Citrus Sinensis ID: 018609

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MEQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFEGTYSAGNRSV
cccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccc
ccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccc
meqssinrlerqdpeiateACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSgllpnskleTSVLSICLTissthyfipygigaaastrvsnelgagnpqAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFEGtysagnrsv
meqssinrlerqdpeiATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARErifegtysagnrsv
MEQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFEGTYSAGNRSV
***************IATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIF***********
MEQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMA****************
**********RQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFEGTYSAGNRSV
MEQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFE**********
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
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MEQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQAIVLAIITVTTNWRKQARMARERIFEGTYSAGNRSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
Q8RWF5483 MATE efflux family protei no no 0.960 0.701 0.551 1e-100
Q8GXM8476 MATE efflux family protei no no 0.934 0.693 0.527 2e-97
Q9SIA5476 MATE efflux family protei no no 0.934 0.693 0.524 8e-97
Q9SIA1477 MATE efflux family protei no no 0.934 0.691 0.545 1e-96
Q9SIA4476 MATE efflux family protei no no 0.934 0.693 0.539 2e-95
Q9SIA3476 MATE efflux family protei no no 0.934 0.693 0.515 9e-94
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.934 0.650 0.363 5e-55
Q9LUH2477 MATE efflux family protei no no 0.929 0.687 0.359 6e-51
Q9LUH3469 MATE efflux family protei no no 0.898 0.675 0.371 2e-49
Q3V050573 Multidrug and toxin extru yes no 0.926 0.570 0.328 5e-42
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/339 (55%), Positives = 236/339 (69%)

Query: 12  QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYL 71
           QDP+I+  A ++++ LIPALLA AV +PL   LQ+Q L+LPL   A  TL FHI +C  L
Sbjct: 142 QDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLIL 201

Query: 72  VFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALP 131
           V+       GAALAIGLSY  N +ILALY+R+SSSCEKTR F+  D    +K+FF + +P
Sbjct: 202 VYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIP 261

Query: 132 TVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNE 191
           +  M  +EW  FE LIL SGLLPN KLETSVLSICLT SS HY IP GIGAA S RVSNE
Sbjct: 262 SAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSICLTTSSLHYVIPMGIGAAGSIRVSNE 321

Query: 192 LGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLS 251
           LGAGNP+ A+LA    + L   EA I  T+LF CR +  YAF++ K+VV+YV+EL PLL 
Sbjct: 322 LGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYVTELSPLLC 381

Query: 252 FSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIM 311
            S ++D   +VL GVARG+GWQHIGA+ N+ AYY++G P+   L F  ++ GKGLWIG++
Sbjct: 382 ISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGKGLWIGVV 441

Query: 312 TGSAVQAIVLAIITVTTNWRKQARMARERIFEGTYSAGN 350
            GS  Q I+LAI+T   +W +QA  AR+RI   T S GN
Sbjct: 442 VGSTAQGIILAIVTACMSWNEQAAKARQRIVVRTSSFGN 480

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
255574300 472 TRANSPARENT TESTA 12 protein, putative [ 0.937 0.701 0.613 1e-122
224108371 482 predicted protein [Populus trichocarpa] 0.943 0.690 0.612 1e-119
297737740443 unnamed protein product [Vitis vinifera] 0.963 0.767 0.602 1e-113
224065228 479 predicted protein [Populus trichocarpa] 0.957 0.705 0.603 1e-113
225424132 481 PREDICTED: MATE efflux family protein 5 0.963 0.706 0.602 1e-113
147787625 481 hypothetical protein VITISV_022104 [Viti 0.963 0.706 0.6 1e-113
357444623 495 Protein TRANSPARENT TESTA [Medicago trun 0.968 0.690 0.581 1e-111
356515374 480 PREDICTED: MATE efflux family protein DT 0.966 0.710 0.580 1e-110
147782271 489 hypothetical protein VITISV_044050 [Viti 0.966 0.697 0.612 1e-110
356499620 475 PREDICTED: MATE efflux family protein DT 0.966 0.717 0.574 1e-110
>gi|255574300|ref|XP_002528064.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532525|gb|EEF34314.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/331 (61%), Positives = 267/331 (80%)

