Citrus Sinensis ID: 018593

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MGFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN
cccccHHHHHHHHHcccHHHHHHHHcccHHHHHHHccHHHHHHHHcccccccEEEEEEccccccccEEEcccccccEEccccccccccEEEEEEccEEEEEEcccccEEEEEccccccEEEccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEcccccEEEccccccccEEEEEccccEEEEccEEEEEEccccEEEEEEccccEEEEEcccccccccccEEEEEEccEEEEEEEcccEEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEcccEEEEEEccEEEEEEccccEEEEEEcccccccccccEEEEEEEEcccccc
cccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEEEccccccccccccccccccccccccccccEEEEEcccEEEEEEEcccccEEEEEccccccEEEcccccccccccccccccEEEEEEcEccccccEEEEEEEEccccccccccEEEEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEEEccccEEEEEEccccEEEEEccccccccccEEEEEEEcEEEEEEEccccEEEEEEEEccccccEEEEEEEcccccccccccEEEEcccccEEEEEcccEEEEEEccccEEEEEEEEccccccccccccEEEEccccccc
MGFFPDEVIQQILARlpvkslfrTKTVCKLWNKLTSDKYFIRLYNevssknpmLLVQISDLieskgvicvdnwrgVTEISLDFLHDRVKVRAScngllccssipemgvyyvcnpmtrewkllpksrerpvtrfypdgeATLVGLACDLAKNKYNVVLAGYhrafghrpdgtfkclvfdsesnrwrkfVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEgdvwrkislpdkvgsesrSYLLECDGCLSVIEISDEWMETWVLKDyyrdewhsvdKVSLRCikgmvpsifpisqtREYVFLATHKQVLVYHRNGRLWKEMYSVkygstlplwfsAHAFRSTILSCN
MGFFPDEVIQQIlarlpvkslfrtktvcklwnkltsdkYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRafghrpdgTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN
MGFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN
***FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTIL***
MGFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSC*
MGFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN
*GFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKVGSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
Q9FGY4359 F-box protein At5g49610 O yes no 0.988 0.972 0.691 1e-144
Q9LPW2416 Putative F-box/kelch-repe no no 0.756 0.641 0.265 3e-17
Q9C800441 Putative F-box protein At no no 0.657 0.526 0.291 5e-16
Q9LPW4462 Putative F-box protein At no no 0.767 0.586 0.248 1e-13
Q9ZPS1334 Putative F-box protein At no no 0.705 0.745 0.25 7e-13
Q0WRU9405 F-box/kelch-repeat protei no no 0.589 0.513 0.262 4e-12
Q9SAF4435 Putative F-box/kelch-repe no no 0.750 0.609 0.240 5e-12
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.951 0.813 0.248 1e-11
Q9FVV8392 Putative F-box protein At no no 0.793 0.714 0.257 7e-11
Q8S8Q9420 F-box/LRR-repeat protein no no 0.841 0.707 0.244 4e-10
>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 Back     alignment and function desciption
 Score =  510 bits (1314), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/356 (69%), Positives = 289/356 (81%), Gaps = 7/356 (1%)

Query: 2   GFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDL 61
             FPDEVI QILARLPVKSLFR K+VCK W +L SDKYF  L+N++S K  +L+ ++SD 
Sbjct: 7   ALFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLVAEVSD- 65

Query: 62  IESKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKL 121
             S  +ICVDN RGV+E+SLDF+ DRV++R S NGLLCCSSIPE GVYYVCNP TRE++ 
Sbjct: 66  --SSSLICVDNLRGVSELSLDFVRDRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREYRK 123

Query: 122 LPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSES 181
           LPKSRERPVTRFYPDGEATLVGLACDL+KNK+NVVLAGYHR+FG RPDG+F CLVFDSES
Sbjct: 124 LPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFICLVFDSES 183

Query: 182 NRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKV- 240
           N+WRKFVSV +   F+ M++NQVVFVNG LHWL     +ILALD+E DVWRKISLPD++ 
Sbjct: 184 NKWRKFVSVLEECSFTHMSKNQVVFVNGMLHWLMSGLCYILALDVEHDVWRKISLPDEIR 243

Query: 241 ---GSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIF 297
              G  +R YLLE DG LSVI++SD WM+ W + +Y  + W  VD +SLRCIKG+VP IF
Sbjct: 244 IGNGGGNRVYLLESDGFLSVIQLSDVWMKIWKMSEYETETWSVVDSISLRCIKGLVPGIF 303

