLDKSLRVWWV  336 (353)
Q Consensus       260 ~~~v--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-~l~s~~~dg~i~iw~~  336 (353)
                      ....  .++..+|++.++....+.|.+||.+.++.   +..+.......++++|.|+    ++ ++++.+.+|.|...++
T Consensus       225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~---~~~i~~p~~~~t~~afg~d----~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP---KMRIRCPFEKPSNLHFKPQ----TKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC---SEEEECSSSCEEEEEECTT----SSEEEEEETTTTEEEEEEC
T ss_pred             cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE---EEEEECCCCCEEEEEEeCC----CCEEEEEECCCCcEEEEEC
Confidence            1122  34445588888877889999999887652   3333344567899999998    64 6677788898888887


Q ss_pred             CCCC
Q 018591          337 SKQS  340 (353)
Q Consensus       337 ~~~~  340 (353)
                      ....
T Consensus       298 ~~~G  301 (314)
T d1pjxa_         298 QRNG  301 (314)
T ss_dssp             SSCB
T ss_pred             CCCC
Confidence            6544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=2.8e-07  Score=70.04  Aligned_cols=187  Identities=6%  Similarity=-0.025  Sum_probs=111.8

Q ss_pred             eEEEEEeC--CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEE-eC-CeEEEEcCCCcEEEEeCCCCCcccccce
Q 018591          131 ISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SK-GIVYSASADGKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       131 i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~  206 (353)
                      ...+++++  ..+++....+.+++++..+...+..... .....++++ ++ +.+++-..+..+..++.....     ..
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~-----~~  132 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-----QT  132 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS-----CE
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccce-----ee
Confidence            34567776  4444555555555555444444433332 345678888 33 355555556667777765543     11


Q ss_pred             eeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEE--EEcCcEEEEecCCCeEEE
Q 018591          207 GILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCV--CLVGEFLCSGSADKSIGI  284 (353)
Q Consensus       207 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~dg~i~i  284 (353)
                      .........+ ..++++++++.+++...++.|..++.......   . ...........+  .++|+++++...++.|..
T Consensus       133 ~~~~~~~~~p-~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~---~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~  207 (260)
T d1rwia_         133 VLPFTGLNDP-DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV---V-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK  207 (260)
T ss_dssp             ECCCCSCCSC-CEEEECTTCCEEEEEGGGTEEEEECTTTCCEE---E-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             eeeecccCCc-ceeeecCCCCEeeeccccccccccccccceee---e-eeccccCCCccceeeeeeeeeeeecCCCEEEE
Confidence            1111222334 78999999998888888889999998765211   1 111112223344  445888888888899998


Q ss_pred             EecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEE
Q 018591          285 WKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWW  335 (353)
Q Consensus       285 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~  335 (353)
                      ++......  .+.. ...-.....|+++++    +.++++-..+++|+..+
T Consensus       208 ~~~~~~~~--~~~~-~~~~~~P~~i~~d~~----g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         208 LLAGSTTS--TVLP-FTGLNTPLAVAVDSD----RTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             ECTTCSCC--EECC-CCSCCCEEEEEECTT----CCEEEEEGGGTEEEEEC
T ss_pred             EeCCCCeE--EEEc-cCCCCCeEEEEEeCC----CCEEEEECCCCEEEEEe
Confidence            88765431  1211 122345789999998    88888877777666544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.00  E-value=2.8e-06  Score=67.79  Aligned_cols=167  Identities=12%  Similarity=0.104  Sum_probs=95.6

Q ss_pred             cceEEEEEeC-C-eEEEEc-CCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEe-ecCCCcEEEeecc
Q 018591          169 DAVNGLVASK-G-IVYSAS-ADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYG-GGSDGFVMGWEGN  244 (353)
Q Consensus       169 ~~v~~i~~~~-~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~  244 (353)
                      ..+.++.+++ + +++++. ....|.+|+.....................+ ..++|+|+++++++ .-.++.|.+|+..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP-r~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP-RWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE-EEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce-EEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3577899943 3 455543 4567888876543311000001111223345 89999999998755 4467899999987


Q ss_pred             ccccceee-eeec--------------ccc--ceeEEEEEEcCcEEEEecC------CCeEEEEecCCCcceEEe---cc
Q 018591          245 VEIVRWKL-ACET--------------KAH--EMAVLCVCLVGEFLCSGSA------DKSIGIWKREAFGKLCRV---GA  298 (353)
Q Consensus       245 ~~~~~~~~-~~~~--------------~~~--~~~v~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~---~~  298 (353)
                      ........ ....              ..+  ......++++|++|+++..      .+.|..|++.........   ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            65322111 0000              011  1223566778998887642      234778887654432221   11


Q ss_pred             ccCCCcCeEEEEeec-CCCCCCeEEEEc-cCCCeEEEEEcCCCC
Q 018591          299 ITGHEGPVKCLQASP-NAVGGGFLLYSG-SLDKSLRVWWVSKQS  340 (353)
Q Consensus       299 ~~~h~~~v~~~~~~~-~~~~~~~~l~s~-~~dg~i~iw~~~~~~  340 (353)
                      .........+++++| +    |++|+++ ..++.|.+|++....
T Consensus       304 ~~~~G~~p~~i~~~p~~----G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWS----DEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             CSSCCTTCCCEEECTTC----TTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEcCCCCccEEEecCCC----CCEEEEEeCCCCeEEEEEEeCCc
Confidence            122334567899998 5    7766555 577999999886553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=1.7e-06  Score=66.32  Aligned_cols=180  Identities=11%  Similarity=0.117  Sum_probs=109.7

Q ss_pred             ecCCCcEEEEEcCCceeeeecc-ccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeee--eccCCceee
Q 018591          144 GSWDKTLKVWRVADLKCLESIK-AHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGIL--EGHKDVSLN  218 (353)
Q Consensus       144 ~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~  218 (353)
                      .+.++.|..++. .++....+. ........+++ ..+ .+++....+.+.+++....      ....+  ..+...+ .
T Consensus        89 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~------~~~~~g~~~~~~~~-~  160 (279)
T d1q7fa_          89 RSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN------VLHKFGCSKHLEFP-N  160 (279)
T ss_dssp             CGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC------EEEEEECTTTCSSE-E
T ss_pred             cCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc------eeeccccccccccc-c
Confidence            345566777774 455555543 23445667777 333 5556566677888876543      22322  2233444 7


Q ss_pred             EEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEE--EEEEcCcEEEEec-CCCeEEEEecCCCcceEE
Q 018591          219 SVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVL--CVCLVGEFLCSGS-ADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       219 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~  295 (353)
                      .+++.++++.+++....+.|++||.... .....  ...+......  ++.++|+++++-. .++.|.+|+.. ++....
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~-~~~~~--g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~  236 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQI--GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISA  236 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEE--SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEE
T ss_pred             eeeeccceeEEeeeccccceeeeecCCc-eeeee--cccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEE
Confidence            8999999998888888999999997654 11111  1112222233  4555688777654 45579999854 442222


Q ss_pred             eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCC
Q 018591          296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSS  341 (353)
Q Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~  341 (353)
                      +.. .........|++.|+    |.++++ +.++.|++|+.....+
T Consensus       237 ~~~-~~~~~~p~~vav~~d----G~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         237 LES-KVKHAQCFDVALMDD----GSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEE-SSCCSCEEEEEEETT----TEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EeC-CCCCCCEeEEEEeCC----CcEEEE-eCCCeEEEEEeeeecC
Confidence            211 222345789999999    876655 5789999999887643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.92  E-value=2.1e-06  Score=66.60  Aligned_cols=239  Identities=10%  Similarity=0.018  Sum_probs=138.7

Q ss_pred             CceeeEEeccCceeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeeccccee
Q 018591           45 DLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKR  122 (353)
Q Consensus        45 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (353)
                      ..+.+..+... ..+..+++.  |+++++...+++|..|+.+...                                  .
T Consensus        17 ~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~----------------------------------~   61 (302)
T d2p4oa1          17 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ----------------------------------Q   61 (302)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE----------------------------------E
T ss_pred             cccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE----------------------------------E
Confidence            34455555432 256777887  7888888888888777755332                                  1


Q ss_pred             eeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCcee-eeec--cccCcceEEEEE-eCC-eEEEEcCCCcEEEEeC
Q 018591          123 LWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKC-LESI--KAHDDAVNGLVA-SKG-IVYSASADGKIKAWGK  195 (353)
Q Consensus       123 ~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~-~~~~--~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~  195 (353)
                      .+......+.++++.+  +++++...++.+..++...... ...+  .......+.+++ .++ .+++.+.++.+..+|.
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~  141 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV  141 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeec
Confidence            1114556788999998  7777777788888887654221 1111  123456788888 444 5666677888888887


Q ss_pred             CCCCcccccc-----eeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcC
Q 018591          196 ELGKSHCHSL-----KGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVG  270 (353)
Q Consensus       196 ~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~  270 (353)
                      ..+.......     .......... ...+.+.. +..+++.+..+.|..++....................-.++..+|
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~-~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG  219 (302)
T d2p4oa1         142 VQPSGSIWLEHPMLARSNSESVFPA-ANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG  219 (302)
T ss_dssp             TTTEEEEEEECGGGSCSSTTCCSCS-EEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC
T ss_pred             cCCcceeEecCCccceeeccCcccc-cccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC
Confidence            7664110000     0000111112 25566654 345566677888888887664322111111112222235666678


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEe---ecCCCCCCeEEEEcc
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQA---SPNAVGGGFLLYSGS  326 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~~~~~~l~s~~  326 (353)
                      ++.++...++.|..++....  ...+......-...++++|   .+|    ++.|+.++
T Consensus       220 ~l~va~~~~~~V~~i~p~G~--~~~~~~~~~~~~~pt~vafg~~~~D----~~~Lyvtt  272 (302)
T d2p4oa1         220 NLYGATHIYNSVVRIAPDRS--TTIIAQAEQGVIGSTAVAFGQTEGD----CTAIYVVT  272 (302)
T ss_dssp             CEEEECBTTCCEEEECTTCC--EEEEECGGGTCTTEEEEEECCSTTT----TTEEEEEE
T ss_pred             CEEEEEcCCCcEEEECCCCC--EEEEEecCCCCCCceEEEEcCCCCC----CCEEEEEC
Confidence            88888888899999987642  2233333334456899999   455    66665543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.86  E-value=7.1e-09  Score=86.52  Aligned_cols=152  Identities=14%  Similarity=0.057  Sum_probs=97.1

Q ss_pred             EEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecC---------CCcEEEee
Q 018591          173 GLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS---------DGFVMGWE  242 (353)
Q Consensus       173 ~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d  242 (353)
                      .+.| +++.++. ..++.+.+||+.+++.........+..+... +.++.||||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHS-INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSC-CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCc-cceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4556 4554444 3578899999999873211111223333344 489999999999988743         56789999


Q ss_pred             ccccccceeeeeeccccce--eEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEeccc------c---------CCCcC
Q 018591          243 GNVEIVRWKLACETKAHEM--AVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVGAI------T---------GHEGP  305 (353)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~---------~h~~~  305 (353)
                      +.++.    . ..+..+..  ....++|+|+.+|.. .++.+++|+..+++........      .         ...+.
T Consensus        99 ~~~~~----~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          99 LNKRQ----L-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             TTTTE----E-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             CCCCc----c-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            99873    2 22333333  345566779998885 5678999999887643222110      0         02234


Q ss_pred             eEEEEeecCCCCCCeEEEEccCCCe-EEEEEc
Q 018591          306 VKCLQASPNAVGGGFLLYSGSLDKS-LRVWWV  336 (353)
Q Consensus       306 v~~~~~~~~~~~~~~~l~s~~~dg~-i~iw~~  336 (353)
                      ...+.||||    |++|+....|.+ +..|.+
T Consensus       173 ~~~~~wSPD----Gk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         173 YSALWWSPN----GTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             SBCEEECTT----SSEEEEEEEECTTCCEEEE
T ss_pred             ccccEECCC----CCccceeEecCCcCceEEE
Confidence            567889999    999999876543 555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=7.1e-06  Score=62.73  Aligned_cols=230  Identities=16%  Similarity=0.174  Sum_probs=135.9

Q ss_pred             ceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccC------ceeeEEEEEe---CCEEEE-ecCCCcEEEEEccc
Q 018591           18 SVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHG------DGSVKAVVTV---GNKVFT-AHQDSRIRVWKVSR   85 (353)
Q Consensus        18 ~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~---~~~l~s-~~~dg~i~~w~~~~   85 (353)
                      .-..|+++  |+++++-..++.|++||. +++.+..+...      ...-..+++.   +..+++ .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            46788985  777777777889999995 57777666321      1122334433   333333 33444555555432