Query: 13  DPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLV 72
           DP+I+ EAC +SI LIPAL  FA+L+ L+   Q+QSLILP+ +S+CATL  HI LCW LV
Sbjct: 130 DPKISMEACRYSIGLIPALFGFAILQSLVRYFQTQSLILPMLISSCATLSAHIPLCWALV 189

Query: 73  FKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALPT 132
           FK  F  +G A++IGLSY LN + LA YMR+SSSCEKTRV  + D+FS I EF+ FALP+
Sbjct: 190 FKWEFGAIGGAMSIGLSYWLNVIFLACYMRWSSSCEKTRVLCWKDVFSSISEFWRFALPS 249

Query: 133 VVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNEL 192
            VM CLEWW+FE+L LL+G LPNSKLETSVLSIC+T ++ +Y++ YG+GAAASTRVSNEL
Sbjct: 250 AVMVCLEWWTFELLTLLAGFLPNSKLETSVLSICITTTTVNYYVQYGLGAAASTRVSNEL 309

Query: 193 GAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLSF 252
           G+GNPQ A+    V++ +++TEAVIV T LFCCR +  YA+++DK+VVNYV+E+ PLL  
Sbjct: 310 GSGNPQKARSVVRVILAVSITEAVIVSTALFCCRRIFGYAYSNDKEVVNYVTEIAPLLCL 369

Query: 253 SIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMT 312
           S+IMDSLQ+VLSG+ARG GWQ  GA +N  AY  VG+P++ VLCFV++L+GKGLWIG++T
Sbjct: 370 SVIMDSLQAVLSGIARGCGWQRTGAVINFSAYNFVGVPVSVVLCFVVHLKGKGLWIGVLT 429

Query: 313 GSAVQAIVLAIITVTTNWRKQARMARERIFE 343
           GS VQ  +LA++T +T+W+KQA MA+ER+F+
Sbjct: 430 GSVVQVALLALMTASTDWQKQATMAKERMFK 460

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065228|ref|XP_002301727.1| predicted protein [Populus trichocarpa] gi|222843453|gb|EEE81000.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356515374|ref|XP_003526375.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|147782271|emb|CAN69572.1| hypothetical protein VITISV_044050 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499620|ref|XP_003518635.1| PREDICTED: MATE efflux family protein DTX1-like isoform 1 [Glycine max] gi|356499622|ref|XP_003518636.1| PREDICTED: MATE efflux family protein DTX1-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.949 0.690 0.555 3.5e-98
TAIR|locus:2033309485 AT1G66780 "AT1G66780" [Arabido 0.949 0.690 0.558 1.6e-95
TAIR|locus:2050230483 AT2G04100 "AT2G04100" [Arabido 0.960 0.701 0.551 4.8e-94
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.934 0.677 0.527 1.3e-93
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.934 0.677 0.533 2.1e-93
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.934 0.693 0.539 2.7e-93
TAIR|locus:2010926502 AT1G64820 [Arabidopsis thalian 0.963 0.677 0.519 9e-93
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.966 0.707 0.519 1.1e-92
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.934 0.693 0.527 3e-92
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.934 0.686 0.527 3.9e-92
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 186/335 (55%), Positives = 241/335 (71%)

Query:    12 QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYL 71
             QD  +A EA  F+  LIPAL  +A L+PL+   Q+QSLILPL +S+ ++LC HI+LCW L
Sbjct:   138 QDAMVAQEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSL 197

Query:    72 VFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFALP 131
             VFK     +GAA+AIG+SY LN  +L LYM +SSSC K+R  I   +F  + EFF F +P
Sbjct:   198 VFKFGLGSLGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRFGIP 257

Query:   132 TVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNE 191
             +  M CLEWWSFE L+LLSG+LPN KLE SVLS+CL+  S+ Y IP  +GAAASTRV+NE
Sbjct:   258 SASMICLEWWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANE 317

