Citrus Sinensis ID: 018626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MAAANPQPLQARPFEEHARAPPIQIEDEDGDYEDGEGMDDIDEGNINSINIINNNNNNNNTNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIPSNFD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEEcEEEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHEEHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHccccccccccEccccccccccccHHHcccccccccccccccc
Coil and Loop (DISEMBL)
maaanpqplqarpfeeharappiqiededgdyedgegmddidegninsiniinnnnnnnntnnnsnisnnssMVNVAEHGVVVAAAsrtseltlsfegevyvfpavtPEKVQAVLLLLggrdiptgvptievpydqsnrgvvdtpkrsnlSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMhrkngqfaslkessgaspwdssqdgiqdgtprpetvvrrcqhcgvsenntpamrrgpagprtlcnacglmwanketpmdvkpsimegefsgnqdelgtpedpakavnqgsdnpsidpdeedmhgaaedltnslpmglvhssadddeqeplvelanpsdtdidipsnfd
Flexible Loop (DISEMBL)
maaanpqplqarpfeeharappiqiededgdyEDGEGMDDIDEGNINSINIINNNNNNNNTNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPtgvptievpydqsnrgvvdtpkrsnlsrriaslvrfrekrkercfdkkirysVRKEvaqrmhrkngqfaslkessgaspwdssqdgiQDGTPRPETVVRRCQHCGvsenntpamrrgpagPRTLCNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVelanpsdtdidipsnfd
Low Complexity Region (SEG)
MAAANPQPLQARPFEEHARAPPIQIededgdyedgegmddidegninsiniinnnnnnnntnnnsnisnnssMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIPSNFD
Disordered region (IsUnstruct)
***************************************************************************VAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYD******************IASLVRFR****ERCFDKKIRYS**********************************************************************TLCNACGLMWAN***********************************************************************************************
Disordered Region (DISOPRED)
***********************************E*******************************************************LTLSFEGEVYVFPAVTPEKVQA*******************************************************************************ASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW*******************************************************************************************IP****
Disordered Region (DISEMBL)
MAAANPQPLQARPFEEHARAPPIQIEDEDGDYEDGEGMDDIDEGNINSINIINNNNNNNNTNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQ*******************************RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIPSNFD
Disordered Region (DISPRO)
****************************************************************************AEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTI***********VDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRM**********************************TVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKET*******************************************************SL*****************V*L***SDTDIDI***F*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAANPQPLQARPFEEHARAPPIQIEDEDGDYEDGEGMDDIDEGNINSINIINNNNNNNNTNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIPSNFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
Q8GXL7	297	GATA transcription factor	yes	no	0.487	0.579	0.592	8e-54
Q8H1G0	302	GATA transcription factor	no	no	0.518	0.605	0.544	4e-51
Q9LRH6	309	GATA transcription factor	no	no	0.560	0.640	0.475	4e-44
Q93WK5	727	Two-component response re	no	no	0.124	0.060	0.545	1e-07
Q8L500	468	Two-component response re	no	no	0.135	0.102	0.520	2e-07
Q689G9	518	Two-component response re	no	no	0.118	0.081	0.595	2e-07
Q9LKL2	618	Two-component response re	no	no	0.124	0.071	0.568	2e-07
Q55C49	1006	GATA zinc finger domain-c	yes	no	0.096	0.033	0.611	5e-07
Q8L4M6	269	GATA transcription factor	no	no	0.141	0.185	0.472	5e-07
B0G188	695	GATA zinc finger domain-c	no	no	0.087	0.044	0.666	1e-06

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  211 bits (537), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/184 (59%), Positives = 132/184 (71%), Gaps = 12/184 (6%)

Query: 91  ELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNR--GVVDTPKRS 148
           +LTLSF+G+VYVF  V+PEKVQAVLLLLGGR++P  +PT      Q+NR  G+  TP+R 
Sbjct: 79  QLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRL 138

Query: 149 NLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKES-----SGASP 203
           ++ +R+ASL+RFREKRK R FDK IRY+VRKEVA RM RK GQF S K S     S  S 
Sbjct: 139 SVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSD 198

Query: 204 WDSSQDGIQDG--TPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKET 261
           W S+Q    +G  T +PE +   C+HCG SE +TP MRRGP GPRTLCNACGLMWANK T
Sbjct: 199 WGSNQSWAVEGTETQKPEVL---CRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGT 255

Query: 262 PMDV 265
             D+
Sbjct: 256 LRDL 259

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 131/193 (67%), Gaps = 10/193 (5%)

Query: 81  VVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNR- 139
           VV   + +  +LTLSF+G+VYVF +V PEKVQAVLLLLGGR++P   P       Q+NR 
Sbjct: 73  VVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRV 132

Query: 140 -GVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKE- 197
             +  TP+R ++ +R+ASLVRFREKRK R FDKKIRY+VRKEVA RM R  GQF S K  
Sbjct: 133 SSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSN 192

Query: 198 ----SSGASPWDSSQD-GIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNAC 252
               +S  S W S+Q   I+    + + +   C+HCG+ E +TP MRRGPAGPRTLCNAC
Sbjct: 193 NDEAASAGSSWGSNQTWAIESSEAQHQEI--SCRHCGIGEKSTPMMRRGPAGPRTLCNAC 250

Query: 253 GLMWANKETPMDV 265
           GLMWANK    D+
Sbjct: 251 GLMWANKGAFRDL 263

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  179 bits (453), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 126/204 (61%), Gaps = 6/204 (2%)

Query: 91  ELTLSFEGEVYVFPAVTPEKVQAVLLLLGGR-DIPTGVPTIEVPYDQSNRGVVDTPKRSN 149
           +LT+SF G+VYVF AV  +KV AVL LLGG  ++  G   +E+   Q++  VV+   R +
Sbjct: 83  QLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCS 142

Query: 150 LSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQD 209
           L +R  SL RFR+KR  RCF+KK+RY VR+EVA RM R  GQF S K + GA    + QD
Sbjct: 143 LPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQD 202

Query: 210 GIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPSI 269
             QD    PE     C HCG+S   TP MRRGP+GPRTLCNACGL WAN+ T  D+    
Sbjct: 203 SAQDDA-HPEI---SCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKT 258

Query: 270 MEGEFSGNQ-DELGTPEDPAKAVN 292
            E + +  + D+ G+  D A  +N
Sbjct: 259 EENQLALMKPDDGGSVADAANNLN 282

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 150 LSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFA 193
           +S+R A+L +FR+KRKERCF KK+RY  RK++A++  R  GQF 
Sbjct: 666 ISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFV 709

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query: 146 KRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFA 193
           +R + S+R A+L++FR KRK+RCFDKK+RY  RK++A++  R  GQF 
Sbjct: 410 QRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFV 457

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 152 RRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFA 193
           RR A+L +FR KRKERCFDKK+RY  RK++A+   R  GQF 
Sbjct: 442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFV 483