Query: 298 PISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN 353
           PI QT EYVFLATHKQVLVY R  +LWKEM+SVK  S+LPLWFSAHAFRSTI+ CN
Sbjct: 304 PICQTGEYVFLATHKQVLVYQRRSKLWKEMFSVKGSSSLPLWFSAHAFRSTIVPCN 359

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1 Back     alignment and function description
>sp|Q9LPW4|FB7_ARATH Putative F-box protein At1g12855 OS=Arabidopsis thaliana GN=At1g12855 PE=4 SV=1 Back     alignment and function description
>sp|Q9ZPS1|FB94_ARATH Putative F-box protein At2g02030 OS=Arabidopsis thaliana GN=At2g02030 PE=4 SV=1 Back     alignment and function description
>sp|Q0WRU9|FBK44_ARATH F-box/kelch-repeat protein At2g43445 OS=Arabidopsis thaliana GN=At2g43445 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAF4|FBK3_ARATH Putative F-box/kelch-repeat protein At1g13200 OS=Arabidopsis thaliana GN=At1g13200 PE=4 SV=1 Back     alignment and function description
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9FVV8|FB87_ARATH Putative F-box protein At1g71320 OS=Arabidopsis thaliana GN=At1g71320 PE=4 SV=1 Back     alignment and function description
>sp|Q8S8Q9|FBL40_ARATH F-box/LRR-repeat protein At2g43260 OS=Arabidopsis thaliana GN=At2g43260 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
357448815361 F-box protein [Medicago truncatula] gi|2 0.994 0.972 0.764 1e-154
217071782361 unknown [Medicago truncatula] 0.994 0.972 0.761 1e-153
224112022359 f-box family protein [Populus trichocarp 0.994 0.977 0.732 1e-153
356529089372 PREDICTED: F-box protein At5g49610-like 0.994 0.943 0.749 1e-151
356555975359 PREDICTED: LOW QUALITY PROTEIN: F-box pr 0.991 0.974 0.743 1e-149
388507014360 unknown [Lotus japonicus] 0.994 0.975 0.721 1e-147
225432041357 PREDICTED: F-box protein At5g49610-like 0.994 0.983 0.712 1e-145
21536524359 unknown [Arabidopsis thaliana] 0.988 0.972 0.691 1e-142
15240516359 F-box protein [Arabidopsis thaliana] gi| 0.988 0.972 0.691 1e-142
297795719358 F-box family protein [Arabidopsis lyrata 0.988 0.974 0.687 1e-141
>gi|357448815|ref|XP_003594683.1| F-box protein [Medicago truncatula] gi|217074110|gb|ACJ85415.1| unknown [Medicago truncatula] gi|355483731|gb|AES64934.1| F-box protein [Medicago truncatula] Back     alignment and taxonomy information
 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/356 (76%), Positives = 309/356 (86%), Gaps = 5/356 (1%)

Query: 2   GFFPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISD- 60
           G FPDEV+ QILARLPVKSLFR+KTVCKLW +LT DKYFI+LYN+VS KNPM+LV+ISD 
Sbjct: 7   GIFPDEVVMQILARLPVKSLFRSKTVCKLWYRLTLDKYFIQLYNDVSRKNPMILVEISDS 66

Query: 61  LIESKG-VICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREW 119
           L+ESK  +ICVDN RGV E SL+FL+DRVKVRASCNGLLCCSSIP+MGVYYVCNP+TRE+
Sbjct: 67  LLESKSSLICVDNLRGVFEFSLNFLNDRVKVRASCNGLLCCSSIPDMGVYYVCNPVTREF 126

Query: 120 KLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDS 179
           +LLPKSRERPVTRFYPDGEATLVGLACD A  K+NVVLAG HR FGHRPDG F CLVFDS
Sbjct: 127 RLLPKSRERPVTRFYPDGEATLVGLACDSAFQKFNVVLAGSHRTFGHRPDGKFICLVFDS 186

Query: 180 ESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLP-D 238
           E N+WRK +S QD + F+ MN+NQVVFVN ALHWLT S S+IL LDL  D+WRK+SLP D
Sbjct: 187 ELNKWRKLISFQDEH-FTHMNKNQVVFVNNALHWLTVSSSYILVLDLSCDIWRKMSLPYD 245