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEecCCCcEEEEEcCCceeeee
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSGSWDKTLKVWRVADLKCLES  163 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~  163 (353)
                      ..      ...+..                          ........+++.+  ..+++....+.+.+++. +++.+..
T Consensus       103 ~~------~~~~~~--------------------------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~  149 (279)
T d1q7fa_         103 QF------VRKFGA--------------------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHK  149 (279)
T ss_dssp             CE------EEEECT--------------------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred             cc------eeecCC--------------------------CcccccceeccccCCcEEEEeeccceeeEecc-CCceeec
Confidence            21      111100                          2334456777776  55566566677888875 4555555


Q ss_pred             c--cccCcceEEEEE-eCC-eEEEEcCCCcEEEEeCCCCCcccccceeee--eccCCceeeEEEEcCCCCeEEeecC-CC
Q 018591          164 I--KAHDDAVNGLVA-SKG-IVYSASADGKIKAWGKELGKSHCHSLKGIL--EGHKDVSLNSVVVSDDGKWVYGGGS-DG  236 (353)
Q Consensus       164 ~--~~~~~~v~~i~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg  236 (353)
                      +  ..+......+++ +++ .+++....+.|.+||....      ....+  .+....+ ..+++.++|+.+++-.. ++
T Consensus       150 ~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~------~~~~~g~~g~~~~P-~giavD~~G~i~Vad~~~~~  222 (279)
T d1q7fa_         150 FGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGITNYP-IGVGINSNGEILIADNHNNF  222 (279)
T ss_dssp             EECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTSCSE-EEEEECTTCCEEEEECSSSC
T ss_pred             ccccccccccceeeeccceeEEeeeccccceeeeecCCc------eeeeecccccccCC-cccccccCCeEEEEECCCCc
Confidence            4  334556777888 333 6667777889999997643      23333  2233445 89999999997777543 45


Q ss_pred             cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCC
Q 018591          237 FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAF  290 (353)
Q Consensus       237 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~  290 (353)
                      .|.+|+.. ++...............-.++.++|.+++ ...++.|++|.....
T Consensus       223 ~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         223 NLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred             EEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence            79999854 32222222222222334456666777555 457899999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=8.8e-06  Score=61.73  Aligned_cols=230  Identities=10%  Similarity=0.041  Sum_probs=120.7

Q ss_pred             cEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-CC--cEEEEEcccCccceeEEeeccccccceeeeecccc
Q 018591           37 DIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DS--RIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQS  111 (353)
Q Consensus        37 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (353)
                      .|.|-|.......... .+...+..-+|+  |+.|+-... ++  .+.+.+...+.                        
T Consensus        20 ~l~i~d~dG~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~------------------------   74 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA------------------------   74 (269)
T ss_dssp             EEEEEETTSCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC------------------------
T ss_pred             EEEEEcCCCCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc------------------------
Confidence            5777776544444333 335667788887  888875433 33  24444444333                        


Q ss_pred             eeEeecccceeeeeecCCceEEEEEeC--CeEEE-ecCCCcEEE--EEcCCceeeeeccccCcceEEEEE--eCC-eEEE
Q 018591          112 NYVQTRRHHKRLWIEHADSISCLTVYN--GLIYS-GSWDKTLKV--WRVADLKCLESIKAHDDAVNGLVA--SKG-IVYS  183 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~-~~~dg~v~i--wd~~~~~~~~~~~~~~~~v~~i~~--~~~-~l~~  183 (353)
                               ...+..+........|+|  ..++. ...++...+  +............ .........+  .+. .+++
T Consensus        75 ---------~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  144 (269)
T d2hqsa1          75 ---------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFT  144 (269)
T ss_dssp             ---------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEE
T ss_pred             ---------eeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeee-ccccccccccccccccceec
Confidence                     112224666777888888  44443 333333333  3322233333322 2222233333  222 5555


Q ss_pred             EcCCCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCC-CcEEEeeccccccceeeeeeccccc
Q 018591          184 ASADGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSD-GFVMGWEGNVEIVRWKLACETKAHE  260 (353)
Q Consensus       184 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~  260 (353)
                      ...+|.  |...++....      .......... .....++|+++.++..+.+ +...+|...........  ......
T Consensus       145 ~~~~g~~~i~~~~~~~~~------~~~~~~~~~~-~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~  215 (269)
T d2hqsa1         145 SDQAGRPQVYKVNINGGA------PQRITWEGSQ-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV--LSSTFL  215 (269)
T ss_dssp             ECTTSSCEEEEEETTSSC------CEECCCSSSE-EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE--CCCSSS
T ss_pred             ccccCCceEeeeeccccc------ceeeeccccc-ccccccccccceeEEEeecCCceeeeEeecccccceE--eecCcc
Confidence            555665  4445555443      2222233333 3778899999988776544 34444433332111111  122223


Q ss_pred             eeEEEEEEcCcEEEEec---CCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          261 MAVLCVCLVGEFLCSGS---ADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       261 ~~v~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                      .....++|+|+.|+-.+   ....|+++++..+.    ...+....+.+...+|+|-
T Consensus       216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECCC
T ss_pred             ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEEeCCCCcEEeEEeCCC
Confidence            34456888899876433   34578999998754    2234445667888999983

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.67  E-value=3.4e-05  Score=59.85  Aligned_cols=239  Identities=8%  Similarity=0.068  Sum_probs=129.7

Q ss_pred             CceEEEEEC--CcEEEEEeC-------CCcEEEEeCCCceeeEEeccC----ceeeEEEEEe--CCEEEEecCCCcEEEE
Q 018591           17 GSVSSLALC--GEFILSASQ-------GKDIIVWQQPDLRMFTKFGHG----DGSVKAVVTV--GNKVFTAHQDSRIRVW   81 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~-------dg~v~vwd~~~~~~~~~~~~~----~~~v~~~~~~--~~~l~s~~~dg~i~~w   81 (353)
                      .....++|+  |++.++...       +|+|..||..+++........    .+.-..+.++  ++.++++...+.+...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            345667886  776665332       467999998887654433221    1224567887  6677777776778888


Q ss_pred             EcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeec-CCceEEEEEeC-CeEEEec--------------
Q 018591           82 KVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEH-ADSISCLTVYN-GLIYSGS--------------  145 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~l~~~~--------------  145 (353)
                      +.+.....   .......                          +. -...+.+.+.+ ..|..+.              
T Consensus        98 ~~~g~~~~---~~~~~~~--------------------------g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          98 QTDGTFEE---IAKKDSE--------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             ETTSCEEE---CCSBCTT--------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             eCCCcEEE---EEecccc--------------------------ccccCCCcEEEECCCCCEEEecCccCccccccccee
Confidence            87654311   0000000                          00 01234555655 3333322              


Q ss_pred             --CCCcEEEEEcCCceeeeeccccCcceEEEEE-eC-C-----eEEEEcCCCcEEEEeCCCCCcc-cccceeeeecc-CC
Q 018591          146 --WDKTLKVWRVADLKCLESIKAHDDAVNGLVA-SK-G-----IVYSASADGKIKAWGKELGKSH-CHSLKGILEGH-KD  214 (353)
Q Consensus       146 --~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~-~-----~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~-~~  214 (353)
                        .+|.|..++. .++..... ..-...+.+++ ++ +     ++++-+..+.|..||+...... .......+... ..
T Consensus       149 ~~~~G~v~~~~~-dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         149 QEKFGSIYCFTT-DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSSCEEEEEECT-TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             ccCCceEEEEee-cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence              1234444443 23322222 22233456777 22 2     4455577888999987644311 00111122222 22


Q ss_pred             ceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEE--cCc-EEEEecCCCeEEEEecCCCc
Q 018591          215 VSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCL--VGE-FLCSGSADKSIGIWKREAFG  291 (353)
Q Consensus       215 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iw~~~~~~  291 (353)
                      .+ ..+++.++|++.++....+.|.+||.+.+.    .............++++  +++ ++++.+.+|.|..+++....
T Consensus       227 ~p-dGiavD~~GnlyVa~~~~g~I~~~dp~~g~----~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         227 GA-DGMDFDEDNNLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EE-EEEEEBTTCCEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             cc-eeeEEecCCcEEEEEcCCCEEEEEeCCCCE----EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            33 689999999988888788999999988763    22222222233344444  554 56777788989888876544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.52  E-value=0.0001  Score=57.30  Aligned_cols=225  Identities=11%  Similarity=0.039  Sum_probs=122.8

Q ss_pred             eeeEEEEEe--CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEE
Q 018591           57 GSVKAVVTV--GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCL  134 (353)
Q Consensus        57 ~~v~~~~~~--~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  134 (353)
                      ..+..++|+  ++..++-..++.|..|+.+.+....                                .+.........+
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~--------------------------------~~~~~~~~p~gl   87 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--------------------------------PFVSHKANPAAI   87 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--------------------------------EEECSSSSEEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE--------------------------------EEeCCCCCeeEE
Confidence            344677786  6666666677778777766553110                                011233456788


Q ss_pred             EEeC-CeEEEec-C----CCcEEEEEcCCceeeeeccc--cCcceEEEEE-eCCeEEEEcCC-------CcEEEEeCCCC
Q 018591          135 TVYN-GLIYSGS-W----DKTLKVWRVADLKCLESIKA--HDDAVNGLVA-SKGIVYSASAD-------GKIKAWGKELG  198 (353)
Q Consensus       135 ~~~~-~~l~~~~-~----dg~v~iwd~~~~~~~~~~~~--~~~~v~~i~~-~~~~l~~~~~d-------g~i~iwd~~~~  198 (353)
                      ++.+ ..++++. .    .+.+...+............  .....+.+++ +++.++.+...       +.+..++....
T Consensus        88 a~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~  167 (319)
T d2dg1a1          88 KIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR  167 (319)
T ss_dssp             EECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred             EECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc
Confidence            8887 3444332 2    23455555544433332221  1234667777 44455544332       23555554433


Q ss_pred             CcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccceee-----eeeccccc-eeEEEEEEcCc
Q 018591          199 KSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVRWKL-----ACETKAHE-MAVLCVCLVGE  271 (353)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~-~~v~~~~~~~~  271 (353)
                      .      ...+...-..+ +.++|+|+++.| ++-+..+.|..|++.........     ........ ..-+++..+|+
T Consensus       168 ~------~~~~~~~~~~p-nGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~  240 (319)
T d2dg1a1         168 T------VTPIIQNISVA-NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN  240 (319)
T ss_dssp             C------EEEEEEEESSE-EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred             e------eEEEeecccee-eeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC
Confidence            2      22222222334 789999999866 45566789999988653211111     11111111 11244555688


Q ss_pred             EEEEecCCCeEEEEecCCCcceEEeccc---cCCCcCeEEEEeecCCCCCCeEEEEc
Q 018591          272 FLCSGSADKSIGIWKREAFGKLCRVGAI---TGHEGPVKCLQASPNAVGGGFLLYSG  325 (353)
Q Consensus       272 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~~~l~s~  325 (353)
                      +.++...++.|.+||. .++....+...   .++...+++++|.|+    ...+++.
T Consensus       241 l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~----~~~~~~t  292 (319)
T d2dg1a1         241 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG----TNQLIIC  292 (319)
T ss_dssp             EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT----SCEEEEE
T ss_pred             EEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCC----CCEEEEE
Confidence            8888888999999996 45644333221   244556889999987    5555544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.44  E-value=0.0002  Score=56.76  Aligned_cols=161  Identities=11%  Similarity=0.096  Sum_probs=91.0

Q ss_pred             CceEEEEEeC--CeEEEec-CCCcEEEEEcCCc-ee--eeec--cccCcceEEEEEeCC---eEEEEcCCCcEEEEeCCC
Q 018591          129 DSISCLTVYN--GLIYSGS-WDKTLKVWRVADL-KC--LESI--KAHDDAVNGLVASKG---IVYSASADGKIKAWGKEL  197 (353)
Q Consensus       129 ~~i~~~~~~~--~~l~~~~-~dg~v~iwd~~~~-~~--~~~~--~~~~~~v~~i~~~~~---~l~~~~~dg~i~iwd~~~  197 (353)
                      ..+.++.|+|  ++++++. ....|.+|+.... ..  ....  .........++|+++   ..++...+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            3477999999  5566654 3457888876532 22  1111  123456788999444   445666789999999876


Q ss_pred             CCcccccceeeee--------------ccCCceeeEEEEcCCCCeEEeecC------CCcEEEeeccccccceeee--ee
Q 018591          198 GKSHCHSLKGILE--------------GHKDVSLNSVVVSDDGKWVYGGGS------DGFVMGWEGNVEIVRWKLA--CE  255 (353)
Q Consensus       198 ~~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~--~~  255 (353)
                      .............              ..... ...+.++|+|++|+++..      .+.|..|++..........  ..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR-ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE-EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCceEEEEeeeeccccccccccccccccccCC-ccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            6421111111110              01111 257899999999987642      2236667665432111111  11