Query:   192 LGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLLS 251
             LGAGNP+ A++A    MV+   E+++VG I+F  R V  Y F+S+ +VV+YV  + PLLS
Sbjct:   318 LGAGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDYVKSMAPLLS 377

Query:   252 FSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIM 311
              S+I D+L + LSGVARG+G Q IGAYVNL AYY+ GIP A +L F   +RG+GLWIGI 
Sbjct:   378 LSVIFDALHAALSGVARGSGRQDIGAYVNLAAYYLFGIPTAILLAFGFKMRGRGLWIGIT 437

Query:   312 TGSAVQAIVLAIITVTTNWRKQARMARERIFEGTY 346
              GS VQA++L +I + TNW+KQAR ARER+    Y
Sbjct:   438 VGSCVQAVLLGLIVILTNWKKQARKARERVMGDEY 472
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.6692.1
hypothetical protein (455 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
  •     0.425

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-118
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-35
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-34
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 5e-33
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-26
pfam01554161 pfam01554, MatE, MatE 1e-24
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-23
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-19
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-17
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-15
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 4e-15
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-12
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 8e-10
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 9e-10
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 6e-09
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-08
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 4e-08
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 7e-08
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 5e-06
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 4e-05
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-04
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 0.001
cd13137 432 cd13137, MATE_NorM_like, Subfamily of the multidru 0.002
TIGR00797 342 TIGR00797, matE, putative efflux protein, MATE fam 0.003
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  348 bits (895), Expect = e-118
 Identities = 151/325 (46%), Positives = 208/325 (64%), Gaps = 1/325 (0%)

Query: 11  RQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWY 70
            QDPEIA  A  +   LIP L A+A+  PL   LQ+Q ++LPL   +   L  +ILL + 
Sbjct: 112 GQDPEIARLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYL 171

Query: 71  LVFKANFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDIFSCIKEFFSFAL 130
           LVF      +GAALA  +SY L  V+L LY+ +S   + T      + F     F   A+
Sbjct: 172 LVFVLGLGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAI 231

Query: 131 PTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAASTRVSN 190
           P+ +M CLEWW+FEIL+LL+GLLP   +  +  SICLT +S  Y IP GI  AAS RV N
Sbjct: 232 PSALMLCLEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGN 290

Query: 191 ELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSELVPLL 250
           ELGAGNP+ A+LAA V ++L++   V+V  +L   R V AY F SD++V+  V++L+P+L
Sbjct: 291 ELGAGNPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPIL 350

Query: 251 SFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGI 310
           +   I D LQ+VLSGV RG G Q +GAYVNL AYY++G+P+  +L FVL L  KGLWIG+
Sbjct: 351 ALFQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGL 410

Query: 311 MTGSAVQAIVLAIITVTTNWRKQAR 335
           + G  +QA++L +I + T+W K+A 
Sbjct: 411 IAGLILQAVILLLIILRTDWDKEAE 435

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.97
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.97
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.96
PRK15099416 O-antigen translocase; Provisional 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.95
PRK00187 464 multidrug efflux protein NorA; Provisional 99.94
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.94
PRK10189 478 MATE family multidrug exporter; Provisional 99.94
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.94
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.93
PRK01766 456 multidrug efflux protein; Reviewed 99.93
PRK10459492 colanic acid exporter; Provisional 99.87
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.86
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.85
COG2244480 RfbX Membrane protein involved in the export of O- 99.8
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.57
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.54
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.48
PRK15099 416 O-antigen translocase; Provisional 99.37
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.19
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.06
COG0728 518 MviN Uncharacterized membrane protein, putative vi 98.88
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.87
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.69
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.6
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.4
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.34
PRK10459 492 colanic acid exporter; Provisional 98.31
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.31
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.14
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 98.12
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.11
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.77
COG2244 480 RfbX Membrane protein involved in the export of O- 97.73
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 94.41
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 90.14
COG4267467 Predicted membrane protein [Function unknown] 86.96
COG4267 467 Predicted membrane protein [Function unknown] 83.53
TIGR00822265 EII-Sor PTS system, mannose/fructose/sorbose famil 80.35
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4e-50  Score=374.59  Aligned_cols=335  Identities=24%  Similarity=0.324  Sum_probs=316.7