Query: 239 KV-GSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIF 297
            + G+ +R+YLLE DGCLSVI+IS+ WM  WVLKDY++DEW  VDKVSLRCI+GMVP IF
Sbjct: 246 PIYGAGNRTYLLELDGCLSVIQISEAWMVIWVLKDYWKDEWCIVDKVSLRCIRGMVPGIF 305

Query: 298 PISQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN 353
           PISQT EYVFLATHKQVLVY R  ++WKEMYSVKY STLPLWFSAHA+RST+ SCN
Sbjct: 306 PISQTTEYVFLATHKQVLVYQRRSQVWKEMYSVKYSSTLPLWFSAHAYRSTMFSCN 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|217071782|gb|ACJ84251.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224112022|ref|XP_002316055.1| f-box family protein [Populus trichocarpa] gi|222865095|gb|EEF02226.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356529089|ref|XP_003533129.1| PREDICTED: F-box protein At5g49610-like [Glycine max] Back     alignment and taxonomy information
>gi|356555975|ref|XP_003546303.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At5g49610-like [Glycine max] Back     alignment and taxonomy information
>gi|388507014|gb|AFK41573.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225432041|ref|XP_002273848.1| PREDICTED: F-box protein At5g49610-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|21536524|gb|AAM60856.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15240516|ref|NP_199772.1| F-box protein [Arabidopsis thaliana] gi|75262459|sp|Q9FGY4.1|FB341_ARATH RecName: Full=F-box protein At5g49610 gi|10177628|dbj|BAB10775.1| unnamed protein product [Arabidopsis thaliana] gi|109946405|gb|ABG48381.1| At5g49610 [Arabidopsis thaliana] gi|332008452|gb|AED95835.1| F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297795719|ref|XP_002865744.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297311579|gb|EFH42003.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
TAIR|locus:2157834359 AT5G49610 "AT5G49610" [Arabido 0.983 0.966 0.694 2.6e-134
TAIR|locus:2041016420 AT2G43260 [Arabidopsis thalian 0.869 0.730 0.268 2.1e-18
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.776 0.658 0.256 5e-18
TAIR|locus:2006902441 AT1G33530 "AT1G33530" [Arabido 0.708 0.566 0.312 6.5e-17
TAIR|locus:2032308392 AT1G71320 [Arabidopsis thalian 0.410 0.369 0.291 4.5e-12
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.606 0.501 0.234 4.3e-11
TAIR|locus:2124665367 AT4G10190 [Arabidopsis thalian 0.832 0.801 0.255 1.2e-10
TAIR|locus:2040829391 AT2G34280 "AT2G34280" [Arabido 0.422 0.381 0.295 2.1e-10
TAIR|locus:2142539445 AT5G10340 "AT5G10340" [Arabido 0.529 0.420 0.264 2.2e-10
TAIR|locus:2031845435 AT1G13200 "AT1G13200" [Arabido 0.546 0.443 0.270 5.5e-10
TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 246/354 (69%), Positives = 289/354 (81%)

Query:     4 FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIE 63
             FPDEVI QILARLPVKSLFR K+VCK W +L SDKYF  L+N++S K  +L+ ++SD   
Sbjct:     9 FPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLVAEVSD--- 65

Query:    64 SKGVICVDNWRGVTEISLDFLHDRVKVRASCNGLLCCSSIPEMGVYYVCNPMTREWKLLP 123
             S  +ICVDN RGV+E+SLDF+ DRV++R S NGLLCCSSIPE GVYYVCNP TRE++ LP
Sbjct:    66 SSSLICVDNLRGVSELSLDFVRDRVRIRVSSNGLLCCSSIPEKGVYYVCNPSTREYRKLP 125

Query:   124 KSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNR 183
             KSRERPVTRFYPDGEATLVGLACDL+KNK+NVVLAGYHR+FG RPDG+F CLVFDSESN+
Sbjct:   126 KSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFICLVFDSESNK 185

Query:   184 WRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSCSFILALDLEGDVWRKISLPDKV--- 240
             WRKFVSV +   F+ M++NQVVFVNG LHWL     +ILALD+E DVWRKISLPD++   
Sbjct:   186 WRKFVSVLEECSFTHMSKNQVVFVNGMLHWLMSGLCYILALDVEHDVWRKISLPDEIRIG 245