Q ss_pred             c--cccceeEEEEEE-cCcEEEEe-cCCCeEEEEecCCC
Q 018591          256 T--KAHEMAVLCVCL-VGEFLCSG-SADKSIGIWKREAF  290 (353)
Q Consensus       256 ~--~~~~~~v~~~~~-~~~~l~~~-~~dg~i~iw~~~~~  290 (353)
                      .  .+....-.++++ +|++|+++ ..++.|.+|+++..
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1  111222345565 57876655 57899999998653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.33  E-value=0.00035  Score=58.83  Aligned_cols=272  Identities=9%  Similarity=0.041  Sum_probs=138.2

Q ss_pred             EEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCc----eeeE-EEEEeCCEEEEec------CCCcEEEEEcccCccc
Q 018591           21 SLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGD----GSVK-AVVTVGNKVFTAH------QDSRIRVWKVSRSSEN   89 (353)
Q Consensus        21 ~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~v~-~~~~~~~~l~s~~------~dg~i~~w~~~~~~~~   89 (353)
                      .+++.+..++.++.||.+.--|.++|+.+.......    ..++ +-...++.++.+.      .+|.|+-+|+++++..
T Consensus       110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             cceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEE
Confidence            356666778888999999999999999887664321    1111 1112255555554      3678999999998732


Q ss_pred             eeEEeecccccccee------eeecccceeE-eecccceeeeeecCCce-EEEEEeC--CeEEEecC-------------
Q 018591           90 VFRLVDTLPTTKDYL------GKFMKQSNYV-QTRRHHKRLWIEHADSI-SCLTVYN--GLIYSGSW-------------  146 (353)
Q Consensus        90 ~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~i-~~~~~~~--~~l~~~~~-------------  146 (353)
                      -..  ...+......      .......... .........+......+ ...++.+  +.++.+..             
T Consensus       190 W~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~  267 (571)
T d2ad6a1         190 WRA--FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD  267 (571)
T ss_dssp             EEE--ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred             EEE--eccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccc
Confidence            211  1111100000      0000000000 00000000000000111 1122222  33332222             


Q ss_pred             ---CCcEEEEEcCCceeeeeccccCcceE-----------EEEEeCC---eEEEEcCCCcEEEEeCCCCCcccccce---
Q 018591          147 ---DKTLKVWRVADLKCLESIKAHDDAVN-----------GLVASKG---IVYSASADGKIKAWGKELGKSHCHSLK---  206 (353)
Q Consensus       147 ---dg~v~iwd~~~~~~~~~~~~~~~~v~-----------~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---  206 (353)
                         ...+...|.++++.+..++.....+.           .+.....   .++.++.+|.+.++|..+++.......   
T Consensus       268 n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~  347 (571)
T d2ad6a1         268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCc
Confidence               35688889999998877654322211           2222222   567888999999999988873110000   


Q ss_pred             -----------------------------eeeeccC-CceeeEEEEcCCCCeEEeecCC---------------------
Q 018591          207 -----------------------------GILEGHK-DVSLNSVVVSDDGKWVYGGGSD---------------------  235 (353)
Q Consensus       207 -----------------------------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d---------------------  235 (353)
                                                   ....... ...-...+++|+...++....+                     
T Consensus       348 ~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~  427 (571)
T d2ad6a1         348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccc
Confidence                                         0000000 0000235667766665543322                     


Q ss_pred             ----------------CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEEec
Q 018591          236 ----------------GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCRVG  297 (353)
Q Consensus       236 ----------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  297 (353)
                                      |.+.-+|+.+++..++...........   +...+.++++|+.||.++-+|.++++.+....
T Consensus       428 ~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~---l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT---LYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC---EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce---eEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence                            456677777776665544332222222   23357788899999999999999999655543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=0.00039  Score=53.16  Aligned_cols=174  Identities=11%  Similarity=0.044  Sum_probs=101.9

Q ss_pred             CceEEEEEeC-CeEEEecCCCcEEEEEcCCceeeeecc--c--cCcceEEEEE-eCCeEEEEcC-----CCcEEEEeCCC
Q 018591          129 DSISCLTVYN-GLIYSGSWDKTLKVWRVADLKCLESIK--A--HDDAVNGLVA-SKGIVYSASA-----DGKIKAWGKEL  197 (353)
Q Consensus       129 ~~i~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~--~--~~~~v~~i~~-~~~~l~~~~~-----dg~i~iwd~~~  197 (353)
                      ..+.++.+.+ +.++.++.+ .+..+|..+++......  .  ....++.+.+ +++.+..++.     .+.-.+|.+..
T Consensus        59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~  137 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK  137 (295)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET
T ss_pred             CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC
Confidence            4567777776 666666665 58899998876543321  1  1235677777 4555555542     23445666655


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEeeccccccc----eeeeeeccccceeEEEEEE--cC
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGWEGNVEIVR----WKLACETKAHEMAVLCVCL--VG  270 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~v~~~~~--~~  270 (353)
                      ++     ...... ....+ +.++|+++++.+ ++-+..+.|..|++......    ..............-.+..  +|
T Consensus       138 g~-----~~~~~~-~~~~~-Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G  210 (295)
T d2ghsa1         138 GK-----VTKLFA-DISIP-NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG  210 (295)
T ss_dssp             TE-----EEEEEE-EESSE-EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred             Cc-----EEEEee-ccCCc-ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC
Confidence            54     222222 22333 889999999865 45566788998887542111    1111222223333444444  47


Q ss_pred             cEEEEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEee-cC
Q 018591          271 EFLCSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQAS-PN  314 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  314 (353)
                      ++.++.-..+.|..||.+ ++.   +..+.--...+++++|- |+
T Consensus       211 nlWva~~~~g~V~~~dp~-G~~---~~~i~lP~~~~T~~~FGG~d  251 (295)
T d2ghsa1         211 HIWNARWGEGAVDRYDTD-GNH---IARYEVPGKQTTCPAFIGPD  251 (295)
T ss_dssp             CEEEEEETTTEEEEECTT-CCE---EEEEECSCSBEEEEEEESTT
T ss_pred             CEEeeeeCCCceEEecCC-CcE---eeEecCCCCceEEEEEeCCC
Confidence            777777678899999964 553   33333333568999997 44

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.24  E-value=0.00092  Score=56.18  Aligned_cols=63  Identities=0%  Similarity=-0.006  Sum_probs=43.9

Q ss_pred             CCcEEEEEeCCCcEEEEeC-CCceeeEEeccCce-----------eeEEEEEeCCEEEEecCCCcEEEEEcccCc
Q 018591           25 CGEFILSASQGKDIIVWQQ-PDLRMFTKFGHGDG-----------SVKAVVTVGNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        25 ~~~~l~s~~~dg~v~vwd~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      +|.+.++.+.++.|...|. ++|+.+.++.....           .-..+++.+..++.++.||.+.-.|.++++
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~  136 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGK  136 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhh
Confidence            3444444445789999997 47999988742110           012356667888899999999999998887

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.23  E-value=0.001  Score=56.15  Aligned_cols=62  Identities=15%  Similarity=0.214  Sum_probs=44.0

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCc----eeeE-EEEEeCCEEEEecC------CCcEEEEEcccCcc
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGD----GSVK-AVVTVGNKVFTAHQ------DSRIRVWKVSRSSE   88 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----~~v~-~~~~~~~~l~s~~~------dg~i~~w~~~~~~~   88 (353)
                      .+++.++.|+.|.-.|.++|+.+..+....    ..++ +-.+.++.++.+..      .|.|+-+|+++++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcE
Confidence            478899999999999999999998874321    1111 11223666776643      48899999999873

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=0.0005  Score=51.20  Aligned_cols=184  Identities=13%  Similarity=0.125  Sum_probs=121.3

Q ss_pred             CCcEEEEEcCCceeeeeccccCcceEEEEE-eCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccC---CceeeEEEE
Q 018591          147 DKTLKVWRVADLKCLESIKAHDDAVNGLVA-SKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHK---DVSLNSVVV  222 (353)
Q Consensus       147 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~v~~~~~  222 (353)
                      ...+.++|+++.+.++.+.- ..+|.--.| +++.|+..+. ..|+-|+++...    .+...+..|.   +.-|-....
T Consensus        82 g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT~-taVYHW~~~g~s----~P~k~fdR~~~L~~~QIInY~~  155 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYRT  155 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSEEEEECS-SEEEEEESSSSC----CCEEEEECCGGGTTCEEEEEEE
T ss_pred             CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCEEEEEcC-CceEEEcccCCC----CchhhhhhcccccCceEEEEEE
Confidence            57899999999999888765 456666667 7777766654 579999996543    2444444443   234567778


Q ss_pred             cCCCCeEEeec-------CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-----EEEE---ecCCCeEEEEec
Q 018591          223 SDDGKWVYGGG-------SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-----FLCS---GSADKSIGIWKR  287 (353)
Q Consensus       223 ~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~---~~~dg~i~iw~~  287 (353)
                      +++.++++..+       -.|.+.+|..+.+     ..+.+.+|......+..+|+     +++-   +...++++|.++
T Consensus       156 d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEi  230 (327)
T d1utca2         156 DAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEV  230 (327)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEEC
T ss_pred             CCCCCEEEEEeEecCCCceeEEEEEEEeccC-----cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEc
Confidence            88888876543       2367889988775     44455666665555544422     2221   233478999998


Q ss_pred             CCCcc---e---EEecc---ccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          288 EAFGK---L---CRVGA---ITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       288 ~~~~~---~---~~~~~---~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      .....   .   +.+..   ...-.+-..++..++.    -..+..-+.-|.|++||++++.++..-
T Consensus       231 g~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~k----ygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         231 GTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK----HDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             SCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETT----TTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCccCCCCCcceeEEEECCccccCCcEEEEEeecc----CCEEEEEecCcEEEEEEcccccEEEEe
Confidence            76321   0   01111   1123455678888887    678888899999999999999887643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.14  E-value=0.00088  Score=51.81  Aligned_cols=199  Identities=12%  Similarity=0.107  Sum_probs=112.7

Q ss_pred             CceEEEEEC--CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC--CCcEEEEEcccCccce
Q 018591           17 GSVSSLALC--GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ--DSRIRVWKVSRSSENV   90 (353)
Q Consensus        17 ~~v~~~~~~--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~~w~~~~~~~~~   90 (353)
                      ..+..++|+  |++.++-..++.|..|+.++++....+.........++++  ++.+++...  .....++.+.......
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            345688996  7877777788999999988777666655555567788887  555554322  2233444443322111


Q ss_pred             eEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecCC-------CcEEEEEcCCceeee
Q 018591           91 FRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSWD-------KTLKVWRVADLKCLE  162 (353)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d-------g~v~iwd~~~~~~~~  162 (353)
                      .......                            .-....+.+.+.+ ..+..+...       +.+..++... +.+.
T Consensus       120 ~~~~~~~----------------------------~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~  170 (319)
T d2dg1a1         120 QDIIEDL----------------------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVT  170 (319)
T ss_dssp             EEEECSS----------------------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEE
T ss_pred             eeeccCC----------------------------CcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeE
Confidence            1111100                            1122356677777 444444322       2355555432 2233


Q ss_pred             eccccCcceEEEEEeC-C--eEEEEcCCCcEEEEeCCCCCccccccee---eeeccCCceeeEEEEcCCCCeEEeecCCC
Q 018591          163 SIKAHDDAVNGLVASK-G--IVYSASADGKIKAWGKELGKSHCHSLKG---ILEGHKDVSLNSVVVSDDGKWVYGGGSDG  236 (353)
Q Consensus       163 ~~~~~~~~v~~i~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  236 (353)
                      .+...-...+.++|++ +  ++++-+..+.|..||+............   ........+ ..+++.++|++.++....+
T Consensus       171 ~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P-dGl~vD~~G~l~Va~~~~g  249 (319)
T d2dg1a1         171 PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP-DSCCIDSDDNLYVAMYGQG  249 (319)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE-EEEEEBTTCCEEEEEETTT
T ss_pred             EEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccce-eeeeEcCCCCEEEEEcCCC
Confidence            2222234457889943 3  4566677889999998654311111111   111112234 7899999999888888899


Q ss_pred             cEEEeeccc
Q 018591          237 FVMGWEGNV  245 (353)
Q Consensus       237 ~i~i~d~~~  245 (353)
                      .|.+||...
T Consensus       250 ~V~~~~p~G  258 (319)
T d2dg1a1         250 RVLVFNKRG  258 (319)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEECCCC
Confidence            999999643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.13  E-value=0.0017  Score=54.66  Aligned_cols=62  Identities=10%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCc----------eee-EEEEEeCCEEEEecCCCcEEEEEcccCc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGD----------GSV-KAVVTVGNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~----------~~v-~~~~~~~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      +..|+.++.++.|.-+|.++|+.+..+....          ..+ ..+......++.++.|+.+.-.|.++++
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~  149 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGK  149 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeecccccc
Confidence            4466777888999999999999998874321          011 2344456677888888888888887776