Q ss_pred             CchhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh-cC-CC
Q 018609            1 MEQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK-AN-FR   78 (353)
Q Consensus         1 ~~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~-~~-~g   78 (353)
                      +++|+++++++.++|+.+.+.+|+++..++.|+..++..+++.+|++||+|.|++.+++++++|+++|++|+++ ++ +|
T Consensus       116 ~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lG  195 (455)
T COG0534         116 FFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLG  195 (455)
T ss_pred             HHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999 67 99


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhcccc-ccccccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCChh
Q 018609           79 IVGAALAIGLSYCLNAVILALYMRYSSS-CEKTRVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPNSK  157 (353)
Q Consensus        79 i~g~a~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~  157 (353)
                      +.|+|+||++++.+++++..++++++++ ......+..+.+++.+|+++|+|+|..+++..+...+...+.+++++|+. 
T Consensus       196 v~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~-  274 (455)
T COG0534         196 VAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV-  274 (455)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH-
Confidence            9999999999999999999999988865 22233344467789999999999999999999999999999999999955 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q 018609          158 LETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDK  237 (353)
Q Consensus       158 ~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~  237 (353)
                       ++|+|+++.++.++..++..|++++.+++++|++|+||+|++++..+.+..+++++++..+.+++++++++..+|++|+
T Consensus       275 -~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~  353 (455)
T COG0534         275 -ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDP  353 (455)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHHhCCCchHhhHHHHHHHHHH
Q 018609          238 DVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFVLNLRGKGLWIGIMTGSAVQ  317 (353)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~~~~~~~~~~  317 (353)
                      |+.+.+..++++..+..++++.+.+..+.+||.||++.+++.++++.+.+.+|+.+++.... +|..|+|+++..++.+.
T Consensus       354 ~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~  432 (455)
T COG0534         354 EVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILR  432 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999877 89999999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHH
Q 018609          318 AIVLAIITVTTNWRKQARMAR  338 (353)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~  338 (353)
                      .+....++++.+|+++..+.+
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~  453 (455)
T COG0534         433 AILLLLRLRRGRWRRKAVAAA  453 (455)
T ss_pred             HHHHHHHHHHhhhhhhhhhcc
Confidence            999999999998887765443

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 5e-12
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 7e-05
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 135/334 (40%), Gaps = 25/334 (7%)
Query: 6   INRLERQDPEIATEACNFSISLI---PALLAFAVLRPLIHNLQSQSLILPLFLSACATLC 62
           I R    +  +AT+   +  ++I   PA L F  LR     +   SL  P  +     L 
Sbjct: 115 IIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGM---SLTKPAMVIGFIGLL 171
Query: 63  FHILLCWYLVFKA----NFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVFIFSDI 118
            +I L W  V+          VG  +A  + Y +  ++L  Y+  S      +VF   + 
Sbjct: 172 LNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF---ET 228
Query: 119 FSCIK-----EFFSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTH 173
           F   +       F    P       E   F ++ LL  + P      +   + L  SS  
Sbjct: 229 FHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALL--VAPLGSTVVAAHQVALNFSSLV 286
Query: 174 YFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAF 233
           +  P  IGAA S RV ++LG  + + A +AA V ++  +  A I   +    R  +A  +
Sbjct: 287 FMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLY 346
Query: 234 NSDKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLAS 293
             ++ VV    +L+   +    MD++Q V +G  RG        +    +Y+++G+P   
Sbjct: 347 TENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGY 406
Query: 294 VLCFV-----LNLRGKGLWIGIMTGSAVQAIVLA 322
           +L          L  KG W+G + G +  A++L 
Sbjct: 407 ILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-61
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  202 bits (517), Expect = 1e-61
 Identities = 73/323 (22%), Positives = 133/323 (41%), Gaps = 13/323 (4%)

Query: 12  QDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYL 71
            +  +AT+   +  ++I A+ A+ + + L       SL  P  +     L  +I L W  
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF 180