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 31/44 (70%)

Query: 150 LSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFA 193
           L RR  +L++FR KR +RCFDKKIRY  RK +A+R  R  GQF 
Sbjct: 530 LDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFV 573

Controls photoperiodic flowering response. Component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Positive regulator of CCA1 and LHY expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55C49|GTAG_DICDI GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=4 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 225 CQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKE 260
           C +CG    NTP  RRGP+GP TLCNACGL +A K+
Sbjct: 842 CHNCGTK--NTPEWRRGPSGPATLCNACGLAYAKKQ 875

Dictyostelium discoideum (taxid: 44689)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 5/55 (9%)

Query: 217 RPETVV---RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPS 268
           + ETV+   RRC HCG   NNTP  R GP GP+TLCNACG+ + +     + +P+
Sbjct: 171 KQETVLVFQRRCSHCGT--NNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPA 223

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|B0G188|GTAP_DICDI GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=4 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 225 CQHCGVSENNTPAMRRGPAGPRTLCNACGLMWA 257
           C  CGV+  NTP  RRGP G +TLCNACGL WA
Sbjct: 479 CHTCGVT--NTPEWRRGPNGAKTLCNACGLAWA 509

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
255572874	327	GATA transcription factor, putative [Ric	0.864	0.932	0.685	1e-133
359492959	368	PREDICTED: GATA transcription factor 24-	0.923	0.885	0.648	1e-131
302142082	324	unnamed protein product [Vitis vinifera]	0.810	0.882	0.673	1e-120
449469793	328	PREDICTED: GATA transcription factor 24-	0.872	0.939	0.613	1e-118
356508042	350	PREDICTED: GATA transcription factor 24-	0.929	0.937	0.613	1e-115
363807430	351	uncharacterized protein LOC100784257 [Gl	0.776	0.780	0.683	1e-109
356508044	325	PREDICTED: GATA transcription factor 24-	0.861	0.935	0.593	1e-107
224067116	280	predicted protein [Populus trichocarpa]	0.640	0.807	0.730	1e-97
357465211	377	Two-component response regulator-like PR	0.750	0.702	0.565	3e-91
359494710	371	PREDICTED: GATA transcription factor 28-	0.926	0.881	0.505	2e-85

>gi|255572874|ref|XP_002527369.1| GATA transcription factor, putative [Ricinus communis] gi|223533288|gb|EEF35041.1| GATA transcription factor, putative [Ricinus communis]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/375 (68%), Positives = 280/375 (74%), Gaps = 70/375 (18%)

Query: 1   MAAANPQPLQARPFEEHARAPPIQIEDED-GDYEDGEGMDDIDEGNINSINIINNNNNNN 59
           MAAANP PLQARP+E+H +AP IQI+D+D  +YEDG+ MDD++                +
Sbjct: 1   MAAANPLPLQARPYEDHVQAP-IQIDDDDVREYEDGDAMDDVE----------------D 43

Query: 60  NTNNNSNISNNSSMVNVAEHGVV-VAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLL 118
           NT  NS        VNVAEHG   V  ASRTSELTLSFEGEV+VFPAVTPEKVQAVLLLL
Sbjct: 44  NTPMNSG-------VNVAEHGGGGVIVASRTSELTLSFEGEVFVFPAVTPEKVQAVLLLL 96

Query: 119 GGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVR 178
           GGRDIPT VPTIEVP  Q+NRGV DTPKRSNLSRRIASLVRFREKRKERCFDKKIRY+VR
Sbjct: 97  GGRDIPTAVPTIEVPCVQNNRGVDDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVR 156

Query: 179 KEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAM 238
           KEVAQRMHRKNGQFASLKESSG S WDS+Q  +QDGTPRPETVVRRCQHCGVSENNTPAM
Sbjct: 157 KEVAQRMHRKNGQFASLKESSGGSSWDSAQSCLQDGTPRPETVVRRCQHCGVSENNTPAM 216

Query: 239 RRGPAGPRTLCNACGLMWANK--------------------ETPMDVKPSIMEGEFSGNQ 278
           RRGPAGPRTLCNACGLMWANK                    ETP+DVKPSIMEGEFSGNQ
Sbjct: 217 RRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNASTDQIEPETPIDVKPSIMEGEFSGNQ 276

Query: 279 DELGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVEL 338
                                   DE  +  A+EDLT++LPM +VHSSADDD+QEPLVEL
Sbjct: 277 ------------------------DEHVLQEASEDLTSTLPMRVVHSSADDDDQEPLVEL 312

Query: 339 ANPSDTDIDIPSNFD 353
           ANPSD D+DIPSNFD
Sbjct: 313 ANPSDADLDIPSNFD 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492959|ref|XP_002283738.2| PREDICTED: GATA transcription factor 24-like [Vitis vinifera]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/395 (64%), Positives = 288/395 (72%), Gaps = 69/395 (17%)

Query: 1   MAAANPQPLQARPFEEHARAPPIQIEDEDGDYEDGEGMDDIDEG---------NINSINI 51
           MA ANPQPLQARPFE+H + P IQI D+D D+E   G     +          +INSIN 
Sbjct: 1   MAMANPQPLQARPFEDHMQIP-IQIHDDDADFEVDGGASAPADDAMDDVDDDPHINSINP 59

Query: 52  INNNNNNNNTNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKV 111
           I++                         GVVVA  SRTSELTL+FEGEVYVFPAVTPEKV
Sbjct: 60  IDHA------------------------GVVVA--SRTSELTLAFEGEVYVFPAVTPEKV 93

Query: 112 QAVLLLLGGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDK 171
           QAVLLLLGGRDIPTGVPTIEVP+DQSNRGV D PKRSNLSRRIASLVRFREKRKERCFDK
Sbjct: 94  QAVLLLLGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDK 153

Query: 172 KIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVS 231
           KIRY+VRKEVAQRMHRKNGQFASLKESSG S WDS+Q    D TPRPETV+RRCQHCGVS
Sbjct: 154 KIRYTVRKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVS 213

Query: 232 ENNTPAMRRGPAGPRTLCNACGLMWANK--------------------ETPMDVKPSIME 271
           EN+TPAMRRGPAGPRTLCNACGLMWANK                     TP+DVKPSIME
Sbjct: 214 ENSTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIELGTPIDVKPSIME 273

Query: 272 GE-FSGNQDELGTPEDPAKAVNQGSDNPSIDPDEE------------DMHGAAEDLTNSL 318
           GE FSG+QDE  TPEDP+KAV + +DNPS++ DEE            D+H  A+DL+++L
Sbjct: 274 GENFSGSQDEHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSSFTDLHETADDLSHTL 333

Query: 319 PMGLVHSSADDDEQEPLVELANPSDTDIDIPSNFD 353
           PMG+VHSS + D+QE LVELAN S+T++DIP NFD
Sbjct: 334 PMGIVHSSGNLDDQETLVELANASETEMDIPGNFD 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142082|emb|CBI19285.3| unnamed protein product [Vitis vinifera]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/346 (67%), Positives = 262/346 (75%), Gaps = 60/346 (17%)

Query: 38  MDDIDEG-NINSINIINNNNNNNNTNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSF 96
           MDD+D+  +INSIN I++                         GVVVA  SRTSELTL+F
Sbjct: 1   MDDVDDDPHINSINPIDHA------------------------GVVVA--SRTSELTLAF 34

Query: 97  EGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIAS 156
           EGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVP+DQSNRGV D PKRSNLSRRIAS
Sbjct: 35  EGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIAS 94

Query: 157 LVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTP 216
           LVRFREKRKERCFDKKIRY+VRKEVAQRMHRKNGQFASLKESSG S WDS+Q    D TP
Sbjct: 95  LVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTP 154

Query: 217 RPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK----------------- 259
           RPETV+RRCQHCGVSEN+TPAMRRGPAGPRTLCNACGLMWANK                 
Sbjct: 155 RPETVLRRCQHCGVSENSTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQ 214

Query: 260 ---ETPMDVKPSIMEGE-FSGNQDELGTPEDPAKAVNQGSDNPSIDPDEE---------- 305
               TP+DVKPSIMEGE FSG+QDE  TPEDP+KAV + +DNPS++ DEE          
Sbjct: 215 IELGTPIDVKPSIMEGENFSGSQDEHITPEDPSKAVAERTDNPSVNADEEVMSSGVYPSS 274

Query: 306 --DMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIP 349
             D+H  A+DL+++LPMG+VHSS + D+QE LVELAN S+T++DIP
Sbjct: 275 FTDLHETADDLSHTLPMGIVHSSGNLDDQETLVELANASETEMDIP 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469793|ref|XP_004152603.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus] gi|449511418|ref|XP_004163951.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/373 (61%), Positives = 257/373 (68%), Gaps = 65/373 (17%)

Query: 1   MAAANPQPLQARPFEEHARAPPIQIEDEDGDYEDGEGMDDIDEGNINSINIINNNNNNNN 60
           MAAANPQPLQARPF+EH + P +                     + +             
Sbjct: 1   MAAANPQPLQARPFQEHVQVPSMM-------------------ADDDGEYEDGGGGGGGG 41

Query: 61  TNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGG 120
              +     + + V+VA HG +V A SR SELTLSFEGEVYVFP VTPEKVQAVLLLLGG
Sbjct: 42  DVMDDVEEAHMTSVSVANHGGLVMA-SRASELTLSFEGEVYVFPEVTPEKVQAVLLLLGG 100

Query: 121 RDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKE 180
           RD+P  VPT+EVPYD +NRG+VDTPKRSNLSRRIASLVRFREKRKERCFDKKIRY+VRKE
Sbjct: 101 RDVPADVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKE 160

Query: 181 VAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRR 240
           VAQRMHRKNGQFASLKESSGAS W+S+   +QDGT R ETV+R+CQHCGVSENNTPAMRR
Sbjct: 161 VAQRMHRKNGQFASLKESSGASSWESAHSCLQDGT-RSETVLRKCQHCGVSENNTPAMRR 219

Query: 241 GPAGPRTLCNACGLMWANK--------------------ETPMDVKPSIMEGEFSGNQDE 280
           GPAGPRTLCNACGLMWANK                    ETPMDVKP IMEGEFSG QDE
Sbjct: 220 GPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPVIMEGEFSGIQDE 279

Query: 281 LGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELAN 340
                                    D++    +LTNSLPM +V+ S++DDEQEPLVELAN
Sbjct: 280 ------------------------HDINETTGELTNSLPMRIVNHSSNDDEQEPLVELAN 315

Query: 341 PSDTDIDIPSNFD 353
           PSDTDIDIP+NFD
Sbjct: 316 PSDTDIDIPTNFD 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508042|ref|XP_003522771.1| PREDICTED: GATA transcription factor 24-like isoform 1 [Glycine max]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/375 (61%), Positives = 267/375 (71%), Gaps = 47/375 (12%)

Query: 1   MAAANPQPLQARPFEEHARAPPIQIEDEDGDYEDGEGMDDIDEGNINSINIINNNNNNNN 60
           MA  NPQPLQ   FE+ A  P    +D+D D  D + MD++++ N+NS+N+ N  + N  
Sbjct: 1   MATVNPQPLQ---FEDPA-IPVDDDDDDDDDGGDDDAMDELEDANVNSVNVTNAASVN-- 54

Query: 61  TNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGG 120
                             H  VVA  SRTSELTLSFEGEVYVFPAVTP+KVQAVLLLLGG
Sbjct: 55  ------------------HEAVVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGG 96

Query: 121 RDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKE 180
           RD+  GVP +E P+DQSNR + DTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKE
Sbjct: 97  RDVQAGVPAVEPPFDQSNRDMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKE 156

Query: 181 VAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRR 240
           VAQRMHRKNGQFASLKES G+S WDS+Q   Q GT   E+ VRRC HCGV ENNTPAMRR
Sbjct: 157 VAQRMHRKNGQFASLKESPGSSNWDSAQSSGQVGTSHSES-VRRCHHCGVGENNTPAMRR 215

Query: 241 GPAGPRTLCNACGLMWANK--------------------ETPMDVKP-SIMEGEFSGNQD 279
           GPAGPRTLCNACGLMWANK                    +TP+DVKP S++EGE  G  D
Sbjct: 216 GPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHD 275

Query: 280 ELGTPEDPAKA-VNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVEL 338
           E G+ EDP+K+    GS N +++P +E++   AE  TN LP+G+ HSS +D EQEPLVEL
Sbjct: 276 EQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTNVLPLGIGHSSTNDSEQEPLVEL 335

Query: 339 ANPSDTDIDIPSNFD 353
           +NPSDTDIDIP NFD
Sbjct: 336 SNPSDTDIDIPGNFD 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807430|ref|NP_001242386.1| uncharacterized protein LOC100784257 [Glycine max] gi|255634921|gb|ACU17819.1| unknown [Glycine max]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/297 (68%), Positives = 231/297 (77%), Gaps = 23/297 (7%)

Query: 79  HGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSN 138
           H  VVA  SRTSELTLSFEGEVYVFPA+TP+KVQAVLLLLGGRD+   VP +E P+DQSN
Sbjct: 56  HEAVVAMPSRTSELTLSFEGEVYVFPAITPQKVQAVLLLLGGRDVQARVPAVEQPFDQSN 115

Query: 139 RGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKES 198
           RG+ DTPKRS+LSRRIASLVRFR KRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKES
Sbjct: 116 RGMGDTPKRSDLSRRIASLVRFRVKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKES 175