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.11  E-value=0.0018  Score=54.29  Aligned_cols=62  Identities=13%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCce-----------eeEEEEEeCCEEEEecCCCcEEEEEcccCc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDG-----------SVKAVVTVGNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      +..|+.++.++.|.-.|.++|+.+.++.....           .-..+...+..++.+..|+.|.-.|..+++
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~  138 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGK  138 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCc
Confidence            44666777889999999999999988742210           112233446678888888888888887776

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=0.0013  Score=49.20  Aligned_cols=202  Identities=10%  Similarity=0.015  Sum_probs=103.6

Q ss_pred             ecCCceEEEEEeC--CeEEEecCCC---cEEEEEcCCceeeeeccccCcceEEEEEeCC--eEE-EEcCCCcEEEEeCCC
Q 018591          126 EHADSISCLTVYN--GLIYSGSWDK---TLKVWRVADLKCLESIKAHDDAVNGLVASKG--IVY-SASADGKIKAWGKEL  197 (353)
Q Consensus       126 ~~~~~i~~~~~~~--~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~l~-~~~~dg~i~iwd~~~  197 (353)
                      .+...+..-+|+|  +.|+......   .+.+.+...+... .+..+........|+++  .++ ....++...++....
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            4566788889999  6666543332   4666676555443 33445677778888443  333 333344433333222


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcCCCCeE-EeecCCCcEEEe--eccccccceeeeeeccccceeEEEEEEcCcEEE
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWV-YGGGSDGFVMGW--EGNVEIVRWKLACETKAHEMAVLCVCLVGEFLC  274 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  274 (353)
                      ...    ............ ....+++++..+ ++...+|...+|  ++....  .... ........-..++++++.++
T Consensus       115 ~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         115 ASG----QIRQVTDGRSNN-TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRI-TWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             TTC----CEEECCCCSSCE-EEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEEC-CCSSSEEEEEEECTTSSEEE
T ss_pred             ccc----cceeeeeccccc-cccccccccccceecccccCCceEeeeeccccc--ceee-ecccccccccccccccceeE
Confidence            220    111222222222 455666766544 444455554444  444431  1111 11111222334555677666


Q ss_pred             EecC-CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccC---CCeEEEEEcCCCCCcc
Q 018591          275 SGSA-DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSL---DKSLRVWWVSKQSSTS  343 (353)
Q Consensus       275 ~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~~~~  343 (353)
                      ..+. .+...+|..........   ...+........|+||    |+.|+..+.   ...|.++++..+...+
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~p~~SPD----G~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLATGGVQ---VLSSTFLDETPSLAPN----GTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             EEEECSSCEEEEEEETTTCCEE---ECCCSSSCEEEEECTT----SSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             EEeecCCceeeeEeecccccce---EeecCccccceEECCC----CCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            5544 44444444333222112   2234556778899999    888875543   4578999998765443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.90  E-value=0.0024  Score=48.64  Aligned_cols=211  Identities=10%  Similarity=0.035  Sum_probs=122.2

Q ss_pred             EEEEC---CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeec
Q 018591           21 SLALC---GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDT   96 (353)
Q Consensus        21 ~~~~~---~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~   96 (353)
                      +..|+   +.+..+--..+.|.-||..+++.. .+.. ...+.++++. ...|+.++.+ .+..+|..+++..   .+..
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~---~l~~   95 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIASDD-GLFLRDTATGVLT---LHAE   95 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEE---EEEC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-CCCcEEEEEecCCCEEEEEeC-ccEEeecccceee---EEee
Confidence            44564   556666556789999998887654 2322 3456777776 5555556665 5888898877521   2111


Q ss_pred             cccccceeeeecccceeEeecccceeeeeecCCceEEEEEeC-CeEEEecC-----CCcEEEEEcCCceeeeeccccCcc
Q 018591           97 LPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN-GLIYSGSW-----DKTLKVWRVADLKCLESIKAHDDA  170 (353)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~  170 (353)
                      .+..                         .....++.+.+.+ ..+..++.     .+.-.+|.+..++....... -..
T Consensus        96 ~~~~-------------------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~  149 (295)
T d2ghsa1          96 LESD-------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISI  149 (295)
T ss_dssp             SSTT-------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESS
T ss_pred             eecC-------------------------CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCC
Confidence            1110                         1122466777777 44444432     23445666666655444433 334


Q ss_pred             eEEEEEeCC---eEEEEcCCCcEEEEeCCCCCcccc---cceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          171 VNGLVASKG---IVYSASADGKIKAWGKELGKSHCH---SLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       171 v~~i~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      .+.++++++   ++++-+..+.|..+++........   ............+ ..+++..+|++.++....+.|..||..
T Consensus       150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~p-dG~~vD~~GnlWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM-DGSVCDAEGHIWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE-EEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccc-cceEEcCCCCEEeeeeCCCceEEecCC
Confidence            567888333   566777788999998754321110   1111122333444 889999999988877778899999965


Q ss_pred             ccccceeeeeeccccceeEEEEEEc
Q 018591          245 VEIVRWKLACETKAHEMAVLCVCLV  269 (353)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~v~~~~~~  269 (353)
                      ..     ......-....++++++-
T Consensus       229 G~-----~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         229 GN-----HIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             CC-----EEEEEECSCSBEEEEEEE
T ss_pred             Cc-----EeeEecCCCCceEEEEEe
Confidence            43     333333333456677774

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0016  Score=53.20  Aligned_cols=191  Identities=8%  Similarity=-0.122  Sum_probs=98.5

Q ss_pred             ceEEEEEeC--CeEEEe---------cCCCcEEEEEcCCceeeee--ccccCcceEEEEEeCC--eEEEEcCCCcEEEEe
Q 018591          130 SISCLTVYN--GLIYSG---------SWDKTLKVWRVADLKCLES--IKAHDDAVNGLVASKG--IVYSASADGKIKAWG  194 (353)
Q Consensus       130 ~i~~~~~~~--~~l~~~---------~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~--~l~~~~~dg~i~iwd  194 (353)
                      .+....++|  +.++..         +..+.+.++|+.+++....  .......+....|+|+  .++-. .++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEEEEe
Confidence            344556666  454443         3457889999988765433  2223344555667433  44443 356788888


Q ss_pred             CCCCCcccccceeeee-ccCC----------------ceeeEEEEcCCCCeEEeecC-CCcEEEeeccccccceeeeeec
Q 018591          195 KELGKSHCHSLKGILE-GHKD----------------VSLNSVVVSDDGKWVYGGGS-DGFVMGWEGNVEIVRWKLACET  256 (353)
Q Consensus       195 ~~~~~~~~~~~~~~~~-~~~~----------------~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~  256 (353)
                      ...+.     ..+... +...                ..-.++.|||||++|+.... +..+..+.+....         
T Consensus       141 ~~~~~-----~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~---------  206 (465)
T d1xfda1         141 HVGKQ-----AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT---------  206 (465)
T ss_dssp             SSSSC-----CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS---------
T ss_pred             cCCCc-----eEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc---------
Confidence            76654     111111 1111                11157789999999987653 3445444432210         


Q ss_pred             cccceeEEEEEEcCcEEEEecC--CCeEEEEecCCCcceEEecc---ccCCCcCeEEEEeecCCCCCCeEEEEcc----C
Q 018591          257 KAHEMAVLCVCLVGEFLCSGSA--DKSIGIWKREAFGKLCRVGA---ITGHEGPVKCLQASPNAVGGGFLLYSGS----L  327 (353)
Q Consensus       257 ~~~~~~v~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~~l~s~~----~  327 (353)
                      .........+.+-    .+|..  ...+.++|+.++........   ......-+..+.|+|+    +++++...    .
T Consensus       207 ~~~~p~~~~~~Yp----~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d----~~~~~~~~nR~q~  278 (465)
T d1xfda1         207 GSIYPTVKPYHYP----KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS----TKVAVTWLNRAQN  278 (465)
T ss_dssp             SSSSCCCEEEECC----BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS----SEEEEEEEETTSC
T ss_pred             ccccceeeeeecc----ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC----CeEEEEEEccccc
Confidence            0000111111110    11111  13577788876543211111   1122334788999998    77666632    2


Q ss_pred             CCeEEEEEcCCCCCcc
Q 018591          328 DKSLRVWWVSKQSSTS  343 (353)
Q Consensus       328 dg~i~iw~~~~~~~~~  343 (353)
                      ...|.++|..+++...
T Consensus       279 ~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         279 VSILTLCDATTGVCTK  294 (465)
T ss_dssp             EEEEEEEETTTCCEEE
T ss_pred             cceEEEEcCCCCcEEE
Confidence            2368888888876543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.0047  Score=45.98  Aligned_cols=199  Identities=9%  Similarity=-0.010  Sum_probs=114.7

Q ss_pred             cCCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCceeeeeccccCcceEEEEE--eCC-eEEEEcCCCcEEEEeCCCCCc
Q 018591          127 HADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA--SKG-IVYSASADGKIKAWGKELGKS  200 (353)
Q Consensus       127 ~~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~-~l~~~~~dg~i~iwd~~~~~~  200 (353)
                      +...+..++|+.  +.++-. ..++.|+..+++.......+......+.++++  ..+ ..++-...+.|.+.++.... 
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-  112 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-  112 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce-
Confidence            444577888886  555554 56678888888765444444333356777777  244 44566667899999987654 


Q ss_pred             ccccceeeeeccCCceeeEEEEcCCCCeEEeecC-CCc--EEEeeccccccceeeeeeccccceeEEEEEEc--CcEE-E
Q 018591          201 HCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGS-DGF--VMGWEGNVEIVRWKLACETKAHEMAVLCVCLV--GEFL-C  274 (353)
Q Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~  274 (353)
                          ...........+ ..+++.|...+++-... .+.  |..-++.....  ....  ...-.....++.|  ++.| .
T Consensus       113 ----~~~l~~~~l~~p-~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~--~~~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         113 ----RRVLFDTGLVNP-RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILA--QDNLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             ----CEEEECSSCSSE-EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEE--CTTCSCEEEEEEETTTTEEEE
T ss_pred             ----EEEEecccccCC-cEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeee--eecccccceEEEeecCcEEEE
Confidence                222222333444 89999997766654432 223  44444443311  1111  1112233445444  5555 5


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCccc
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSD  344 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~  344 (353)
                      +-...+.|...+++..... .+  +.+.. ...+|++..     +.+..+-...+.|...+..+++.+..
T Consensus       184 ~d~~~~~I~~~~~~g~~~~-~v--~~~~~-~P~~lav~~-----~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRR-KV--LEGLQ-YPFAVTSYG-----KNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             EETTTTEEEEEETTEEEEE-EE--EECCC-SEEEEEEET-----TEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EeCCCCEEEEEECCCCCeE-EE--ECCCC-CcEEEEEEC-----CEEEEEECCCCEEEEEECCCCccceE
Confidence            5567789999998764422 22  22222 245787763     45556656778898889887776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.68  E-value=0.011  Score=49.65  Aligned_cols=113  Identities=7%  Similarity=0.001  Sum_probs=66.6

Q ss_pred             ECCcEEEEEeCCCcEEEEeC-CCceeeEEeccCce----------e-eEEEEEe------CCEEEEecCCCcEEEEEccc
Q 018591           24 LCGEFILSASQGKDIIVWQQ-PDLRMFTKFGHGDG----------S-VKAVVTV------GNKVFTAHQDSRIRVWKVSR   85 (353)
Q Consensus        24 ~~~~~l~s~~~dg~v~vwd~-~~~~~~~~~~~~~~----------~-v~~~~~~------~~~l~s~~~dg~i~~w~~~~   85 (353)
                      .+|.+.++.+.++.|...|. ++|+.+..+.....          . -+.+++.      +.+++.++.|+.|.-.|.++
T Consensus        61 ~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             ECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            34555566666788888887 58999988743211          0 1234442      23688899999999999988


Q ss_pred             CccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceE-EEEEeCCeEEEecC------CCcEEEEEcCCc
Q 018591           86 SSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSIS-CLTVYNGLIYSGSW------DKTLKVWRVADL  158 (353)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~------dg~v~iwd~~~~  158 (353)
                      ++...........                            ....++ .-.+..+.++++..      .|.|+-+|.+++
T Consensus       141 G~~~w~~~~~d~~----------------------------~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG  192 (596)
T d1w6sa_         141 GETVWKVENSDIK----------------------------VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTG  192 (596)
T ss_dssp             CCEEEEEECCCGG----------------------------GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTC
T ss_pred             Cceeccccccccc----------------------------cccccccCCcEECCeEEEeeccccccccCceEEEECCCC
Confidence            8732111100000                            000000 11122356666643      489999999999