Query:   241 -GSESRSYLLECDGCLSVIEISDEWMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPI 299
              G  +R YLLE DG LSVI++SD WM+ W + +Y  + W  VD +SLRCIKG+VP IFPI
Sbjct:   246 NGGGNRVYLLESDGFLSVIQLSDVWMKIWKMSEYETETWSVVDSISLRCIKGLVPGIFPI 305

Query:   300 SQTREYVFLATHKQVLVYHRNGRLWKEMYSVKYGSTLPLWFSAHAFRSTILSCN 353
              QT EYVFLATHKQVLVY R  +LWKEM+SVK  S+LPLWFSAHAFRSTI+ CN
Sbjct:   306 CQTGEYVFLATHKQVLVYQRRSKLWKEMFSVKGSSSLPLWFSAHAFRSTIVPCN 359
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2041016 AT2G43260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006902 AT1G33530 "AT1G33530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032308 AT1G71320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124665 AT4G10190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040829 AT2G34280 "AT2G34280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142539 AT5G10340 "AT5G10340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031845 AT1G13200 "AT1G13200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGY4FB341_ARATHNo assigned EC number0.69100.98860.9721yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_X000584
f-box family protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 1e-11
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 1e-06
pfam0064648 pfam00646, F-box, F-box domain 2e-05
pfam1293747 pfam12937, F-box-like, F-box-like 2e-05
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 25/215 (11%)

Query: 93  SCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNK 152
            C+GL+C S         V NP T + + LP     P +R   + E+    L  D  + +
Sbjct: 3   PCDGLICFS---YGKRLVVWNPSTGQSRWLP----TPKSRRS-NKESDTYFLGYDPIEKQ 54

Query: 153 YNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALH 212
           Y V+   +    G+R     +  V+   SN WR       ++      +++ V +NG L+
Sbjct: 55  YKVL--CFSDRSGNRN--QSEHQVYTLGSNSWRTIECSPPHH----PLKSRGVCINGVLY 106

Query: 213 WL-----TDSCSFILALDLEGDVWRKISLPDKVGSESRSY--LLECDGCLSVI-EISD-E 263
           +L     T+   FI++ D+  + +++        S+S  Y  L+   G L+V+ +  D  
Sbjct: 107 YLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN 166

Query: 264 WMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFP 298
             + WVL D  + EW  +  V +  +  +V   F 
Sbjct: 167 NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFL 201