Query: 199 SGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWAN 258
            G+S WDS Q   QDGT   E+ VRRC HCGVSENNTPAMRRGPAGPRTLCNACGLMWAN
Sbjct: 176 PGSSNWDSVQSSGQDGTSHSES-VRRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWAN 234

Query: 259 K--------------------ETPMDVKP-SIMEGEFSGNQDELGTPEDPAKA-VNQGSD 296
           K                    +TP+DVKP S++EGE  G  DE  + EDP+K+    GS 
Sbjct: 235 KGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQDSSEDPSKSNAADGSS 294

Query: 297 NPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIPSNFD 353
           N +++P +E++   AE  TN LP+G+ HSS +++EQEPLVEL+NPSDTDIDIP NFD
Sbjct: 295 NHAVNPSDEELPETAEHFTNVLPLGIGHSSTNENEQEPLVELSNPSDTDIDIPGNFD 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508044|ref|XP_003522772.1| PREDICTED: GATA transcription factor 24-like isoform 2 [Glycine max]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/374 (59%), Positives = 250/374 (66%), Gaps = 70/374 (18%)

Query: 1   MAAANPQPLQARPFEEHARAPPIQIEDEDGDYEDGEGMDDIDEGNINSINIINNNNNNNN 60
           MA  NPQPLQ   FE+ A  P    +D+D D  D + MD++++ N+NS+N+ N  + N  
Sbjct: 1   MATVNPQPLQ---FEDPA-IPVDDDDDDDDDGGDDDAMDELEDANVNSVNVTNAASVN-- 54

Query: 61  TNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGG 120
                             H  VVA  SRTSELTLSFEGEVYVFPAVTP+KVQAVLLLLGG
Sbjct: 55  ------------------HEAVVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGG 96

Query: 121 RDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKE 180
           RD+  GVP +E P+DQSNR + DTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKE
Sbjct: 97  RDVQAGVPAVEPPFDQSNRDMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKE 156

Query: 181 VAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRR 240
           VAQRMHRKNGQFASLKES G+S WDS+Q   Q GT   E+ VRRC HCGV ENNTPAMRR
Sbjct: 157 VAQRMHRKNGQFASLKESPGSSNWDSAQSSGQVGTSHSES-VRRCHHCGVGENNTPAMRR 215

Query: 241 GPAGPRTLCNACGLMWANK--------------------ETPMDVKP-SIMEGEFSGNQD 279
           GPAGPRTLCNACGLMWANK                    +TP+DVKP S++EGE  G  D
Sbjct: 216 GPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHD 275

Query: 280 ELGTPEDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELA 339
           E   PE                         AE  TN LP+G+ HSS +D EQEPLVEL+
Sbjct: 276 EQELPE------------------------TAEHFTNVLPLGIGHSSTNDSEQEPLVELS 311

Query: 340 NPSDTDIDIPSNFD 353
           NPSDTDIDIP NFD
Sbjct: 312 NPSDTDIDIPGNFD 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067116|ref|XP_002302363.1| predicted protein [Populus trichocarpa] gi|222844089|gb|EEE81636.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/249 (73%), Positives = 204/249 (81%), Gaps = 23/249 (9%)

Query: 127 VPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMH 186
           VPTIEV YDQ+NRGV DTPKRSNLSRRIASLVRFREKRKERCFDKKIRY+VRKEVAQRMH
Sbjct: 33  VPTIEVQYDQNNRGVGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMH 92

Query: 187 RKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPR 246
           RKNGQFAS+KE+ G S WDS Q  +QDGTP  ETVVRRC+HCGVSENNTPAMRRGPAGPR
Sbjct: 93  RKNGQFASIKENPGDSSWDSGQSCLQDGTPLSETVVRRCKHCGVSENNTPAMRRGPAGPR 152

Query: 247 TLCNACGLMWANK--------------------ETPMDVKPSIMEGEFSGNQDE--LGTP 284
           TLCNACGLMWANK                    ET ++VKPSI+EGEFSGNQDE   GT 
Sbjct: 153 TLCNACGLMWANKGTLRDLSKGGRNLPVDQIEPETLIEVKPSIIEGEFSGNQDEHMQGTA 212

Query: 285 EDPAKAVNQGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDT 344
           +D +KAV++G +N SI+PDE     A ED+TN+LPMG++HSS DDDEQEPLVELANPSDT
Sbjct: 213 KDLSKAVSEGFNNHSINPDEV-FQEATEDITNTLPMGVIHSSGDDDEQEPLVELANPSDT 271

Query: 345 DIDIPSNFD 353
           ++DIP+NFD
Sbjct: 272 ELDIPANFD 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465211|ref|XP_003602887.1| Two-component response regulator-like PRR37 [Medicago truncatula] gi|355491935|gb|AES73138.1| Two-component response regulator-like PRR37 [Medicago truncatula]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/313 (56%), Positives = 219/313 (69%), Gaps = 48/313 (15%)

Query: 88  RTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPYDQSNRGVVDTPKR 147
           R  ELTLSFEGEVYVFP VT +KVQAVLL LGG     G+PT E+P+DQ+NRG+    K 
Sbjct: 66  RIGELTLSFEGEVYVFPDVTHQKVQAVLLFLGGSGAQPGMPTAELPFDQNNRGMGGIGKL 125

Query: 148 SNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGASPWDSS 207
            NLSRRIASLVR+REKRKERCFDKKIRY+VRKEVA+RMHR+ GQFA LK+S G+S W+S+
Sbjct: 126 PNLSRRIASLVRYREKRKERCFDKKIRYTVRKEVAERMHREKGQFAPLKQSPGSSSWNSA 185

Query: 208 QDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK-------- 259
           Q   QDG+P PE+ +RRCQHCGV+ENNTPAMRRGPAGPRTLCNACGLMWANK        
Sbjct: 186 QGAGQDGSPNPES-LRRCQHCGVNENNTPAMRRGPAGPRTLCNACGLMWANKVSHFDNKY 244

Query: 260 ------------------------------ETPMDVKPSIMEGEFSGNQDELGTPEDPAK 289
                                         + P+DVKP+++EGEFS  ++E G  E+P+K
Sbjct: 245 GFDETLGSTFGTLRDLSKGGRNISVEQSRPDPPVDVKPTVLEGEFSVIENEQGISEEPSK 304

Query: 290 AVN-QGSDNPSIDPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVEL--------AN 340
            V  +  ++ + +P +E++  +AE LT +LP+ + HSS +DDEQEP+VEL        +N
Sbjct: 305 TVGAEVLNDHASNPGDEELSESAEHLTKTLPLVIYHSSENDDEQEPVVELSNPSDAGMSN 364

Query: 341 PSDTDIDIPSNFD 353
           PSDTDIDIP NFD
Sbjct: 365 PSDTDIDIPGNFD 377

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494710|ref|XP_002268872.2| PREDICTED: GATA transcription factor 28-like [Vitis vinifera]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/380 (50%), Positives = 231/380 (60%), Gaps = 53/380 (13%)