Q ss_pred             eeeeec
Q 018591          159 KCLESI  164 (353)
Q Consensus       159 ~~~~~~  164 (353)
                      +.+.++
T Consensus       193 ~~~W~~  198 (596)
T d1w6sa_         193 EQVWRA  198 (596)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            988765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.64  E-value=0.0083  Score=47.18  Aligned_cols=71  Identities=15%  Similarity=0.110  Sum_probs=44.4

Q ss_pred             eEEEEcCCCCeEEeec-CCCcEEEeeccccccce--------eeeeeccccceeEEEEEEc--CcEEEEecCCCeEEEEe
Q 018591          218 NSVVVSDDGKWVYGGG-SDGFVMGWEGNVEIVRW--------KLACETKAHEMAVLCVCLV--GEFLCSGSADKSIGIWK  286 (353)
Q Consensus       218 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~iw~  286 (353)
                      ..+.++|||+++++++ .+.++.++|++.-....        ....+.. ....-+.-.++  |.-..+-.-|..|.-|+
T Consensus       278 HGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCccccccCCCceEEEEeeccceEEEEe
Confidence            7799999999987655 58899999997522110        1111111 11222344455  55555667899999999


Q ss_pred             cCC
Q 018591          287 REA  289 (353)
Q Consensus       287 ~~~  289 (353)
                      +..
T Consensus       357 ~~~  359 (459)
T d1fwxa2         357 IED  359 (459)
T ss_dssp             HHH
T ss_pred             cch
Confidence            853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.64  E-value=0.0087  Score=47.27  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=38.4

Q ss_pred             CCcEEEEEeCCC-----------cEEEEeCCCceeeE--Ee-ccCceeeEEEEEe--CCEEEEecCC-CcEEEEEcccCc
Q 018591           25 CGEFILSASQGK-----------DIIVWQQPDLRMFT--KF-GHGDGSVKAVVTV--GNKVFTAHQD-SRIRVWKVSRSS   87 (353)
Q Consensus        25 ~~~~l~s~~~dg-----------~v~vwd~~~~~~~~--~~-~~~~~~v~~~~~~--~~~l~s~~~d-g~i~~w~~~~~~   87 (353)
                      +|+.++.|+.+.           .+.+||..+++-..  .. ..+.....+..+.  +..++.|+.+ ..+.+||..+..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            588888887531           37799998765322  11 2222222233333  6777777655 589999988765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.02  Score=46.51  Aligned_cols=170  Identities=9%  Similarity=-0.055  Sum_probs=83.7

Q ss_pred             ceEEEEE-eCCeEEEE--cCC---CcEEEEeCCCCCcccccceeeeeccCCc----eeeEEEEcCCCCeEE---eecCCC
Q 018591          170 AVNGLVA-SKGIVYSA--SAD---GKIKAWGKELGKSHCHSLKGILEGHKDV----SLNSVVVSDDGKWVY---GGGSDG  236 (353)
Q Consensus       170 ~v~~i~~-~~~~l~~~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~---~~~~dg  236 (353)
                      .+..+.| +++.++..  ..+   ..+.++|..+++     ...........    .-....|+|+|+.++   ..-.+|
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~-----~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g  330 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG  330 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc-----EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecc
Confidence            3566778 44433333  222   247788888876     33222222111    113467899988543   222333


Q ss_pred             --cEEEeeccccc--cceeeeeeccccceeE---EEEEEcCc-EEEEecCC--Ce--EEEEecCCCcceEEeccccCCCc
Q 018591          237 --FVMGWEGNVEI--VRWKLACETKAHEMAV---LCVCLVGE-FLCSGSAD--KS--IGIWKREAFGKLCRVGAITGHEG  304 (353)
Q Consensus       237 --~i~i~d~~~~~--~~~~~~~~~~~~~~~v---~~~~~~~~-~l~~~~~d--g~--i~iw~~~~~~~~~~~~~~~~h~~  304 (353)
                        .+..+++....  ........+....-.|   ..+...++ ..+++..+  +.  ++--++.......++........
T Consensus       331 ~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~  410 (465)
T d1xfda1         331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENC  410 (465)
T ss_dssp             SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSC
T ss_pred             cCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCC
Confidence              34433332110  0111122222223333   33343444 34455433  23  44444444333223322223445


Q ss_pred             CeEEEEeecCCCCCCeEEEEccCC---CeEEEEEcCCCCCcccccCC
Q 018591          305 PVKCLQASPNAVGGGFLLYSGSLD---KSLRVWWVSKQSSTSDSEEK  348 (353)
Q Consensus       305 ~v~~~~~~~~~~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~  348 (353)
                      ...++.|||+    +++++.....   -.+.+++..+++.+..++.+
T Consensus       411 ~~~~~~~S~~----~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~N  453 (465)
T d1xfda1         411 TYFSASFSHS----MDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETN  453 (465)
T ss_dssp             CCCEEEECTT----SSEEEEECCSSSSCCEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEECCC----CCEEEEEeecCCCCeEEEEECCCCCEEEEEcCC
Confidence            6789999999    8888744332   56888998888887766544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.30  E-value=0.036  Score=46.44  Aligned_cols=62  Identities=11%  Similarity=0.157  Sum_probs=45.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCc--------ee-eEEEEEeCCEEEEecCCCcEEEEEcccCc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGD--------GS-VKAVVTVGNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~--------~~-v~~~~~~~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      +..|+.++.++.|.-.|..+|+.+.++....        .. -..++..++.++.++.|+.+.-.|.++++
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~  138 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGK  138 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccc
Confidence            5577778889999999999999998874321        11 12344556778888888888877877775

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.036  Score=41.04  Aligned_cols=242  Identities=9%  Similarity=-0.004  Sum_probs=130.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCce-----eeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCccceeEEeeccc
Q 018591           27 EFILSASQGKDIIVWQQPDLR-----MFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSENVFRLVDTLP   98 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~~~~~~~~~~~   98 (353)
                      .+|+-+.. +.|+-.+++...     ....+..+...+.+++|+  .+.++-. ..++.|+..+++......  .+    
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~--v~----   74 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--II----   74 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EE----
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE--EE----
Confidence            34444433 466666654332     222333445567888888  5655544 456778777776544111  11    


Q ss_pred             cccceeeeecccceeEeecccceeeeeecCCceEEEEEeC--CeEE-EecCCCcEEEEEcCCceeeeeccccCcceEEEE
Q 018591           99 TTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIY-SGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV  175 (353)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~  175 (353)
                                                ......+.+++++.  +.|+ +-...+.|.+.++........+.........++
T Consensus        75 --------------------------~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~  128 (263)
T d1npea_          75 --------------------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIV  128 (263)
T ss_dssp             --------------------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             --------------------------EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEE
Confidence                                      01223566777765  5554 555677899999875543333333335678888


Q ss_pred             EeC--CeEE-EEcCCCc--EEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccc
Q 018591          176 ASK--GIVY-SASADGK--IKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVR  249 (353)
Q Consensus       176 ~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~  249 (353)
                      +.+  ++++ +-...+.  |.--++....     ........-..+ ..+++.+.++.|+.. ...+.|...++......
T Consensus       129 vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-----~~~i~~~~~~~P-~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~  202 (263)
T d1npea_         129 TDPVRGNLYWTDWNRDNPKIETSHMDGTN-----RRILAQDNLGLP-NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR  202 (263)
T ss_dssp             EETTTTEEEEEECCSSSCEEEEEETTSCC-----CEEEECTTCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred             EecccCcEEEeecCCCCcEEEEecCCCCC-----ceeeeeeccccc-ceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE
Confidence            833  3444 3322233  4444554433     222222233444 899999877766544 56788999988765322


Q ss_pred             eeeeeeccccceeEEEEEEcCcEE-EEecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecC
Q 018591          250 WKLACETKAHEMAVLCVCLVGEFL-CSGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPN  314 (353)
Q Consensus       250 ~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  314 (353)
                       ..   ..+.. ....++..+..| .+-...+.|...|..+++....+.  .........++..++
T Consensus       203 -~v---~~~~~-~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~--~~~~~~~~gi~v~~~  261 (263)
T d1npea_         203 -KV---LEGLQ-YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH--PHKQTRLYGITIALS  261 (263)
T ss_dssp             -EE---EECCC-SEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC--CSSCCCCCCEEEECS
T ss_pred             -EE---ECCCC-CcEEEEEECCEEEEEECCCCEEEEEECCCCccceEEC--CCCCCCcceEEEeCC
Confidence             11   12211 124566655545 454567889999988876433222  122334556665553

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.046  Score=40.50  Aligned_cols=227  Identities=11%  Similarity=0.052  Sum_probs=124.1

Q ss_pred             EEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEe-cCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           29 ILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTA-HQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        29 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      |+.+.. ..|+-.++.+.+....+. ....+.++.|+  .+.|+-. ..++.|.--+++.......  .           
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~--~-----------   68 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--Y-----------   68 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------C-----------
T ss_pred             EEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc--e-----------
Confidence            333333 358888987765554444 34566788887  5655544 3455666555543221000  0           


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeC---CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe--CCe
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN---GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS--KGI  180 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~  180 (353)
                                     ..+.......+..+++..   +...+-...+.|.+.++........+.........+++.  .+.
T Consensus        69 ---------------~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~  133 (266)
T d1ijqa1          69 ---------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF  133 (266)
T ss_dssp             ---------------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE
T ss_pred             ---------------EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCe
Confidence                           000011223345666654   444455666789999987655444444445667888884  344


Q ss_pred             EEEE--cCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEee-cCCCcEEEeeccccccceeeeeecc
Q 018591          181 VYSA--SADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGG-GSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       181 l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      ++-.  +..+.|.-.++....     ........-..+ ..+++.+.++.|+-+ ...+.|...++.....  .......
T Consensus       134 ly~~~~~~~~~I~r~~~dGs~-----~~~l~~~~~~~p-~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~--~~~~~~~  205 (266)
T d1ijqa1         134 MYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWP-NGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDE  205 (266)
T ss_dssp             EEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCE-EEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECT
T ss_pred             EEEeccCCCcceeEeccCCCc-----eeccccccccee-eEEEeeccccEEEEecCCcCEEEEEECCCCCE--EEEEeCC
Confidence            4433  234556666665543     222223333444 899999877666554 5677888888866422  1111122


Q ss_pred             ccceeEEEEEEcCcEEE-EecCCCeEEEEecCCCcce
Q 018591          258 AHEMAVLCVCLVGEFLC-SGSADKSIGIWKREAFGKL  293 (353)
Q Consensus       258 ~~~~~v~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~  293 (353)
                      ........++..+..|. +-..++.|...+..+++..
T Consensus       206 ~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         206 KRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             TTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CcccccEEEEEECCEEEEEECCCCeEEEEECCCCcce
Confidence            22233456666655544 4456788888887776643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.052  Score=40.20  Aligned_cols=202  Identities=11%  Similarity=0.022  Sum_probs=111.1

Q ss_pred             CCceEEEEEeC--CeEEEe-cCCCcEEEEEcCCce----eeeeccccCcceEEEEE---eCCeEEEEcCCCcEEEEeCCC
Q 018591          128 ADSISCLTVYN--GLIYSG-SWDKTLKVWRVADLK----CLESIKAHDDAVNGLVA---SKGIVYSASADGKIKAWGKEL  197 (353)
Q Consensus       128 ~~~i~~~~~~~--~~l~~~-~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~i~~---~~~~l~~~~~dg~i~iwd~~~  197 (353)
                      ...+.+++|+.  +.++-. ..++.|.-.++....    ....+......+..+++   ..+..++-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34567888886  555554 345667666654321    11112222344556666   334566666778899999886


Q ss_pred             CCcccccceeeeeccCCceeeEEEEcCCCCeEEeec--CCCcEEEeeccccccceeeeeeccccceeEEEEEEcCc-EEE
Q 018591          198 GKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGG--SDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGE-FLC  274 (353)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~  274 (353)
                      ..     ...........+ ..++++|...++.-..  ..+.|...++...... .+. ........-.++.+.++ +..
T Consensus       109 ~~-----~~~~~~~~~~~P-~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-~l~-~~~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         109 VK-----RKTLFRENGSKP-RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLV-TENIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SS-----EEEEEECTTCCE-EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEE-CSSCSCEEEEEEETTTTEEEE
T ss_pred             ce-----EEEEEcCCCCCc-ceEEEEcccCeEEEeccCCCcceeEeccCCCcee-ccc-ccccceeeEEEeeccccEEEE
Confidence            65     333344444455 8899998655555433  3345666666544211 111 11111122234444444 445