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PHA02713557 hypothetical protein; Provisional 99.69
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.68
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.64
PHA02713557 hypothetical protein; Provisional 99.62
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.62
PHA02790480 Kelch-like protein; Provisional 99.58
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.52
PHA03098534 kelch-like protein; Provisional 99.51
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.5
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.49
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.4
PLN02153341 epithiospecifier protein 99.39
PLN02193470 nitrile-specifier protein 99.36
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.32
PLN02193470 nitrile-specifier protein 99.31
PLN02153341 epithiospecifier protein 99.29
PHA02790480 Kelch-like protein; Provisional 99.29
PHA03098534 kelch-like protein; Provisional 99.27
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.17
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 99.05
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.04
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.0
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.89
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.81
KOG4693392 consensus Uncharacterized conserved protein, conta 98.56
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 98.43
KOG1230 521 consensus Protein containing repeated kelch motifs 98.34
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 98.31
KOG4693392 consensus Uncharacterized conserved protein, conta 98.28
KOG1230 521 consensus Protein containing repeated kelch motifs 98.18
KOG0281499 consensus Beta-TrCP (transducin repeats containing 98.05
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.59
PF1396450 Kelch_6: Kelch motif 97.24
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 97.21
KOG2997366 consensus F-box protein FBX9 [General function pre 96.97
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 96.91
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 96.75
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 96.67
COG3055381 Uncharacterized protein conserved in bacteria [Fun 96.54
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 96.09
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 95.98
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 95.72
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 95.5
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 95.39
PF07893 342 DUF1668: Protein of unknown function (DUF1668); In 95.2
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 95.14
PF1396450 Kelch_6: Kelch motif 95.1
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.91
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 94.89
KOG0310 487 consensus Conserved WD40 repeat-containing protein 94.7
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 94.48
smart00284255 OLF Olfactomedin-like domains. 94.43
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 94.15
smart0061247 Kelch Kelch domain. 94.02
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 93.38
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 92.93
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 92.82
smart0061247 Kelch Kelch domain. 92.7
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 92.31
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 92.01
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 91.89
PF1341549 Kelch_3: Galactose oxidase, central domain 91.5
PLN02772 398 guanylate kinase 91.44
KOG0316307 consensus Conserved WD40 repeat-containing protein 91.24
PRK04043419 tolB translocation protein TolB; Provisional 90.95
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 90.91
PF1341549 Kelch_3: Galactose oxidase, central domain 90.67
KOG2055 514 consensus WD40 repeat protein [General function pr 90.0
KOG2437 723 consensus Muskelin [Signal transduction mechanisms 89.8
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 89.46
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 88.74
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 88.69
COG3386 307 Gluconolactonase [Carbohydrate transport and metab 88.68
COG1520 370 FOG: WD40-like repeat [Function unknown] 88.45
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 88.45
COG3055381 Uncharacterized protein conserved in bacteria [Fun 88.24
KOG0299479 consensus U3 snoRNP-associated protein (contains W 88.01
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 86.31
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 86.19
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 84.86
PRK11028330 6-phosphogluconolactonase; Provisional 84.56
KOG4341483 consensus F-box protein containing LRR [General fu 83.93
PRK04792448 tolB translocation protein TolB; Provisional 83.47
KOG0289506 consensus mRNA splicing factor [General function p 82.22
KOG2445 361 consensus Nuclear pore complex component (sc Seh1) 81.51
COG4946 668 Uncharacterized protein related to the periplasmic 81.38
PRK00178430 tolB translocation protein TolB; Provisional 80.33
PF13013109 F-box-like_2: F-box-like domain 80.04
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=4.7e-32  Score=229.52  Aligned_cols=215  Identities=22%  Similarity=0.331  Sum_probs=159.3

Q ss_pred             eeecCeeEEeeecCCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCC
Q 018593           91 RASCNGLLCCSSIPEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDG  170 (353)
Q Consensus        91 ~~s~~Gll~~~~~~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  170 (353)
                      +++||||+|+..   ...++||||+||+++.||+++.+.    .......+ ++|+|+.++.|||+++...+  .  ...
T Consensus         1 ~~sCnGLlc~~~---~~~~~V~NP~T~~~~~LP~~~~~~----~~~~~~~~-~~G~d~~~~~YKVv~~~~~~--~--~~~   68 (230)
T TIGR01640         1 VVPCDGLICFSY---GKRLVVWNPSTGQSRWLPTPKSRR----SNKESDTY-FLGYDPIEKQYKVLCFSDRS--G--NRN   68 (230)
T ss_pred             CcccceEEEEec---CCcEEEECCCCCCEEecCCCCCcc----cccccceE-EEeecccCCcEEEEEEEeec--C--CCC
Confidence            478999999884   278999999999999999876531    11111123 89999999999999996422  1  113


Q ss_pred             cceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEE-EeeCCCCCCCC-
Q 018593          171 TFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWR-KISLPDKVGSE-  243 (353)
Q Consensus       171 ~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~-~~~~P~~~~~~-  243 (353)
                      ...++||++++++||.+.   .. +........+|++||.+||++...     ..|++||+.+|+|+ .+++|...... 
T Consensus        69 ~~~~~Vys~~~~~Wr~~~---~~-~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~  144 (230)
T TIGR01640        69 QSEHQVYTLGSNSWRTIE---CS-PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSV  144 (230)
T ss_pred             CccEEEEEeCCCCccccc---cC-CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccc
Confidence            568899999999999994   22 111122233999999999998643     27999999999999 48888755321 


Q ss_pred             CceeEEEECCEEEEEEe--cCCeEEEEEEecCCCCCeEEEEeeccc---cccCccceeeeeecCCcEEEEEeC--Cc-EE
Q 018593          244 SRSYLLECDGCLSVIEI--SDEWMETWVLKDYYRDEWHSVDKVSLR---CIKGMVPSIFPISQTREYVFLATH--KQ-VL  315 (353)
Q Consensus       244 ~~~~l~~~~g~L~~v~~--~~~~~~vw~l~~~~~~~W~~~~~i~~~---~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~  315 (353)
                      ....|++++|+|+++..  ....++||+|+++++.+|++..+++.+   +......+. ++..+|++++....  +. ++
T Consensus       145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~-~~~~~g~I~~~~~~~~~~~~~  223 (230)
T TIGR01640       145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLS-GFTDKGEIVLCCEDENPFYIF  223 (230)
T ss_pred             cceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEe-EEeeCCEEEEEeCCCCceEEE
Confidence            35689999999999987  335699999998887779999999852   222223466 77888996665543  34 99