Query: 1   MAAANPQPLQARPFEEH---ARAPPIQIEDEDGDYEDGEGMDDIDEGNINSINIINNNNN 57
           M   NP+PLQA PFEEH   +   PI+I   +G +E                  + +   
Sbjct: 1   METVNPRPLQALPFEEHDDDSMQVPIEINGNEGGFE------------------VEDVTG 42

Query: 58  NNNTNNNSNISNNSSMVNVAEHGVVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLL 117
                 +       S VN  E   VVA   RTSELT+SFEGEVYVF AVTP+KVQAVLLL
Sbjct: 43  GGGEAVSGGEGGRMSSVNADEKSSVVA--QRTSELTISFEGEVYVFHAVTPDKVQAVLLL 100

Query: 118 LGGRDIPTGVPTIEVPYDQSNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSV 177
           LGG + P+ V + E    Q+ +G+VD  K SNL RRIASL+RFREKRKERCF+KKIRY+ 
Sbjct: 101 LGGHETPSSVSSSEFLLQQNMKGLVDASKCSNLPRRIASLIRFREKRKERCFEKKIRYTC 160

Query: 178 RKEVAQRMHRKNGQFASLKESSGASP--WDSSQDGIQDGTPRPETVVRRCQHCGVSENNT 235
           RKEVAQRMHRKNGQFAS+KES   +   WD S      GTP PE V RRCQHCG+SE +T
Sbjct: 161 RKEVAQRMHRKNGQFASVKESFKMATGNWDPS-----SGTPCPEYVFRRCQHCGISEKST 215

Query: 236 PAMRRGPAGPRTLCNACGLMWANK--------------------ETPMDVKPSIMEGEFS 275
           PAMRRGPAGPR+LCNACGLMWANK                    ET  D+KP  ME E +
Sbjct: 216 PAMRRGPAGPRSLCNACGLMWANKGTLRDLSKGSRMIPFGQDELETSDDIKPVTMEREKA 275

Query: 276 -GNQDELGTPEDPAKAVNQGSDNPSI-DPDEEDMHGAAEDLTNSLPMGLVHSSADDDEQE 333
            GN DELG+ E+  K V   S NP+    +E+D+   A  L + LP+ + +SS + DEQE
Sbjct: 276 YGNHDELGSSEE-MKPVPLESGNPTTGQQNEQDLLETAVALVDHLPVPVDNSSINPDEQE 334

Query: 334 PLVELANPSDTDIDIPSNFD 353
               LAN S TD +IP+NFD
Sbjct: 335 NTEVLANVSGTDFEIPTNFD 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.555	0.659	0.553	7.4e-50
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.640	0.748	0.472	4.7e-48
TAIR|locus:2062749	183	AT2G46670 "AT2G46670" [Arabido	0.161	0.311	0.456	4.5e-08
DICTYBASE|DDB_G0295707	695	gtaP "GATA zinc finger domain-	0.424	0.215	0.288	6.7e-07
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.141	0.185	0.472	1.2e-06
TAIR|locus:2151206	727	PRR7 "pseudo-response regulato	0.209	0.101	0.389	3.3e-06
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.124	0.160	0.478	6.1e-06
TAIR|locus:2044376	468	PRR9 "pseudo-response regulato	0.161	0.121	0.456	6.4e-06
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.232	0.254	0.329	1.2e-05
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.235	0.314	0.337	2.1e-05

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 118/213 (55%), Positives = 145/213 (68%)

Query:    81 VVVAAASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPT-IEVPYDQSNR 139
             VV        +LTLSF+G+VYVF  V+PEKVQAVLLLLGGR++P  +PT +  P+ Q+NR
Sbjct:    69 VVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPH-QNNR 127

Query:   140 --GVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKE 197
               G+  TP+R ++ +R+ASL+RFREKRK R FDK IRY+VRKEVA RM RK GQF S K 
Sbjct:   128 VLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKS 187

Query:   198 S---SGA--SPWDSSQDGIQDGTP--RPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCN 250
             S   SG+  S W S+Q    +GT   +PE +   C+HCG SE +TP MRRGP GPRTLCN
Sbjct:   188 SNDDSGSTGSDWGSNQSWAVEGTETQKPEVL---CRHCGTSEKSTPMMRRGPDGPRTLCN 244

Query:   251 ACGLMWANKETPMD---VKPSIMEGEFSGNQDE 280
             ACGLMWANK T  D   V P       S N++E
Sbjct:   245 ACGLMWANKGTLRDLSKVPPPQTPQHLSLNKNE 277

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 120/254 (47%), Positives = 157/254 (61%)

Query:    75 NVAEH-GVVVAAASRTSE-LTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPT-IE 131
             NV ++ G VV   S   + LTLSF+G+VYVF +V PEKVQAVLLLLGGR++P   P  + 
Sbjct:    65 NVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLG 124

Query:   132 VPYDQSNR--GVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKN 189
              P+ Q+NR   +  TP+R ++ +R+ASLVRFREKRK R FDKKIRY+VRKEVA RM R  
Sbjct:   125 SPH-QNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNK 183

Query:   190 GQFASLKES-----SGASPWDSSQD-GIQDGTPRPETVVRRCQHCGVSENNTPAMRRGPA 243
             GQF S K +     S  S W S+Q   I+    + + +   C+HCG+ E +TP MRRGPA
Sbjct:   184 GQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEI--SCRHCGIGEKSTPMMRRGPA 241

Query:   244 GPRTLCNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSIDPD 303
             GPRTLCNACGLMWANK    D+  +         Q     P      +N+  D  +++ D
Sbjct:   242 GPRTLCNACGLMWANKGAFRDLSKA-------SPQTAQNLP------LNKNED-ANLETD 287

Query:   304 EEDMHGAAEDLTNS 317
              + M   A D++NS
Sbjct:   288 HQIMITVANDISNS 301

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062749 AT2G46670 "AT2G46670" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.5e-08, P = 4.5e-08
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query:   146 KRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGAS 202
             +R + S+R A+L++FR KRK+RCFDKK+RY  RK++A++  R  GQF     S  ++
Sbjct:   125 QRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDAST 181

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0295707 gtaP "GATA zinc finger domain-containing protein 16" [Dictyostelium discoideum (taxid:44689)]

 Score = 144 (55.7 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 49/170 (28%), Positives = 73/170 (42%)

Query:   188 KNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVR------RCQHCGVSENNTPAMRRG 241
             KN +  +   S G S    + D  Q   P     +R       C  CGV+  NTP  RRG
Sbjct:   437 KNSKGGNTNNSGGGSSSGGTND-TQAKKPARRRKMRYGGTELSCHTCGVT--NTPEWRRG 493