Q ss_pred             EecCCCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          275 SGSADKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       275 ~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      +-...+.|...++...... .+...........+|++..     +.+..+-..++.|...+..+++...
T Consensus       181 ~d~~~~~I~~~~~dG~~~~-~~~~~~~~~~~p~~lav~~-----~~ly~td~~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFE-----DKVFWTDIINEAIFSANRLTGSDVN  243 (266)
T ss_dssp             EETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEEEEET-----TEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             ecCCcCEEEEEECCCCCEE-EEEeCCCcccccEEEEEEC-----CEEEEEECCCCeEEEEECCCCcceE
Confidence            5567789999998764422 2322232334466788774     4566665677888888877776554

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.75  E-value=0.062  Score=39.91  Aligned_cols=189  Identities=13%  Similarity=0.135  Sum_probs=109.3

Q ss_pred             cEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceee
Q 018591           27 EFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLG  105 (353)
Q Consensus        27 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  105 (353)
                      +.||--+ ..++.++|+++.+.++.+.-.+ .|.--.|- .+.|+..... .|+-|+++.... +.+....-+.-     
T Consensus        75 ~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT~t-aVYHW~~~g~s~-P~k~fdR~~~L-----  145 (327)
T d1utca2          75 KVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTDN-AVYHWSMEGESQ-PVKMFDRHSSL-----  145 (327)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEECSS-EEEEEESSSSCC-CEEEEECCGGG-----
T ss_pred             cEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEcCC-ceEEEcccCCCC-chhhhhhcccc-----
Confidence            3444444 4689999999999998887654 45444454 7777777654 899999965432 22221111100     


Q ss_pred             eecccceeEeecccceeeeeecCCceEEEEEeC--CeEEEe-------cCCCcEEEEEcCCceeeeeccccCcceEEEEE
Q 018591          106 KFMKQSNYVQTRRHHKRLWIEHADSISCLTVYN--GLIYSG-------SWDKTLKVWRVADLKCLESIKAHDDAVNGLVA  176 (353)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~-------~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~  176 (353)
                                           ....|.....++  +.++..       .-.|.+.+|..+. +.-+.+++|......+..
T Consensus       146 ---------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~  203 (327)
T d1utca2         146 ---------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKM  203 (327)
T ss_dssp             ---------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECC
T ss_pred             ---------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEc
Confidence                                 011222222222  111111       1126789999764 445666777665555554


Q ss_pred             eCC-----eEEEE---cCCCcEEEEeCCCCCcc--cc--cceee---eeccCCceeeEEEEcCCCCeEEeecCCCcEEEe
Q 018591          177 SKG-----IVYSA---SADGKIKAWGKELGKSH--CH--SLKGI---LEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGW  241 (353)
Q Consensus       177 ~~~-----~l~~~---~~dg~i~iwd~~~~~~~--~~--~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  241 (353)
                      +++     .++.+   ...+.+.+.++......  ..  .....   -....+.+ .++..++.-..+..-+.-|.+++|
T Consensus       204 ~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFP-vamqvs~kygiiyviTK~G~i~ly  282 (327)
T d1utca2         204 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITKYGYIHLY  282 (327)
T ss_dssp             TTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCE-EEEEEETTTTEEEEEETTSEEEEE
T ss_pred             CCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcE-EEEEeeccCCEEEEEecCcEEEEE
Confidence            222     22222   23468899988764321  11  11111   11224556 788899888899999999999999


Q ss_pred             eccccc
Q 018591          242 EGNVEI  247 (353)
Q Consensus       242 d~~~~~  247 (353)
                      |++++.
T Consensus       283 DleTgt  288 (327)
T d1utca2         283 DLETGT  288 (327)
T ss_dssp             ETTTCC
T ss_pred             Eccccc
Confidence            999983

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.74  E-value=0.084  Score=41.33  Aligned_cols=112  Identities=8%  Similarity=0.069  Sum_probs=58.1

Q ss_pred             EEEeC--CeEEEecCC-CcEEEEEcCCceeeee--ccccCcceEEEEEeCC-eEEEEcCC------CcEEEEeCCCCCcc
Q 018591          134 LTVYN--GLIYSGSWD-KTLKVWRVADLKCLES--IKAHDDAVNGLVASKG-IVYSASAD------GKIKAWGKELGKSH  201 (353)
Q Consensus       134 ~~~~~--~~l~~~~~d-g~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~-~l~~~~~d------g~i~iwd~~~~~~~  201 (353)
                      ..+.+  ..++.|+.+ ..+.+||..+..-...  +......-......++ .++.++.+      ..+.+||..+.+-.
T Consensus        81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3          81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             EEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence            34444  566666544 5899999987654332  2221222233333444 55555532      35889998876521


Q ss_pred             cccceee----eeccC-----CceeeEEEEcCCCCeEEeecCCCcEEEeecccc
Q 018591          202 CHSLKGI----LEGHK-----DVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVE  246 (353)
Q Consensus       202 ~~~~~~~----~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  246 (353)
                      .......    ...+.     ... ..+...++++.+..+..++.+.+++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         161 SLPNAKVNPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EETTSCSGGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ecCCCcccccccccccceeeccce-eEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            1000000    00000     001 22334467777888877777777777665

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.74  E-value=0.063  Score=39.74  Aligned_cols=60  Identities=12%  Similarity=0.082  Sum_probs=39.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEe--CCEEEEecC-CC-----cEEEEEcccCc
Q 018591           26 GEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTV--GNKVFTAHQ-DS-----RIRVWKVSRSS   87 (353)
Q Consensus        26 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg-----~i~~w~~~~~~   87 (353)
                      |+.+|-.+ +|.|.+.|+.+++..+ +..+.+.+....|+  |+.|+-... ++     .|.+++..++.
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            77777654 4678888998887654 55556677888888  787775432 22     35555655554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.63  E-value=0.021  Score=47.84  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             CcEEEEEcCCceeeeeccccCcce-EEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCC
Q 018591          148 KTLKVWRVADLKCLESIKAHDDAV-NGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDG  226 (353)
Q Consensus       148 g~v~iwd~~~~~~~~~~~~~~~~v-~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (353)
                      |.+.-||+.+++.+.+.+...... -.++..++++++++.||.++.+|.++++     .+-.+.......-.-+.|..+|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe-----~LW~~~~~~~~~~~P~ty~~~G  531 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE-----KLWEAPTGTGVVAAPSTYMVDG  531 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC-----EEEEEECSSCCCSCCEEEEETT
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCc-----EeEEEECCCCccccCEEEEECC
Confidence            578899999999988775432211 2345577899999999999999999998     4444433332211235566677


Q ss_pred             C
Q 018591          227 K  227 (353)
Q Consensus       227 ~  227 (353)
                      +
T Consensus       532 k  532 (573)
T d1kb0a2         532 R  532 (573)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.99  E-value=0.066  Score=44.80  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             CCCcEEEEEcCCceeeeeccccCcceE-EEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcC
Q 018591          146 WDKTLKVWRVADLKCLESIKAHDDAVN-GLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSD  224 (353)
Q Consensus       146 ~dg~v~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (353)
                      ..|.|.-+|+.+++.+.+.+.+..... .++..++.+++++.||.++.+|.++++     .+-.++......-.-+.+..
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe-----~LW~~~~~~~~~~~P~ty~~  538 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK-----ELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCC-----EEEEEECSSCCCSCCEEEEE
T ss_pred             CCCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCc-----EeEEEECCCCccccCEEEEE
Confidence            347899999999999888764332222 234467788899999999999999998     55444443332223467777


Q ss_pred             CCC-eEEe
Q 018591          225 DGK-WVYG  231 (353)
Q Consensus       225 ~~~-~l~~  231 (353)
                      +|+ ++++
T Consensus       539 ~G~qYv~i  546 (582)
T d1flga_         539 DGEQYLGV  546 (582)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            885 4443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.69  E-value=0.34  Score=38.01  Aligned_cols=186  Identities=12%  Similarity=0.113  Sum_probs=105.5

Q ss_pred             CeEEE-ecCCCcEEEEEcCCceeeeeccc-cCcceEEEEE--eCC--eEEEEcCC------------------CcEEEEe
Q 018591          139 GLIYS-GSWDKTLKVWRVADLKCLESIKA-HDDAVNGLVA--SKG--IVYSASAD------------------GKIKAWG  194 (353)
Q Consensus       139 ~~l~~-~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~--~~~--~l~~~~~d------------------g~i~iwd  194 (353)
                      +++++ -..++.|.+.|+++.++.+.+.. ....+..+..  .++  +++..+.+                  +.+..+|
T Consensus       100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID  179 (459)
T d1fwxa2         100 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD  179 (459)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEE
T ss_pred             eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEe
Confidence            45544 45788999999999988664432 2445566655  222  66665542                  2356677


Q ss_pred             CCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCC---------------cEEEeecc---------------
Q 018591          195 KELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDG---------------FVMGWEGN---------------  244 (353)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~i~d~~---------------  244 (353)
                      ..+.+     ......... .. ..+.++++|+++++.+.+.               .+.+++..               
T Consensus       180 ~~tm~-----V~~QV~V~g-~l-d~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         180 ADKWE-----VAWQVLVSG-NL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             TTTTE-----EEEEEEESS-CC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             cCCce-----EEEEeeeCC-Ch-hccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            77665     222222221 22 6799999999998876431               13333332               


Q ss_pred             --------ccccceeeeeec-cccceeEEEEEEcCcEEEEec-CCCeEEEEecCCCcce-------E--EeccccCCCcC
Q 018591          245 --------VEIVRWKLACET-KAHEMAVLCVCLVGEFLCSGS-ADKSIGIWKREAFGKL-------C--RVGAITGHEGP  305 (353)
Q Consensus       245 --------~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~-------~--~~~~~~~h~~~  305 (353)
                              ..... ...... .+....-..+++||+++++++ .+.++.++|++.....       .  ...+.. ..-.
T Consensus       253 gV~VVD~~~~~~~-~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglg  330 (459)
T d1fwxa2         253 GVKVVDGRKEASS-LFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG  330 (459)
T ss_dssp             TEEEEECSGG--C-SSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSC
T ss_pred             CceeecccccCCc-ceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcC
Confidence                    11000 000000 001111246677888776655 6999999998642210       0  001111 1223


Q ss_pred             eEEEEeecCCCCCCeEEEEccCCCeEEEEEcC
Q 018591          306 VKCLQASPNAVGGGFLLYSGSLDKSLRVWWVS  337 (353)
Q Consensus       306 v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~  337 (353)
                      -..-+|+..    |....|---|..|.-|++.
T Consensus       331 PLht~fd~~----g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         331 PLHTAFDGR----GNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEEEECTT----SEEEEEETTTTEEEEEEHH
T ss_pred             ccccccCCC----ceEEEEeeccceEEEEecc
Confidence            456678887    8888888899999999985

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=95.62  E-value=0.27  Score=36.31  Aligned_cols=224  Identities=13%  Similarity=0.129  Sum_probs=110.3

Q ss_pred             ceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591           56 DGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT  135 (353)
Q Consensus        56 ~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  135 (353)
                      ...|..++--..+.+... ||.|..|-.+...+.-      .+.                          .....|..+.
T Consensus        25 ~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG------~~~--------------------------~~~~~v~~v~   71 (273)
T d1jtdb_          25 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT------MPA--------------------------ATQSGVDAIA   71 (273)
T ss_dssp             SSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS------CCG--------------------------GGGSCCCEEE
T ss_pred             CCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCcee------eee--------------------------cccccceEEe
Confidence            345777776655555555 8999999765543110      000                          1122344444


Q ss_pred             EeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCc
Q 018591          136 VYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDV  215 (353)
Q Consensus       136 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  215 (353)
                      .-....+.- .|+.+..|.....-...........+..++......+.. .|+.+..|.......     . ........
T Consensus        72 ~G~~~~~al-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~-----~-~~~~~~~~  143 (273)
T d1jtdb_          72 AGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQ-----T-TVPAEAQS  143 (273)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTST-----T-SCCGGGGS
T ss_pred             cCCCceeee-eeeeeeccCCCcceeeccccccccceeEEeeeccccccc-ccccceecccCCCCc-----e-eeeccCCc
Confidence            433222222 479999998643222111111233455565544443333 489999997544321     1 11111111


Q ss_pred             eeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCCeEEEEecCCCcceEE
Q 018591          216 SLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADKSIGIWKREAFGKLCR  295 (353)
Q Consensus       216 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  295 (353)
                      .+..++-.  . +......++.+..|-.......    .........+..++....+.+.-. ||.|+-|=.....+.  
T Consensus       144 ~v~~~~~~--~-~~~~~~~~g~~~~~G~~~~g~~----~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql--  213 (273)
T d1jtdb_         144 GVTALDGG--V-YTALAVKNGGVIAWGDNYFGQT----TVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQT--  213 (273)
T ss_dssp             SEEEEEEC--S-SEEEEEETTEEEEEECCTTSTT----SCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTT--
T ss_pred             eEEEEecc--c-eeeeeecccceeEeecccCCcc----cccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCcc--
Confidence            12333322  2 2222334677888865443111    111122345677776544444333 799999965443321  