Q ss_pred             EEECCCC
Q 018593          316 VYHRNGR  322 (353)
Q Consensus       316 ~yd~~~~  322 (353)
                      .||+++|
T Consensus       224 ~y~~~~~  230 (230)
T TIGR01640       224 YYNVGEN  230 (230)
T ss_pred             EEeccCC
Confidence            9999986

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2437 consensus Muskelin [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-05
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 2e-05
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 3e-04
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 6e-04
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 5  PDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYFIRLYNEVSSKNPMLLVQISDLIES 64
          PDE++  I + L +  L +   VCK W +L SD+    L+  +      L   ++  + S
Sbjct: 13 PDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE---SLWQTLDLTGKNLHPDVTGRLLS 69

Query: 65 KGVICVDNWRGVTEISLDFLHDRVKVR 91
          +GVI     R   +  L       +V+
Sbjct: 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQ 96
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.7
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.69
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.69
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.66
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.65
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.63
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.6
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.56
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.55
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.55
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.52
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.52
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.46
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.42
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.25
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.15
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.07
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.99
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.98
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.97
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.85
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.83
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.77
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.05
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.61
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.17
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 96.95
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.69
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 96.42
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 96.4
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.43
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 95.17
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 95.12
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 94.9
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 94.67
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 94.25
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 94.07
3jro_A 753 Fusion protein of protein transport protein SEC13 94.07
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 94.04
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 93.73
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 93.73
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 93.57
3v9f_A 781 Two-component system sensor histidine kinase/RESP 93.52
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 93.48
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 92.69
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 92.62
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 92.38
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 92.36
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 92.35
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 92.34
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 92.29
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 92.15
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 92.09
4e54_B435 DNA damage-binding protein 2; beta barrel, double 92.06
3e5z_A 296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 92.02
3jrp_A 379 Fusion protein of protein transport protein SEC13 91.91
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 91.66
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 91.64
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 91.52
4g56_B357 MGC81050 protein; protein arginine methyltransfera 91.39
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 91.27
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 91.2
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 90.77
4a2l_A 795 BT_4663, two-component system sensor histidine kin 90.74
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 90.63
3g4e_A 297 Regucalcin; six bladed beta-propeller, gluconolcat 90.56
2ghs_A 326 AGR_C_1268P; regucalcin, structural genomics, join 90.06
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 90.04
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 89.9
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 89.84
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 89.77
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 89.71
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 89.52
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 88.8
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 88.38
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 88.35
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 88.32
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 88.24
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 87.87
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 87.29
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 86.92
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 86.61
3fm0_A 345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 86.55
1jmx_B 349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 86.09
3jrp_A379 Fusion protein of protein transport protein SEC13 85.78
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 85.53
2fp8_A 322 Strictosidine synthase; six bladed beta propeller 85.24
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 85.01
3v9f_A 781 Two-component system sensor histidine kinase/RESP 85.0
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 84.7
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 84.52
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 84.3
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 84.21
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 84.02
4a2l_A 795 BT_4663, two-component system sensor histidine kin 83.68
2pm7_B297 Protein transport protein SEC13, protein transport 83.64
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 83.47
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 83.43
2p4o_A306 Hypothetical protein; putative lactonase, structur 83.28
4e54_B435 DNA damage-binding protein 2; beta barrel, double 83.24
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 82.34
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 82.08
3o4h_A 582 Acylamino-acid-releasing enzyme; alpha/beta hydrol 81.67
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 80.4
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 80.34
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.70  E-value=1.3e-14  Score=127.17  Aligned_cols=208  Identities=11%  Similarity=0.081  Sum_probs=141.4