Query:   242 PAGPRTLCNACGLMWANKETPMDVKPSIMEGEFSGNQDELGTPEDPAKAVNQGSDNPSID 301
             P G +TLCNACGL WA K    + +  ++      N  E   P+   K   + SDN + +
Sbjct:   494 PNGAKTLCNACGLAWA-KSVKSEKQKELLANSTGVNITE---PKKAQKRKKESSDNNNNN 549

Query:   302 PDEEDMHGAAEDLTNSLPMGLVHSSADDDEQEPLVELANPSDTDIDIPSN 351
              +  D +   +    S    L +   DDD   P    ++P+ ++   PS+
Sbjct:   550 NNSSDSNKVLKSDDGSNNTNLTN---DDDNGYP----SSPNSSNSTSPSS 592

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query:   217 RPETVV---RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPS 268
             + ETV+   RRC HCG   NNTP  R GP GP+TLCNACG+ + +     + +P+
Sbjct:   171 KQETVLVFQRRCSHCGT--NNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPA 223

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2151206 PRR7 "pseudo-response regulator 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 30/77 (38%), Positives = 50/77 (64%)

Query:   137 SNRGVVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLK 196
             S  G  +    + +S+R A+L +FR+KRKERCF KK+RY  RK++A++  R  GQF  ++
Sbjct:   653 SGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQF--VR 710

Query:   197 ESSGASPWDSSQDGIQD 213
             +++ A+  D+    I+D
Sbjct:   711 KTAAATD-DNDIKNIED 726

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query:   223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKPS 268
             R+CQHCG  +  TP  R GPAGP+TLCNACG+ + +     + +P+
Sbjct:   194 RKCQHCGAEK--TPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPA 237

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2044376 PRR9 "pseudo-response regulator 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query:   146 KRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESSGAS 202
             +R + S+R A+L++FR KRK+RCFDKK+RY  RK++A++  R  GQF     S  ++
Sbjct:   410 QRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDAST 466

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query:   185 MHRKNGQFASLKESSGASPWDSSQDGIQ-DGTPRPETVVRRCQHCGVSENNTPAMRRGPA 243
             +++K  + A +  SS +S  D   +G   D     +  +R+C HC V++  TP  R GP 
Sbjct:   190 INKKKKKKAKITSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCMHCEVTK--TPQWRLGPM 247

Query:   244 GPRTLCNACGLMWANKETPMDVKPS 268
             GP+TLCNACG+ + +     + +P+
Sbjct:   248 GPKTLCNACGVRYKSGRLFPEYRPA 272

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 29/86 (33%), Positives = 41/86 (47%)

Query:   183 QRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPETVVRRCQHCGVSENNTPAMRRGP 242
             Q++H    +F   KE SG       +             +RRC HC  SE  TP  R GP
Sbjct:   140 QQLHSA-AKFKPKKEQSGGGGGGGGRHQSSSSETTEGGGMRRCTHCA-SEK-TPQWRTGP 196

Query:   243 AGPRTLCNACGLMWANKETPMDVKPS 268
              GP+TLCNACG+ + +     + +P+
Sbjct:   197 LGPKTLCNACGVRFKSGRLVPEYRPA 222

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003097601 hypothetical protein (280 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
pfam06203	45	pfam06203, CCT, CCT motif	4e-18
pfam00320	36	pfam00320, GATA, GATA zinc finger	7e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	5e-12
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	1e-11
pfam06200	36	pfam06200, tify, tify domain	2e-07
smart00979	36	smart00979, TIFY, This short possible domain is fo	2e-06
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	0.001

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 153 RIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKE 197
           R A+L+R++EKRK R FDKKIRY+ RK VA+   R  G+F    E
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 61.9 bits (151), Expect = 7e-13
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 225 CQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262
           C +CG ++  TP  RRGP G RTLCNACGL +      
Sbjct: 1   CSNCGTTK--TPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 60.1 bits (146), Expect = 5e-12
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANK 259
            C +CG +   TP  RRGP+G  TLCNACGL W   
Sbjct: 1   ACSNCGTTT--TPLWRRGPSGGSTLCNACGLYWKKH 34

Length = 54

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKET 261
            R C +CG +E  TP  RRGP+G +TLCNACGL +     
Sbjct: 3   GRSCSNCGTTE--TPLWRRGPSGNKTLCNACGLYYKKHGG 40

Length = 52

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 85  AASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGG 120
            ++ +++LT+ + G+V VF  V PEK Q ++ L   
Sbjct: 1   PSAESAQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 89  TSELTLSFEGEVYVFPAVTPEKVQAVLLLLGG 120
           + +LT+ + G V VF  V PEK Q ++ L G 
Sbjct: 5   SQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 153 RIASLVRFREKRKERCFDKKIRYSV 177
           R ASL RF EKRK+R       Y V
Sbjct: 4   RKASLQRFLEKRKDRLVS-AAPYQV 27

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.43
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.39
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.38
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.37
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.36
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.42
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.76
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	96.58
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	89.15
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	85.7

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.43  E-value=7.3e-14  Score=104.57  Aligned_cols=42  Identities=45%  Similarity=1.005  Sum_probs=37.9

Q ss_pred             cCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626          224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP  267 (353)
Q Consensus       224 ~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~  267 (353)
                      .|+||+++  .||+||+||.|..+|||||||+|++++..++...
T Consensus         1 ~C~~C~~~--~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~   42 (54)
T cd00202           1 ACSNCGTT--TTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSK   42 (54)
T ss_pred             CCCCCCCC--CCcccccCCCCcchHHHHHHHHHHhcCCCCCccc
Confidence            49999996  5999999999989999999999999998877753

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.39  E-value=1.4e-13  Score=102.16  Aligned_cols=43  Identities=44%  Similarity=0.946  Sum_probs=38.1

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCC-CCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP-MDVK  266 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~-~~~~  266 (353)
                      ...|++|+++  .||+||+||.|..+|||||||+|++++.+ ++..
T Consensus         3 ~~~C~~C~~~--~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~   46 (52)
T smart00401        3 GRSCSNCGTT--ETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLS   46 (52)
T ss_pred             CCCcCCCCCC--CCCccccCCCCCCcEeecccHHHHHcCCCCCccc
Confidence            4689999986  59999999999999999999999999887 5543

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.38  E-value=2.5e-13  Score=98.36  Aligned_cols=44  Identities=50%  Similarity=0.761  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhhhcccccccccchhhHHHHHhhhcccCcccccc
Q 018626          153 RIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLK  196 (353)
Q Consensus       153 R~asl~RfREKRK~R~f~KkiRY~~RK~~A~r~~R~KGrF~s~k  196 (353)
                      |.++|+||++||+.|+|+|+|+|++||.+|+.++|+||||++..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            57899999999999999999999999999999999999998764

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.37  E-value=1.4e-13  Score=95.00  Aligned_cols=35  Identities=54%  Similarity=1.178  Sum_probs=28.0

Q ss_pred             CcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCC
Q 018626          225 CQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKET  261 (353)
Q Consensus       225 C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~  261 (353)
                      |.+|+++  .||+||+||.|..+||||||++|++++.
T Consensus         1 C~~C~tt--~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTT--ETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--S--T-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCC--CCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            8999997  4999999999998999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.36  E-value=9.6e-13  Score=91.26  Aligned_cols=34  Identities=38%  Similarity=0.701  Sum_probs=32.0

Q ss_pred             cCCCceeeeeecceEEEeCCCCHHHHHHHHHHhC
Q 018626           86 ASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLG  119 (353)
Q Consensus        86 ~~~~sqLTI~y~GeV~VFdsVspeKvqaVllLlg  119 (353)
                      .+.++||||||+|+|+|||+|+++||++||+|++
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~   35 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLAS   35 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhc
Confidence            4678899999999999999999999999999986

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.42  E-value=1.2e-07  Score=85.28  Aligned_cols=41  Identities=46%  Similarity=1.077  Sum_probs=35.8

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMD  264 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~  264 (353)
                      ...|.+|+++  .||+||++|.|+..||||||++|+++...+.
T Consensus       199 ~~~c~~~~~~--~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~  239 (340)
T KOG1601|consen  199 LRQCSNCGTT--KTPLWRRGPEGPKSLCNACGLRYKKGGVRRP  239 (340)
T ss_pred             CcccCCCCCC--CCcceecCCCCCccccccchhhhhhcCcccc
Confidence            4689999986  5999999999999999999999999963333

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.76  E-value=1.7e-05  Score=82.50  Aligned_cols=48  Identities=29%  Similarity=0.607  Sum_probs=40.6

Q ss_pred             CCCCccccCcccCCCCCCCcccccCCCC----CcccchHHHHHHHhcCCCC-CCC
Q 018626          217 RPETVVRRCQHCGVSENNTPAMRRGPAG----PRTLCNACGLMWANKETPM-DVK  266 (353)
Q Consensus       217 ~~e~~~~~C~~C~~~~~~TP~WR~GP~G----~~~LCNACGl~~~~~~~~~-~~~  266 (353)
                      ..+.+...|.+|.++  .||+|||+..+    .-.|||||||+|+-+++++ ++.
T Consensus       153 ~~s~~~~vc~Nc~t~--stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t  205 (498)
T COG5641         153 DNSNQPHVCSNCKTT--STPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPIS  205 (498)
T ss_pred             ccccccchhcccccc--CCccccccccccccCCccccccccccccccCCcCCCcc
Confidence            444556699999996  69999999994    3799999999999999999 664

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=96.58  E-value=0.0012  Score=43.47  Aligned_cols=24  Identities=54%  Similarity=0.627  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHhhhcccccccccch
Q 018626          152 RRIASLVRFREKRKERCFDKKIRYS  176 (353)
Q Consensus       152 ~R~asl~RfREKRK~R~f~KkiRY~  176 (353)
                      .|.+||.||.||||+|... +..|.
T Consensus         3 aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    3 ARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ---HHHHHHHHHH------------
T ss_pred             hHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            5899999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=89.15  E-value=1.8  Score=45.61  Aligned_cols=39  Identities=21%  Similarity=0.461  Sum_probs=31.5

Q ss_pred             cccCcccCCCCCCCccccc--CCCCCcccchHHHHHHHhcCCC
Q 018626          222 VRRCQHCGVSENNTPAMRR--GPAGPRTLCNACGLMWANKETP  262 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~--GP~G~~~LCNACGl~~~~~~~~  262 (353)
                      .+.|-+|+++  ..-+|-.  +|.-...||..|.++|+|.+.+
T Consensus       386 g~~CEsC~tt--qs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  386 GRACESCYTT--QSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCcccccccc--cccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            5789999996  4677754  5555779999999999998776

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=85.70  E-value=0.4  Score=50.67  Aligned_cols=45  Identities=22%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP  267 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~  267 (353)
                      ...|.+|++. +.||.||+...-.-.+|||||++.+..+..+++.|
T Consensus       297 ~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~p  341 (498)
T COG5641         297 DKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLP  341 (498)
T ss_pred             hcCccccccc-ccCcccccccccccccccccccccCCcccccccCC
Confidence            4678999875 57999999988778999999999999999998877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	5e-11
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	1e-08
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	2e-06
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	3e-06
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 57.2 bits (138), Expect = 5e-11
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 217 RPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256
                  +C +C V+E  T   R   +     CNAC +  
Sbjct: 3   HMNKKSFQCSNCSVTE--TIRWRNIRSKEGIQCNACFIYQ 40

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 220 TVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
           +  R C +CG +   TP  RR   G   LCNACGL
Sbjct: 2   SEARECVNCGATA--TPLWRRDRTG-HYLCNACGL 33

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGL 254
             C +C      TP  RR P G + LCNACGL
Sbjct: 2   TTCTNCFTQT--TPLWRRNPEG-QPLCNACGL 30

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 211 IQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262
           +++G          C +C      TP  RR P G + LCNACGL        
Sbjct: 1   MKNGEQNG---PTTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVV 46

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262
             C +C  +   T   RR   G   +CNACGL +      
Sbjct: 8   TSCANCQTTT--TTLWRRNANG-DPVCNACGLYYKLHNIN 44

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 47/323 (14%), Positives = 90/323 (27%), Gaps = 105/323 (32%)

Query: 75  NVAEHG-------VVVAAASRTSELTLSFEGEVY---VFPAVTPEKVQAVLLLLGGRDIP 124
           NV   G        V      + ++    + +++   +    +PE V  +L  L  +   
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--- 208

Query: 125 TGVPTIEVPYDQSNRGVVDTPKRSN-LSRRIASLVRFREKRKERC--------------- 168
                I+  +   +    +   R + +   +  L   + K  E C               
Sbjct: 209 -----IDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLVLLNVQNAKAWNA 261

Query: 169 FDK--KI----RYSVRKEVAQRMHRKNGQFASLKESSGASPWDSSQDGIQDGTPRPET-- 220
           F+   KI    R+   K+V   +             S A+    S D         E   
Sbjct: 262 FNLSCKILLTTRF---KQVTDFL-------------SAATTTHISLDHHSMTLTPDEVKS 305

Query: 221 VVRRCQHCGVSENNTP--AMRRGPAGPRTLCNACGLM-------WAN-KETPMDVKPSIM 270
           ++ +   C   +   P   +   P       +            W N K    D   +I+
Sbjct: 306 LLLKYLDCRPQD--LPREVLTTNP----RRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 271 E--------GEFSGNQDELGT-PED---PAKAVNQGSDNPSI---DPDEEDMHGAAEDLT 315
           E         E+    D L   P     P   +       S+   D  + D+      + 
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-------SLIWFDVIKSDV----MVVV 408