Q ss_pred             eccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCC
Q 018591          296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSK  338 (353)
Q Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  338 (353)
                       .........|..|+-...     ..++.  .||.|..|--..
T Consensus       214 -~~~~~~~~~v~~I~~G~~-----~~~~l--~~g~v~~WG~~~  248 (273)
T d1jtdb_         214 -TVPTEALSGVSAIASGEW-----YSLAL--KNGKVIAWGSSR  248 (273)
T ss_dssp             -CCCGGGGSSCCEEEECSS-----CEEEE--ETTEEEEESTTC
T ss_pred             -CCCccCCCCcEEEEeCcc-----eEEEE--ECCEEEEECCCC
Confidence             111112345777776654     33444  389999996443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.55  E-value=0.51  Score=39.02  Aligned_cols=200  Identities=15%  Similarity=0.078  Sum_probs=110.5

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccC-----------cceEEEEEeCCeEEEEcCCCcEEEEeCCCCCccccccee
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHD-----------DAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSLKG  207 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  207 (353)
                      +.++.++.++.|.-.|.++++.+.++....           ..-..++..++.++.+..++.|.-.|..+++     +..
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~-----~~w  141 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGK-----AIW  141 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCC-----EEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCc-----EEe
Confidence            677888888999999999999988763211           1112333456688889999999999999987     333


Q ss_pred             eeeccCCceeeEEEEcC--CCCeEEeec------CCCcEEEeeccccccceeeeeecccc--------------------
Q 018591          208 ILEGHKDVSLNSVVVSD--DGKWVYGGG------SDGFVMGWEGNVEIVRWKLACETKAH--------------------  259 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~--------------------  259 (353)
                      ............+.-.|  ....++.+.      ..|.|.-+|.++++..++........                    
T Consensus       142 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  221 (560)
T d1kv9a2         142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (560)
T ss_dssp             EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence            22221110001111111  122333332      23679999999998777654321110                    


Q ss_pred             ------ce---eEEEEEEcCcEEEEecC-------------------CCeEEEEecCCCcceEEeccccCCCc-------
Q 018591          260 ------EM---AVLCVCLVGEFLCSGSA-------------------DKSIGIWKREAFGKLCRVGAITGHEG-------  304 (353)
Q Consensus       260 ------~~---~v~~~~~~~~~l~~~~~-------------------dg~i~iw~~~~~~~~~~~~~~~~h~~-------  304 (353)
                            ..   ...++.+...++..+..                   ...|.-.|+++++.....+. ..|..       
T Consensus       222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~-~~~D~wd~d~~~  300 (560)
T d1kv9a2         222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV-TPGDSWDFTATQ  300 (560)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCSCCCCCS
T ss_pred             cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEec-cccccccccccc
Confidence                  00   11334444444433221                   23566678888774333222 12221       


Q ss_pred             CeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcccc
Q 018591          305 PVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTSDS  345 (353)
Q Consensus       305 ~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  345 (353)
                      ...-+....+. ...+.++.++.+|.+.++|..+++.+...
T Consensus       301 ~~~l~~~~~~g-~~~~~v~~~~k~G~~~~lDr~tG~~i~~~  340 (560)
T d1kv9a2         301 QITLAELNIDG-KPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (560)
T ss_dssp             CEEEEEEEETT-EEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeeeeeeecCC-ceeeeeeecCccceEEEEecCCCcccccc
Confidence            11111122220 01357888999999999999999876543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.89  E-value=0.45  Score=34.74  Aligned_cols=55  Identities=5%  Similarity=-0.114  Sum_probs=34.1

Q ss_pred             CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCCCCcc
Q 018591          279 DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQSSTS  343 (353)
Q Consensus       279 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~  343 (353)
                      ...|.++|+.+.+. ..+.   .+. ......|+||    |+.|+.. .++.|.++|+.+++...
T Consensus       213 ~~~l~~~d~~g~~~-~~lt---~~~-~~~~~~~SpD----G~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         213 FGQIYSTDLDGKDL-RKHT---SFT-DYYPRHLNTD----GRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             SCEEEEEETTSCSC-EECC---CCC-SSCEEEEEES----SSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             ccceEEEeCCCCce-EEee---cCC-CcccccCcCC----CCEEEEE-eCCEEEEEECCCCCEEE
Confidence            34677788876542 2222   121 1223468999    7777654 46789999998876544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.62  Score=36.09  Aligned_cols=101  Identities=7%  Similarity=0.060  Sum_probs=65.1

Q ss_pred             ceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcccccc-eee
Q 018591          130 SISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSHCHSL-KGI  208 (353)
Q Consensus       130 ~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~  208 (353)
                      .|..++|+.+.+++.. ++.+..++...-........-..++..+.+.++.++....++.+.++++.+.+...... ...
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~  166 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTS  166 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEE
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcce
Confidence            5788999887766654 45688888765443333333456788888888888888889999999998876211000 001


Q ss_pred             eeccCCceeeEEEEcCCCCeEEeec
Q 018591          209 LEGHKDVSLNSVVVSDDGKWVYGGG  233 (353)
Q Consensus       209 ~~~~~~~~v~~~~~~~~~~~l~~~~  233 (353)
                      +... .. +.+++|++.++.++++.
T Consensus       167 ~~~~-~~-~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         167 FDVT-NS-QLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEC-SS-EEEEEETTSCEEEEEEE
T ss_pred             EEec-CC-ceEEEEeCCcEEEEEeC
Confidence            1111 22 36777877777777763

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.53  Score=34.67  Aligned_cols=70  Identities=20%  Similarity=0.271  Sum_probs=37.0

Q ss_pred             CCCeEEeecCCC-----cEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCCC-----eEEEEecCCCcceE
Q 018591          225 DGKWVYGGGSDG-----FVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSADK-----SIGIWKREAFGKLC  294 (353)
Q Consensus       225 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~  294 (353)
                      +++.++.|+.++     ....+|..+..  +..............+...++++++.|+.++     .+.+||+.+. ...
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~-~W~  271 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETET--WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD-TWS  271 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT-EEE
T ss_pred             eeeEEEecCccccccccceeeeeeccee--eecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC-EEE
Confidence            345556655442     45666666542  2222222222222344456788888887554     3788998874 333


Q ss_pred             Eec
Q 018591          295 RVG  297 (353)
Q Consensus       295 ~~~  297 (353)
                      .+.
T Consensus       272 ~~~  274 (288)
T d1zgka1         272 EVT  274 (288)
T ss_dssp             EEE
T ss_pred             ECC
Confidence            443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.53  E-value=0.71  Score=35.33  Aligned_cols=192  Identities=17%  Similarity=0.127  Sum_probs=109.4

Q ss_pred             CeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEEEe------CC--eEEEEc-C-C--CcEEEEeCCCCCcccccce
Q 018591          139 GLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLVAS------KG--IVYSAS-A-D--GKIKAWGKELGKSHCHSLK  206 (353)
Q Consensus       139 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~------~~--~l~~~~-~-d--g~i~iwd~~~~~~~~~~~~  206 (353)
                      .+++.....+-|++||+ +|+.+..+.  .+.++.+...      ++  .++.++ . +  .+|.+|.+.....    ..
T Consensus        41 SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~----~l  113 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG----TL  113 (353)
T ss_dssp             CEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT----EE
T ss_pred             cEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc----cc
Confidence            56666677777999998 488887764  4566666652      11  244444 2 2  3577887753321    11


Q ss_pred             eeeec-------cCCceeeEEEE--cCC-CC-eEEeecCCCcEEEeecccc---ccceeeeeeccccceeEEEEEEc--C
Q 018591          207 GILEG-------HKDVSLNSVVV--SDD-GK-WVYGGGSDGFVMGWEGNVE---IVRWKLACETKAHEMAVLCVCLV--G  270 (353)
Q Consensus       207 ~~~~~-------~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~v~~~~~~--~  270 (353)
                      ..+..       .... +..+|+  ++. +. ++++...+|.+..|.+...   ....+....+.... .+-.+..|  .
T Consensus       114 ~~~~~~~~p~~~~~~~-vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~-q~EGCVvDde~  191 (353)
T d1h6la_         114 QSITDPNRPIASAIDE-VYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS-QTEGMAADDEY  191 (353)
T ss_dssp             EECSCSSSCEECSSSS-CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS-CEEEEEEETTT
T ss_pred             ccccccccccccccCc-ceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC-ccceEEEeCCC
Confidence            11111       0111 255565  664 43 5677788999998877432   22233444443322 34444444  5


Q ss_pred             cEEEEecCCCeEEEEecCCC--cceEEecccc--CCCcCeEEEEeecCCCCCCeEEEEccCCCeEEEEEcCCC
Q 018591          271 EFLCSGSADKSIGIWKREAF--GKLCRVGAIT--GHEGPVKCLQASPNAVGGGFLLYSGSLDKSLRVWWVSKQ  339 (353)
Q Consensus       271 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~  339 (353)
                      ..|+.+-.+.-|..++.+..  .....+....  ...+.+-.|+.-....++|-+|+|.-.|++..+|+....
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            68888888776766665422  2222222221  235567777766543333677777777899999998764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.93  Score=35.07  Aligned_cols=69  Identities=13%  Similarity=0.181  Sum_probs=50.5

Q ss_pred             ceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCc
Q 018591           18 SVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSS   87 (353)
Q Consensus        18 ~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~   87 (353)
                      .|..++|+++.|+... ++.+..++..+-........-..++..+.+....++....+|.+.++++....
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~  156 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS  156 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCc
Confidence            5899999977776654 45688888665444444333345678888888888888888999999988765

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=93.22  E-value=1.1  Score=32.87  Aligned_cols=223  Identities=13%  Similarity=0.125  Sum_probs=105.4

Q ss_pred             cCceEEEEECCcEEEEEeCCCcEEEEeCCCceeeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEcccCccceeEEee
Q 018591           16 VGSVSSLALCGEFILSASQGKDIIVWQQPDLRMFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKVSRSSENVFRLVD   95 (353)
Q Consensus        16 ~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~   95 (353)
                      ...|..|+-.....+.-. ||.|..|-....-.+-.-......|..+..-..+.+.- .||.+..|..........    
T Consensus        25 ~~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~----   98 (273)
T d1jtdb_          25 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTV----   98 (273)
T ss_dssp             SSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCC----
T ss_pred             CCCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeecc----
Confidence            356888887644444444 89999997544322211112234455555443333333 489999998654321100    


Q ss_pred             ccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeeeeccccCcceEEEE
Q 018591           96 TLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLESIKAHDDAVNGLV  175 (353)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~  175 (353)
                        +.                          .....+..+.......+.. .|+.+..|.................|..++
T Consensus        99 --~~--------------------------~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~  149 (273)
T d1jtdb_          99 --PA--------------------------EARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALD  149 (273)
T ss_dssp             --CG--------------------------GGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred             --cc--------------------------ccccceeEEeeeccccccc-ccccceecccCCCCceeeeccCCceEEEEe
Confidence              00                          1112233344444333322 478899997543222221112234455554


Q ss_pred             EeCCeEEEEcCCCcEEEEeCCCCCcccccceeeeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccceeeeee
Q 018591          176 ASKGIVYSASADGKIKAWGKELGKSHCHSLKGILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVRWKLACE  255 (353)
Q Consensus       176 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  255 (353)
                      -....++ ...++.++.|-.....+     ......... .|..++....  +.+.- .||.|+.|=...........  
T Consensus       150 ~~~~~~~-~~~~g~~~~~G~~~~g~-----~~~~~~~~~-~v~~Is~G~~--h~~~l-~dG~v~~WG~n~~Gql~~~~--  217 (273)
T d1jtdb_         150 GGVYTAL-AVKNGGVIAWGDNYFGQ-----TTVPAEAQS-GVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPT--  217 (273)
T ss_dssp             ECSSEEE-EEETTEEEEEECCTTST-----TSCCGGGSS-SEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCG--
T ss_pred             ccceeee-eecccceeEeecccCCc-----ccccccccC-Cccceeccce--eeEEE-ecCcEEEcCCCCCCccCCCc--
Confidence            4333333 34578898886654331     111111112 2356655433  22222 37888888543321111111  