Q ss_pred             ecCeeEEeeec---CCCceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCC
Q 018593           93 SCNGLLCCSSI---PEMGVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPD  169 (353)
Q Consensus        93 s~~Gll~~~~~---~~~~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  169 (353)
                      ..+|.+++...   .....+.++||.|++|..+++++.+    ...+..     ...     +-+++++|..   .....
T Consensus        53 ~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~----r~~~~~-----~~~-----~~~iyv~GG~---~~~~~  115 (306)
T 3ii7_A           53 FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP----RDSLAA-----CAA-----EGKIYTSGGS---EVGNS  115 (306)
T ss_dssp             EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC----CBSCEE-----EEE-----TTEEEEECCB---BTTBS
T ss_pred             EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc----ccceeE-----EEE-----CCEEEEECCC---CCCCc
Confidence            34666655431   1236899999999999999988765    222211     111     2267777631   11122


Q ss_pred             CcceEEEEEcCCCcEEEeeeccccceeeeeecCceEEEcceEEeeecCC---------CEEEEEECCCceEEEe-eCCCC
Q 018593          170 GTFKCLVFDSESNRWRKFVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC---------SFILALDLEGDVWRKI-SLPDK  239 (353)
Q Consensus       170 ~~~~~~vy~s~~~~W~~~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~---------~~i~~~D~~~~~~~~~-~~P~~  239 (353)
                      ....+++||..+++|+..   +.+ |. .+.....+.++|+||.+++..         ..+.+||+.+++|+.+ ++|..
T Consensus       116 ~~~~~~~~d~~~~~W~~~---~~~-p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~  190 (306)
T 3ii7_A          116 ALYLFECYDTRTESWHTK---PSM-LT-QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA  190 (306)
T ss_dssp             CCCCEEEEETTTTEEEEE---CCC-SS-CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC
T ss_pred             EeeeEEEEeCCCCceEeC---CCC-cC-CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch
Confidence            356899999999999999   555 32 345556788999999998731         4699999999999999 66665


Q ss_pred             CCCCCceeEEEECCEEEEEEe-cCC--eEEEEEEecCCCCCeEEEEeeccccccCccceeeeeecCCcEEEEEeC-----
Q 018593          240 VGSESRSYLLECDGCLSVIEI-SDE--WMETWVLKDYYRDEWHSVDKVSLRCIKGMVPSIFPISQTREYVFLATH-----  311 (353)
Q Consensus       240 ~~~~~~~~l~~~~g~L~~v~~-~~~--~~~vw~l~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-----  311 (353)
                      .   ....++..+|+|+++++ ...  .-++|.+ +..+.+|..+..++.+.....     ++..++.++++++.     
T Consensus       191 r---~~~~~~~~~~~i~v~GG~~~~~~~~~~~~y-d~~~~~W~~~~~~p~~r~~~~-----~~~~~~~i~v~GG~~~~~~  261 (306)
T 3ii7_A          191 R---KNHGLVFVKDKIFAVGGQNGLGGLDNVEYY-DIKLNEWKMVSPMPWKGVTVK-----CAAVGSIVYVLAGFQGVGR  261 (306)
T ss_dssp             C---BSCEEEEETTEEEEECCEETTEEBCCEEEE-ETTTTEEEECCCCSCCBSCCE-----EEEETTEEEEEECBCSSSB
T ss_pred             h---hcceEEEECCEEEEEeCCCCCCCCceEEEe-eCCCCcEEECCCCCCCcccee-----EEEECCEEEEEeCcCCCee
Confidence            5   56677888999999987 221  2346665 334488999877775432221     22236776666653     


Q ss_pred             -CcEEEEECCCCeEEEeeeec
Q 018593          312 -KQVLVYHRNGRLWKEMYSVK  331 (353)
Q Consensus       312 -~~~~~yd~~~~~~~~v~~~~  331 (353)
                       ..+..||+++++|+.+..+.
T Consensus       262 ~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          262 LGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             CCEEEEEETTTTEEEEEEEEE
T ss_pred             eeeEEEEcCCCCeEEeCCCcc
Confidence             34999999999999997775
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 353
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-07
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 3e-05
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 2e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 4  FPDEVIQQILARLPVKSLFRTKTVCKLWNKLTSDKYF 40
           PDE++  I + L +  L +   VCK W +L SD+  
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.38
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.3
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.88
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.82
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.78
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.66
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.64
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.34
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 96.39
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 96.2
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 95.43
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 93.95
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 91.1
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 90.78
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 90.44
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 85.31
d1flga_ 582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 84.87
d2p4oa1 302 Hypothetical protein All0351 homologue {Nostoc pun 84.72
d1pbyb_ 337 Quinohemoprotein amine dehydrogenase B chain {Para 84.62
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 83.14
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 82.99
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 82.37
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 82.3
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 80.71
d1l0qa2 301 Surface layer protein {Archaeon Methanosarcina maz 80.69
d1jmxb_ 346 Quinohemoprotein amine dehydrogenase B chain {Pseu 80.24
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-11  Score=104.48  Aligned_cols=198  Identities=14%  Similarity=0.126  Sum_probs=116.4