Query: 316 NSLPMGLVHSSADDDEQEPLVEL 338
           N L     +S  +   +E  + +
Sbjct: 409 NKL---HKYSLVEKQPKESTISI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.61
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.59
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.54
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.52
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.47
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.26
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.13
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	95.48
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	95.47

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.61  E-value=2.7e-16  Score=111.83  Aligned_cols=41  Identities=37%  Similarity=0.731  Sum_probs=37.7

Q ss_pred             ccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626          223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK  266 (353)
Q Consensus       223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~  266 (353)
                      ..|++|+++  .||+||+||+|+ +|||||||+|++++++|++.
T Consensus         2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   42 (43)
T 2vut_I            2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS   42 (43)
T ss_dssp             CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred             CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence            479999996  599999999997 99999999999999998874

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.59  E-value=6.4e-16  Score=111.35  Aligned_cols=42  Identities=38%  Similarity=0.739  Sum_probs=38.5

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK  266 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~  266 (353)
                      ...|++|+++  .||+||+||.|+ +|||||||+|++++++|++.
T Consensus         4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   45 (46)
T 1gnf_A            4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLI   45 (46)
T ss_dssp             SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCC
T ss_pred             CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCC
Confidence            4679999997  599999999996 99999999999999999875

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.54  E-value=2.4e-15  Score=114.91  Aligned_cols=42  Identities=29%  Similarity=0.628  Sum_probs=38.4

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK  266 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~  266 (353)
                      ...|++|+++  .||+||+||+|+ +|||||||+|++++..|++.
T Consensus         7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~   48 (63)
T 3dfx_A            7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLT   48 (63)
T ss_dssp             TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGG
T ss_pred             CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcC
Confidence            4679999997  599999999997 99999999999999988775

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.52  E-value=6.5e-15  Score=113.46  Aligned_cols=43  Identities=35%  Similarity=0.665  Sum_probs=39.0

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP  267 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~  267 (353)
                      ...|++|+++  .||+||+||.|. +|||||||+|+++++.|++..
T Consensus         9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~   51 (66)
T 4gat_A            9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL   51 (66)
T ss_dssp             SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGG
T ss_pred             CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhh
Confidence            4689999996  599999999996 999999999999999988754

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.47  E-value=1.6e-14  Score=112.77  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=37.6

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP  267 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~  267 (353)
                      ...|+||+++  .||+||+||.+..+|||||||+|+++++.|++..
T Consensus         8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~   51 (71)
T 2kae_A            8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTA   51 (71)
T ss_dssp             CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHH
T ss_pred             CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCccc
Confidence            4689999997  5999999655545999999999999999988754

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.26  E-value=1.7e-12  Score=109.62  Aligned_cols=43  Identities=28%  Similarity=0.598  Sum_probs=38.9

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP  267 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~  267 (353)
                      ...|++|+++  .||+||+||.| ++|||||||||++++..|++..
T Consensus        59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~  101 (115)
T 4hc9_A           59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTM  101 (115)
T ss_dssp             TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGG
T ss_pred             cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccc
Confidence            3579999997  49999999999 8999999999999999988753

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.13  E-value=3.3e-11  Score=101.69  Aligned_cols=43  Identities=37%  Similarity=0.708  Sum_probs=38.3

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVKP  267 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~~  267 (353)
                      .+.|.+|+++  .||+||+||.| .+|||||||+|+.++..+++.+
T Consensus         5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~K   47 (115)
T 4hc9_A            5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIK   47 (115)
T ss_dssp             -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSS
T ss_pred             CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhccccccccc
Confidence            4689999996  59999999999 7999999999999999988753

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=95.47  E-value=0.0043  Score=38.11  Aligned_cols=19  Identities=63%  Similarity=0.737  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhhhcccccc
Q 018626          153 RIASLVRFREKRKERCFDK  171 (353)
Q Consensus       153 R~asl~RfREKRK~R~f~K  171 (353)
                      |.+||.||.||||+|...+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            5789999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	5e-11
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	1e-08
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	6e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (132), Expect = 5e-11
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMW 256
           R C +CG +   TP  RR   G   LCNACGL  
Sbjct: 3   RECVNCGATA--TPLWRRDRTG-HYLCNACGLYH 33

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 48.3 bits (115), Expect = 1e-08
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 225 CQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDV 265
           C +C      TP  RR P G + LCNACGL          +
Sbjct: 3   CTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPL 40

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETP 262
             C +C  S   T   RR P G   +CNACGL +   +  
Sbjct: 5   TVCSNCQTST--TTLWRRSPMG-DPVCNACGLYYKLHQVN 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.65
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.59
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.55

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.65  E-value=2.8e-17  Score=114.39  Aligned_cols=40  Identities=38%  Similarity=0.765  Sum_probs=37.0

Q ss_pred             cCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626          224 RCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK  266 (353)
Q Consensus       224 ~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~  266 (353)
                      .|+||+++  .||+||+||.| ++|||||||||+++++.||+.
T Consensus         2 ~C~nC~tt--~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~s   41 (42)
T d2vuti1           2 TCTNCFTQ--TTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS   41 (42)
T ss_dssp             CCSSSCCC--CCSCCEECTTS-CEECHHHHHHHHHHSSCCCCC
T ss_pred             cCCCCCCC--CCccceeCCCC-CCchhhhhHHHHHcCCCCCCC
Confidence            59999996  59999999999 799999999999999998874

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.7e-16  Score=108.74  Aligned_cols=37  Identities=43%  Similarity=0.886  Sum_probs=33.5

Q ss_pred             cccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCC
Q 018626          222 VRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKET  261 (353)
Q Consensus       222 ~~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~  261 (353)
                      .+.|++|+++  .||+||+||.| ++|||||||+|+++++
T Consensus         2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            3689999996  59999999999 6899999999999875

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=2.2e-15  Score=114.25  Aligned_cols=41  Identities=34%  Similarity=0.735  Sum_probs=37.5

Q ss_pred             ccCcccCCCCCCCcccccCCCCCcccchHHHHHHHhcCCCCCCC
Q 018626          223 RRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKETPMDVK  266 (353)
Q Consensus       223 ~~C~~C~~~~~~TP~WR~GP~G~~~LCNACGl~~~~~~~~~~~~  266 (353)
                      ..|+||+++  .||+||+||.| .+|||||||||++++..+++.
T Consensus         5 ~~C~nCgt~--~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~   45 (66)
T d3gata_           5 TVCSNCQTS--TTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLT   45 (66)
T ss_dssp             CCCTTTCCC--CCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGG
T ss_pred             CCCCCCCCC--CCcccccCCCC-CcccchhHHHHHHhCCcCCcc
Confidence            579999996  59999999999 799999999999999988874