Q ss_pred             ccccceeEEEEEEcCcEEEEecCCCeEEEEecC
Q 018591          256 TKAHEMAVLCVCLVGEFLCSGSADKSIGIWKRE  288 (353)
Q Consensus       256 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~iw~~~  288 (353)
                        .....+..++....+.+.- .||.|..|-..
T Consensus       218 --~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~~  247 (273)
T d1jtdb_         218 --EALSGVSAIASGEWYSLAL-KNGKVIAWGSS  247 (273)
T ss_dssp             --GGGSSCCEEEECSSCEEEE-ETTEEEEESTT
T ss_pred             --cCCCCcEEEEeCcceEEEE-ECCEEEEECCC
Confidence              1112344555443333332 48999999644

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.00  E-value=1.4  Score=33.63  Aligned_cols=140  Identities=15%  Similarity=0.207  Sum_probs=76.8

Q ss_pred             cEEEEEcCC-ceeeeecccc-------CcceEEEEE--eC--C--eEEEEcCCCcEEEEeCCCCCc--ccccceeeeecc
Q 018591          149 TLKVWRVAD-LKCLESIKAH-------DDAVNGLVA--SK--G--IVYSASADGKIKAWGKELGKS--HCHSLKGILEGH  212 (353)
Q Consensus       149 ~v~iwd~~~-~~~~~~~~~~-------~~~v~~i~~--~~--~--~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~  212 (353)
                      .|.+|.+.. ...+..+...       ...+..+|+  ++  +  ++++...+|.+..|.+.....  ......+.+...
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            577787642 2223333211       224667776  22  2  567778899999887743221  122233444433


Q ss_pred             CCceeeEEEEcCCCCeEEeecCCCcEEEeeccccccc-eeeeeeccc--cceeE--EEEEE--c--CcEEEEecCCCeEE
Q 018591          213 KDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIVR-WKLACETKA--HEMAV--LCVCL--V--GEFLCSGSADKSIG  283 (353)
Q Consensus       213 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~--~~~~v--~~~~~--~--~~~l~~~~~dg~i~  283 (353)
                      .  .+..+.+.+....|+.+-++.-+..++....... ........+  ....+  .++-.  +  |-+|++.-.+++..
T Consensus       180 ~--q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         180 S--QTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             S--CEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             C--ccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            3  2488999999889999988776666665432111 111111111  11122  23322  2  44566666789999


Q ss_pred             EEecCCC
Q 018591          284 IWKREAF  290 (353)
Q Consensus       284 iw~~~~~  290 (353)
                      +||....
T Consensus       258 vydr~~~  264 (353)
T d1h6la_         258 IYERQGQ  264 (353)
T ss_dssp             EEESSTT
T ss_pred             EEecCCC
Confidence            9998764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=1.2  Score=32.53  Aligned_cols=106  Identities=12%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             CCeEEeecCC-----CcEEEeeccccccceeeeeeccccceeEEEEEEcCcEEEEecCC-----CeEEEEecCCCcceEE
Q 018591          226 GKWVYGGGSD-----GFVMGWEGNVEIVRWKLACETKAHEMAVLCVCLVGEFLCSGSAD-----KSIGIWKREAFGKLCR  295 (353)
Q Consensus       226 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~  295 (353)
                      +..++.|+.+     ..+..||......  ...................+.+++.|+.+     .....+|..+.+ ...
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~-~~~  225 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEW--RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET-WTF  225 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-EEE
T ss_pred             ecceEecCcccccccceEEEeecccccc--ccccccccccccccccceeeeEEEecCccccccccceeeeeeccee-eec
Confidence            4455555443     3467777766521  11111111111222333456666666544     346677776643 222


Q ss_pred             eccccCCCcCeEEEEeecCCCCCCeEEEEccCCC-----eEEEEEcCCCC
Q 018591          296 VGAITGHEGPVKCLQASPNAVGGGFLLYSGSLDK-----SLRVWWVSKQS  340 (353)
Q Consensus       296 ~~~~~~h~~~v~~~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~  340 (353)
                      +.....-.... +++. .+    +++++.|+.++     .|.+||+++.+
T Consensus       226 ~~~~p~~r~~~-~~~~-~~----~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         226 VAPMKHRRSAL-GITV-HQ----GRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCCSSCCBSC-EEEE-ET----TEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccCccCcccce-EEEE-EC----CEEEEEecCCCCeecceEEEEECCCCE
Confidence            22221111111 2222 34    78888887654     37888888753

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=2.7  Score=32.46  Aligned_cols=254  Identities=12%  Similarity=0.038  Sum_probs=133.0

Q ss_pred             cCceEEEEECCcEEEEEeCCCcEEEEeCCC-ce-----------eeEEeccCceeeEEEEEeCCEEEEecCCCcEEEEEc
Q 018591           16 VGSVSSLALCGEFILSASQGKDIIVWQQPD-LR-----------MFTKFGHGDGSVKAVVTVGNKVFTAHQDSRIRVWKV   83 (353)
Q Consensus        16 ~~~v~~~~~~~~~l~s~~~dg~v~vwd~~~-~~-----------~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~~w~~   83 (353)
                      ...|..|+..+...+.-..||.|..|=... ++           ...........|..++......+....+|.+..|-.
T Consensus        46 ~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~  125 (401)
T d1a12a_          46 PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS  125 (401)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecccccceeeccccccceeccc
Confidence            356888888767777778899999995322 11           111111123456666666677777888999999975


Q ss_pred             ccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEEEeCCeEEEecCCCcEEEEEcCCceeee-
Q 018591           84 SRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRVADLKCLE-  162 (353)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-  162 (353)
                      .......  ........                 .............|..++......+.-..+|.+..|-....-.+. 
T Consensus       126 ~~~~~~~--~~~~~~~~-----------------~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~  186 (401)
T d1a12a_         126 FRDNNGV--IGLLEPMK-----------------KSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR  186 (401)
T ss_dssp             EEETTEE--EESSBBTB-----------------CEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred             ccccccc--ccccCCcc-----------------ccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCC
Confidence            4322100  00000000                 000111123345667777666666667788999999754311000 


Q ss_pred             ----------------------ec-----cccCcceEEEEEeCCeEEEEcCCCcEEEEeCCCCCcc------cccceeee
Q 018591          163 ----------------------SI-----KAHDDAVNGLVASKGIVYSASADGKIKAWGKELGKSH------CHSLKGIL  209 (353)
Q Consensus       163 ----------------------~~-----~~~~~~v~~i~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~  209 (353)
                                            ..     ......+..++......+.-..+|.+..|........      ........
T Consensus       187 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~  266 (401)
T d1a12a_         187 VPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNL  266 (401)
T ss_dssp             CGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEEC
T ss_pred             CCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceecccc
Confidence                                  00     0012345666665666666778899999965432110      00000000


Q ss_pred             eccCCceeeEEEEcCCCCeEEeecCCCcEEEeecccccc--------ceeeeeeccccceeEEEEEEcCcEEEEecCCCe
Q 018591          210 EGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGNVEIV--------RWKLACETKAHEMAVLCVCLVGEFLCSGSADKS  281 (353)
Q Consensus       210 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~  281 (353)
                      ..........+.........++-..+|.+..|.-.....        ......... ....|..++.-..+.++-..||.
T Consensus       267 ~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~-~~~~i~~Is~G~~hs~alt~dG~  345 (401)
T d1a12a_         267 TSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACGASVGYAVTKDGR  345 (401)
T ss_dssp             GGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEECSSEEEEEETTSC
T ss_pred             ccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcC-CCCCeEEEEeeCCEEEEEeCCCe
Confidence            110111112233334445666677788898886433110        001111111 12357777776667677788999


Q ss_pred             EEEEecCC
Q 018591          282 IGIWKREA  289 (353)
Q Consensus       282 i~iw~~~~  289 (353)
                      |+.|=...
T Consensus       346 v~~WG~n~  353 (401)
T d1a12a_         346 VFAWGMGT  353 (401)
T ss_dssp             EEEEECCT
T ss_pred             EEEEecCC
Confidence            99996544

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.76  E-value=3.6  Score=28.59  Aligned_cols=155  Identities=10%  Similarity=0.103  Sum_probs=85.2

Q ss_pred             eeeEEEEEe-CCEEEEecCCCcEEEEEcccCccceeEEeeccccccceeeeecccceeEeecccceeeeeecCCceEEEE
Q 018591           57 GSVKAVVTV-GNKVFTAHQDSRIRVWKVSRSSENVFRLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLT  135 (353)
Q Consensus        57 ~~v~~~~~~-~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  135 (353)
                      -.|.+++.+ .+..++|+......+|-++.+.......+..+....+                       -...-|..+.
T Consensus       104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtD-----------------------I~~d~I~G~g  160 (313)
T d2hu7a1         104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSD-----------------------IRGDLIAGLG  160 (313)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEE-----------------------EETTEEEEEE
T ss_pred             EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEe-----------------------ccCCeEEEEe
Confidence            567788887 5677788888899999999887433333322211100                       1233444444


Q ss_pred             EeC---CeEEEecC-CCcEEEEEcCCceeeeeccccCcceEEEEEeCCeEEEEcC---CCcEEEEeCCCCCccccc-cee
Q 018591          136 VYN---GLIYSGSW-DKTLKVWRVADLKCLESIKAHDDAVNGLVASKGIVYSASA---DGKIKAWGKELGKSHCHS-LKG  207 (353)
Q Consensus       136 ~~~---~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~-~~~  207 (353)
                      +..   .-++++.. .|.+++++...+..-.........|          ++.-.   +.....+|+++++..... +..
T Consensus       161 ~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV----------~sdyEt~gEsywit~D~~s~~yerve~P~k  230 (313)
T d2hu7a1         161 FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV----------TAGLETAREARLVTVDPRDGSVEDLELPSK  230 (313)
T ss_dssp             EEETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCE----------EEEEEESSCEEEEEECTTTCCEEECCCSSC
T ss_pred             eecCCcceEEEEecccCCEEEecCCCCcccceeEccCcee----------eeccCCCCceEEEEEecccCceeeeecCcc
Confidence            432   33555554 7778887766554433332222223          22211   112224577766521111 111


Q ss_pred             eeeccCCceeeEEEEcCCCCeEEeecCCCcEEEeecc
Q 018591          208 ILEGHKDVSLNSVVVSDDGKWVYGGGSDGFVMGWEGN  244 (353)
Q Consensus       208 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  244 (353)
                      .+.......|.-+-+.|++++++.+-.||.-.+|.-.
T Consensus       231 d~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~nG  267 (313)
T d2hu7a1         231 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDG  267 (313)
T ss_dssp             HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETT
T ss_pred             cceeecceEEEeeeeCCCCcEEEEEecCCchheeecc
Confidence            1222223234567799999998999999999988643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.98  E-value=5.6  Score=30.02  Aligned_cols=147  Identities=13%  Similarity=-0.008  Sum_probs=72.0

Q ss_pred             CCcEEEEeCCCCCcccccceeeeec---cCCceeeEEEE--cCCCC-eEEee---cCCCcEEEeeccccccceeeeeecc
Q 018591          187 DGKIKAWGKELGKSHCHSLKGILEG---HKDVSLNSVVV--SDDGK-WVYGG---GSDGFVMGWEGNVEIVRWKLACETK  257 (353)
Q Consensus       187 dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~--~~~~~-~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~  257 (353)
                      .|.|.++|+.+.......+...-..   ..-.+ ..+.+  .+++. +|++.   ....+|.+|++..............
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~P-hGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~  145 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNP-HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  145 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCE-EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceec-cceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecC
Confidence            4889999988765322111111000   00112 33333  44555 34443   3456788888765533333322222


Q ss_pred             ccc-eeEEEE--EEcCcEEEEec--C-------------CCeEEEEecCCCcceEEeccccCCCcCeEEEEeecCCCCCC
Q 018591          258 AHE-MAVLCV--CLVGEFLCSGS--A-------------DKSIGIWKREAFGKLCRVGAITGHEGPVKCLQASPNAVGGG  319 (353)
Q Consensus       258 ~~~-~~v~~~--~~~~~~l~~~~--~-------------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  319 (353)
                      ... .....+  ..++.+++|-.  .             -+...+|..+.++. ..+.   ..-...+.|+++|+    +
T Consensus       146 ~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~---~~l~~pNGI~~s~d----~  217 (340)
T d1v04a_         146 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVA---EGFDFANGINISPD----G  217 (340)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEE---EEESSEEEEEECTT----S
T ss_pred             CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEc---CCCCccceeEECCC----C
Confidence            211 122233  23466666621  1             12233343333321 1221   12346789999999    6


Q ss_pred             eEE-EEccCCCeEEEEEcCCCCCc
Q 018591          320 FLL-YSGSLDKSLRVWWVSKQSST  342 (353)
Q Consensus       320 ~~l-~s~~~dg~i~iw~~~~~~~~  342 (353)
                      ++| ++-+..++|++|++.....+
T Consensus       218 ~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         218 KYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CEEEEEeCCCCeEEEEEeCCCccc
Confidence            544 55566789999999865543