Query: 72  VFKA----NFRIVGAALAIGLSYCLNAVILALYMRYSSSCEKTRVF--IFSDIFSCIKEF 125
           V+          VG  +A  + Y +  ++L  Y+  S      +VF          +   
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRL 240

Query: 126 FSFALPTVVMFCLEWWSFEILILLSGLLPNSKLETSVLSICLTISSTHYFIPYGIGAAAS 185
           F    P       E   F ++ LL   L ++ +  +   + L  SS  +  P  IGAA S
Sbjct: 241 FRLGFPVAAALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVS 298

Query: 186 TRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNSDKDVVNYVSE 245
            RV ++LG  + + A +AA V ++  +  A I   +    R  +A  +  ++ VV    +
Sbjct: 299 IRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQ 358

Query: 246 LVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFV-----LN 300
           L+   +    MD++Q V +G  RG        +    +Y+++G+P   +L          
Sbjct: 359 LLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQP 418

Query: 301 LRGKGLWIGIMTGSAVQAIVLAI 323
           L  KG W+G + G +  A++L  
Sbjct: 419 LGAKGFWLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.1e-40  Score=313.31  Aligned_cols=326  Identities=22%  Similarity=0.342  Sum_probs=300.5

Q ss_pred             chhhhhhHhCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhh----cCC
Q 018609            2 EQSSINRLERQDPEIATEACNFSISLIPALLAFAVLRPLIHNLQSQSLILPLFLSACATLCFHILLCWYLVFK----ANF   77 (353)
Q Consensus         2 ~~~~i~~~l~~~~~~~~~a~~yl~~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~~ni~~~~lli~~----~~~   77 (353)
                      ++++++.+++.|+++.+.+.+|+++..++.|+..+....++.+|++|+++.+++.+++++++|+++++++++.    |++
T Consensus       111 ~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~  190 (460)
T 3mkt_A          111 QTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPEL  190 (460)
T ss_dssp             HHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCC
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence            4678888999999999999999999999999999999999999999999999999999999999999999986    489


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhccccccc-c-ccCCChhhHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC
Q 018609           78 RIVGAALAIGLSYCLNAVILALYMRYSSSCEK-T-RVFIFSDIFSCIKEFFSFALPTVVMFCLEWWSFEILILLSGLLPN  155 (353)
Q Consensus        78 gi~g~a~at~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~  155 (353)
                      |+.|+++|+.+++.+..++..++.+++++.++ + ++++.+.+++..|+++++++|..++++.+.+....++.+++++|+
T Consensus       191 g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~  270 (460)
T 3mkt_A          191 GGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGS  270 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSS
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            99999999999999999998888877654322 1 123334567889999999999999999999999999999999985


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 018609          156 SKLETSVLSICLTISSTHYFIPYGIGAAASTRVSNELGAGNPQAAQLAACVVMVLAVTEAVIVGTILFCCRYVLAYAFNS  235 (353)
Q Consensus       156 ~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~  235 (353)
                      +  ++++|+++.++.++...+..+++++..|.+++++|+||+|++++..+.+..+++.++++.+++++++++++..+|++
T Consensus       271 ~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  348 (460)
T 3mkt_A          271 T--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTE  348 (460)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4  89999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhHHHHHHHHH----hC-CCchHhhHHH
Q 018609          236 DKDVVNYVSELVPLLSFSIIMDSLQSVLSGVARGTGWQHIGAYVNLGAYYIVGIPLASVLCFV----LN-LRGKGLWIGI  310 (353)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~~~  310 (353)
                      |+++.+.+..++++++++.++.+++.+..+++++.||++.++..++++.+++++|+++++...    ++ +|..|+|+++
T Consensus       349 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~  428 (460)
T 3mkt_A          349 NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGF  428 (460)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHH
Confidence            999999999999999999999999999999999999999999999999779999999999987    67 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC
Q 018609          311 MTGSAVQAIVLAIITVTTN  329 (353)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~  329 (353)
                      .+++.+..++....++|..
T Consensus       429 ~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          429 IIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999888776665543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00