Q ss_pred             ceEEEEcccccceeeccCCCCCCCccccCCCceeEEEEEeecCCCceEEEEEeeecccCCCCCCcceEEEEEcCCCcEEE
Q 018593          107 GVYYVCNPMTREWKLLPKSRERPVTRFYPDGEATLVGLACDLAKNKYNVVLAGYHRAFGHRPDGTFKCLVFDSESNRWRK  186 (353)
Q Consensus       107 ~~~~v~NP~t~~~~~LP~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~vy~s~~~~W~~  186 (353)
                      ..+.++||.|++|..+|++|.+    +..+..     ...     +-+++++|..............+++||..+++|+.
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~----R~~~~~-----~~~-----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~   84 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVP----RSGLAG-----CVV-----GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP   84 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSC----CBSCEE-----EEE-----TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCeEEECCCCCCc----cceeEE-----EEE-----CCEEEEEeCcccCCCCccccchhhhcccccccccc
Confidence            4688999999999999988876    222211     111     12677775321111001124578899999999999


Q ss_pred             eeeccccceeeeeecCceEEEcceEEeeecCC-----CEEEEEECCCceEEEe---------------------------
Q 018593          187 FVSVQDYYQFSIMNRNQVVFVNGALHWLTDSC-----SFILALDLEGDVWRKI---------------------------  234 (353)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~g~ly~~~~~~-----~~i~~~D~~~~~~~~~---------------------------  234 (353)
                      .   +.+ | ..+.....+..+|++|.+++..     .....||+.++.|...                           
T Consensus        85 ~---~~~-p-~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~  159 (288)
T d1zgka1          85 C---APM-S-VPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDG  159 (288)
T ss_dssp             C---CCC-S-SCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             c---ccc-c-ceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCccc
Confidence            8   555 3 2345555777788888776532     3344455555555444                           


Q ss_pred             --------------------eCCCCCCCCCceeEEEECCEEEEEEe---cCCeEEEEEEecCCCCCeEEEEeeccccccC
Q 018593          235 --------------------SLPDKVGSESRSYLLECDGCLSVIEI---SDEWMETWVLKDYYRDEWHSVDKVSLRCIKG  291 (353)
Q Consensus       235 --------------------~~P~~~~~~~~~~l~~~~g~L~~v~~---~~~~~~vw~l~~~~~~~W~~~~~i~~~~~~~  291 (353)
                                          +.+....  ........+++++++.+   ....-..|.. +....+|..+..++.+....
T Consensus       160 ~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~r~~~  236 (288)
T d1zgka1         160 TNRLNSAECYYPERNEWRMITAMNTIR--SGAGVCVLHNCIYAAGGYDGQDQLNSVERY-DVETETWTFVAPMKHRRSAL  236 (288)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCSSSBCCCEEEE-ETTTTEEEECCCCSSCCBSC
T ss_pred             ccccceEEEeecccccccccccccccc--ccccccceeeeEEEecCccccccccceeee-eecceeeecccCccCcccce
Confidence                                2111110  23455667788888766   1122234444 33337788876655543222


Q ss_pred             ccceeeeeecCCcEEEEEeCC------cEEEEECCCCeEEEeeeec
Q 018593          292 MVPSIFPISQTREYVFLATHK------QVLVYHRNGRLWKEMYSVK  331 (353)
Q Consensus       292 ~~~~~~~~~~~~~~v~~~~~~------~~~~yd~~~~~~~~v~~~~  331 (353)
                      .     .+..+++++++++.+      .+.+||+++++|+.+..+.
T Consensus       237 ~-----~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  277 (288)
T d1zgka1         237 G-----ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  277 (288)
T ss_dssp             E-----EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             E-----EEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCC
Confidence            1     222367766664432      2899999999999998774
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure